CANDIDATE ID: 62

CANDIDATE ID: 62

NUMBER OF GENES: 12
AVERAGE SCORE:    9.9947523e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.6666667e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7327 (trmJ) (b2532)
   Products of gene:
     - G7327-MONOMER (tRNA:Cm32/Um32 methyltransferase)
     - CPLX0-7420 (tRNA:Cm32/Um32 methyltransferase)
       Reactions:
        all-tRNAs + S-adenosyl-L-methionine  ->  a tRNA containing 2'-O-methylcytosine or 2'-O-methyluridine + S-adenosyl-L-homocysteine

- G7326 (iscR) (b2531)
   Products of gene:
     - G7326-MONOMER (IscR transcriptional dual regulator)
       Regulatees:
        TU0-14811 (rnlA)
        TU0-8481 (nfuA)
        TU0-8480 (erpA)
        TU0-8482 (ydiU)
        TU0-8484 (napFDAGHBC)
        TU0-1881 (iscRSUA)
        TU0-2621 (sufABCDSE)
        TU00288 (hyaABCDEF)

- G7325 (iscS) (b2530)
   Products of gene:
     - G7325-MONOMER (cysteine desulfurase monomer)
     - CPLX0-248 (cysteine desulfurase)
       Reactions:
        a ThiI sulfur-carrier protein + L-cysteine  ->  a ThiI persulfide + L-alanine
         In pathways
         THISYN-PWY (thiamin biosynthesis I)
        L-cysteine + a protein L-cysteine  ->  a protein-S-sulfanylcysteine + L-alanine
         In pathways
         PWY0-1061 (superpathway of alanine biosynthesis)
         PWY0-1021 (alanine biosynthesis III)

- G7324 (iscU) (b2529)
   Products of gene:
     - G7324-MONOMER (scaffold protein involved in iron-sulfur cluster assembly)

- EG12311 (iscX) (b2524)
   Products of gene:
     - EG12311-MONOMER (protein with possible role in iron-sulfur cluster biogenesis)

- EG12309 (yjtD) (b4403)
   Products of gene:
     - EG12309-MONOMER (predicted rRNA methyltransferase)
     - CPLX0-7422 (predicted rRNA methyltransferase)

- EG12132 (iscA) (b2528)
   Products of gene:
     - EG12132-MONOMER (iron-sulfur cluster assembly protein)

- EG12131 (hscB) (b2527)
   Products of gene:
     - EG12131-MONOMER (Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly)

- EG12130 (hscA) (b2526)
   Products of gene:
     - EG12130-MONOMER (chaperone, member of Hsp70 protein family)
       Reactions:
        ATP + H2O  ->  ADP + phosphate + 2 H+

- EG11378 (sufA) (b1684)
   Products of gene:
     - EG11378-MONOMER (Fe-S cluster assembly, scaffold protein)
     - CPLX0-7824 (Fe-S transport protein in Fe-S cluster assembly)

- EG11328 (fdx) (b2525)
   Products of gene:
     - FERREDOXIN-MONOMER (reduced ferredoxin)
     - OX-FERREDOXIN (oxidized ferredoxin)

- EG10983 (suhB) (b2533)
   Products of gene:
     - EG10983-MONOMER (inositol monophosphatase)
       Reactions:
        glycerol 2-phosphate + H2O  =  phosphate + glycerol
        1D-myo-inositol (1)-monophosphate + H2O  =  phosphate + myo-inositol
         In pathways
         PWY-4702 (PWY-4702)



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ORGANISMS CONTAINING AT LEAST 10 GENES FROM THE GROUP:

Total number of orgs: 158
Effective number of orgs (counting one per cluster within 468 clusters): 102

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175812
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295312
YPES386656 ncbi Yersinia pestis Pestoides F12
YPES377628 ncbi Yersinia pestis Nepal51612
YPES360102 ncbi Yersinia pestis Antiqua12
YPES349746 ncbi Yersinia pestis Angola12
YPES214092 ncbi Yersinia pestis CO9212
YPES187410 ncbi Yersinia pestis KIM 1012
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808112
VVUL216895 ncbi Vibrio vulnificus CMCP612
VVUL196600 ncbi Vibrio vulnificus YJ01612
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 221063312
VFIS312309 ncbi Vibrio fischeri ES11412
VEIS391735 ncbi Verminephrobacter eiseniae EF01-211
VCHO345073 ncbi Vibrio cholerae O39512
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696112
TDEN292415 ncbi Thiobacillus denitrificans ATCC 2525912
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT212
SSP94122 ncbi Shewanella sp. ANA-312
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)10
SSP321327 ncbi Synechococcus sp. JA-3-3Ab10
SSON300269 ncbi Shigella sonnei Ss04612
SSED425104 ncbi Shewanella sediminis HAW-EB312
SPRO399741 ncbi Serratia proteamaculans 56812
SPEA398579 ncbi Shewanella pealeana ATCC 70034512
SONE211586 ncbi Shewanella oneidensis MR-112
SLOI323850 ncbi Shewanella loihica PV-412
SHIGELLA ncbi Shigella flexneri 2a str. 2457T12
SHAL458817 ncbi Shewanella halifaxensis HAW-EB412
SFLE373384 ncbi Shigella flexneri 5 str. 840112
SFLE198214 ncbi Shigella flexneri 2a str. 30112
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47612
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6711
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915012
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1812
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty212
SDYS300267 ncbi Shigella dysenteriae Sd19712
SDEN318161 ncbi Shewanella denitrificans OS21712
SBOY300268 ncbi Shigella boydii Sb22712
SBAL402882 ncbi Shewanella baltica OS18512
SBAL399599 ncbi Shewanella baltica OS19512
RSOL267608 ncbi Ralstonia solanacearum GMI100012
RRIC452659 ncbi Rickettsia rickettsii Iowa10
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith10
RMET266264 ncbi Ralstonia metallidurans CH3412
RMAS416276 ncbi Rickettsia massiliae MTU510
RFER338969 ncbi Rhodoferax ferrireducens T11810
RFEL315456 ncbi Rickettsia felis URRWXCal210
REUT381666 ncbi Ralstonia eutropha H1612
REUT264198 ncbi Ralstonia eutropha JMP13412
RCON272944 ncbi Rickettsia conorii Malish 710
RBEL391896 ncbi Rickettsia bellii OSU 85-38910
RBEL336407 ncbi Rickettsia bellii RML369-C10
RAKA293614 ncbi Rickettsia akari Hartford10
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC300012
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a12
PSTU379731 ncbi Pseudomonas stutzeri A150112
PSP56811 Psychrobacter sp.12
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-111
PSP296591 ncbi Polaromonas sp. JS66611
PPUT76869 ncbi Pseudomonas putida GB-112
PPUT351746 ncbi Pseudomonas putida F112
PPUT160488 ncbi Pseudomonas putida KT244012
PPRO298386 ncbi Photobacterium profundum SS912
PNAP365044 ncbi Polaromonas naphthalenivorans CJ210
PMUL272843 ncbi Pasteurella multocida multocida Pm7011
PMEN399739 ncbi Pseudomonas mendocina ymp12
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO112
PING357804 ncbi Psychromonas ingrahamii 3712
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC12511
PFLU220664 ncbi Pseudomonas fluorescens Pf-512
PFLU216595 ncbi Pseudomonas fluorescens SBW2512
PFLU205922 ncbi Pseudomonas fluorescens Pf0-112
PENT384676 ncbi Pseudomonas entomophila L4812
PCRY335284 ncbi Psychrobacter cryohalolentis K512
PATL342610 ncbi Pseudoalteromonas atlantica T6c11
PARC259536 ncbi Psychrobacter arcticus 273-412
PAER208964 ncbi Pseudomonas aeruginosa PAO112
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA1412
NMEN374833 ncbi Neisseria meningitidis 05344212
NMEN272831 ncbi Neisseria meningitidis FAM1812
NMEN122587 ncbi Neisseria meningitidis Z249112
NMEN122586 ncbi Neisseria meningitidis MC5812
NGON242231 ncbi Neisseria gonorrhoeae FA 109012
MXAN246197 ncbi Myxococcus xanthus DK 162210
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E12
MPET420662 ncbi Methylibium petroleiphilum PM111
MMAG342108 ncbi Magnetospirillum magneticum AMB-112
MFLA265072 ncbi Methylobacillus flagellatus KT12
MCAP243233 ncbi Methylococcus capsulatus Bath12
LCHO395495 ncbi Leptothrix cholodnii SP-611
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857812
JSP375286 ncbi Janthinobacterium sp. Marseille12
HSOM228400 ncbi Haemophilus somnus 233611
HSOM205914 ncbi Haemophilus somnus 129PT11
HINF71421 ncbi Haemophilus influenzae Rd KW2012
HINF374930 ncbi Haemophilus influenzae PittEE10
HINF281310 ncbi Haemophilus influenzae 86-028NP12
HDUC233412 ncbi Haemophilus ducreyi 35000HP12
HARS204773 ncbi Herminiimonas arsenicoxydans12
GVIO251221 ncbi Gloeobacter violaceus PCC 742110
ESP42895 Enterobacter sp.12
EFER585054 ncbi Escherichia fergusonii ATCC 3546912
ECOO157 ncbi Escherichia coli O157:H7 EDL93311
ECOL83334 Escherichia coli O157:H712
ECOL585397 ncbi Escherichia coli ED1a12
ECOL585057 ncbi Escherichia coli IAI3912
ECOL585056 ncbi Escherichia coli UMN02612
ECOL585055 ncbi Escherichia coli 5598912
ECOL585035 ncbi Escherichia coli S8812
ECOL585034 ncbi Escherichia coli IAI112
ECOL481805 ncbi Escherichia coli ATCC 873912
ECOL469008 ncbi Escherichia coli BL21(DE3)12
ECOL439855 ncbi Escherichia coli SMS-3-512
ECOL413997 ncbi Escherichia coli B str. REL60612
ECOL409438 ncbi Escherichia coli SE1112
ECOL405955 ncbi Escherichia coli APEC O111
ECOL364106 ncbi Escherichia coli UTI8912
ECOL362663 ncbi Escherichia coli 53612
ECOL331111 ncbi Escherichia coli E24377A12
ECOL316407 ncbi Escherichia coli K-12 substr. W311012
ECOL199310 ncbi Escherichia coli CFT07312
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104312
DARO159087 ncbi Dechloromonas aromatica RCB12
CVIO243365 ncbi Chromobacterium violaceum ATCC 1247212
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA12
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)12
CPSY167879 ncbi Colwellia psychrerythraea 34H12
BVIE269482 ncbi Burkholderia vietnamiensis G412
BTHA271848 ncbi Burkholderia thailandensis E26412
BSP36773 Burkholderia sp.12
BPSE320373 ncbi Burkholderia pseudomallei 66812
BPSE320372 ncbi Burkholderia pseudomallei 1710b12
BPSE272560 ncbi Burkholderia pseudomallei K9624312
BPET94624 Bordetella petrii12
BPER257313 ncbi Bordetella pertussis Tohama I12
BPAR257311 ncbi Bordetella parapertussis 1282212
BMAL320389 ncbi Burkholderia mallei NCTC 1024712
BMAL320388 ncbi Burkholderia mallei SAVP112
BMAL243160 ncbi Burkholderia mallei ATCC 2334412
BCEN331272 ncbi Burkholderia cenocepacia HI242412
BCEN331271 ncbi Burkholderia cenocepacia AU 105412
BBRO257310 ncbi Bordetella bronchiseptica RB5012
BAMB398577 ncbi Burkholderia ambifaria MC40-612
BAMB339670 ncbi Burkholderia ambifaria AMMD12
ASP76114 ncbi Aromatoleum aromaticum EbN112
ASP62977 ncbi Acinetobacter sp. ADP112
ASP62928 ncbi Azoarcus sp. BH7212
ASP232721 ncbi Acidovorax sp. JS4211
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44911
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL0312
APLE416269 ncbi Actinobacillus pleuropneumoniae L2012
AHYD196024 Aeromonas hydrophila dhakensis11
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 2327012
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C11
ABAU360910 ncbi Bordetella avium 197N12
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin34512
AAVE397945 ncbi Acidovorax citrulli AAC00-111


