CANDIDATE ID: 70

CANDIDATE ID: 70

NUMBER OF GENES: 12
AVERAGE SCORE:    9.9956964e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    8.3333333e-2

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7306 (hyfI) (b2489)
   Products of gene:
     - MONOMER0-151 (hydrogenase 4, small subunit)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- G7305 (hyfH) (b2488)
   Products of gene:
     - MONOMER0-144 (hydrogenase 4, component H)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- G7304 (hyfG) (b2487)
   Products of gene:
     - MONOMER0-150 (hydrogenase 4, large subunit)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- G7303 (hyfF) (b2486)
   Products of gene:
     - MONOMER0-143 (hydrogenase 4, component F)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- G7301 (hyfD) (b2484)
   Products of gene:
     - MONOMER0-141 (hydrogenase 4, component D)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- G7300 (hyfC) (b2483)
   Products of gene:
     - MONOMER0-154 (hydrogenase 4, component C)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- EG11282 (hyfB) (b2482)
   Products of gene:
     - MONOMER0-153 (hydrogenase 4, component B)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- EG10480 (hycG) (b2719)
   Products of gene:
     - HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)

- EG10479 (hycF) (b2720)
   Products of gene:
     - HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)

- EG10478 (hycE) (b2721)
   Products of gene:
     - HYCELARGE-MONOMER (hydrogenase 3, large subunit)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)

- EG10477 (hycD) (b2722)
   Products of gene:
     - HYCD-MONOMER (hydrogenase 3, membrane subunit)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)

- EG10476 (hycC) (b2723)
   Products of gene:
     - HYCC-MONOMER (hydrogenase 3, membrane subunit)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)



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ORGANISMS CONTAINING AT LEAST 10 GENES FROM THE GROUP:

Total number of orgs: 107
Effective number of orgs (counting one per cluster within 468 clusters): 76

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808112
XAUT78245 ncbi Xanthobacter autotrophicus Py211
WSUC273121 ncbi Wolinella succinogenes DSM 174012
UMET351160 ncbi uncultured methanogenic archaeon RC-I10
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB412
TPEN368408 ncbi Thermofilum pendens Hrk 512
TKOD69014 ncbi Thermococcus kodakarensis KOD111
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT211
STRO369723 ncbi Salinispora tropica CNB-44010
SSP387093 ncbi Sulfurovum sp. NBC37-112
SSON300269 ncbi Shigella sonnei Ss04612
SPRO399741 ncbi Serratia proteamaculans 56812
SMEL266834 ncbi Sinorhizobium meliloti 102111
SMED366394 ncbi Sinorhizobium medicae WSM41912
SMAR399550 ncbi Staphylothermus marinus F110
SHIGELLA ncbi Shigella flexneri 2a str. 2457T12
SFLE373384 ncbi Shigella flexneri 5 str. 840112
SFLE198214 ncbi Shigella flexneri 2a str. 30112
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47611
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6711
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915011
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1811
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty211
SDYS300267 ncbi Shigella dysenteriae Sd19712
SBOY300268 ncbi Shigella boydii Sb22712
SARE391037 ncbi Salinispora arenicola CNS-20510
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 1702910
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.110
RRUB269796 ncbi Rhodospirillum rubrum ATCC 1117012
RPAL316058 ncbi Rhodopseudomonas palustris HaA212
RPAL316057 ncbi Rhodopseudomonas palustris BisB512
RPAL316056 ncbi Rhodopseudomonas palustris BisB1812
RPAL316055 ncbi Rhodopseudomonas palustris BisA5312
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 384112
RFER338969 ncbi Rhodoferax ferrireducens T11810
REUT381666 ncbi Ralstonia eutropha H1611
PSP296591 ncbi Polaromonas sp. JS66610
PHOR70601 ncbi Pyrococcus horikoshii OT310
PFUR186497 ncbi Pyrococcus furiosus DSM 363810
PARC259536 ncbi Psychrobacter arcticus 273-410
PABY272844 ncbi Pyrococcus abyssi GE512
NSP387092 ncbi Nitratiruptor sp. SB155-211
NSP35761 Nocardioides sp.12
NOCE323261 ncbi Nitrosococcus oceani ATCC 1970712
NMUL323848 ncbi Nitrosospira multiformis ATCC 2519611
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra12
MTUB336982 ncbi Mycobacterium tuberculosis F1112
MTHE264732 ncbi Moorella thermoacetica ATCC 3907312
MTBRV ncbi Mycobacterium tuberculosis H37Rv12
MTBCDC ncbi Mycobacterium tuberculosis CDC155112
MMAZ192952 ncbi Methanosarcina mazei Go111
MMAG342108 ncbi Magnetospirillum magneticum AMB-110
MLAB410358 ncbi Methanocorpusculum labreanum Z11
MHUN323259 ncbi Methanospirillum hungatei JF-111
MCAP243233 ncbi Methylococcus capsulatus Bath12
MBUR259564 ncbi Methanococcoides burtonii DSM 624210
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P212
MBOV233413 ncbi Mycobacterium bovis AF2122/9712
MAVI243243 ncbi Mycobacterium avium 10412
MACE188937 ncbi Methanosarcina acetivorans C2A11
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857811
GURA351605 ncbi Geobacter uraniireducens Rf412
GSUL243231 ncbi Geobacter sulfurreducens PCA11
GMET269799 ncbi Geobacter metallireducens GS-1512
ESP42895 Enterobacter sp.11
EFER585054 ncbi Escherichia fergusonii ATCC 3546912
ECOO157 ncbi Escherichia coli O157:H7 EDL93312
ECOL83334 Escherichia coli O157:H712
ECOL585397 ncbi Escherichia coli ED1a11
ECOL585057 ncbi Escherichia coli IAI3912
ECOL585056 ncbi Escherichia coli UMN02612
ECOL585055 ncbi Escherichia coli 5598912
ECOL585035 ncbi Escherichia coli S8811
ECOL585034 ncbi Escherichia coli IAI112
ECOL481805 ncbi Escherichia coli ATCC 873912
ECOL469008 ncbi Escherichia coli BL21(DE3)12
ECOL439855 ncbi Escherichia coli SMS-3-512
ECOL413997 ncbi Escherichia coli B str. REL60612
ECOL409438 ncbi Escherichia coli SE1112
ECOL405955 ncbi Escherichia coli APEC O111
ECOL364106 ncbi Escherichia coli UTI8911
ECOL362663 ncbi Escherichia coli 53611
ECOL331111 ncbi Escherichia coli E24377A11
ECOL316407 ncbi Escherichia coli K-12 substr. W311012
ECOL199310 ncbi Escherichia coli CFT07311
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104312
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough10
DSP255470 ncbi Dehalococcoides sp. CBDB111
DSP216389 ncbi Dehalococcoides sp. BAV111
DPSY177439 ncbi Desulfotalea psychrophila LSv5411
DHAF138119 ncbi Desulfitobacterium hafniense Y5112
DETH243164 ncbi Dehalococcoides ethenogenes 19511
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-290111
CFET360106 ncbi Campylobacter fetus fetus 82-4011
CCUR360105 ncbi Campylobacter curvus 525.9212
CCON360104 ncbi Campylobacter concisus 1382612
CBEI290402 ncbi Clostridium beijerinckii NCIMB 805210
BJAP224911 ncbi Bradyrhizobium japonicum USDA 11011
ASP76114 ncbi Aromatoleum aromaticum EbN110
ASP62977 ncbi Acinetobacter sp. ADP111
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44912
AHYD196024 Aeromonas hydrophila dhakensis12
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 2327011
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C12
ACRY349163 ncbi Acidiphilium cryptum JF-512
ACEL351607 ncbi Acidothermus cellulolyticus 11B11
ACAU438753 ncbi Azorhizobium caulinodans ORS 57112


