CANDIDATE ID: 77

CANDIDATE ID: 77

NUMBER OF GENES: 12
AVERAGE SCORE:    9.9920703e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6350 (nadD) (b0639)
   Products of gene:
     - NICONUCADENYLYLTRAN-MONOMER (nicotinate-mononucleotide adenylyltransferase)
       Reactions:
        ATP + nicotinate mononucleotide  ->  diphosphate + nicotinate adenine dinucleotide
         In pathways
         PWY-3502 (PWY-3502)
         PWY0-781 (aspartate superpathway)
         NADSYN-PWY (NADSYN-PWY)
         PYRIDNUCSAL-PWY (NAD salvage pathway I)
         PYRIDNUCSYN-PWY (NAD biosynthesis I (from aspartate))
         PWY-5381 (PWY-5381)
         PWY-5653 (PWY-5653)

- EG12851 (ybeL) (b0643)
   Products of gene:
     - EG12851-MONOMER (conserved protein)

- EG11592 (ybeD) (b0631)
   Products of gene:
     - EG11592-MONOMER (conserved protein)

- EG11591 (lipB) (b0630)
   Products of gene:
     - EG11591-MONOMER (lipoyl-protein ligase)
       Reactions:
        an apo-GcvH protein + a lipoyl-[acp]  =  H-Gcv-protein-(lipoyl)lysine + a holo-[acp]
        SucB + lipoyl-ACP  =  SucB-lipoate + a holo-[acp]
        lipoate acetyltransferase / dihydrolipoamide acetyltransferase + lipoyl-ACP  =  AceF-lipoate + a holo-[acp]
        an octanoyl-[acp] + a non-lipoylated protein-lipoyl domain  ->  an octanoylated protein lipoyl-domain + a holo-[acp]
         In pathways
         PWY0-501 (lipoate biosynthesis and incorporation I)

- EG11412 (holA) (b0640)
   Products of gene:
     - EG11412-MONOMER (DNA polymerase III, δ subunit)
     - CPLX0-3801 (DNA polymerase III, preinitiation complex)
     - CPLX0-3803 (DNA polymerase III, holoenzyme)

- EG11255 (ybeB) (b0637)
   Products of gene:
     - EG11255-MONOMER (predicted protein)

- EG11254 (rlmH) (b0636)
   Products of gene:
     - EG11254-MONOMER (23S rRNA m3Ψ1915 methyltransferase)
     - CPLX0-7423 (23S rRNA m3Ψ1915 methyltransferase)
       Reactions:
        S-adenosyl-L-methionine + pseudouridine1915 in 23S rRNA  =  S-adenosyl-L-homocysteine + N3-methylpseudouridine1915 in 23S rRNA

- EG10855 (lptE) (b0641)
   Products of gene:
     - EG10855-MONOMER (rare lipoprotein LptE)
     - CPLX0-7628 (outer membrane LPS assembly complex)

- EG10854 (rlpA) (b0633)
   Products of gene:
     - EG10854-MONOMER (rare lipoprotein RlpA)

- EG10607 (mrdB) (b0634)
   Products of gene:
     - EG10607-MONOMER (rod shape-determining membrane protein; sensitivity to radiation and drugs)

- EG10606 (mrdA) (b0635)
   Products of gene:
     - EG10606-MONOMER (cell shape; peptidoglycan synthetase; penicillin-binding protein 2)
       Reactions:
        peptidoglycan D-alanyl-DAP crosslink + H2O  =  peptidoglycan tetrapeptide, glycan chain 2 + peptidoglycan tetrapeptide, glycan chain 1

- EG10201 (dacA) (b0632)
   Products of gene:
     - EG10201-MONOMER (D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5)
       Reactions:
        a beta-lactam + H2O  ->  a substituted beta-amino acid
        a lipid II + H2O  =  a N-acetylglucosamine--N-acetylmuramyl-(tetrapeptide) pyrophosphoryl-undecaprenol + D-alanine



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ORGANISMS CONTAINING AT LEAST 10 GENES FROM THE GROUP:

Total number of orgs: 131
Effective number of orgs (counting one per cluster within 468 clusters): 84