Names of the homologs of the genes in the group in each of these orgs
  G7327   G7326   G7325   G7324   EG12311   EG12309   EG12132   EG12131   EG12130   EG11378   EG11328   EG10983   
YPSE349747 YPSIP31758_1166YPSIP31758_1167YPSIP31758_1168YPSIP31758_1169YPSIP31758_1174YPSIP31758_1166YPSIP31758_1170YPSIP31758_1171YPSIP31758_1172YPSIP31758_1741YPSIP31758_1173YPSIP31758_1165
YPSE273123 YPTB2861YPTB2860YPTB2859YPTB2858YPTB2853YPTB2861YPTB2857YPTB2856YPTB2855YPTB2314YPTB2854YPTB2862
YPES386656 YPDSF_2243YPDSF_2242YPDSF_2241YPDSF_2240YPDSF_2235YPDSF_2243YPDSF_2239YPDSF_2238YPDSF_2237YPDSF_0744YPDSF_2236YPDSF_2244
YPES377628 YPN_1239YPN_1240YPN_1241YPN_1242YPN_1247YPN_1239YPN_1243YPN_1244YPN_1245YPN_1859YPN_1246YPN_1238
YPES360102 YPA_2339YPA_2338YPA_2337YPA_2336YPA_2331YPA_2339YPA_2335YPA_2334YPA_2333YPA_1749YPA_2332YPA_2340
YPES349746 YPANGOLA_A0437YPANGOLA_A0436YPANGOLA_A0435YPANGOLA_A0434YPANGOLA_A0429YPANGOLA_A0437YPANGOLA_A0433YPANGOLA_A0432YPANGOLA_A0431YPANGOLA_A2594YPANGOLA_A0430YPANGOLA_A0438
YPES214092 YPO2898YPO2897YPO2896YPO2895YPO2890YPO2898YPO2894YPO2893YPO2892YPO2404YPO2891YPO2899
YPES187410 Y1332Y1333Y1334Y1335Y1341Y1332Y1336Y1338Y1339Y1934Y1340Y1331
YENT393305 YE1055YE1056YE1057YE1058YE1063YE1055YE1059YE1060YE1061YE2172YE1062YE1054
VVUL216895 VV1_0440VV1_0439VV1_0438VV1_0437VV1_0432VV1_0440VV1_0436VV1_0435VV1_0434VV1_0436VV1_0433VV1_0441
VVUL196600 VV0753VV0754VV0755VV0756VV0761VV0753VV0757VV0758VV0759VV0757VV0760VV0752
VPAR223926 VP0594VP0595VP0596VP0597VP0602VP0594VP0598VP0599VP0600VP0598VP0601VP0593
VFIS312309 VF0615VF0616VF0617VF0618VF0623VF0615VF0619VF0620VF0621VF0619VF0622VF0614
VEIS391735 VEIS_4249VEIS_2372VEIS_2373VEIS_2374VEIS_4249VEIS_2375VEIS_2376VEIS_2377VEIS_2375VEIS_2378VEIS_4248
VCHO345073 VC0395_A0275VC0395_A0276VC0395_A0277VC0395_A0278VC0395_A0283VC0395_A0275VC0395_A0279VC0395_A0280VC0395_A0281VC0395_A0279VC0395_A0282VC0395_A0274
VCHO VC0746VC0747VC0748VC0749VC0754VC0746VC0750VC0751VC0752VC0750VC0753VC0745
TDEN292415 TBD_1161TBD_1163TBD_1164TBD_1165TBD_1170TBD_1161TBD_1166TBD_1167TBD_1168TBD_1166TBD_1169TBD_1160
STYP99287 STM2545STM2544STM2543STM2542STM2537STM4600STM2541STM2540STM2539STM1369STM2538STM2546
SSP94122 SHEWANA3_2283SHEWANA3_2281SHEWANA3_2280SHEWANA3_2279SHEWANA3_2273SHEWANA3_2283SHEWANA3_2278SHEWANA3_2277SHEWANA3_2276SHEWANA3_2278SHEWANA3_2275SHEWANA3_2284
SSP321332 CYB_2783CYB_2499CYB_0419CYB_0420CYB_2783CYB_1638CYB_2781CYB_1638CYB_0815CYB_2170
SSP321327 CYA_1953CYA_0423CYA_1826CYA_1825CYA_1953CYA_1655CYA_0130CYA_1655CYA_1946CYA_2675
SSON300269 SSO_2614SSO_2613SSO_2612SSO_2611SSO_2606SSO_4553SSO_2610SSO_2609SSO_2608SSO_1472SSO_2607SSO_2615
SSED425104 SSED_2874SSED_2872SSED_2871SSED_2870SSED_2863SSED_2874SSED_2869SSED_2868SSED_2867SSED_2869SSED_2866SSED_2875
SPRO399741 SPRO_3629SPRO_3628SPRO_3627SPRO_3626SPRO_3621SPRO_0682SPRO_3625SPRO_3624SPRO_3623SPRO_2179SPRO_3622SPRO_3630
SPEA398579 SPEA_1485SPEA_1487SPEA_1488SPEA_1489SPEA_1496SPEA_1485SPEA_1490SPEA_1491SPEA_1492SPEA_1490SPEA_1493SPEA_1484
SONE211586 SO_2261SO_2263SO_2264SO_2265SO_2271SO_2261SO_2266SO_2267SO_2268SO_2266SO_2269SO_2260
SLOI323850 SHEW_2320SHEW_2318SHEW_2317SHEW_2316SHEW_2311SHEW_2320SHEW_2315SHEW_2314SHEW_2313SHEW_2315SHEW_2312SHEW_2321
SHIGELLA S2751S2750YFHOS2748YFHJLASTYFHFYFHEHSCAYDICFDXSUHB
SHAL458817 SHAL_1569SHAL_1571SHAL_1572SHAL_1573SHAL_1578SHAL_1569SHAL_1574SHAL_1575SHAL_1576SHAL_1574SHAL_1577SHAL_1568
SFLE373384 SFV_2580SFV_2579SFV_2578SFV_2577SFV_2572SFV_4436SFV_2576SFV_2575SFV_2574SFV_1707SFV_2573SFV_2581
SFLE198214 AAN44078.1AAN44077.1AAN44076.1AAN44075.1AAN44070.1AAN45847.1AAN44074.1AAN44073.1AAN44072.1AAN43290.1AAN44071.1AAN44079.1
SENT454169 SEHA_C2807SEHA_C2806SEHA_C2805SEHA_C2804SEHA_C2799SEHA_C5009SEHA_C2803SEHA_C2802SEHA_C2801SEHA_C1501SEHA_C2800SEHA_C2808
SENT321314 SCH_2539SCH_2538SCH_2537SCH_2536SCH_2532SCH_4445SCH_2535SCH_2534SCH_1389SCH_2533SCH_2540
SENT295319 SPA0321SPA0322SPA0323SPA0324SPA0329SPA4410SPA0325SPA0326SPA0327SPA1485SPA0328SPA0320
SENT220341 STY2791STY2790STY2789STY2788STY2783STY4949STY2787STY2786STY2785STY1754STY2784STY2792
SENT209261 T0311T0312T0313T0314T0319T4639T0315T0316T0317T1237T0318T0310
SDYS300267 SDY_2728SDY_2727SDY_2726SDY_2725SDY_2720SDY_4664SDY_2724SDY_2723SDY_2722SDY_2724SDY_2721SDY_2729
SDEN318161 SDEN_1455SDEN_1457SDEN_1458SDEN_1459SDEN_0277SDEN_1455SDEN_1460SDEN_1461SDEN_1462SDEN_1460SDEN_1463SDEN_1454
SBOY300268 SBO_2556SBO_2555SBO_2554SBO_2553SBO_2548SBO_4466SBO_2552SBO_2551SBO_2550SBO_1446SBO_2549SBO_2557
SBAL402882 SHEW185_2389SHEW185_2387SHEW185_2386SHEW185_2385SHEW185_2379SHEW185_2389SHEW185_2384SHEW185_2383SHEW185_2382SHEW185_2384SHEW185_2381SHEW185_2390
SBAL399599 SBAL195_2505SBAL195_2503SBAL195_2502SBAL195_2501SBAL195_2495SBAL195_2505SBAL195_2500SBAL195_2499SBAL195_2498SBAL195_2500SBAL195_2497SBAL195_2506
RSOL267608 RSC1161RSC1018RSC1019RSC1020RSC1026RSC1161RSC1021RSC1023RSC1024RSC1021RSC1025RSC1160
RRIC452659 RRIOWA_0200RRIOWA_0870RRIOWA_0868RRIOWA_0867RRIOWA_0200RRIOWA_0866RRIOWA_0320RRIOWA_0288RRIOWA_0866RRIOWA_0318
RRIC392021 A1G_00920A1G_04135A1G_04125A1G_04120A1G_00920A1G_04115A1G_01505A1G_01335A1G_04115A1G_01495
RMET266264 RMET_1079RMET_1024RMET_1025RMET_1026RMET_1031RMET_1079RMET_1027RMET_1028RMET_1029RMET_1027RMET_1030RMET_1078
RMAS416276 RMA_0167RMA_0825RMA_0823RMA_0822RMA_0167RMA_0821RMA_0271RMA_0246RMA_0821RMA_0269
RFER338969 RFER_2891RFER_2176RFER_2177RFER_2178RFER_2179RFER_2180RFER_2181RFER_2179RFER_2182RFER_2892
RFEL315456 RF_1172RF_0847RF_0845RF_0844RF_1172RF_0843RF_1062RF_1084RF_0843RF_1064
REUT381666 H16_A1215H16_A1157H16_A1158H16_A1159H16_A1165H16_A1215H16_A1160H16_A1162H16_A1163H16_A1160H16_A1164H16_A1214
REUT264198 REUT_A1116REUT_A1057REUT_A1058REUT_A1059REUT_A1065REUT_A1116REUT_A1060REUT_A1062REUT_A1063REUT_A1060REUT_A1064REUT_A1115
RCON272944 RC0160RC0732RC0730RC0729RC0160RC0728RC0263RC0233RC0728RC0261
RBEL391896 A1I_01395A1I_03920A1I_03930A1I_03935A1I_01395A1I_03940A1I_02940A1I_01755A1I_03940A1I_02955
RBEL336407 RBE_1177RBE_0949RBE_0947RBE_0946RBE_1177RBE_0945RBE_0512RBE_1113RBE_0945RBE_0514
RAKA293614 A1C_00885A1C_03970A1C_03960A1C_03955A1C_00885A1C_03950A1C_01480A1C_01330A1C_03950A1C_01470
PSYR223283 PSPTO_1420PSPTO_1422PSPTO_1423PSPTO_1424PSPTO_1429PSPTO_1420PSPTO_1425PSPTO_1426PSPTO_1427PSPTO_1425PSPTO_1428PSPTO_1419
PSYR205918 PSYR_1234PSYR_1236PSYR_1237PSYR_1238PSYR_1243PSYR_1234PSYR_1239PSYR_1240PSYR_1241PSYR_1239PSYR_1242PSYR_1233
PSTU379731 PST_3045PST_3043PST_3042PST_3041PST_3036PST_3045PST_3040PST_3039PST_3038PST_3040PST_3037PST_3046
PSP56811 PSYCPRWF_1243PSYCPRWF_1628PSYCPRWF_1629PSYCPRWF_1630PSYCPRWF_0641PSYCPRWF_1243PSYCPRWF_1631PSYCPRWF_1632PSYCPRWF_1633PSYCPRWF_1631PSYCPRWF_1634PSYCPRWF_0412
PSP312153 PNUC_0853PNUC_1494PNUC_1493PNUC_1492PNUC_0853PNUC_1491PNUC_1490PNUC_1489PNUC_1491PNUC_1488PNUC_0854
PSP296591 BPRO_3292BPRO_2177BPRO_2178BPRO_2179BPRO_3292BPRO_2180BPRO_2181BPRO_2182BPRO_2180BPRO_2183BPRO_3293
PPUT76869 PPUTGB1_0882PPUTGB1_0884PPUTGB1_0885PPUTGB1_0886PPUTGB1_0891PPUTGB1_0882PPUTGB1_0887PPUTGB1_0888PPUTGB1_0889PPUTGB1_0887PPUTGB1_0890PPUTGB1_0881
PPUT351746 PPUT_0869PPUT_0871PPUT_0872PPUT_0873PPUT_0878PPUT_0869PPUT_0874PPUT_0875PPUT_0876PPUT_0874PPUT_0877PPUT_0868
PPUT160488 PP_0839PP_0841PP_0842PP_0843PP_0848PP_0839PP_0844PP_0845PP_0846PP_0844PP_0847PP_0838
PPRO298386 PBPRA0748PBPRA0749PBPRA0750PBPRA0751PBPRA0756PBPRA0748PBPRA0752PBPRA0753PBPRA0754PBPRA0752PBPRA0755PBPRA0747
PNAP365044 PNAP_1381PNAP_2291PNAP_2290PNAP_1568PNAP_2288PNAP_2287PNAP_2286PNAP_1566PNAP_2285PNAP_1380
PMUL272843 PM0316PM0317PM0318PM0319PM0316PM0320PM0321PM0322PM0320PM0323PM0315
PMEN399739 PMEN_3514PMEN_3512PMEN_3511PMEN_3510PMEN_3505PMEN_3514PMEN_3509PMEN_3508PMEN_3507PMEN_3509PMEN_3506PMEN_3515
PLUM243265 PLU3285PLU3284PLU3283PLU3282PLU3277PLU3285PLU3281PLU3280PLU3279PLU2622PLU3278PLU3286
PING357804 PING_1322PING_1323PING_1324PING_1325PING_1330PING_1322PING_1326PING_1327PING_1328PING_1326PING_1329PING_1321
PHAL326442 PSHAA2673PSHAA2672PSHAA2671PSHAA2670PSHAA2673PSHAA2669PSHAA2668PSHAA2667PSHAA2669PSHAA2666PSHAA0323
PFLU220664 PFL_4968PFL_4966PFL_4965PFL_4964PFL_4959PFL_4968PFL_4963PFL_4962PFL_4961PFL_4963PFL_4960PFL_4969
PFLU216595 PFLU5071PFLU5069PFLU5068PFLU5067PFLU5062PFLU5071PFLU5066PFLU5065PFLU5064PFLU5066PFLU5063PFLU5072
PFLU205922 PFL_4615PFL_4613PFL_4612PFL_4611PFL_4606PFL_4615PFL_4610PFL_4609PFL_4608PFL_4610PFL_4607PFL_4616
PENT384676 PSEEN1006PSEEN1009PSEEN1010PSEEN1011PSEEN1016PSEEN1006PSEEN1012PSEEN1013PSEEN1014PSEEN1012PSEEN1015PSEEN1005
PCRY335284 PCRYO_1212PCRYO_1655PCRYO_1656PCRYO_1657PCRYO_0547PCRYO_1212PCRYO_1658PCRYO_1659PCRYO_1660PCRYO_1658PCRYO_1661PCRYO_0246
PATL342610 PATL_1235PATL_1237PATL_1238PATL_1239PATL_1235PATL_1240PATL_1241PATL_1242PATL_1240PATL_1243PATL_1232
PARC259536 PSYC_1178PSYC_1476PSYC_1477PSYC_1478PSYC_0559PSYC_1178PSYC_1479PSYC_1480PSYC_1481PSYC_1479PSYC_1482PSYC_0222
PAER208964 PA3817PA3815PA3814PA3813PA3808PA3817PA3812PA3811PA3810PA3812PA3809PA3818
PAER208963 PA14_14690PA14_14710PA14_14730PA14_14740PA14_14810PA14_14690PA14_14750PA14_14770PA14_14780PA14_14750PA14_14800PA14_14680
NMEN374833 NMCC_1260NMCC_1291NMCC_1293NMCC_1295NMCC_1056NMCC_1260NMCC_1296NMCC_1297NMCC_1050NMCC_1296NMCC_1054NMCC_1259
NMEN272831 NMC1284NMC1314NMC1315NMC1317NMC1076NMC1284NMC1318NMC1319NMC1070NMC1318NMC1073NMC1283
NMEN122587 NMA1560NMA1593NMA1594NMA1596NMA1347NMA1560NMA1597NMA1598NMA1340NMA1597NMA1344NMA1559