Names of the homologs of the genes in the group in each of these orgs
  G7306   G7305   G7304   G7303   G7301   G7300   EG11282   EG10480   EG10479   EG10478   EG10477   EG10476   
YENT393305 YE2806YE2805YE2804YE2803YE2801YE2800YE2799YE2806YE2805YE2804YE2800YE2799
XAUT78245 XAUT_0171XAUT_4625XAUT_0170XAUT_0169XAUT_0167XAUT_0166XAUT_0171XAUT_4625XAUT_0170XAUT_0167XAUT_0166
WSUC273121 WS1836WS1837WS1838WS1839WS0485WS1841WS1842WS1836WS1837WS1838WS1841WS1842
UMET351160 RCIX2382RCIX2383RCIX2384RCIX2386RCIX2387RCIX2382RCIX2382RCIX2383RCIX2386RCIX2387
TTEN273068 TTE1698TTE1699TTE1700TTE1702TTE1701TTE1705TTE1706TTE1698TTE1699TTE1700TTE1705TTE1706
TPEN368408 TPEN_0181TPEN_0182TPEN_0183TPEN_0185TPEN_0180TPEN_0187TPEN_0188TPEN_0181TPEN_0182TPEN_0183TPEN_0187TPEN_0188
TKOD69014 TK2089TK2091TK1220TK2087TK2092TK2087TK2089TK2078TK2091TK2092TK2087
STYP99287 STM2847STM2848STM2849STM2318STM2850STM2851STM2847STM2848STM2849STM2850STM2851
STRO369723 STROP_0390STROP_4057STROP_4286STROP_4054STROP_0403STROP_0772STROP_0390STROP_4057STROP_4286STROP_4054
SSP387093 SUN_0264SUN_2223SUN_0263SUN_0259SUN_0851SUN_0260SUN_0259SUN_0845SUN_2223SUN_0846SUN_0260SUN_0259
SSON300269 SSO_2570SSO_2569SSO_2868SSO_2567SSO_2565SSO_2564SSO_2563SSO_2866SSO_2867SSO_2868SSO_2869SSO_2870
SPRO399741 SPRO_2428SPRO_2429SPRO_2430SPRO_2432SPRO_3298SPRO_2431SPRO_2432SPRO_2428SPRO_2429SPRO_2430SPRO_2431SPRO_2432
SMEL266834 SMC01913SMC01922SMA1529SMC03179SMC03179SMA1516SMA1541SMC01913SMC01922SMA1529SMA1536
SMED366394 SMED_0889SMED_0898SMED_3620SMED_2806SMED_2806SMED_3614SMED_2806SMED_0889SMED_0898SMED_3620SMED_3614SMED_3625
SMAR399550 SMAR_0018SMAR_1062SMAR_1061SMAR_0645SMAR_1060SMAR_0018SMAR_1062SMAR_1061SMAR_1060SMAR_0028
SHIGELLA HYFIHYFHHYCEHYFFHYFDHYFCHYCCHYFIHYFHHYCEHYCDHYCC
SFLE373384 SFV_2534SFV_2533SFV_2782SFV_2531SFV_2529SFV_2528SFV_2780SFV_2784SFV_2783SFV_2782SFV_2781SFV_2780
SFLE198214 AAN44035.1AAN44034.1AAN44229.1AAN44031.1AAN44029.1AAN44028.1AAN44231.1AAN44035.1AAN44034.1AAN44229.1AAN44230.1AAN44231.1
SENT454169 SEHA_C3034SEHA_C3035SEHA_C3036SEHA_C2557SEHA_C3037SEHA_C3038SEHA_C3034SEHA_C3035SEHA_C3036SEHA_C3037SEHA_C3038
SENT321314 SCH_2780SCH_2781SCH_2782SCH_2318SCH_2783SCH_2784SCH_2780SCH_2781SCH_2782SCH_2783SCH_2784
SENT295319 SPA2705SPA2706SPA2707SPA0546SPA2708SPA2709SPA2705SPA2706SPA2707SPA2708SPA2709
SENT220341 STY2969STY2970STY2971STY2548STY2972STY2973STY2969STY2970STY2971STY2972STY2973
SENT209261 T2749T2750T2751T0546T2752T2753T2749T2750T2751T2752T2753
SDYS300267 SDY_2678SDY_2917SDY_2918SDY_2675SDY_2474SDY_2672SDY_2671SDY_2678SDY_2917SDY_2918SDY_2919SDY_2671
SBOY300268 SBO_2510SBO_2509SBO_2797SBO_2507SBO_2311SBO_2504SBO_2795SBO_2799SBO_2798SBO_2797SBO_2796SBO_2795
SARE391037 SARE_0461SARE_4455SARE_4460SARE_4452SARE_4452SARE_0714SARE_0461SARE_4455SARE_4721SARE_4452
RSPH349101 RSPH17029_1737RSPH17029_1743RSPH17029_1738RSPH17029_3449RSPH17029_3449RSPH17029_1175RSPH17029_1743RSPH17029_1738RSPH17029_1742RSPH17029_3449
RSPH272943 RSP_0101RSP_0107RSP_0102RSP_3715RSP_3715RSP_2513RSP_0107RSP_0102RSP_0106RSP_3715
RRUB269796 RRU_A0321RRU_A0318RRU_A0316RRU_A0320RRU_A0314RRU_A0317RRU_A0315RRU_A0321RRU_A0318RRU_A0316RRU_A0317RRU_A0315
RPAL316058 RPB_1265RPB_2582RPB_1264RPB_1263RPB_0148RPB_1261RPB_1260RPB_1265RPB_1354RPB_1264RPB_1261RPB_1260
RPAL316057 RPD_3850RPD_2877RPD_3851RPD_3852RPD_0676RPD_3854RPD_3855RPD_3850RPD_2877RPD_3851RPD_3854RPD_3855
RPAL316056 RPC_4568RPC_4569RPC_4570RPC_4571RPC_4573RPC_4574RPC_4575RPC_4568RPC_4569RPC_4570RPC_4574RPC_4575
RPAL316055 RPE_0957RPE_2531RPE_0956RPE_0955RPE_1720RPE_0953RPE_0952RPE_0957RPE_1717RPE_1712RPE_0953RPE_0952
RLEG216596 PRL110292RL1709PRL110293PRL110294RL1372PRL110296PRL110297PRL110292RL1709PRL110293PRL110296PRL110297
RFER338969 RFER_3287RFER_3288RFER_3289RFER_3291RFER_3292RFER_3287RFER_3090RFER_3288RFER_3291RFER_3292
REUT381666 H16_A2201H16_A2200H16_A2199H16_A1881H16_A2197H16_A2196H16_A2201H16_A1058H16_A2200H16_A2197H16_A2196
PSP296591 BPRO_0921BPRO_3248BPRO_0920BPRO_0919BPRO_0917BPRO_0916BPRO_0921BPRO_0920BPRO_0917BPRO_0916
PHOR70601 PH1434PH1437PH1452PH1439PH1431PH1434PH1440PH1437PH1439PH1431
PFUR186497 PF1432PF1434PF1430PF1435PF1430PF1432PF1436PF1434PF1435PF1430
PARC259536 PSYC_0585PSYC_0591PSYC_0586PSYC_0594PSYC_0594PSYC_0594PSYC_0585PSYC_0591PSYC_0586PSYC_0590
PABY272844 PAB1890PAB1395PAB1394PAB1888PAB1391PAB1393PAB1392PAB1396PAB1395PAB1394PAB1393PAB1392
NSP387092 NIS_0714NIS_0715NIS_0716NIS_0300NIS_0718NIS_0719NIS_0714NIS_0297NIS_0715NIS_0718NIS_0719
NSP35761 NOCA_4470NOCA_0528NOCA_4465NOCA_4466NOCA_0531NOCA_4468NOCA_4469NOCA_4470NOCA_0528NOCA_4465NOCA_4468NOCA_4469
NOCE323261 NOC_2564NOC_1120NOC_1125NOC_1281NOC_0478NOC_1121NOC_1280NOC_2564NOC_1120NOC_1125NOC_1121NOC_2554
NMUL323848 NMUL_A1092NMUL_A1020NMUL_A1015NMUL_A1591NMUL_A1591NMUL_A1023NMUL_A1092NMUL_A1020NMUL_A1015NMUL_A1019NMUL_A1023
MTUB419947 MRA_0086MRA_3186MRA_0091MRA_0090MRA_3189MRA_0088MRA_0087MRA_0086MRA_3186MRA_0091MRA_0088MRA_0087
MTUB336982 TBFG_10083TBFG_13174TBFG_10088TBFG_10087TBFG_13177TBFG_10085TBFG_10084TBFG_10083TBFG_13174TBFG_10088TBFG_10085TBFG_10084
MTHE264732 MOTH_2184MOTH_2185MOTH_2186MOTH_2188MOTH_2187MOTH_2190MOTH_2191MOTH_2184MOTH_2185MOTH_2186MOTH_2190MOTH_2191
MTBRV RV0082RV3153RV0087RV0086RV3156RV0084RV0083RV0082RV3153RV0087RV0084RV0083
MTBCDC MT0089MT3241MT3236MT0093MT3244MT0091MT0090MT0089MT3241MT3236MT0091MT0090
MMAZ192952 MM2322MM2324MM1062MM2482MM1060MM1059MM2322MM2486MM1063MM1060MM1059
MMAG342108 AMB0206AMB2779AMB0207AMB0208AMB0210AMB0211AMB0206AMB0207AMB0210AMB0211
MLAB410358 MLAB_1622MLAB_1619MLAB_0959MLAB_0955MLAB_0960MLAB_0955MLAB_0957MLAB_1619MLAB_0959MLAB_0960MLAB_0955
MHUN323259 MHUN_2588MHUN_2590MHUN_1819MHUN_1741MHUN_1821MHUN_1822MHUN_2588MHUN_1746MHUN_1745MHUN_1821MHUN_1822
MCAP243233 MCA_1137MCA_1352MCA_1138MCA_1139MCA_1349MCA_1141MCA_1142MCA_1137MCA_1352MCA_1138MCA_1141MCA_1142
MBUR259564 MBUR_1296MBUR_1294MBUR_0135MBUR_1289MBUR_1293MBUR_0135MBUR_1292MBUR_1294MBUR_1293MBUR_0135
MBOV410289 BCG_0115BCG_3176BCG_0120BCG_0119BCG_3179BCG_0117BCG_0116BCG_0115BCG_3176BCG_0120BCG_0117BCG_0116
MBOV233413 MB0085MB3177MB0090MB0089MB3180MB0087MB0086MB0085MB3177MB0090MB0087MB0086
MAVI243243 MAV_5114MAV_4041MAV_5109MAV_5110MAV_4044MAV_5112MAV_5113MAV_5114MAV_4041MAV_5109MAV_5112MAV_5113
MACE188937 MA4373MA4372MA4371MA4572MA4369MA4368MA4373MA1500MA4372MA4369MA4368
KPNE272620 GKPORF_B2389GKPORF_B2390GKPORF_B2391GKPORF_B1972GKPORF_B2392GKPORF_B2393GKPORF_B2389GKPORF_B2390GKPORF_B2391GKPORF_B2392GKPORF_B2393
GURA351605 GURA_2651GURA_4236GURA_0803GURA_0889GURA_0320GURA_0891GURA_0892GURA_2651GURA_0886GURA_0803GURA_0891GURA_4066
GSUL243231 GSU_0745GSU_3444GSU_0742GSU_2344GSU_0740GSU_0734GSU_0745GSU_0346GSU_3444GSU_0740GSU_0734
GMET269799 GMET_0369GMET_0369GMET_0153GMET_0372GMET_0168GMET_0374GMET_2601GMET_0369GMET_0369GMET_0153GMET_2600GMET_0375
ESP42895 ENT638_3192ENT638_3193ENT638_3194ENT638_2822ENT638_3195ENT638_3196ENT638_3192ENT638_3193ENT638_3194ENT638_3195ENT638_3196
EFER585054 EFER_0686EFER_0687EFER_0688EFER_0689EFER_0691EFER_0692EFER_0693EFER_0358EFER_0357EFER_0688EFER_0355EFER_0354
ECOO157 HYFIHYFHHYCEHYFFHYFDHYFCHYFBHYCGHYCFHYCEHYCDHYCC
ECOL83334 ECS3351ECS3350ECS3577ECS3348ECS3346ECS3345ECS3344ECS3575ECS3576ECS3577ECS3578ECS3579
ECOL585397 ECED1_3170ECED1_3171ECED1_3172ECED1_2742ECED1_3173ECED1_3174ECED1_3170ECED1_3171ECED1_3172ECED1_3173ECED1_3174
ECOL585057 ECIAI39_2628ECIAI39_2627ECIAI39_2909ECIAI39_2625ECIAI39_2623ECIAI39_2622ECIAI39_2621ECIAI39_2907ECIAI39_2908ECIAI39_2909ECIAI39_2910ECIAI39_2911
ECOL585056 ECUMN_2802ECUMN_2801ECUMN_3043ECUMN_2799ECUMN_2797ECUMN_2796ECUMN_2795ECUMN_3041ECUMN_3042ECUMN_3043ECUMN_3044ECUMN_3045
ECOL585055 EC55989_2774EC55989_2773EC55989_2987EC55989_2771EC55989_2522EC55989_2988EC55989_2765EC55989_2985EC55989_2986EC55989_2987EC55989_2988EC55989_2989
ECOL585035 ECS88_2984ECS88_2985ECS88_2986ECS88_2425ECS88_2987ECS88_2988ECS88_2984ECS88_2985ECS88_2986ECS88_2987ECS88_2988
ECOL585034 ECIAI1_2540ECIAI1_2539ECIAI1_2815ECIAI1_2537ECIAI1_2535ECIAI1_2534ECIAI1_2533ECIAI1_2813ECIAI1_2814ECIAI1_2815ECIAI1_2816ECIAI1_2817
ECOL481805 ECOLC_1187ECOLC_1188ECOLC_1189ECOLC_1190ECOLC_1192ECOLC_0990ECOLC_1194ECOLC_0993ECOLC_0992ECOLC_1189ECOLC_0990ECOLC_0989
ECOL469008 ECBD_1199ECBD_1200ECBD_1201ECBD_1202ECBD_1204ECBD_1003ECBD_1207ECBD_1006ECBD_1005ECBD_1201ECBD_1003ECBD_1002
ECOL439855 ECSMS35_2636ECSMS35_2635ECSMS35_2846ECSMS35_2633ECSMS35_2631ECSMS35_2630ECSMS35_2629ECSMS35_2844ECSMS35_2845ECSMS35_2846ECSMS35_2847ECSMS35_2848
ECOL413997 ECB_02381ECB_02380ECB_02571ECB_02378ECB_02376ECB_02572ECB_02374ECB_02569ECB_02570ECB_02571ECB_02572ECB_02573
ECOL409438 ECSE_2774ECSE_2773ECSE_2969ECSE_2771ECSE_2769ECSE_2767ECSE_2766ECSE_2967ECSE_2968ECSE_2969ECSE_2970ECSE_2971
ECOL405955 APECO1_3806APECO1_3805APECO1_3804APECO1_4287APECO1_3803APECO1_3802APECO1_3806APECO1_3805APECO1_3804APECO1_3803APECO1_3802
ECOL364106 UTI89_C3082UTI89_C3083UTI89_C3084UTI89_C2558UTI89_C3085UTI89_C3086UTI89_C3082UTI89_C3083UTI89_C3084UTI89_C3085UTI89_C3086
ECOL362663 ECP_2682ECP_2683ECP_2684ECP_2317ECP_2685ECP_2686ECP_2682ECP_2683ECP_2684ECP_2685ECP_2686
ECOL331111 ECE24377A_2771ECE24377A_2770ECE24377A_3009ECE24377A_2571ECE24377A_2765ECE24377A_3011ECE24377A_3007ECE24377A_3008ECE24377A_3009ECE24377A_3010ECE24377A_3011
ECOL316407 ECK2485:JW5805:B2489ECK2484:JW2473:B2488ECK2716:JW2691:B2721ECK2482:JW2471:B2486ECK2480:JW2469:B2484ECK2479:JW2468:B2483ECK2478:JW2467:B2482ECK2714:JW2689:B2719ECK2715:JW2690:B2720ECK2716:JW2691:B2721ECK2717:JW2692:B2722ECK2718:JW2693:B2723
ECOL199310 C3279C3280C3281C2819C3282C3283C3279C3280C3281C3282C3283
ECAR218491 ECA1239ECA1240ECA1241ECA1242ECA1244ECA1245ECA1246ECA1239ECA1240ECA1241ECA1245ECA1246
DVUL882 DVU_0432DVU_0430DVU_2286DVU_2287DVU_2286DVU_0432DVU_2289DVU_2291DVU_2287DVU_2286
DSP255470 CBDBA844CBDBA1653CBDBA1655CBDBA883CBDBA1658CBDBA1659CBDBA844CBDBA880CBDBA850CBDBA1658CBDBA1659
DSP216389 DEHABAV1_0780DEHABAV1_1317DEHABAV1_1318DEHABAV1_0815DEHABAV1_1320DEHABAV1_1321DEHABAV1_0780DEHABAV1_0812DEHABAV1_0785DEHABAV1_1320DEHABAV1_1321
DPSY177439 DP1042DP1042DP1043DP1044DP1046DP1047DP1042DP1042DP1318DP1046DP1047
DHAF138119 DSY3114DSY2583DSY3115DSY3116DSY4176DSY3118DSY3119DSY3114DSY2583DSY3115DSY3118DSY3119
DETH243164 DET_0862DET_1571DET_1572DET_0931DET_1574DET_1575DET_0862DET_0928DET_0867DET_1574DET_1575
CHYD246194 CHY_1830CHY_1827CHY_1832CHY_1417CHY_1831CHY_1832CHY_1830CHY_1829CHY_1827CHY_1831CHY_1832
CFET360106 CFF8240_0125CFF8240_0126CFF8240_0127CFF8240_0128CFF8240_0131CFF8240_0132CFF8240_0125CFF8240_0126CFF8240_0127CFF8240_0131CFF8240_0132
CCUR360105 CCV52592_1637CCV52592_1636CCV52592_1635CCV52592_1038CCV52592_1518CCV52592_1790CCV52592_1791CCV52592_1637CCV52592_1636CCV52592_1635CCV52592_1790CCV52592_1791
CCON360104 CCC13826_0713CCC13826_0712CCC13826_0711CCC13826_1911CCC13826_1667CCC13826_1913CCC13826_1914CCC13826_0713CCC13826_0712CCC13826_0711CCC13826_1913CCC13826_1914
CBEI290402 CBEI_2995CBEI_2991CBEI_2993CBEI_2988CBEI_2988CBEI_2992CBEI_2991CBEI_2993CBEI_2992CBEI_2988
BJAP224911 BLR6344BLL4909BLR6343BLR6342BLR6340BLR6339BLR6344BLL4909BLR6343BLR6340BLR6339
ASP76114 EBA4186EBA4187EBA4190EBA558EBA4192EBA4193EBA4186EBA4187EBA4192EBA4193
ASP62977 ACIAD0731ACIAD0738ACIAD0733ACIAD0376ACIAD0376ACIAD0737ACIAD0731ACIAD0738ACIAD0733ACIAD0737ACIAD0741
ASAL382245 ASA_1810ASA_1811ASA_1812ASA_1814ASA_1726ASA_1813ASA_1814ASA_1810ASA_1811ASA_1812ASA_1813ASA_1814
AHYD196024 AHA_2504AHA_2503AHA_2502AHA_2500AHA_1772AHA_2501AHA_2500AHA_2504AHA_2503AHA_2502AHA_2501AHA_2500
AFER243159 AFE_0943AFE_0944AFE_0945AFE_0485AFE_0947AFE_0948AFE_0943AFE_0482AFE_0944AFE_0947AFE_0948
ADEH290397 ADEH_3660ADEH_3660ADEH_3659ADEH_3658ADEH_0413ADEH_3656ADEH_3655ADEH_3660ADEH_3660ADEH_3659ADEH_3656ADEH_3655
ACRY349163 ACRY_1401ACRY_0929ACRY_1400ACRY_1399ACRY_0932ACRY_1397ACRY_1396ACRY_1401ACRY_1113ACRY_1400ACRY_1397ACRY_1396
ACEL351607 ACEL_0727ACEL_0275ACEL_0270ACEL_0729ACEL_0278ACEL_0726ACEL_0727ACEL_0275ACEL_0270ACEL_0731ACEL_0726
ACAU438753 AZC_4355AZC_1676AZC_4356AZC_4357AZC_4360AZC_4359AZC_4360AZC_4355AZC_1676AZC_4356AZC_4359AZC_4360