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175812
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295312
YPES386656 ncbi Yersinia pestis Pestoides F12
YPES377628 ncbi Yersinia pestis Nepal51612
YPES360102 ncbi Yersinia pestis Antiqua12
YPES349746 ncbi Yersinia pestis Angola12
YPES214092 ncbi Yersinia pestis CO9212
YPES187410 ncbi Yersinia pestis KIM 1012
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808112
VVUL216895 ncbi Vibrio vulnificus CMCP611
VVUL196600 ncbi Vibrio vulnificus YJ01611
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 221063311
VFIS312309 ncbi Vibrio fischeri ES11411
VCHO345073 ncbi Vibrio cholerae O39511
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696111
TTUR377629 ncbi Teredinibacter turnerae T790110
TDEN292415 ncbi Thiobacillus denitrificans ATCC 2525911
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT212
SSP94122 ncbi Shewanella sp. ANA-312
SSON300269 ncbi Shigella sonnei Ss04612
SSED425104 ncbi Shewanella sediminis HAW-EB312
SPRO399741 ncbi Serratia proteamaculans 56812
SPEA398579 ncbi Shewanella pealeana ATCC 70034512
SONE211586 ncbi Shewanella oneidensis MR-112
SLOI323850 ncbi Shewanella loihica PV-412
SHIGELLA ncbi Shigella flexneri 2a str. 2457T12
SHAL458817 ncbi Shewanella halifaxensis HAW-EB412
SGLO343509 ncbi Sodalis glossinidius morsitans11
SFLE373384 ncbi Shigella flexneri 5 str. 840112
SFLE198214 ncbi Shigella flexneri 2a str. 30112
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47612
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6712
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915012
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1812
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty212
SDYS300267 ncbi Shigella dysenteriae Sd19712
SDEN318161 ncbi Shewanella denitrificans OS21712
SDEG203122 ncbi Saccharophagus degradans 2-4012
SBOY300268 ncbi Shigella boydii Sb22712
SBAL402882 ncbi Shewanella baltica OS18512
SBAL399599 ncbi Shewanella baltica OS19512
RSOL267608 ncbi Ralstonia solanacearum GMI100010
RMET266264 ncbi Ralstonia metallidurans CH3410
REUT381666 ncbi Ralstonia eutropha H1610
REUT264198 ncbi Ralstonia eutropha JMP13410
PSTU379731 ncbi Pseudomonas stutzeri A150110
PSP296591 ncbi Polaromonas sp. JS66610
PPRO298386 ncbi Photobacterium profundum SS911
PMUL272843 ncbi Pasteurella multocida multocida Pm7010
PMEN399739 ncbi Pseudomonas mendocina ymp10
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO111
PING357804 ncbi Psychromonas ingrahamii 3711
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC12512
PATL342610 ncbi Pseudoalteromonas atlantica T6c11
PAER208964 ncbi Pseudomonas aeruginosa PAO110
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA1410
NMUL323848 ncbi Nitrosospira multiformis ATCC 2519611
NEUT335283 ncbi Nitrosomonas eutropha C9110
NEUR228410 ncbi Nitrosomonas europaea ATCC 1971810
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E10
MSP400668 ncbi Marinomonas sp. MWYL110
MFLA265072 ncbi Methylobacillus flagellatus KT10
MCAP243233 ncbi Methylococcus capsulatus Bath11
MAQU351348 ncbi Marinobacter aquaeolei VT812