NMEN122586 NMB_1348NMB_1378NMB_1379NMB_1380NMB_1175NMB_1348NMB_1381NMB_1383NMB_1169NMB_1381NMB_1172NMB_1347
NGON242231 NGO0670NGO0637NGO0636NGO0633NGO0823NGO0670NGO0632NGO0630NGO0829NGO0632NGO0825NGO0671
MXAN246197 MXAN_2416MXAN_5001MXAN_5002MXAN_2416MXAN_5003MXAN_5004MXAN_5005MXAN_5003MXAN_5006MXAN_1914
MSUC221988 MS1728MS1727MS1726MS1724MS1719MS1728MS1723MS1722MS1721MS1723MS1720MS1729
MPET420662 MPE_A2840MPE_A2263MPE_A2262MPE_A2261MPE_A2840MPE_A2260MPE_A2259MPE_A2258MPE_A2260MPE_A2257MPE_A2841
MMAG342108 AMB2129AMB3030AMB3028AMB3027AMB3022AMB2129AMB3026AMB3025AMB3024AMB3026AMB3023AMB1286
MFLA265072 MFLA_0812MFLA_0810MFLA_0808MFLA_0807MFLA_1920MFLA_0812MFLA_0806MFLA_0805MFLA_0804MFLA_0806MFLA_0803MFLA_0813
MCAP243233 MCA_2610MCA_2883MCA_0247MCA_0248MCA_2825MCA_2610MCA_0250MCA_0251MCA_0252MCA_0250MCA_0253MCA_2609
LCHO395495 LCHO_1219LCHO_1048LCHO_1360LCHO_1361LCHO_1219LCHO_1045LCHO_1044LCHO_1364LCHO_1045LCHO_1042LCHO_1218
KPNE272620 GKPORF_B2198GKPORF_B2197GKPORF_B2196GKPORF_B2195GKPORF_B2190GKPORF_B4265GKPORF_B2194GKPORF_B2193GKPORF_B2192GKPORF_B1266GKPORF_B2191GKPORF_B2199
JSP375286 MMA_1299MMA_1251MMA_1252MMA_1253MMA_1258MMA_1299MMA_1254MMA_1255MMA_1256MMA_1254MMA_1257MMA_1298
HSOM228400 HSM_0152HSM_0153HSM_0154HSM_0155HSM_0152HSM_0156HSM_0157HSM_0158HSM_0156HSM_0159HSM_0151
HSOM205914 HS_0279HS_0280HS_0281HS_0282HS_0279HS_0283HS_0284HS_0285HS_0283HS_0286HS_0278
HINF71421 HI_0380HI_0379HI_0378HI_0377HI_0371HI_0380HI_0376HI_0375HI_0373HI_0376HI_0372HI_0937
HINF374930 CGSHIEE_01110CGSHIEE_01115CGSHIEE_01120CGSHIEE_01150CGSHIEE_01125CGSHIEE_01130CGSHIEE_01140CGSHIEE_01125CGSHIEE_01145CGSHIEE_07280
HINF281310 NTHI0500NTHI0499NTHI0498NTHI0497NTHI0491NTHI0500NTHI0496NTHI0495NTHI0493NTHI0496NTHI0492NTHI1108
HDUC233412 HD_1664HD_1080HD_1082HD_1083HD_1089HD_1664HD_1084HD_1085HD_1087HD_1084HD_1088HD_0440
HARS204773 HEAR2164HEAR2240HEAR2239HEAR2238HEAR2233HEAR2164HEAR2237HEAR2236HEAR2235HEAR2237HEAR2234HEAR2165
GVIO251221 GLR2140GLR1920GLL4384GLR1374GSR2216GLR2140GLL4382GLR4264GLL4382GLR1322
ESP42895 ENT638_3029ENT638_3028ENT638_3027ENT638_3026ENT638_3021ENT638_0563ENT638_3025ENT638_3024ENT638_3023ENT638_1760ENT638_3022ENT638_3030
EFER585054 EFER_0640EFER_0641EFER_0642EFER_0643EFER_0648EFER_4501EFER_0644EFER_0645EFER_0646EFER_1368EFER_0647EFER_0639
ECOO157 Z3799Z3798YFHOZ3796YFHJLASTYFHFYFHEHSCAYDICFDX
ECOL83334 ECS3398ECS3397ECS3396ECS3395ECS3390ECS5361ECS3394ECS3393ECS3392ECS2391ECS3391ECS3399
ECOL585397 ECED1_2963ECED1_2962ECED1_2961ECED1_2960ECED1_2955ECED1_5275ECED1_2959ECED1_2958ECED1_2957ECED1_1883ECED1_2956ECED1_2964
ECOL585057 ECIAI39_2733ECIAI39_2732ECIAI39_2731ECIAI39_2730ECIAI39_2725ECIAI39_4935ECIAI39_2729ECIAI39_2728ECIAI39_2727ECIAI39_1374ECIAI39_2726ECIAI39_2734
ECOL585056 ECUMN_2852ECUMN_2851ECUMN_2850ECUMN_2849ECUMN_2844ECUMN_5033ECUMN_2848ECUMN_2847ECUMN_2846ECUMN_1973ECUMN_2845ECUMN_2853
ECOL585055 EC55989_2817EC55989_2816EC55989_2815EC55989_2814EC55989_2809EC55989_5065EC55989_2813EC55989_2812EC55989_2811EC55989_1851EC55989_2810EC55989_2818
ECOL585035 ECS88_2708ECS88_2707ECS88_2706ECS88_2705ECS88_2700ECS88_5085ECS88_2704ECS88_2703ECS88_2702ECS88_1734ECS88_2701ECS88_2709
ECOL585034 ECIAI1_2584ECIAI1_2583ECIAI1_2582ECIAI1_2581ECIAI1_2576ECIAI1_4627ECIAI1_2580ECIAI1_2579ECIAI1_2578ECIAI1_1736ECIAI1_2577ECIAI1_2585
ECOL481805 ECOLC_1145ECOLC_1146ECOLC_1147ECOLC_1148ECOLC_1153ECOLC_3654ECOLC_1149ECOLC_1150ECOLC_1151ECOLC_1947ECOLC_1152ECOLC_1144
ECOL469008 ECBD_1152ECBD_1153ECBD_1154ECBD_1155ECBD_1160ECBD_3617ECBD_1156ECBD_1157ECBD_1158ECBD_1156ECBD_1159ECBD_1151
ECOL439855 ECSMS35_2685ECSMS35_2684ECSMS35_2683ECSMS35_2682ECSMS35_2676ECSMS35_4953ECSMS35_2681ECSMS35_2679ECSMS35_2678ECSMS35_1512ECSMS35_2677ECSMS35_2686
ECOL413997 ECB_02424ECB_02423ECB_02422ECB_02421ECB_02416ECB_04279ECB_02420ECB_02419ECB_02418ECB_01653ECB_02417ECB_02425
ECOL409438 ECSE_2819ECSE_2817ECSE_2816ECSE_2815ECSE_2810ECSE_4679ECSE_2814ECSE_2813ECSE_2812ECSE_1807ECSE_2811ECSE_2820
ECOL405955 APECO1_3993APECO1_3994APECO1_3995APECO1_3996APECO1_1977APECO1_3997APECO1_3998APECO1_3999APECO1_761APECO1_4000APECO1_3992
ECOL364106 UTI89_C2854UTI89_C2853UTI89_C2852UTI89_C2851UTI89_C2846UTI89_C5176UTI89_C2850UTI89_C2849UTI89_C2848UTI89_C1876UTI89_C2847UTI89_C2855
ECOL362663 ECP_2537ECP_2536ECP_2535ECP_2534ECP_2529ECP_2537ECP_2533ECP_2532ECP_2531ECP_1631ECP_2530ECP_2538
ECOL331111 ECE24377A_2817ECE24377A_2816ECE24377A_2815ECE24377A_2814ECE24377A_2808ECE24377A_5002ECE24377A_2813ECE24377A_2811ECE24377A_2810ECE24377A_1900ECE24377A_2809ECE24377A_2818
ECOL316407 ECK2529:JW2516:B2532ECK2528:JW2515:B2531ECK2527:JW2514:B2530ECK2526:JW2513:B2529ECK2521:JW2508:B2524ECK4395:JW4366:B4403ECK2525:JW2512:B2528ECK2524:JW2511:B2527ECK2523:JW2510:B2526ECK1680:JW1674:B1684ECK2522:JW2509:B2525ECK2530:JW2517:B2533
ECOL199310 C3058C3057C3056C3055C3049C5490C3053C3052C3051C2079C3050C3059
ECAR218491 ECA3239ECA3238ECA3237ECA3236ECA3231ECA3892ECA3235ECA3234ECA3233ECA1859ECA3232ECA3240
DARO159087 DARO_1682DARO_1948DARO_1950DARO_1951DARO_1956DARO_1682DARO_1952DARO_1953DARO_1954DARO_1952DARO_1955DARO_1681
CVIO243365 CV_3645CV_1095CV_1094CV_1093CV_1087CV_3645CV_1092CV_1091CV_1089CV_1092CV_1088CV_3644
CVES412965 COSY_0453COSY_0533COSY_0532COSY_0531COSY_0472COSY_0453COSY_0530COSY_0529COSY_0528COSY_0530COSY_0527COSY_0452
CRUT413404 RMAG_0492RMAG_0578RMAG_0577RMAG_0576RMAG_0514RMAG_0492RMAG_0575RMAG_0574RMAG_0573RMAG_0575RMAG_0572RMAG_0491
CPSY167879 CPS_1129CPS_1131CPS_1132CPS_1133CPS_4263CPS_1129CPS_1134CPS_1135CPS_1136CPS_1134CPS_1137CPS_1128
BVIE269482 BCEP1808_1986BCEP1808_2206BCEP1808_2205BCEP1808_5992BCEP1808_2199BCEP1808_1986BCEP1808_2203BCEP1808_2202BCEP1808_2201BCEP1808_5990BCEP1808_2200BCEP1808_1987
BTHA271848 BTH_I1935BTH_I1874BTH_I1875BTH_I1876BTH_I1881BTH_I1935BTH_I1877BTH_I1878BTH_I1879BTH_I1877BTH_I1880BTH_I1934
BSP36773 BCEP18194_A5390BCEP18194_A5433BCEP18194_B2412BCEP18194_A5431BCEP18194_A5426BCEP18194_A5390BCEP18194_A5430BCEP18194_A5429BCEP18194_A5428BCEP18194_A5430BCEP18194_A5427BCEP18194_A5391
BPSE320373 BURPS668_2552BURPS668_2600BURPS668_2599BURPS668_2598BURPS668_2593BURPS668_2552BURPS668_2597BURPS668_2596BURPS668_2595BURPS668_2597BURPS668_2594BURPS668_2553
BPSE320372 BURPS1710B_A2920BURPS1710B_A2966BURPS1710B_A2965BURPS1710B_A2964BURPS1710B_A2959BURPS1710B_A2920BURPS1710B_A2963BURPS1710B_A2962BURPS1710B_A2961BURPS1710B_A2963BURPS1710B_A2960BURPS1710B_A2921
BPSE272560 BPSL2249BPSL2290BPSL2289BPSL2288BPSL2283BPSL2249BPSL2287BPSL2286BPSL2285BPSL2287BPSL2284BPSL2250
BPET94624 BPET3458BPET2778BPET2777BPET2776BPET2771BPET3458BPET2775BPET2774BPET2773BPET2775BPET2772BPET3457
BPER257313 BP1901BP1798BP1799BP1800BP1805BP1901BP1801BP1802BP1803BP1801BP1804BP1902
BPAR257311 BPP2276BPP2027BPP2028BPP2029BPP2034BPP2276BPP2030BPP2031BPP2032BPP2030BPP3861BPP2277
BMAL320389 BMA10247_1440BMA10247_1490BMA10247_1489BMA10247_1488BMA10247_1483BMA10247_1440BMA10247_1487BMA10247_1486BMA10247_1485BMA10247_1487BMA10247_1484BMA10247_1441
BMAL320388 BMASAVP1_A2167BMASAVP1_A2218BMASAVP1_A2217BMASAVP1_A2216BMASAVP1_A2211BMASAVP1_A2167BMASAVP1_A2215BMASAVP1_A2214BMASAVP1_A2213BMASAVP1_A2215BMASAVP1_A2212BMASAVP1_A2168
BMAL243160 BMA_1663BMA_1709BMA_1708BMA_1707BMA_1702BMA_1663BMA_1706BMA_1705BMA_1704BMA_1706BMA_1703BMA_1664
BCEN331272 BCEN2424_2084BCEN2424_2127BCEN2424_2126BCEN2424_2125BCEN2424_2120BCEN2424_2084BCEN2424_2124BCEN2424_2123BCEN2424_2122BCEN2424_2124BCEN2424_2121BCEN2424_2085
BCEN331271 BCEN_5993BCEN_5950BCEN_5951BCEN_5952BCEN_5957BCEN_5993BCEN_5953BCEN_5954BCEN_5955BCEN_5953BCEN_5956BCEN_5992
BBRO257310 BB1728BB2275BB2276BB2277BB2282BB1728BB2278BB2279BB2280BB2278BB2281BB1729
BAMB398577 BAMMC406_1989BAMMC406_2037BAMMC406_2036BAMMC406_2035BAMMC406_2030BAMMC406_1989BAMMC406_2034BAMMC406_2033BAMMC406_2032BAMMC406_2034BAMMC406_2031BAMMC406_1990
BAMB339670 BAMB_2119BAMB_2164BAMB_2163BAMB_2162BAMB_2157BAMB_2119BAMB_2161BAMB_2160BAMB_2159BAMB_2161BAMB_2158BAMB_2120
ASP76114 EBA6408EBA6404EBA6401EBA6400EBA6395EBA6408EBB230EBA6397EBA6396EBB230EBB229EBA6410
ASP62977 ACIAD2090ACIAD1405ACIAD1404ACIAD1403ACIAD0555ACIAD2090ACIAD1402ACIAD1400ACIAD1399ACIAD1402ACIAD1398ACIAD3246
ASP62928 AZO2020AZO2018AZO2016AZO2015AZO2010AZO2020AZO2014AZO2013AZO2012AZO2014AZO2011AZO2021
ASP232721 AJS_1046AJS_2145AJS_2144AJS_2143AJS_1046AJS_2142AJS_2141AJS_2140AJS_2142AJS_2139AJS_1045
ASAL382245 ASA_2614ASA_2613ASA_2612ASA_2611ASA_3041ASA_2610ASA_2608ASA_2607ASA_2610ASA_2606ASA_2649
APLE434271 APJL_0851APJL_0942APJL_0941APJL_0940APJL_0933APJL_0851APJL_0939APJL_0938APJL_0935APJL_0939APJL_0934APJL_0207
APLE416269 APL_0843APL_0932APL_0931APL_0930APL_0923APL_0843APL_0929APL_0928APL_0925APL_0929APL_0924APL_0206
AHYD196024 AHA_1745AHA_1746AHA_1747AHA_1748AHA_3020AHA_1749AHA_1750AHA_1751AHA_1749AHA_1752AHA_1710
AFER243159 AFE_2370AFE_2368AFE_2367AFE_2366AFE_2361AFE_2370AFE_2365AFE_2364AFE_2363AFE_2365AFE_2362AFE_2371
ADEH290397 ADEH_1113ADEH_0592ADEH_0593ADEH_0599ADEH_2987ADEH_0594ADEH_0595ADEH_0597ADEH_0594ADEH_0598ADEH_3387
ABAU360910 BAV2569BAV1507BAV1508BAV1509BAV1514BAV2569BAV1510BAV1511BAV1512BAV1510BAV1513BAV2568
ABAC204669 ACID345_2117ACID345_0485ACID345_0484ACID345_0483ACID345_0478ACID345_2117ACID345_1581ACID345_0481ACID345_0480ACID345_1581ACID345_0479ACID345_2060
AAVE397945 AAVE_2075AAVE_2442AAVE_2443AAVE_2444AAVE_2075AAVE_2445AAVE_2446AAVE_2447AAVE_2445AAVE_2448AAVE_2070