Organism features enriched in list (features available for 103 out of the 107 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0047217892
Arrangment:Pairs 0.000571832112
Disease:Dysentery 0.000026966
Disease:Gastroenteritis 0.0025856713
Disease:Tuberculosis 0.005382633
GC_Content_Range4:0-40 3.144e-156213
GC_Content_Range4:40-60 1.421e-865224
GC_Content_Range7:0-30 0.0007864147
GC_Content_Range7:30-40 5.039e-115166
GC_Content_Range7:50-60 7.435e-1144107
Genome_Size_Range5:0-2 0.000036112155
Genome_Size_Range5:2-4 0.000483321197
Genome_Size_Range5:4-6 2.044e-1365184
Genome_Size_Range9:1-2 0.001671412128
Genome_Size_Range9:2-3 0.001932611120
Genome_Size_Range9:4-5 2.156e-63496
Genome_Size_Range9:5-6 8.091e-63188
Gram_Stain:Gram_Neg 0.001266772333
Gram_Stain:Gram_Pos 0.001325115150
Motility:Yes 7.770e-667267
Optimal_temp.:- 0.006485535257
Optimal_temp.:25-30 0.0076675819
Oxygen_Req:Aerobic 0.000437019185
Oxygen_Req:Facultative 0.000449550201
Shape:Coccus 0.0002199482
Shape:Irregular_coccus 0.0035626817
Shape:Rod 0.002969173347