LPNE297245 ncbi Legionella pneumophila Lens10
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 110
LCHO395495 ncbi Leptothrix cholodnii SP-610
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857812
JSP375286 ncbi Janthinobacterium sp. Marseille10
ILOI283942 ncbi Idiomarina loihiensis L2TR11
HSOM205914 ncbi Haemophilus somnus 129PT10
HINF71421 ncbi Haemophilus influenzae Rd KW2010
HINF374930 ncbi Haemophilus influenzae PittEE10
HINF281310 ncbi Haemophilus influenzae 86-028NP10
HHAL349124 ncbi Halorhodospira halophila SL111
HDUC233412 ncbi Haemophilus ducreyi 35000HP10
HCHE349521 ncbi Hahella chejuensis KCTC 239610
HARS204773 ncbi Herminiimonas arsenicoxydans10
ESP42895 Enterobacter sp.12
EFER585054 ncbi Escherichia fergusonii ATCC 3546912
ECOO157 ncbi Escherichia coli O157:H7 EDL93312
ECOL83334 Escherichia coli O157:H712
ECOL585397 ncbi Escherichia coli ED1a12
ECOL585057 ncbi Escherichia coli IAI3912
ECOL585056 ncbi Escherichia coli UMN02612
ECOL585055 ncbi Escherichia coli 5598912
ECOL585035 ncbi Escherichia coli S8812
ECOL585034 ncbi Escherichia coli IAI112
ECOL481805 ncbi Escherichia coli ATCC 873912
ECOL469008 ncbi Escherichia coli BL21(DE3)12
ECOL439855 ncbi Escherichia coli SMS-3-512
ECOL413997 ncbi Escherichia coli B str. REL60612
ECOL409438 ncbi Escherichia coli SE1112
ECOL405955 ncbi Escherichia coli APEC O111
ECOL364106 ncbi Escherichia coli UTI8912
ECOL362663 ncbi Escherichia coli 53612
ECOL331111 ncbi Escherichia coli E24377A12
ECOL316407 ncbi Escherichia coli K-12 substr. W311012
ECOL199310 ncbi Escherichia coli CFT07312
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104312
DARO159087 ncbi Dechloromonas aromatica RCB10
CVIO243365 ncbi Chromobacterium violaceum ATCC 1247210
CSAL290398 ncbi Chromohalobacter salexigens DSM 304310
CPSY167879 ncbi Colwellia psychrerythraea 34H12
CJAP155077 Cellvibrio japonicus11
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-11110
BVIE269482 ncbi Burkholderia vietnamiensis G410
BTHA271848 ncbi Burkholderia thailandensis E26410
BSP36773 Burkholderia sp.10
BPSE320372 ncbi Burkholderia pseudomallei 1710b10
BPSE272560 ncbi Burkholderia pseudomallei K9624310
BPET94624 Bordetella petrii10
BPER257313 ncbi Bordetella pertussis Tohama I10
BPAR257311 ncbi Bordetella parapertussis 1282210
BMAL320389 ncbi Burkholderia mallei NCTC 1024710
BMAL320388 ncbi Burkholderia mallei SAVP110
BMAL243160 ncbi Burkholderia mallei ATCC 2334410
BCEN331272 ncbi Burkholderia cenocepacia HI242410
BCEN331271 ncbi Burkholderia cenocepacia AU 105410
BBRO257310 ncbi Bordetella bronchiseptica RB5010
BAMB398577 ncbi Burkholderia ambifaria MC40-610
BAMB339670 ncbi Burkholderia ambifaria AMMD10
ASP76114 ncbi Aromatoleum aromaticum EbN110
ASP62928 ncbi Azoarcus sp. BH7210
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44912
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL0310
APLE416269 ncbi Actinobacillus pleuropneumoniae L2010
AHYD196024 Aeromonas hydrophila dhakensis12
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 2327010
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-110
ABAU360910 ncbi Bordetella avium 197N10