Organism features enriched in list (features available for 152 out of the 158 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00021241192
Arrangment:Pairs 0.001062642112
Disease:Bubonic_plague 0.000291766
Disease:Dysentery 0.000291766
Disease:Gastroenteritis 0.00014081013
Disease:Meningitis_and_septicemia 0.004486444
Endospores:No 2.494e-828211
Endospores:Yes 9.970e-6253
GC_Content_Range4:0-40 5.669e-1518213
GC_Content_Range4:40-60 6.238e-886224
GC_Content_Range4:60-100 0.007624848145
GC_Content_Range7:30-40 1.624e-818166
GC_Content_Range7:50-60 1.570e-750107
GC_Content_Range7:60-70 0.002560147134
Genome_Size_Range5:0-2 1.191e-914155
Genome_Size_Range5:2-4 8.251e-924197
Genome_Size_Range5:4-6 1.401e-1791184
Genome_Size_Range5:6-10 0.00025932347
Genome_Size_Range9:0-1 0.0023332127
Genome_Size_Range9:1-2 4.885e-713128
Genome_Size_Range9:2-3 0.000577718120
Genome_Size_Range9:3-4 0.0000139677
Genome_Size_Range9:4-5 6.849e-84796
Genome_Size_Range9:5-6 9.373e-84488
Genome_Size_Range9:6-8 0.00005452138
Gram_Stain:Gram_Neg 2.346e-25138333
Motility:No 8.177e-1013151
Motility:Yes 0.000021391267
Optimal_temp.:- 0.005719179257
Optimal_temp.:35-37 1.736e-81313
Oxygen_Req:Anaerobic 1.744e-95102
Oxygen_Req:Facultative 1.325e-1085201
Pathogenic_in:Human 0.000852871213
Pathogenic_in:No 0.000016438226
Shape:Coccus 0.0000629882
Shape:Rod 1.823e-11124347
Shape:Spiral 0.0003152134
Temp._range:Psychrophilic 0.000125389
Temp._range:Thermophilic 0.0062735335