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ORGANISMS CONTAINING AT MOST 2 GENES FROM THE GROUP:

Total number of orgs: 169
Effective number of orgs (counting one per cluster within 468 clusters): 128

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
VVUL216895 ncbi Vibrio vulnificus CMCP60
VVUL196600 ncbi Vibrio vulnificus YJ0160
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106330
VFIS312309 ncbi Vibrio fischeri ES1140
VCHO345073 ncbi Vibrio cholerae O3951
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169612
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TTUR377629 ncbi Teredinibacter turnerae T79010
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332232
TPET390874 ncbi Thermotoga petrophila RKU-10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO0
TDEN243275 ncbi Treponema denticola ATCC 354050
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003451
SMUT210007 ncbi Streptococcus mutans UA1590
SLOI323850 ncbi Shewanella loihica PV-40
SHAL458817 ncbi Shewanella halifaxensis HAW-EB41
SGOR29390 Streptococcus gordonii Challis0
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332092
RALB246199 Ruminococcus albus 80
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP117 Pirellula sp.1
PPRO298386 ncbi Photobacterium profundum SS90
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PGIN242619 ncbi Porphyromonas gingivalis W830
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PAER178306 ncbi Pyrobaculum aerophilum IM21
PACN267747 ncbi Propionibacterium acnes KPA1712021
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM182
NMEN122587 ncbi Neisseria meningitidis Z24912
NMEN122586 ncbi Neisseria meningitidis MC582
NGON242231 ncbi Neisseria gonorrhoeae FA 10902
MXAN246197 ncbi Myxococcus xanthus DK 16222
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSP400668 ncbi Marinomonas sp. MWYL12
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MLEP272631 ncbi Mycobacterium leprae TN0
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MART243272 ncbi Mycoplasma arthritidis 158L3-10
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302162
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GFOR411154 ncbi Gramella forsetii KT08031
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293280
EFAE226185 ncbi Enterococcus faecalis V5830
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3822
CMIC31964 ncbi Clavibacter michiganensis sepedonicus2
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6300
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.2
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7306   G7305   G7304   G7303   G7301   G7300   EG11282   EG10480   EG10479   EG10478   EG10477   EG10476   
ZMOB264203
VVUL216895
VVUL196600
VPAR223926
VFIS312309
VCHO345073 VC0395_1123
VCHO VCA0155VCA0155
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TTUR377629
TPSE340099 TETH39_0438TETH39_0438
TPET390874
TPAL243276
TLET416591
TDEN243275
SWOL335541 SWOL_1700
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP94122
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579 SPEA_3284
SMUT210007
SLOI323850
SHAL458817 SHAL_3361
SGOR29390
SDEN318161
SDEG203122
SBAL402882
SBAL399599
SAGA211110
SAGA208435
SAGA205921
SACI56780
RSAL288705 RSAL33209_2208RSAL33209_2210
RALB246199
PTHE370438
PSP117 RB1431
PPRO298386
PPEN278197
PMUL272843
PGIN242619
PDIS435591
PATL342610
PAST100379
PAER178306 PAE2928
PACN267747 PPA1928
NMEN374833
NMEN272831 NMC0238NMC0238
NMEN122587 NMA0018NMA0018
NMEN122586 NMB_0242NMB_0242
NGON242231 NGO1750NGO1750
MXAN246197 MXAN_1082MXAN_1082
MSYN262723
MSUC221988
MSP400668 MMWYL1_3982MMWYL1_3982
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MLEP272631
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MART243272
LXYL281090
LSAK314315
LREU557436
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LACI272621
KRAD266940 KRAD_0046KRAD_0046
HSOM228400
HSOM205914
HINF71421
HINF374930
HINF281310
HDUC233412
GOXY290633
GFOR411154 GFO_3553
FNUC190304
FMAG334413
EFAE226185
DOLE96561
DNOD246195
DDES207559
CTRA471473
CTRA471472
CSUL444179
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102
CNOV386415
CMUR243161
CMIC443906 CMM_1087CMM_1089
CMIC31964 CMS1407CMS1407
CMAQ397948 CMAQ_0428
CKLU431943
CJEI306537 JK1986
CGLU196627 CG0326
CFEL264202
CEFF196164 CE1397
CDIP257309 DIP0293
CDIF272563
CCAV227941
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CACE272562
CABO218497
BTUR314724
BLON206672
BHER314723
BGAR290434
BBUR224326
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_4496ARTH_4497
APLE434271
APLE416269
AORE350688
ALAI441768
AFUL224325
AAUR290340 AAUR_3679


Organism features enriched in list (features available for 159 out of the 169 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.723e-105192
Arrangment:Pairs 0.008203440112
Disease:Botulism 0.001440655
Disease:Meningitis 0.001974367
Disease:Meningitis_and_septicemia 0.005381244
Disease:Pharyngitis 0.000026988
Disease:Pneumonia 0.0039160812
Disease:Wide_range_of_infections 4.793e-71111
Disease:bronchitis_and_pneumonitis 0.000026988
Disease:otitis_media 0.005381244
Disease:sinusitis 0.005381244
Endospores:No 0.000147876211
GC_Content_Range4:0-40 1.927e-887213
GC_Content_Range4:60-100 3.575e-1210145
GC_Content_Range7:0-30 6.528e-93147
GC_Content_Range7:30-40 0.007367656166
GC_Content_Range7:40-50 0.002050244117
GC_Content_Range7:50-60 0.002235218107
GC_Content_Range7:60-70 3.969e-137134
Genome_Size_Range5:0-2 2.148e-767155
Genome_Size_Range5:4-6 8.601e-727184
Genome_Size_Range5:6-10 0.0000285247
Genome_Size_Range9:0-1 2.496e-72027
Genome_Size_Range9:1-2 0.002488147128
Genome_Size_Range9:2-3 0.003492644120
Genome_Size_Range9:4-5 0.00068921496
Genome_Size_Range9:5-6 0.00135871388
Genome_Size_Range9:6-8 0.0000538138
Gram_Stain:Gram_Neg 0.000152372333
Gram_Stain:Gram_Pos 3.645e-1071150
Habitat:Host-associated 0.000011778206
Habitat:Specialized 0.0006730553
Motility:No 0.000087059151
Motility:Yes 7.495e-650267
Optimal_temp.:- 3.600e-744257
Optimal_temp.:20-30 0.001974367
Optimal_temp.:30-35 0.001974367
Optimal_temp.:35-37 0.0014958913
Optimal_temp.:37 1.935e-751106
Oxygen_Req:Aerobic 7.355e-825185
Oxygen_Req:Anaerobic 0.004790138102
Oxygen_Req:Facultative 8.536e-882201
Pathogenic_in:Human 0.000026279213
Pathogenic_in:No 0.000832446226
Pathogenic_in:Swine 0.001440655
Salinity:Non-halophilic 1.751e-649106
Shape:Coccus 3.901e-64082
Shape:Sphere 2.499e-61519
Temp._range:Mesophilic 0.0000976144473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 66
Effective number of orgs (counting one per cluster within 468 clusters): 59