Names of the homologs of the genes in the group in each of these orgs
  G6350   EG12851   EG11592   EG11591   EG11412   EG11255   EG11254   EG10855   EG10854   EG10607   EG10606   EG10201   
YPSE349747 YPSIP31758_2929YPSIP31758_2924YPSIP31758_2953YPSIP31758_2954YPSIP31758_2928YPSIP31758_2947YPSIP31758_2948YPSIP31758_2927YPSIP31758_2951YPSIP31758_2950YPSIP31758_2949YPSIP31758_2952
YPSE273123 YPTB1100YPTB1104YPTB1093YPTB1092YPTB1101YPTB1099YPTB1098YPTB1102YPTB1095YPTB1096YPTB1097YPTB1351
YPES386656 YPDSF_2646YPDSF_2642YPDSF_2653YPDSF_2654YPDSF_2645YPDSF_2647YPDSF_2648YPDSF_2644YPDSF_2651YPDSF_2650YPDSF_2649YPDSF_2652
YPES377628 YPN_1092YPN_1096YPN_1085YPN_1084YPN_1093YPN_1091YPN_1090YPN_1094YPN_1087YPN_1088YPN_1089YPN_2659
YPES360102 YPA_2490YPA_2486YPA_2499YPA_2500YPA_2489YPA_2491YPA_2492YPA_2488YPA_2495YPA_2494YPA_2493YPA_2498
YPES349746 YPANGOLA_A1845YPANGOLA_A1840YPANGOLA_A1853YPANGOLA_A1854YPANGOLA_A1844YPANGOLA_A1846YPANGOLA_A1847YPANGOLA_A1843YPANGOLA_A1851YPANGOLA_A1850YPANGOLA_A1849YPANGOLA_A1852
YPES214092 YPO2607YPO2611YPO2600YPO2599YPO2608YPO2606YPO2605YPO2609YPO2602YPO2603YPO2604YPO2601
YPES187410 Y1181Y1185Y1174Y1173Y1182Y1180Y1179Y1183Y1176Y1177Y1178Y1175
YENT393305 YE2999YE2995YE3006YE3007YE2998YE3000YE3001YE2997YE3004YE3003YE3002YE3005
VVUL216895 VV1_0271VV1_0282VV1_0283VV1_0275VV1_0276VV1_0277VV1_0274VV1_0280VV1_0279VV2_1370VV1_0281
VVUL196600 VV0912VV0902VV0901VV0909VV0908VV0907VV0910VV0904VV0905VV0906VV0903
VPAR223926 VP0728VP0718VP0717VP0725VP0724VP0723VP0726VP0720VP0721VP0722VP0719
VFIS312309 VF0754VF0744VF0743VF0751VF0750VF0749VF0752VF0746VF0747VF1481VF0745
VCHO345073 VC0395_A0479VC0395_A0469VC0395_A0468VC0395_A0476VC0395_A0475VC0395_A0474VC0395_A0477VC0395_A0471VC0395_A0472VC0395_A0473VC0395_A0470
VCHO VC0957VC0945VC0944VC0953VC0952VC0951VC0954VC0948VC0949VC0950VC0947
TTUR377629 TERTU_0609TERTU_0610TERTU_3887TERTU_0601TERTU_0602TERTU_3886TERTU_0606TERTU_0604TERTU_0603TERTU_0608
TDEN292415 TBD_2441TBD_0268TBD_0269TBD_2443TBD_2440TBD_2439TBD_2444TBD_0265TBD_0264TBD_0263TBD_0647
STYP99287 STM0645STM0653STM0636STM0635STM0646STM0642STM0641STM0647STM0638STM0639STM1910STM0637
SSP94122 SHEWANA3_0998SHEWANA3_1002SHEWANA3_0990SHEWANA3_0989SHEWANA3_0999SHEWANA3_0997SHEWANA3_0996SHEWANA3_1000SHEWANA3_0992SHEWANA3_0994SHEWANA3_0995SHEWANA3_0991
SSON300269 SSO_0593SSO_0597SSO_0585SSO_0584SSO_0594SSO_0591SSO_0590SSO_0595SSO_0587SSO_0588SSO_0589SSO_0586
SSED425104 SSED_3482SSED_3478SSED_3490SSED_3491SSED_3481SSED_3483SSED_3484SSED_3480SSED_3488SSED_3486SSED_3485SSED_3489
SPRO399741 SPRO_1204SPRO_1208SPRO_1197SPRO_1196SPRO_1205SPRO_1203SPRO_1202SPRO_1206SPRO_1199SPRO_1200SPRO_2356SPRO_1628