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ORGANISMS CONTAINING AT MOST 2 GENES FROM THE GROUP:

Total number of orgs: 180
Effective number of orgs (counting one per cluster within 468 clusters): 141

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS12
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB42
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.2
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332232
TPET390874 ncbi Thermotoga petrophila RKU-11
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO2
TKOD69014 ncbi Thermococcus kodakarensis KOD12
TACI273075 ncbi Thermoplasma acidophilum DSM 17282
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4402
STOK273063 ncbi Sulfolobus tokodaii 72
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP387093 ncbi Sulfurovum sp. NBC37-12
SSOL273057 ncbi Sulfolobus solfataricus P22
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F12
SGOR29390 Streptococcus gordonii Challis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SCO ncbi Streptomyces coelicolor A3(2)2
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6392
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RALB246199 Ruminococcus albus 82
PTOR263820 ncbi Picrophilus torridus DSM 97902
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ952
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85032
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
NSP387092 ncbi Nitratiruptor sp. SB155-22
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H2
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSP189918 ncbi Mycobacterium sp. KMS2
MSP164757 ncbi Mycobacterium sp. JLS2
MSP164756 ncbi Mycobacterium sp. MCS2
MSME246196 ncbi Mycobacterium smegmatis MC2 1552
MSED399549 ncbi Metallosphaera sedula DSM 53482
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C62
MMAR426368 ncbi Methanococcus maripaludis C72
MMAR402880 ncbi Methanococcus maripaludis C52
MMAR267377 ncbi Methanococcus maripaludis S22
MLEP272631 ncbi Mycobacterium leprae TN0
MKAN190192 ncbi Methanopyrus kandleri AV192
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26612
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-32
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1972
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5502
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I2
HPYL85963 ncbi Helicobacter pylori J992
HPYL357544 ncbi Helicobacter pylori HPAG12
HPY ncbi Helicobacter pylori 266952
HBUT415426 ncbi Hyperthermus butylicus DSM 54562
HACI382638 ncbi Helicobacter acinonychis Sheeba2
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
EFAE226185 ncbi Enterococcus faecalis V5831
DSP216389 ncbi Dehalococcoides sp. BAV12
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3822
CMIC31964 ncbi Clavibacter michiganensis sepedonicus2
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3812
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130322
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3142
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131292
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C2
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD32
CCAV227941 ncbi Chlamydophila caviae GPIC1
CACE272562 ncbi Clostridium acetobutylicum ATCC 8242
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1351
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K12
ANAE240017 Actinomyces oris MG10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
ACEL351607 ncbi Acidothermus cellulolyticus 11B2
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7327   G7326   G7325   G7324   EG12311   EG12309   EG12132   EG12131   EG12130   EG11378   EG11328   EG10983   
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116 TVN0579TVN0579
TTEN273068 TTE1242TTE2465
TSP28240 TRQ2_1308
TSP1755 TETH514_1485TETH514_1164
TPSE340099 TETH39_1048TETH39_0797
TPET390874 TPET_1378
TPAL243276
TMAR243274 TM_1415
TLET416591 TLET_0717TLET_2048
TKOD69014 TK1970TK1970
TACI273075 TA1010TA1010
SWOL335541 SWOL_0490
STRO369723 STROP_3078STROP_1476
STOK273063 ST0454ST0454
STHE322159
STHE299768
STHE264199 STU0167
SSUI391296
SSUI391295
SSP387093 SUN_0006SUN_1872
SSOL273057 SSO0747SSO0747
SPYO370554 MGAS10750_SPY0242
SPYO370553 MGAS2096_SPY0264
SPYO370552 MGAS10270_SPY0245
SPYO370551 MGAS9429_SPY0247
SPYO319701 M28_SPY0240
SPYO293653 M5005_SPY0245
SPYO286636 M6_SPY0276
SPYO198466 SPYM3_0211
SPYO193567 SPS0217
SPYO186103 SPYM18_0277
SPYO160490 SPY0289
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550 SMAR_0780SMAR_0780
SGOR29390 SGO_1719
SERY405948 SACE_1803
SCO SCO1920SCO2161
SARE391037 SARE_1441
SAGA211110
SAGA208435
SAGA205921
SACI330779 SACI_0621SACI_0621
RSAL288705 RSAL33209_1585
RALB246199 GRAORF_4622GRAORF_3526
PTOR263820 PTO0329PTO0329
PRUM264731 GFRORF1146
PPEN278197
PMOB403833 PMOB_1717PMOB_1798
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591 BDI_1997BDI_2667
PAST100379
PARS340102
PAER178306
PACN267747 PPA0700
PABY272844
NSP387092 NIS_1121NIS_1712
MTUB419947 MRA_1295
MTUB336982 TBFG_11313
MTHE187420 MTH1849MTH1849
MTBRV RV1287
MTBCDC MT1325
MSYN262723
MSP189918 MKMS_3989MKMS_3279
MSP164757 MJLS_3930MJLS_3228
MSP164756 MMCS_3915MMCS_3217
MSME246196 MSMEG_4974MSMEG_4272
MSED399549 MSED_0066MSED_0066
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR444158 MMARC6_0618MMARC6_0618
MMAR426368 MMARC7_1335MMARC7_1335
MMAR402880 MMARC5_1340MMARC5_1340
MMAR267377 MMP0334MMP0334
MLEP272631
MKAN190192 MK0519MK0519
MJAN243232 MJ_1476MJ_1476
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MBOV410289 BCG_1346
MBOV233413 MB1318
MAVI243243 MAV_3314
MART243272
MAEO419665 MAEO_0071MAEO_0071
LXYL281090 LXX15060
LSAK314315
LREU557436
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277 LBJ_0433LBJ_0165
LBOR355276 LBL_2644LBL_2918
LACI272621
KRAD266940 KRAD_1553
IHOS453591 IGNI_0127IGNI_0127
HPYL85963 JHP0206JHP0207
HPYL357544 HPAG1_0222HPAG1_0223
HPY HP0220HP0221
HBUT415426 HBUT_1655HBUT_1655
HACI382638 HAC_1498HAC_1497
FNOD381764 FNOD_1771
FMAG334413 FMG_0624
EFAE226185 EF_2391
DSP216389 DEHABAV1_1341DEHABAV1_0835
CTRA471473
CTRA471472
CSUL444179
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMUR243161
CMIC443906 CMM_1843CMM_2799
CMIC31964 CMS1389CMS3003
CMAQ397948
CJEJ407148 C8J_0217
CJEJ360109 JJD26997_0237
CJEJ354242 CJJ81176_0264
CJEJ195099 CJE_0290
CJEJ192222 CJ0239C
CJEI306537
CHOM360107 CHAB381_0890CHAB381_0043
CGLU196627 CG1760CG0640
CFET360106 CFF8240_1697
CFEL264202
CEFF196164 CE1682CE0558
CDIP257309 DIP1291DIP1631
CDES477974 DAUD_1557DAUD_0907
CCUR360105 CCV52592_1771
CCON360104 CCC13826_1162
CCHL340177 CAG_0207CAG_0161
CCAV227941 CCA_00215
CACE272562 CAC1675CAC2234
CABO218497
BTUR314724 BT0518
BTHE226186 BT_2801
BLON206672
BHER314723 BH0518
BGAR290434 BG0529
BFRA295405 BF4389
BFRA272559 BF4187
BBUR224326 BB_0518
BAFZ390236 BAPKO_0545
AYEL322098
AURANTIMONAS
ASP1667 ARTH_1998
APER272557 APE0555APE0555
ANAE240017
ALAI441768 ACL_1214
ACEL351607 ACEL_0954ACEL_1405
AAUR290340 AAUR_1435