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
TPEN368408 ncbi Thermofilum pendens Hrk 5 1.106e-1134512
PABY272844 ncbi Pyrococcus abyssi GE5 3.298e-1045612
MLAB410358 ncbi Methanocorpusculum labreanum Z 2.934e-936311
SMAR399550 ncbi Staphylothermus marinus F1 1.102e-827310
TKOD69014 ncbi Thermococcus kodakarensis KOD1 4.751e-846711
MHUN323259 ncbi Methanospirillum hungatei JF-1 7.207e-848511
CCON360104 ncbi Campylobacter concisus 13826 1.304e-774712
CCUR360105 ncbi Campylobacter curvus 525.92 1.607e-776012
PHOR70601 ncbi Pyrococcus horikoshii OT3 3.726e-738810
DETH243164 ncbi Dehalococcoides ethenogenes 195 4.596e-757411
DSP216389 ncbi Dehalococcoides sp. BAV1 5.661e-758511
DSP255470 ncbi Dehalococcoides sp. CBDB1 6.332e-759111
MTBCDC ncbi Mycobacterium tuberculosis CDC1551 6.858e-785712
MMAZ192952 ncbi Methanosarcina mazei Go1 7.473e-760011
MTBRV ncbi Mycobacterium tuberculosis H37Rv 7.781e-786612
MBOV233413 ncbi Mycobacterium bovis AF2122/97 7.890e-786712
MTUB336982 ncbi Mycobacterium tuberculosis F11 8.226e-787012
SSP387093 ncbi Sulfurovum sp. NBC37-1 8.226e-787012
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P2 8.226e-787012
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra 8.341e-787112
WSUC273121 ncbi Wolinella succinogenes DSM 1740 8.575e-787312
MACE188937 ncbi Methanosarcina acetivorans C2A 1.889e-665311
PFUR186497 ncbi Pyrococcus furiosus DSM 3638 2.068e-646110
MAVI243243 ncbi Mycobacterium avium 104 2.094e-694012
MBUR259564 ncbi Methanococcoides burtonii DSM 6242 2.158e-646310
MAEO419665 ncbi Methanococcus aeolicus Nankai-3 4.708e-63449
CFET360106 ncbi Campylobacter fetus fetus 82-40 5.582e-672111
UMET351160 ncbi uncultured methanogenic archaeon RC-I 0.000015456510
NSP387092 ncbi Nitratiruptor sp. SB155-2 0.000018380411
CMET456442 ncbi Candidatus Methanoregula boonei 6A8 0.00002294119
ACEL351607 ncbi Acidothermus cellulolyticus 11B 0.000042786911
NSP35761 Nocardioides sp. 0.0000569123612
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB4 0.0001075130312
MTHE264732 ncbi Moorella thermoacetica ATCC 39073 0.0001280132212
NOCE323261 ncbi Nitrosococcus oceani ATCC 19707 0.0002001137212
NSEN222891 ncbi Neorickettsia sennetsu Miyayama 0.00030742507
RTYP257363 ncbi Rickettsia typhi Wilmington 0.00034203888
RPRO272947 ncbi Rickettsia prowazekii Madrid E 0.00034893898
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C 0.0003676144312
RCAN293613 ncbi Rickettsia canadensis McKiel 0.00047734058
MCAP243233 ncbi Methylococcus capsulatus Bath 0.0006299150912
GMET269799 ncbi Geobacter metallireducens GS-15 0.0006503151312
RPAL316057 ncbi Rhodopseudomonas palustris BisB5 0.0007382152912
ACRY349163 ncbi Acidiphilium cryptum JF-5 0.0007558153212
GURA351605 ncbi Geobacter uraniireducens Rf4 0.0008499154712
MBAR269797 ncbi Methanosarcina barkeri Fusaro 0.00091596269
DHAF138119 ncbi Desulfitobacterium hafniense Y51 0.0010548157512
RPAL316058 ncbi Rhodopseudomonas palustris HaA2 0.0010711157712
RPAL316055 ncbi Rhodopseudomonas palustris BisA53 0.0011384158512
TVOL273116 ncbi Thermoplasma volcanium GSS1 0.00119653057
APHA212042 ncbi Anaplasma phagocytophilum HZ 0.00195983287
WPIP80849 Wolbachia endosymbiont of Brugia malayi 0.00217123337
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-2901 0.0021744125011
RPAL316056 ncbi Rhodopseudomonas palustris BisB18 0.0025717169612
DPSY177439 ncbi Desulfotalea psychrophila LSv54 0.0027123127611
RRUB269796 ncbi Rhodospirillum rubrum ATCC 11170 0.0028193170912
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF8 0.00328203547
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 23270 0.0032853129911
ACAU438753 ncbi Azorhizobium caulinodans ORS 571 0.0044791177612
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP1375 0.00483345478
WPIP955 Wolbachia pipientis 0.00557483837
STRO369723 ncbi Salinispora tropica CNB-440 0.0059453104210
NMUL323848 ncbi Nitrosospira multiformis ATCC 25196 0.0062311137911
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE25 0.00688525738
SARE391037 ncbi Salinispora arenicola CNS-205 0.0071314106210
CCHL340177 ncbi Chlorobium chlorochromatii CaD3 0.00718327959