Organism features enriched in list (features available for 168 out of the 180 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 4.452e-64592
Arrangment:Pairs 0.008830623112
Disease:Pharyngitis 0.000042188
Disease:Wide_range_of_infections 8.954e-71111
Disease:bronchitis_and_pneumonitis 0.000042188
Endospores:No 1.108e-23114211
Endospores:Yes 0.0031163753
GC_Content_Range4:0-40 4.053e-890213
GC_Content_Range4:40-60 0.004569452224
GC_Content_Range4:60-100 0.000249526145
GC_Content_Range7:30-40 2.007e-671166
GC_Content_Range7:50-60 1.397e-612107
GC_Content_Range7:60-70 0.000034821134
Genome_Size_Range5:0-2 7.290e-2596155
Genome_Size_Range5:4-6 3.700e-1417184
Genome_Size_Range5:6-10 0.0014216547
Genome_Size_Range9:0-1 6.918e-72027
Genome_Size_Range9:1-2 8.865e-1776128
Genome_Size_Range9:3-4 0.00079691177
Genome_Size_Range9:4-5 4.917e-7996
Genome_Size_Range9:5-6 1.167e-6888
Genome_Size_Range9:6-8 0.0010597338
Gram_Stain:Gram_Neg 4.334e-1357333
Gram_Stain:Gram_Pos 7.232e-1175150
Habitat:Host-associated 0.000075479206
Habitat:Multiple 0.006273940178
Habitat:Specialized 0.00328562453
Habitat:Terrestrial 0.0016626231
Motility:No 1.128e-1075151
Motility:Yes 4.089e-653267
Optimal_temp.:- 0.000145355257
Optimal_temp.:30-35 0.002702867
Optimal_temp.:37 0.000029048106
Optimal_temp.:85 0.006720844
Oxygen_Req:Aerobic 0.000402937185
Oxygen_Req:Anaerobic 0.001150342102
Oxygen_Req:Microaerophilic 0.00297351118
Pathogenic_in:Animal 0.0004430866
Pathogenic_in:Swine 0.001903755
Salinity:Non-halophilic 0.000069647106
Shape:Coccus 2.171e-64282
Shape:Irregular_coccus 0.00160021117
Shape:Rod 5.285e-969347
Shape:Sphere 5.437e-61519
Shape:Spiral 0.00003012134
Temp._range:Hyperthermophilic 6.536e-81923



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 52
Effective number of orgs (counting one per cluster within 468 clusters): 42

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA 1.021e-773212
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica) 1.483e-775512
RAKA293614 ncbi Rickettsia akari Hartford 7.456e-741610
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith 7.456e-741610
RRIC452659 ncbi Rickettsia rickettsii Iowa 9.011e-742410
RCON272944 ncbi Rickettsia conorii Malish 7 1.060e-643110
RMAS416276 ncbi Rickettsia massiliae MTU5 1.332e-644110
RBEL391896 ncbi Rickettsia bellii OSU 85-389 2.158e-646310
RFEL315456 ncbi Rickettsia felis URRWXCal2 3.085e-648010
RBEL336407 ncbi Rickettsia bellii RML369-C 3.350e-648410
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas 6.550e-63579
RCAN293613 ncbi Rickettsia canadensis McKiel 0.00002014059
NGON242231 ncbi Neisseria gonorrhoeae FA 1090 0.0000360119012
NMEN374833 ncbi Neisseria meningitidis 053442 0.0000472121712
NMEN122586 ncbi Neisseria meningitidis MC58 0.0000526122812
NMEN272831 ncbi Neisseria meningitidis FAM18 0.0000563123512
NMEN122587 ncbi Neisseria meningitidis Z2491 0.0000645124912
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 23270 0.0001036129912
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden 0.00011383378
PARC259536 ncbi Psychrobacter arcticus 273-4 0.0001168131212
ERUM302409 ncbi Ehrlichia ruminantium Gardel 0.00012193408
HDUC233412 ncbi Haemophilus ducreyi 35000HP 0.0001738135612
ECAN269484 ncbi Ehrlichia canis Jake 0.00017483568
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin345 0.0003324143112
PCRY335284 ncbi Psychrobacter cryohalolentis K5 0.0004268146112
MMAG342108 ncbi Magnetospirillum magneticum AMB-1 0.0004558146912
PSP56811 Psychrobacter sp. 0.0005321148812
MFLA265072 ncbi Methylobacillus flagellatus KT 0.0005956150212
TDEN292415 ncbi Thiobacillus denitrificans ATCC 25259 0.0006150150612
MCAP243233 ncbi Methylococcus capsulatus Bath 0.0006299150912
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC1062 0.00066166039
HINF281310 ncbi Haemophilus influenzae 86-028NP 0.0010875157912
HINF71421 ncbi Haemophilus influenzae Rd KW20 0.0013140160412
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-1 0.0017347122411
APHA212042 ncbi Anaplasma phagocytophilum HZ 0.00195983287
SSP321327 ncbi Synechococcus sp. JA-3-3Ab 0.002447595010
HARS204773 ncbi Herminiimonas arsenicoxydans 0.0025717169612
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13) 0.002653395810
AMAR234826 ncbi Anaplasma marginale St. Maries 0.00275843457
ASP76114 ncbi Aromatoleum aromaticum EbN1 0.0028795171212
ASP62977 ncbi Acinetobacter sp. ADP1 0.0031761172612
BPER257313 ncbi Bordetella pertussis Tohama I 0.0038816175512
DARO159087 ncbi Dechloromonas aromatica RCB 0.0045402177812
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL03 0.0055533180812
APLE416269 ncbi Actinobacillus pleuropneumoniae L20 0.0058563181612
JSP375286 ncbi Janthinobacterium sp. Marseille 0.0059739181912
RTYP257363 ncbi Rickettsia typhi Wilmington 0.00608173887
RPRO272947 ncbi Rickettsia prowazekii Madrid E 0.00618763897
NSEN222891 ncbi Neorickettsia sennetsu Miyayama 0.00639012506
ABAU360910 ncbi Bordetella avium 197N 0.0077617185912
ASP62928 ncbi Azoarcus sp. BH72 0.0088853188012
BPAR257311 ncbi Bordetella parapertussis 12822 0.0097151189412


Names of the homologs of the genes in the group in each of these orgs
  G7327   G7326   G7325   G7324   EG12311   EG12309   EG12132   EG12131   EG12130   EG11378   EG11328   EG10983   
CVES412965 COSY_0453COSY_0533COSY_0532COSY_0531COSY_0472COSY_0453COSY_0530COSY_0529COSY_0528COSY_0530COSY_0527COSY_0452
CRUT413404 RMAG_0492RMAG_0578RMAG_0577RMAG_0576RMAG_0514RMAG_0492RMAG_0575RMAG_0574RMAG_0573RMAG_0575RMAG_0572RMAG_0491
RAKA293614 A1C_00885A1C_03970A1C_03960A1C_03955A1C_00885A1C_03950A1C_01480A1C_01330A1C_03950A1C_01470
RRIC392021 A1G_00920A1G_04135A1G_04125A1G_04120A1G_00920A1G_04115A1G_01505A1G_01335A1G_04115A1G_01495
RRIC452659 RRIOWA_0200RRIOWA_0870RRIOWA_0868RRIOWA_0867RRIOWA_0200RRIOWA_0866RRIOWA_0320RRIOWA_0288RRIOWA_0866RRIOWA_0318
RCON272944 RC0160RC0732RC0730RC0729RC0160RC0728RC0263RC0233RC0728RC0261
RMAS416276 RMA_0167RMA_0825RMA_0823RMA_0822RMA_0167RMA_0821RMA_0271RMA_0246RMA_0821RMA_0269
RBEL391896 A1I_01395A1I_03920A1I_03930A1I_03935A1I_01395A1I_03940A1I_02940A1I_01755A1I_03940A1I_02955
RFEL315456 RF_1172RF_0847RF_0845RF_0844RF_1172RF_0843RF_1062RF_1084RF_0843RF_1064
RBEL336407 RBE_1177RBE_0949RBE_0947RBE_0946RBE_1177RBE_0945RBE_0512RBE_1113RBE_0945RBE_0514
ECHA205920 ECH_0628ECH_0629ECH_0630ECH_0908ECH_0631ECH_0632ECH_0633ECH_0631ECH_0634
RCAN293613 A1E_00605A1E_02335A1E_02340A1E_00605A1E_02345A1E_01045A1E_00900A1E_02345A1E_01035
NGON242231 NGO0670NGO0637NGO0636NGO0633NGO0823NGO0670NGO0632NGO0630NGO0829NGO0632NGO0825NGO0671
NMEN374833 NMCC_1260NMCC_1291NMCC_1293NMCC_1295NMCC_1056NMCC_1260NMCC_1296NMCC_1297NMCC_1050NMCC_1296NMCC_1054NMCC_1259
NMEN122586 NMB_1348NMB_1378NMB_1379NMB_1380NMB_1175NMB_1348NMB_1381NMB_1383NMB_1169NMB_1381NMB_1172NMB_1347
NMEN272831 NMC1284NMC1314NMC1315NMC1317NMC1076NMC1284NMC1318NMC1319NMC1070NMC1318NMC1073NMC1283
NMEN122587 NMA1560NMA1593NMA1594NMA1596NMA1347NMA1560NMA1597NMA1598NMA1340NMA1597NMA1344NMA1559
AFER243159 AFE_2370AFE_2368AFE_2367AFE_2366AFE_2361AFE_2370AFE_2365AFE_2364AFE_2363AFE_2365AFE_2362AFE_2371
ERUM254945 ERWE_CDS_04280ERWE_CDS_04310ERWE_CDS_04320ERWE_CDS_01970ERWE_CDS_04340ERWE_CDS_05770ERWE_CDS_04330ERWE_CDS_04360
PARC259536 PSYC_1178PSYC_1476PSYC_1477PSYC_1478PSYC_0559PSYC_1178PSYC_1479PSYC_1480PSYC_1481PSYC_1479PSYC_1482PSYC_0222
ERUM302409 ERGA_CDS_04240ERGA_CDS_04250ERGA_CDS_04260ERGA_CDS_01920ERGA_CDS_04280ERGA_CDS_05670ERGA_CDS_04270ERGA_CDS_04300
HDUC233412 HD_1664HD_1080HD_1082HD_1083HD_1089HD_1664HD_1084HD_1085HD_1087HD_1084HD_1088HD_0440
ECAN269484 ECAJ_0411ECAJ_0410ECAJ_0409ECAJ_0197ECAJ_0407ECAJ_0406ECAJ_0408ECAJ_0405
ABAC204669 ACID345_2117ACID345_0485ACID345_0484ACID345_0483ACID345_0478ACID345_2117ACID345_1581ACID345_0481ACID345_0480ACID345_1581ACID345_0479ACID345_2060
PCRY335284 PCRYO_1212PCRYO_1655PCRYO_1656PCRYO_1657PCRYO_0547PCRYO_1212PCRYO_1658PCRYO_1659PCRYO_1660PCRYO_1658PCRYO_1661PCRYO_0246
MMAG342108 AMB2129AMB3030AMB3028AMB3027AMB3022AMB2129AMB3026AMB3025AMB3024AMB3026AMB3023AMB1286
PSP56811 PSYCPRWF_1243PSYCPRWF_1628PSYCPRWF_1629PSYCPRWF_1630PSYCPRWF_0641PSYCPRWF_1243PSYCPRWF_1631PSYCPRWF_1632PSYCPRWF_1633PSYCPRWF_1631PSYCPRWF_1634PSYCPRWF_0412
MFLA265072 MFLA_0812MFLA_0810MFLA_0808MFLA_0807MFLA_1920MFLA_0812MFLA_0806MFLA_0805MFLA_0804MFLA_0806MFLA_0803MFLA_0813
TDEN292415 TBD_1161TBD_1163TBD_1164TBD_1165TBD_1170TBD_1161TBD_1166TBD_1167TBD_1168TBD_1166TBD_1169TBD_1160
MCAP243233 MCA_2610MCA_2883MCA_0247MCA_0248MCA_2825MCA_2610MCA_0250MCA_0251MCA_0252MCA_0250MCA_0253MCA_2609
CPEL335992 SAR11_1146SAR11_0738SAR11_0743SAR11_1146SAR11_0745SAR11_0368SAR11_0745SAR11_0626SAR11_0581
HINF281310 NTHI0500NTHI0499NTHI0498NTHI0497NTHI0491NTHI0500NTHI0496NTHI0495NTHI0493NTHI0496NTHI0492NTHI1108
HINF71421 HI_0380HI_0379HI_0378HI_0377HI_0371HI_0380HI_0376HI_0375HI_0373HI_0376HI_0372HI_0937
PSP312153 PNUC_0853PNUC_1494PNUC_1493PNUC_1492PNUC_0853PNUC_1491PNUC_1490PNUC_1489PNUC_1491PNUC_1488PNUC_0854
APHA212042 APH_0674APH_0675APH_0977APH_0676APH_0677APH_0346APH_0679
SSP321327 CYA_1953CYA_0423CYA_1826CYA_1825CYA_1953CYA_1655CYA_0130CYA_1655CYA_1946CYA_2675
HARS204773 HEAR2164HEAR2240HEAR2239HEAR2238HEAR2233HEAR2164HEAR2237HEAR2236HEAR2235HEAR2237HEAR2234HEAR2165
SSP321332 CYB_2783CYB_2499CYB_0419CYB_0420CYB_2783CYB_1638CYB_2781CYB_1638CYB_0815CYB_2170
AMAR234826 AM656AM655AM654AM299AM652AM842AM650
ASP76114 EBA6408EBA6404EBA6401EBA6400EBA6395EBA6408EBB230EBA6397EBA6396EBB230EBB229EBA6410
ASP62977 ACIAD2090ACIAD1405ACIAD1404ACIAD1403ACIAD0555ACIAD2090ACIAD1402ACIAD1400ACIAD1399ACIAD1402ACIAD1398ACIAD3246
BPER257313 BP1901BP1798BP1799BP1800BP1805BP1901BP1801BP1802BP1803BP1801BP1804BP1902
DARO159087 DARO_1682DARO_1948DARO_1950DARO_1951DARO_1956DARO_1682DARO_1952DARO_1953DARO_1954DARO_1952DARO_1955DARO_1681
APLE434271 APJL_0851APJL_0942APJL_0941APJL_0940APJL_0933APJL_0851APJL_0939APJL_0938APJL_0935APJL_0939APJL_0934APJL_0207
APLE416269 APL_0843APL_0932APL_0931APL_0930APL_0923APL_0843APL_0929APL_0928APL_0925APL_0929APL_0924APL_0206
JSP375286 MMA_1299MMA_1251MMA_1252MMA_1253MMA_1258MMA_1299MMA_1254MMA_1255MMA_1256MMA_1254MMA_1257MMA_1298
RTYP257363 RT0473RT0472RT0471RT0191RT0176RT0471RT0189
RPRO272947 RP486RP485RP484RP201RP185RP484RP199
NSEN222891 NSE_0304NSE_0303NSE_0302NSE_0581NSE_0299NSE_0297
ABAU360910 BAV2569BAV1507BAV1508BAV1509BAV1514BAV2569BAV1510BAV1511BAV1512BAV1510BAV1513BAV2568
ASP62928 AZO2020AZO2018AZO2016AZO2015AZO2010AZO2020AZO2014AZO2013AZO2012AZO2014AZO2011AZO2021
BPAR257311 BPP2276BPP2027BPP2028BPP2029BPP2034BPP2276BPP2030BPP2031BPP2032BPP2030BPP3861BPP2277


Organism features enriched in list (features available for 51 out of the 52 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Fibrinous_and_necrotizing_pleuropneumonia 0.007515322
Disease:Meningitis_and_septicemia 0.000052544
Disease:Respiratory_deseases 0.007515322
Disease:Rocky_Mountain_Spotted_Fever 0.000633833
Disease:epidemic_typhus 0.007515322
Disease:speticemia 0.007515322
Endospores:No 1.674e-73211
Genome_Size_Range5:0-2 0.000534424155
Genome_Size_Range5:4-6 0.00404538184
Genome_Size_Range9:1-2 0.000216822128
Genome_Size_Range9:5-6 0.0015819188
Gram_Stain:Gram_Neg 0.000050242333
Habitat:Host-associated 0.000066131206
Habitat:Multiple 0.00234017178
Motility:No 0.00603276151
Motility:Yes 8.710e-69267
Optimal_temp.:- 0.005175731257
Optimal_temp.:35-37 2.528e-91013
Oxygen_Req:Aerobic 0.006764624185
Oxygen_Req:Anaerobic 0.00891423102
Oxygen_Req:Facultative 0.007353810201
Pathogenic_in:Porcine 0.007515322
Shape:Pleomorphic_coccus 0.007515322