Names of the homologs of the genes in the group in each of these orgs
  G7306   G7305   G7304   G7303   G7301   G7300   EG11282   EG10480   EG10479   EG10478   EG10477   EG10476   
TPEN368408 TPEN_0181TPEN_0182TPEN_0183TPEN_0185TPEN_0180TPEN_0187TPEN_0188TPEN_0181TPEN_0182TPEN_0183TPEN_0187TPEN_0188
PABY272844 PAB1890PAB1395PAB1394PAB1888PAB1391PAB1393PAB1392PAB1396PAB1395PAB1394PAB1393PAB1392
MLAB410358 MLAB_1622MLAB_1619MLAB_0959MLAB_0955MLAB_0960MLAB_0955MLAB_0957MLAB_1619MLAB_0959MLAB_0960MLAB_0955
SMAR399550 SMAR_0018SMAR_1062SMAR_1061SMAR_0645SMAR_1060SMAR_0018SMAR_1062SMAR_1061SMAR_1060SMAR_0028
TKOD69014 TK2089TK2091TK1220TK2087TK2092TK2087TK2089TK2078TK2091TK2092TK2087
MHUN323259 MHUN_2588MHUN_2590MHUN_1819MHUN_1741MHUN_1821MHUN_1822MHUN_2588MHUN_1746MHUN_1745MHUN_1821MHUN_1822
CCON360104 CCC13826_0713CCC13826_0712CCC13826_0711CCC13826_1911CCC13826_1667CCC13826_1913CCC13826_1914CCC13826_0713CCC13826_0712CCC13826_0711CCC13826_1913CCC13826_1914
CCUR360105 CCV52592_1637CCV52592_1636CCV52592_1635CCV52592_1038CCV52592_1518CCV52592_1790CCV52592_1791CCV52592_1637CCV52592_1636CCV52592_1635CCV52592_1790CCV52592_1791
PHOR70601 PH1434PH1437PH1452PH1439PH1431PH1434PH1440PH1437PH1439PH1431
DETH243164 DET_0862DET_1571DET_1572DET_0931DET_1574DET_1575DET_0862DET_0928DET_0867DET_1574DET_1575
DSP216389 DEHABAV1_0780DEHABAV1_1317DEHABAV1_1318DEHABAV1_0815DEHABAV1_1320DEHABAV1_1321DEHABAV1_0780DEHABAV1_0812DEHABAV1_0785DEHABAV1_1320DEHABAV1_1321
DSP255470 CBDBA844CBDBA1653CBDBA1655CBDBA883CBDBA1658CBDBA1659CBDBA844CBDBA880CBDBA850CBDBA1658CBDBA1659
MTBCDC MT0089MT3241MT3236MT0093MT3244MT0091MT0090MT0089MT3241MT3236MT0091MT0090
MMAZ192952 MM2322MM2324MM1062MM2482MM1060MM1059MM2322MM2486MM1063MM1060MM1059
MTBRV RV0082RV3153RV0087RV0086RV3156RV0084RV0083RV0082RV3153RV0087RV0084RV0083
MBOV233413 MB0085MB3177MB0090MB0089MB3180MB0087MB0086MB0085MB3177MB0090MB0087MB0086
MTUB336982 TBFG_10083TBFG_13174TBFG_10088TBFG_10087TBFG_13177TBFG_10085TBFG_10084TBFG_10083TBFG_13174TBFG_10088TBFG_10085TBFG_10084
SSP387093 SUN_0264SUN_2223SUN_0263SUN_0259SUN_0851SUN_0260SUN_0259SUN_0845SUN_2223SUN_0846SUN_0260SUN_0259
MBOV410289 BCG_0115BCG_3176BCG_0120BCG_0119BCG_3179BCG_0117BCG_0116BCG_0115BCG_3176BCG_0120BCG_0117BCG_0116
MTUB419947 MRA_0086MRA_3186MRA_0091MRA_0090MRA_3189MRA_0088MRA_0087MRA_0086MRA_3186MRA_0091MRA_0088MRA_0087
WSUC273121 WS1836WS1837WS1838WS1839WS0485WS1841WS1842WS1836WS1837WS1838WS1841WS1842
MACE188937 MA4373MA4372MA4371MA4572MA4369MA4368MA4373MA1500MA4372MA4369MA4368
PFUR186497 PF1432PF1434PF1430PF1435PF1430PF1432PF1436PF1434PF1435PF1430
MAVI243243 MAV_5114MAV_4041MAV_5109MAV_5110MAV_4044MAV_5112MAV_5113MAV_5114MAV_4041MAV_5109MAV_5112MAV_5113
MBUR259564 MBUR_1296MBUR_1294MBUR_0135MBUR_1289MBUR_1293MBUR_0135MBUR_1292MBUR_1294MBUR_1293MBUR_0135
MAEO419665 MAEO_0938MAEO_0306MAEO_0940MAEO_0942MAEO_0943MAEO_0938MAEO_0371MAEO_0942MAEO_0943
CFET360106 CFF8240_0125CFF8240_0126CFF8240_0127CFF8240_0128CFF8240_0131CFF8240_0132CFF8240_0125CFF8240_0126CFF8240_0127CFF8240_0131CFF8240_0132
UMET351160 RCIX2382RCIX2383RCIX2384RCIX2386RCIX2387RCIX2382RCIX2382RCIX2383RCIX2386RCIX2387
NSP387092 NIS_0714NIS_0715NIS_0716NIS_0300NIS_0718NIS_0719NIS_0714NIS_0297NIS_0715NIS_0718NIS_0719
CMET456442 MBOO_0026MBOO_1123MBOO_1124MBOO_1126MBOO_1127MBOO_0026MBOO_1123MBOO_1126MBOO_1127
ACEL351607 ACEL_0727ACEL_0275ACEL_0270ACEL_0729ACEL_0278ACEL_0726ACEL_0727ACEL_0275ACEL_0270ACEL_0731ACEL_0726
NSP35761 NOCA_4470NOCA_0528NOCA_4465NOCA_4466NOCA_0531NOCA_4468NOCA_4469NOCA_4470NOCA_0528NOCA_4465NOCA_4468NOCA_4469
TTEN273068 TTE1698TTE1699TTE1700TTE1702TTE1701TTE1705TTE1706TTE1698TTE1699TTE1700TTE1705TTE1706
MTHE264732 MOTH_2184MOTH_2185MOTH_2186MOTH_2188MOTH_2187MOTH_2190MOTH_2191MOTH_2184MOTH_2185MOTH_2186MOTH_2190MOTH_2191
NOCE323261 NOC_2564NOC_1120NOC_1125NOC_1281NOC_0478NOC_1121NOC_1280NOC_2564NOC_1120NOC_1125NOC_1121NOC_2554
NSEN222891 NSE_0431NSE_0820NSE_0566NSE_0431NSE_0820NSE_0566NSE_0054
RTYP257363 RT0345RT0782RT0343RT0780RT0345RT0782RT0343RT0783
RPRO272947 RP356RP795RP354RP793RP356RP795RP354RP796
ADEH290397 ADEH_3660ADEH_3660ADEH_3659ADEH_3658ADEH_0413ADEH_3656ADEH_3655ADEH_3660ADEH_3660ADEH_3659ADEH_3656ADEH_3655
RCAN293613 A1E_03675A1E_05070A1E_03690A1E_05080A1E_03675A1E_05070A1E_03690A1E_05080
MCAP243233 MCA_1137MCA_1352MCA_1138MCA_1139MCA_1349MCA_1141MCA_1142MCA_1137MCA_1352MCA_1138MCA_1141MCA_1142
GMET269799 GMET_0369GMET_0369GMET_0153GMET_0372GMET_0168GMET_0374GMET_2601GMET_0369GMET_0369GMET_0153GMET_2600GMET_0375
RPAL316057 RPD_3850RPD_2877RPD_3851RPD_3852RPD_0676RPD_3854RPD_3855RPD_3850RPD_2877RPD_3851RPD_3854RPD_3855
ACRY349163 ACRY_1401ACRY_0929ACRY_1400ACRY_1399ACRY_0932ACRY_1397ACRY_1396ACRY_1401ACRY_1113ACRY_1400ACRY_1397ACRY_1396
GURA351605 GURA_2651GURA_4236GURA_0803GURA_0889GURA_0320GURA_0891GURA_0892GURA_2651GURA_0886GURA_0803GURA_0891GURA_4066
MBAR269797 MBAR_A2455MBAR_A0148MBAR_A3403MBAR_A0151MBAR_A2455MBAR_A3407MBAR_A0148MBAR_A0151MBAR_A3402
DHAF138119 DSY3114DSY2583DSY3115DSY3116DSY4176DSY3118DSY3119DSY3114DSY2583DSY3115DSY3118DSY3119
RPAL316058 RPB_1265RPB_2582RPB_1264RPB_1263RPB_0148RPB_1261RPB_1260RPB_1265RPB_1354RPB_1264RPB_1261RPB_1260
RPAL316055 RPE_0957RPE_2531RPE_0956RPE_0955RPE_1720RPE_0953RPE_0952RPE_0957RPE_1717RPE_1712RPE_0953RPE_0952
TVOL273116 TVN1115TVN1455TVN1453TVN1111TVN1113TVN1453TVN1106
APHA212042 APH_0520APH_0732APH_0044APH_0520APH_0801APH_0732APH_0711
WPIP80849 WB_0377WB_0208WB_0024WB_0024WB_0377WB_0712WB_0208
CHYD246194 CHY_1830CHY_1827CHY_1832CHY_1417CHY_1831CHY_1832CHY_1830CHY_1829CHY_1827CHY_1831CHY_1832
RPAL316056 RPC_4568RPC_4569RPC_4570RPC_4571RPC_4573RPC_4574RPC_4575RPC_4568RPC_4569RPC_4570RPC_4574RPC_4575
DPSY177439 DP1042DP1042DP1043DP1044DP1046DP1047DP1042DP1042DP1318DP1046DP1047
RRUB269796 RRU_A0321RRU_A0318RRU_A0316RRU_A0320RRU_A0314RRU_A0317RRU_A0315RRU_A0321RRU_A0318RRU_A0316RRU_A0317RRU_A0315
CKOR374847 KCR_0139KCR_0144KCR_0145KCR_0144KCR_0141KCR_0139KCR_0140
AFER243159 AFE_0943AFE_0944AFE_0945AFE_0485AFE_0947AFE_0948AFE_0943AFE_0482AFE_0944AFE_0947AFE_0948
ACAU438753 AZC_4355AZC_1676AZC_4356AZC_4357AZC_4360AZC_4359AZC_4360AZC_4355AZC_1676AZC_4356AZC_4359AZC_4360
PMAR167539 PRO_0324PRO_0197PRO_0172PRO_0172PRO_0172PRO_0183PRO_0197PRO_0184
WPIP955 WD_1123WD_0560WD_1107WD_1107WD_1123WD_0980WD_0560
STRO369723 STROP_0390STROP_4057STROP_4286STROP_4054STROP_0403STROP_0772STROP_0390STROP_4057STROP_4286STROP_4054
NMUL323848 NMUL_A1092NMUL_A1020NMUL_A1015NMUL_A1591NMUL_A1591NMUL_A1023NMUL_A1092NMUL_A1020NMUL_A1015NMUL_A1019NMUL_A1023
CPRO264201 PC0567PC0562PC0570PC0570PC0567PC0562PC0566PC0570
SARE391037 SARE_0461SARE_4455SARE_4460SARE_4452SARE_4452SARE_0714SARE_0461SARE_4455SARE_4721SARE_4452
CCHL340177 CAG_0635CAG_0637CAG_0642CAG_0642CAG_0638CAG_0643CAG_0635CAG_0637CAG_0638


Organism features enriched in list (features available for 63 out of the 66 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.009186649
Disease:Tuberculosis 0.001208633
GC_Content_Range4:0-40 0.002007713213
GC_Content_Range7:30-40 0.006730010166
GC_Content_Range7:40-50 0.003640621117
Gram_Stain:Gram_Neg 0.005937227333
Oxygen_Req:Anaerobic 1.430e-626102
Oxygen_Req:Facultative 0.00010469201
Pathogenic_in:Human 0.002007713213
Pathogenic_in:No 0.000822036226
Salinity:Mesophilic 0.0069985513
Salinity:Non-halophilic 0.00339574106
Shape:Irregular_coccus 0.0000129917
Shape:Rod 0.002008827347
Temp._range:Hyperthermophilic 0.0013065823
Temp._range:Mesophilic 0.001684942473



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45340.4319
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31270.4242



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7305   G7304   G7303   G7301   G7300   EG11282   EG10480   EG10479   EG10478   EG10477   EG10476   
G73060.9995810.9997550.9996170.9989180.9995650.9995070.999980.9996950.9997520.9997630.999491
G73050.9996160.9992240.9994730.9991210.9989320.999510.9999270.9996310.99970.999006
G73040.9996120.9994370.999640.999560.999730.999750.9999740.9998260.999548
G73030.9997470.9996180.9998790.9995990.9994920.9995840.9997150.999839
G73010.9986220.9997030.9987370.9995840.9995050.9993090.999665
G73000.9996970.999510.9992740.9996190.9997950.999668
EG112820.999470.9992570.999530.9997540.999892
EG104800.9996650.9997290.9997350.999488
EG104790.9997910.9998750.999317
EG104780.9998330.999532
EG104770.999726
EG10476



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PAIRWISE BLAST SCORES:

  G7306   G7305   G7304   G7303   G7301   G7300   EG11282   EG10480   EG10479   EG10478   EG10477   EG10476   
G73060.0f0------1.2e-72----
G7305-0.0f0------1.1e-26---
G7304--0.0f0------0--
G7303---0.0f0--9.0e-32-----
G7301----0.0f0-------
G7300-----0.0f0----4.7e-60-
EG11282----3.5e-20-0.0f0----3.5e-70
EG104802.0e-77------0.0f0----
EG10479-3.6e-37------0.0f0---
EG10478--0------0.0f0--
EG10477-----8.1e-72----0.0f0-
EG10476---2.9e-13--1.5e-77----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- HYDROG3-CPLX (hydrogenase 3) (degree of match pw to cand: 0.833, degree of match cand to pw: 0.417, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
             0.9979 0.9930 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
   *in cand* 0.9996 0.9987 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
   *in cand* 0.9996 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
   *in cand* 0.9996 0.9990 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9998 0.9993 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9989 EG11282 (hyfB) MONOMER0-153 (hydrogenase 4, component B)
   *in cand* 0.9995 0.9986 G7300 (hyfC) MONOMER0-154 (hydrogenase 4, component C)
   *in cand* 0.9994 0.9986 G7301 (hyfD) MONOMER0-141 (hydrogenase 4, component D)
   *in cand* 0.9997 0.9992 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
   *in cand* 0.9997 0.9994 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)
   *in cand* 0.9995 0.9989 G7305 (hyfH) MONOMER0-144 (hydrogenase 4, component H)
   *in cand* 0.9996 0.9989 G7306 (hyfI) MONOMER0-151 (hydrogenase 4, small subunit)