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181360.6243
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761180.6012
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911220.5886
AST-PWY (arginine degradation II (AST pathway))120910.5666
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001520.5605
PWY-5913 (TCA cycle variation IV)3011490.5365
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251250.5218
PWY-1269 (CMP-KDO biosynthesis I)3251530.5212
GLYCOCAT-PWY (glycogen degradation I)2461300.5103
PWY-5918 (heme biosynthesis I)2721360.4985
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911410.4969
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481550.4959
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961420.4945
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901400.4915
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951110.4897
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861380.4847
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91690.4797
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81640.4767
GALACTITOLCAT-PWY (galactitol degradation)73600.4759
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831040.4665
PWY-5386 (methylglyoxal degradation I)3051400.4624
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149910.4602
PWY-4041 (γ-glutamyl cycle)2791320.4544
LIPASYN-PWY (phospholipases)2121110.4457
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911040.4446
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491220.4433
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491220.4433
GLUCONSUPER-PWY (D-gluconate degradation)2291160.4432
DAPLYSINESYN-PWY (lysine biosynthesis I)3421460.4394
PWY-6196 (serine racemization)102690.4300
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50440.4253
GLUCARDEG-PWY (D-glucarate degradation I)152880.4248
PWY0-981 (taurine degradation IV)106700.4233
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391430.4224
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301130.4179
PWY-3162 (tryptophan degradation V (side chain pathway))94640.4139
GLUTDEG-PWY (glutamate degradation II)1941010.4127
KDOSYN-PWY (KDO transfer to lipid IVA I)180960.4098
PWY-5148 (acyl-CoA hydrolysis)2271110.4096
P601-PWY (D-camphor degradation)95640.4095
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551190.4076
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)179950.4044
REDCITCYC (TCA cycle variation II)174930.4019



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7326   G7325   G7324   EG12311   EG12309   EG12132   EG12131   EG12130   EG11378   EG11328   EG10983   
G73270.9995820.9994790.9993290.9992110.9999950.999390.9993990.9991450.9992050.9993390.999754
G73260.999920.9997930.9994360.9993450.9997580.9997120.9995860.9996680.9996080.999374
G73250.9999310.9994430.9991730.9998030.9997540.9996560.9997110.9996730.999343
G73240.9994760.9989350.9998450.9997890.9996820.9997820.9996860.999184
EG123110.9988270.9995130.9995590.999610.9993070.9996730.999142
EG123090.9991120.9990880.998630.99910.9990320.999637
EG121320.9998260.9996660.9999580.9996760.998973
EG121310.999830.9997340.9998180.999284
EG121300.9995370.9997950.999092
EG113780.9995810.99851
EG113280.998961
EG10983



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PAIRWISE BLAST SCORES:

  G7327   G7326   G7325   G7324   EG12311   EG12309   EG12132   EG12131   EG12130   EG11378   EG11328   EG10983   
G73270.0f0----1.7e-16------
G7326-0.0f0----------
G7325--0.0f0---------
G7324---0.0f0--------
EG12311----0.0f0-------
EG123094.1e-13----0.0f0------
EG12132------0.0f0--2.2e-21--
EG12131-------0.0f0----
EG12130--------0.0f0---
EG11378------1.7e-23--0.0f0--
EG11328----------0.0f0-
EG10983-----------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10983 EG11328 EG12130 EG12131 EG12132 EG12311 G7324 G7325 G7326 G7327 (centered at G7324)
EG11378 (centered at EG11378)
EG12309 (centered at EG12309)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7327   G7326   G7325   G7324   EG12311   EG12309   EG12132   EG12131   EG12130   EG11378   EG11328   EG10983   
338/623337/623326/623366/623140/623334/623316/623170/623308/623300/623266/623376/623
AAEO224324:0:Tyes--0106-------882
AAUR290340:2:Tyes-----------0
AAVE397945:0:Tyes5365366367-53683693703683710
ABAC204669:0:Tyes165276501652110932110911594
ABAU360910:0:Tyes106401271064345361063
ABOR393595:0:Tyes32317101709--15621706-11417060322
ABUT367737:0:Tyes-1723167168-------0
ACAU438753:0:Tyes1390----13902339-198315029610
ACEL351607:0:Tyes------0----450
ACRY349163:8:Tyes0----0867-242-363305
ADEH290397:0:Tyes523-0172418235262823
AEHR187272:0:Tyes61612530--616618-1266618-615
AFER243159:0:Tyes9765094324110
AFUL224325:0:Tyes1595-0369-1595------
AHYD196024:0:Tyes35363738-127939404139420
ALAI441768:0:Tyes---0--------
AMAR234826:0:Tyes-2622612600--259388-257-
AMAR329726:9:Tyes103725371889--04941---36813205
AMET293826:0:Tyes-012--------
AORE350688:0:Tyes-210--------
APER272557:0:Tyes0----0------
APHA212042:0:Tyes--310311600-3123130-315-
APLE416269:0:Tyes6397307297287216397277267237277220
APLE434271:0:Tno6137067057046976137037026997036980
ASAL382245:5:Tyes8765-4144214042
ASP1667:3:Tyes----------0-
ASP232721:2:Tyes1105410531052-1105110501049105110480
ASP62928:0:Tyes108650104324111
ASP62977:0:Tyes1456819818817014568168158148168132516
ASP76114:2:Tyes108650104324111
AVAR240292:3:Tyes975269703491-9753515-4853515-550
BABO262698:0:Tno-0----------
BABO262698:1:Tno233----2330-1112072723
BAFZ390236:2:Fyes--------0---
BAMB339670:3:Tno045444338042414042391
BAMB398577:3:Tno048474641045444345421
BAMY326423:0:Tyes-1009-1522--1473--1473-0
BANT260799:0:Tno-168116802258------0-
BANT261594:2:Tno-169316922244------0-
BANT568206:2:Tyes-277927783353------0-
BANT592021:2:Tno-177517742347------0-
BAPH198804:0:Tyes--455456--04574580459154
BAPH372461:0:Tyes--311312---313-031598
BBAC264462:0:Tyes2184-1---0---24531997
BBAC360095:0:Tyes620----620552-1083552-0
BBRO257310:0:Tyes056156256356805645655665645671
BBUR224326:21:Fno--------0---
BCAN483179:0:Tno-0----------
BCAN483179:1:Tno262----2620-1178085768
BCEN331271:0:Tno430127433453642
BCEN331272:3:Tyes043424136040393840371
BCER226900:1:Tyes-1559-2131------01130
BCER288681:0:Tno-161216112195------01190
BCER315749:1:Tyes-440439883-----854-0
BCER405917:1:Tyes-158015792190------01123
BCER572264:1:Tno-161316122184------0-
BCIC186490:0:Tyes--1---421--421-0
BCLA66692:0:Tyes-1283-2691------02108
BFRA272559:1:Tyes-----------0
BFRA295405:0:Tno-----------0
BGAR290434:2:Fyes--------0---
BHAL272558:0:Tyes-012228-------1380
BHEN283166:0:Tyes730----730875-0875-1322
BHER314723:0:Fyes--------0---
BJAP224911:0:Fyes5106----51064105-041055245850
BLIC279010:0:Tyes-116011591704-----1657-0
BMAL243160:1:Tno041403934038373638351
BMAL320388:1:Tno049484742046454446431
BMAL320389:1:Tyes048474641045444345421
BMEL224914:0:Tno-0----------
BMEL224914:1:Tno485----485731-17127906530
BMEL359391:1:Tno223----2230-1069070692
BOVI236:0:Tyes-0----------
BOVI236:1:Tyes201----2010-985055635
BPAR257311:0:Tno239012723934531759240
BPER257313:0:Tyes830127833453684
BPET94624:0:Tyes707765070743241706
BPSE272560:1:Tyes040393833037363537341
BPSE320372:1:Tno046454439043424143401
BPSE320373:1:Tno047464540044434244411
BPUM315750:0:Tyes-101410131559--1512----0
BQUI283165:0:Tyes499----499634-0634-989
BSP107806:2:Tyes--472473---4744750476159
BSP36773:1:Tyes--0---------
BSP36773:2:Tyes043-4136040393840371
BSP376:0:Tyes2443----24434983-031944657894
BSUB:0:Tyes-133213311890--1836--1836-0
BSUI204722:0:Tyes-0----------
BSUI204722:1:Tyes252----2520-1147085748
BSUI470137:0:Tno-157---------0
BSUI470137:1:Tno259----2590-959089-
BTHA271848:1:Tno610127613453660
BTHE226186:0:Tyes-----------0
BTHU281309:1:Tno-156915682120------01143
BTHU412694:1:Tno-140714061938------0-
BTRI382640:1:Tyes962----9621166-01166-1833
BTUR314724:0:Fyes--------0---
BVIE269482:5:Tyes---2-----0--
BVIE269482:7:Tyes0219218-2120216215214-2131
BWEI315730:4:Tyes-160816072182------01156
BXEN266265:1:Tyes--01--3-435-
CACE272562:1:Tyes-0550---------
CAULO:0:Tyes25471879---25471871-0187135663305
CBEI290402:0:Tyes-64001--------
CBLO203907:0:Tyes--415---241-0241-416
CBLO291272:0:Tno--430---247-0247-431
CBOT36826:1:Tno-013701369--------
CBOT441770:0:Tyes-012731272--------
CBOT441771:0:Tno-011921191--------
CBOT441772:1:Tno-013411340--------
CBOT498213:1:Tno-013781377--------
CBOT508765:1:Tyes-012--------
CBOT515621:2:Tyes-015541553--------
CBOT536232:0:Tno-014971496--------
CBUR227377:1:Tyes3-10-3--155217-5
CBUR360115:1:Tno3-10-3--152218-4
CBUR434922:2:Tno3-10-3--146209-4
CCAV227941:1:Tyes0-----------
CCHL340177:0:Tyes---46-------0
CCON360104:2:Tyes---0--------
CCUR360105:0:Tyes---0--------
CDES477974:0:Tyes-6610---------
CDIF272563:1:Tyes-012--------
CDIP257309:0:Tyes---0--338-----
CEFF196164:0:Fyes---1145------0-
CFET360106:0:Tyes---0--------
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