- FERMENTATION-PWY (mixed acid fermentation) (degree of match pw to cand: 0.179, degree of match cand to pw: 0.417, average score: 0.597)
  Genes in pathway or complex:
             0.8720 0.6904 EG20173 (pta) PHOSACETYLTRANS-MONOMER (Pta)
             0.8782 0.5483 EG10027 (ackA) ACETATEKINA-MONOMER (propionate kinase / acetate kinase)
             0.3327 0.1507 G7627 (tdcE) KETOBUTFORMLY-MONOMER (2-ketobutyrate formate-lyase / pyruvate formate-lyase 4)
             0.3465 0.1785 EG10701 (pflB) PYRUVFORMLY-MONOMER (PflB)
             0.4417 0.1906 G6775 (adhP) ADHP-MONOMER (ethanol dehydrogenase)
             0.6218 0.4832 EG10031 (adhE) ADHE-MONOMER (AdhE)
             0.4079 0.0920 EG10803 (pykA) PKII-MONOMER (pyruvate kinase II monomer)
             0.4817 0.2365 EG10804 (pykF) PKI-MONOMER (pyruvate kinase I monomer)
             0.7731 0.5960 G592 (ldhA) DLACTDEHYDROGNAD-MONOMER (D-lactate dehydrogenase)
             0.6022 0.3326 EG10358 (fumC) FUMC-MONOMER (fumarase C monomer)
             0.7405 0.4926 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)
             0.7818 0.5893 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
             0.6374 0.0792 EG10576 (mdh) MALATE-DEHASE-MONOMER (Mdh)
             0.2344 0.0771 EG10756 (ppc) PEPCARBOX-MONOMER (Ppc)
   *in cand* 0.9998 0.9993 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9996 0.9990 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9996 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
   *in cand* 0.9996 0.9987 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.9979 0.9930 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
   *in cand* 0.9997 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
                NIL    NIL EG10285 (fdhF) FORMATEDEHYDROGH-MONOMER (formate dehydrogenase H)
             0.1608 0.0834 EG10333 (frdD) FUM-MEMB2 (fumarate reductase membrane protein)
             0.0899 0.0569 EG10332 (frdC) FUM-MEMB1 (fumarate reductase membrane protein)
             0.4954 0.1709 EG10331 (frdB) FUM-FE-S (fumarate reductase iron-sulfur protein)
             0.3744 0.1375 EG10330 (frdA) FUM-FLAVO (fumarate reductase flavoprotein)
             0.7159 0.0975 EG10402 (gltA) CITSYN-MONOMER (citrate synthase monomer)
             0.3087 0.0548 EG12316 (acnB) ACONITATEDEHYDRB-MONOMER (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase)
             0.5085 0.0780 EG10489 (icd) ISOCITDEH-SUBUNIT (Icd)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9989 EG11282 (hyfB) MONOMER0-153 (hydrogenase 4, component B)
   *in cand* 0.9995 0.9986 G7300 (hyfC) MONOMER0-154 (hydrogenase 4, component C)
   *in cand* 0.9994 0.9986 G7301 (hyfD) MONOMER0-141 (hydrogenase 4, component D)
   *in cand* 0.9997 0.9992 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
   *in cand* 0.9997 0.9994 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)
   *in cand* 0.9995 0.9989 G7305 (hyfH) MONOMER0-144 (hydrogenase 4, component H)
   *in cand* 0.9996 0.9989 G7306 (hyfI) MONOMER0-151 (hydrogenase 4, small subunit)

- FHLMULTI-CPLX (formate hydrogenlyase complex) (degree of match pw to cand: 0.714, degree of match cand to pw: 0.417, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9993 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9996 0.9990 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9996 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
   *in cand* 0.9996 0.9987 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.9979 0.9930 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
   *in cand* 0.9997 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
                NIL    NIL EG10285 (fdhF) FORMATEDEHYDROGH-MONOMER (formate dehydrogenase H)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9989 EG11282 (hyfB) MONOMER0-153 (hydrogenase 4, component B)
   *in cand* 0.9995 0.9986 G7300 (hyfC) MONOMER0-154 (hydrogenase 4, component C)
   *in cand* 0.9994 0.9986 G7301 (hyfD) MONOMER0-141 (hydrogenase 4, component D)
   *in cand* 0.9997 0.9992 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
   *in cand* 0.9997 0.9994 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)
   *in cand* 0.9995 0.9989 G7305 (hyfH) MONOMER0-144 (hydrogenase 4, component H)
   *in cand* 0.9996 0.9989 G7306 (hyfI) MONOMER0-151 (hydrogenase 4, small subunit)

- ANARESP1-PWY (respiration (anaerobic)) (degree of match pw to cand: 0.185, degree of match cand to pw: 0.417, average score: 0.592)
  Genes in pathway or complex:
             0.4079 0.0920 EG10803 (pykA) PKII-MONOMER (pyruvate kinase II monomer)
             0.4817 0.2365 EG10804 (pykF) PKI-MONOMER (pyruvate kinase I monomer)
             0.3670 0.0429 EG10543 (lpd) E3-MONOMER (E3 monomer)
             0.1492 0.0381 EG10025 (aceF) ACEF-LIPOATE (AceF-lipoate)
             0.2522 0.1238 EG10024 (aceE) E1P-MONOMER (subunit of E1p component of pyruvate dehydrogenase complex)
             0.7159 0.0975 EG10402 (gltA) CITSYN-MONOMER (citrate synthase monomer)
             0.3087 0.0548 EG12316 (acnB) ACONITATEDEHYDRB-MONOMER (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase)
             0.5085 0.0780 EG10489 (icd) ISOCITDEH-SUBUNIT (Icd)
             0.2344 0.0771 EG10756 (ppc) PEPCARBOX-MONOMER (Ppc)
             0.6374 0.0792 EG10576 (mdh) MALATE-DEHASE-MONOMER (Mdh)
             0.6022 0.3326 EG10358 (fumC) FUMC-MONOMER (fumarase C monomer)
             0.7405 0.4926 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)
             0.7818 0.5893 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
             0.3327 0.1507 G7627 (tdcE) KETOBUTFORMLY-MONOMER (2-ketobutyrate formate-lyase / pyruvate formate-lyase 4)
             0.3465 0.1785 EG10701 (pflB) PYRUVFORMLY-MONOMER (PflB)
             0.8876 0.5036 EG10258 (eno) ENOLASE-MONOMER (Eno)
   *in cand* 0.9998 0.9993 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9996 0.9990 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9996 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
   *in cand* 0.9996 0.9987 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.9979 0.9930 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
   *in cand* 0.9997 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
                NIL    NIL EG10285 (fdhF) FORMATEDEHYDROGH-MONOMER (formate dehydrogenase H)
             0.1608 0.0834 EG10333 (frdD) FUM-MEMB2 (fumarate reductase membrane protein)
             0.0899 0.0569 EG10332 (frdC) FUM-MEMB1 (fumarate reductase membrane protein)
             0.4954 0.1709 EG10331 (frdB) FUM-FE-S (fumarate reductase iron-sulfur protein)
             0.3744 0.1375 EG10330 (frdA) FUM-FLAVO (fumarate reductase flavoprotein)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9989 EG11282 (hyfB) MONOMER0-153 (hydrogenase 4, component B)
   *in cand* 0.9995 0.9986 G7300 (hyfC) MONOMER0-154 (hydrogenase 4, component C)
   *in cand* 0.9994 0.9986 G7301 (hyfD) MONOMER0-141 (hydrogenase 4, component D)
   *in cand* 0.9997 0.9992 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
   *in cand* 0.9997 0.9994 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)
   *in cand* 0.9995 0.9989 G7305 (hyfH) MONOMER0-144 (hydrogenase 4, component H)
   *in cand* 0.9996 0.9989 G7306 (hyfI) MONOMER0-151 (hydrogenase 4, small subunit)

- CPLX0-250 (hydrogenase 4) (degree of match pw to cand: 0.778, degree of match cand to pw: 0.583, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9989 G7305 (hyfH) MONOMER0-144 (hydrogenase 4, component H)
   *in cand* 0.9997 0.9992 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
             0.9991 0.9977 G7302 (hyfE) MONOMER0-142 (hydrogenase 4, component E)
   *in cand* 0.9994 0.9986 G7301 (hyfD) MONOMER0-141 (hydrogenase 4, component D)
   *in cand* 0.9995 0.9986 G7300 (hyfC) MONOMER0-154 (hydrogenase 4, component C)
   *in cand* 0.9996 0.9989 EG11282 (hyfB) MONOMER0-153 (hydrogenase 4, component B)
             0.9981 0.9952 EG11150 (hyfA) MONOMER0-152 (hydrogenase 4, component A)
   *in cand* 0.9996 0.9989 G7306 (hyfI) MONOMER0-151 (hydrogenase 4, small subunit)
   *in cand* 0.9997 0.9994 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9990 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9998 0.9993 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9997 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
   *in cand* 0.9996 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
   *in cand* 0.9996 0.9987 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11282 G7300 G7301 G7303 G7304 G7305 G7306 (centered at G7303)
EG10476 EG10477 EG10478 EG10479 EG10480 (centered at EG10478)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7306   G7305   G7304   G7303   G7301   G7300   EG11282   EG10480   EG10479   EG10478   EG10477   EG10476   
314/623219/623275/623290/623318/623131/623270/623290/623333/623281/623299/623262/623
AAEO224324:0:Tyes0-159---0-153-
AAUR290340:2:Tyes----0-------
AAVE397945:0:Tyes0---1994-11-7-6-
ABAC204669:0:Tyes--224---969022-3
ABAU360910:0:Tyes0--10956-9560---956
ABOR393595:0:Tyes---00-0----0
ABUT367737:0:Tyes--9-0---39--
ACAU438753:0:Tyes271302714271527182717271827130271427172718
ACEL351607:0:Tyes456504588-45545650460455
ACRY349163:8:Tyes46804674663464463468179467464463
ADEH290397:0:Tyes328332833282328103279327832833283328232793278
AEHR187272:0:Tyes1213---1334-01213--12071337
AFER243159:0:Tyes450-45145234544554500451454455
AHYD196024:0:Tyes7117107097070708707711710709708707
AMAR234826:0:Tyes0------0184-137-
AMAR329726:9:Tyes0---750--07821945781750
AMET293826:0:Tyes---2--1----0
ANAE240017:0:Tyes7------70---
APER272557:0:Tyes--7---0--76-
APHA212042:0:Tyes450-6500---450716650630-
ASAL382245:5:Tyes84858688087888485868788
ASP1667:2:Tyes----0-1-----
ASP232721:2:Tyes0--101461-11-7-6-
ASP62928:0:Tyes0-593601---591----
ASP62977:0:Tyes32633232700331-326332327331335
ASP76114:2:Tyes2115-211621170211921202115-211621192120
AVAR240292:3:Tyes--1455-0---9701455--
BABO262698:0:Tno---00-0-----
BABO262698:1:Tno07-----07-6-
BAMB339670:3:Tno10--0---103-4-
BAMB398577:3:Tno10--0---103-4-
BAMY326423:0:Tyes---00-0----0
BANT260799:0:Tno73-00--73--0
BANT261594:2:Tno73-00--73--0
BANT568206:2:Tyes73-00--73--0
BANT592021:2:Tno73-00--73--0
BAPH198804:0:Tyes061-----615-
BAPH372461:0:Tyes-50-----50--
BBAC264462:0:Tyes1-0736736-7351-0--
BBAC360095:0:Tyes703--7130-714703710-709-
BBRO257310:0:Tyes806--7960-0806--800-
BCAN483179:0:Tno---00-0-----
BCAN483179:1:Tno07-----07-6-
BCEN331271:2:Tno10--0---103-4-
BCEN331272:3:Tyes10--0---103-4-
BCER226900:1:Tyes73-00--73--0
BCER288681:0:Tno84-11-084--1
BCER315749:1:Tyes84-11-0846-1
BCER405917:1:Tyes84611-084--1
BCER572264:1:Tno73-00--73--0
BCIC186490:0:Tyes-38-0---384-
BCLA66692:0:Tyes---8770-877----877
BFRA272559:1:Tyes--500-0-3540
BFRA295405:0:Tno--500-0-3540
BHAL272558:0:Tyes---33-0----3
BHEN283166:0:Tyes103-0684--103-4-
BJAP224911:0:Fyes1449014481447-1445144414490144814451444
BLIC279010:0:Tyes---00-0-----
BMAL243160:0:Tno0------0----
BMAL243160:1:Tno--80----3-4-
BMAL320388:0:Tno0------0----
BMAL320388:1:Tno--08------4-
BMAL320389:0:Tyes0------0----
BMAL320389:1:Tyes--08------4-
BMEL224914:0:Tno---00-0-----
BMEL224914:1:Tno70-----70-1-
BMEL359391:0:Tno---00-0-----
BMEL359391:1:Tno07-----07-6-
BOVI236:0:Tyes---00-0-----
BOVI236:1:Tyes07-----07---
BPAR257311:0:Tno293--2830-0293--287-
BPER257313:0:Tyes0--10765-7650--6-
BPET94624:0:Tyes0--10895-89507---
BPSE272560:0:Tyes0-12--50-145
BPSE320372:0:Tno0-12--50-145
BPSE320373:0:Tno0-12--50-145
BPUM315750:0:Tyes---00-0----0
BQUI283165:0:Tyes0--10664-1107-6-
BSP107806:2:Tyes061--5--615-
BSP36773:2:Tyes10--0---103-4-
BSP376:0:Tyes90-----90---
BSUB:0:Tyes---00-0----0
BSUI204722:0:Tyes---00-0-----
BSUI204722:1:Tyes07-----07-6-
BSUI470137:0:Tno---00------0
BSUI470137:1:Tno07-----07-6-
BTHA271848:0:Tno5-43--05-410
BTHA271848:1:Tno--------0---
BTHE226186:0:Tyes6-500-06354-
BTHU281309:1:Tno84-11-084--1
BTHU412694:1:Tno5--00--5---0
BTRI382640:1:Tyes103-01041-1041103-4-
BVIE269482:7:Tyes10--0---103-4-
BWEI315730:4:Tyes84-11-084-51
BXEN266265:0:Tyes---0------2-
BXEN266265:1:Tyes5-4---05-4-0
CAULO:0:Tyes16---0--16----
CBEI290402:0:Tyes735004--3540
CBLO203907:0:Tyes-05-----051-
CBLO291272:0:Tno-05-----051-
CBUR227377:1:Tyes---147147--6--0144
CBUR360115:1:Tno---159159--7--0156
CBUR434922:2:Tno---00--137--1443
CCHL340177:0:Tyes0-277380-23-
CCON360104:2:Tyes64636261059586463625958
CCUR360105:0:Tyes1861851841830181180186185184181180
CDES477974:0:Tyes1-31066-0-1-301063
CDIP257309:0:Tyes------0-----
CEFF196164:0:Fyes------0-----
CFET360106:0:Tyes0123-6701267
CGLU196627:0:Tyes------0-----
CHOM360107:1:Tyes--0-8---50--
CHUT269798:0:Tyes855--845845--0848--845
CHYD246194:0:Tyes401-3984030402403401400398402403
CJAP155077:0:Tyes---00-0----0
CJEI306537:0:Tyes-----------0
CJEJ192222:0:Tyes--8-0---38--
CJEJ195099:0:Tno--8-0---384-
CJEJ354242:2:Tyes--8-0---38--
CJEJ360109:0:Tyes--8-0---38--
CJEJ407148:0:Tno--8-0---38--
CKOR374847:0:Tyes--056-5-201-
CMAQ397948:0:Tyes---------0--
CMET456442:0:Tyes0-11091110-111211130-110911121113
CMIC31964:2:Tyes----0------0
CMIC443906:2:Tyes----0------2
CPEL335992:0:Tyes07-----07-610
CPHY357809:0:Tyes1-3--0-1430-
CPRO264201:0:Fyes-5088---5048
CPSY167879:0:Tyes---00-0----0
CRUT413404:0:Tyes0--10-6-07-6-
CSAL290398:0:Tyes-22562261022532257--2256226122570
CSP501479:8:Fyes2090---0-02090----
CSP78:2:Tyes110-----11----
CTEP194439:0:Tyes0-277380-23-
CTET212717:0:Tyes---11-1----0
CVES412965:0:Tyes0----6-07-6-
CVIO243365:0:Tyes1858--10---0--6-
DARO159087:0:Tyes0------07---
DETH243164:0:Tyes0-679680686826830655682683
DGEO319795:1:Tyes-50-8---504-
DHAF138119:0:Tyes535053653716015395405350536539540
DPSY177439:2:Tyes0012-450029145
DRAD243230:3:Tyes-606612-0---606612607-
DRED349161:0:Tyes735-0---354-
DSHI398580:3:Tyes----0-------
DSHI398580:5:Tyes583--0---583597--0
DSP216389:0:Tyes0-554555365575580335557558
DSP255470:0:Tno0-704705367077080335707708
DVUL882:1:Tyes2-01844-1845184421847184918451844
ECAN269484:0:Tyes172-3130---172245-310-
ECAR218491:0:Tyes012356701267
ECHA205920:0:Tyes581--0---581492---
ECOL199310:0:Tno453454455-0456457453454455456457
ECOL316407:0:Tno762314210229230231232233
ECOL331111:6:Tno190189414-0186416412413414415416
ECOL362663:0:Tno373374375-0376377373374375376377
ECOL364106:1:Tno521522523-0524525521522523524525
ECOL405955:2:Tyes495496497-0498499495496497498499
ECOL409438:6:Tyes872125310210211212213214
ECOL413997:0:Tno65204312050202203204205206
ECOL439855:4:Tno762054210203204205206207
ECOL469008:0:Tno20620720820921112134320810
ECOL481805:0:Tno20620720820921112124320810
ECOL585034:0:Tno762774210275276277278279
ECOL585035:0:Tno547548549-0550551547548549550551
ECOL585055:0:Tno2472464662440467242464465466467468
ECOL585056:2:Tno762534210251252253254255
ECOL585057:0:Tno762954210293294295296297
ECOL585397:0:Tno431432433-0434435431432433434435
ECOL83334:0:Tno762444210242243244245246
ECOLI:0:Tno7654210239240241242243
ECOO157:0:Tno762474210245246247248249
EFER585054:1:Tyes3313323333343363373384333310
ELIT314225:0:Tyes17414-1-0174---
ERUM254945:0:Tyes204--0399--204276---
ERUM302409:0:Tno203--0393--203276---
ESP42895:1:Tyes382383384-0385386382383384385386
FALN326424:0:Tyes--0-8---50--
FJOH376686:0:Tyes--8004-10-8--
FNOD381764:0:Tyes-----01---01
FPHI484022:1:Tyes0------07-6-
FRANT:0:Tno0------07-6-
FSP106370:0:Tyes-50-8---50--
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