SPEA398579 SPEA_3146SPEA_3142SPEA_3154SPEA_3155SPEA_3145SPEA_3147SPEA_3148SPEA_3144SPEA_3152SPEA_3150SPEA_3149SPEA_3153
SONE211586 SO_1171SO_1175SO_1163SO_1162SO_1172SO_1170SO_1169SO_1173SO_1165SO_1167SO_1168SO_1164
SLOI323850 SHEW_2932SHEW_2928SHEW_2940SHEW_2941SHEW_2931SHEW_2933SHEW_2934SHEW_2930SHEW_2938SHEW_2936SHEW_2935SHEW_2939
SHIGELLA YBENYBELYBEDLIPBHOLAYBEBYBEARLPBRLPAMRDBMRDADACA
SHAL458817 SHAL_3231SHAL_3227SHAL_3239SHAL_3240SHAL_3230SHAL_3232SHAL_3233SHAL_3229SHAL_3237SHAL_3235SHAL_3234SHAL_3238
SGLO343509 SG0800SG0804SG0794SG0793SG0801SG0799SG0798SG0802SG0796SG0797SG0795
SFLE373384 SFV_0687SFV_0683SFV_0695SFV_0696SFV_0686SFV_0689SFV_0690SFV_0685SFV_0693SFV_0692SFV_0691SFV_0694
SFLE198214 AAN42278.1AAN42274.1AAN42286.1AAN42287.1AAN42277.1AAN42280.1AAN42281.1AAN42276.1AAN42284.1AAN42283.1AAN42282.1AAN42285.1
SENT454169 SEHA_C0761SEHA_C0770SEHA_C0752SEHA_C0751SEHA_C0762SEHA_C0758SEHA_C0757SEHA_C0763SEHA_C0754SEHA_C0755SEHA_C2125SEHA_C0753
SENT321314 SCH_0675SCH_0682SCH_0665SCH_0664SCH_0676SCH_0672SCH_0671SCH_0677SCH_0668SCH_0669SCH_1917SCH_0666
SENT295319 SPA2089SPA2081SPA2098SPA2099SPA2088SPA2092SPA2093SPA2087SPA2096SPA2095SPA2094SPA2097
SENT220341 STY0696STY0704STY0687STY0686STY0697STY0693STY0692STY0698STY0689STY0690STY0691STY0688
SENT209261 T2222T2214T2231T2232T2221T2225T2226T2220T2229T2228T2227T2230
SDYS300267 SDY_0561SDY_0567SDY_0553SDY_0552SDY_0562SDY_0559SDY_0558SDY_0563SDY_0555SDY_0556SDY_0557SDY_0554
SDEN318161 SDEN_0794SDEN_0798SDEN_0869SDEN_0868SDEN_0795SDEN_0857SDEN_0856SDEN_0796SDEN_0852SDEN_0854SDEN_0855SDEN_0851
SDEG203122 SDE_3344SDE_0534SDE_3336SDE_3335SDE_3310SDE_3343SDE_3342SDE_3309SDE_3338SDE_3340SDE_3341SDE_3337
SBOY300268 SBO_0503SBO_0507SBO_0495SBO_0494SBO_0504SBO_0501SBO_0500SBO_0505SBO_0497SBO_0498SBO_0499SBO_0496
SBAL402882 SHEW185_3314SHEW185_3310SHEW185_3322SHEW185_3323SHEW185_3313SHEW185_3315SHEW185_3316SHEW185_3312SHEW185_3320SHEW185_3318SHEW185_3317SHEW185_3321
SBAL399599 SBAL195_3450SBAL195_3446SBAL195_3458SBAL195_3459SBAL195_3449SBAL195_3451SBAL195_3452SBAL195_3448SBAL195_3456SBAL195_3454SBAL195_3453SBAL195_3457
RSOL267608 RSC2193RSC0326RSC0323RSC2742RSC2194RSC2195RSC3267RSC0063RSC0062RSC0327
RMET266264 RMET_0782RMET_0224RMET_0060RMET_2971RMET_0781RMET_0780RMET_3432RMET_0055RMET_0054RMET_0225
REUT381666 H16_A0913H16_A0303H16_A0122H16_A3137H16_A0912H16_A0911H16_A3581H16_A0117H16_A0116H16_A0302
REUT264198 REUT_A2525REUT_A0281REUT_A0085REUT_A2832REUT_A2526REUT_A2527REUT_A3267REUT_A0080REUT_A0079REUT_A0280
PSTU379731 PST_3784PST_3776PST_3775PST_3770PST_3783PST_3782PST_3778PST_3780PST_3781PST_3777
PSP296591 BPRO_1971BPRO_0316BPRO_0314BPRO_4600BPRO_1972BPRO_1973BPRO_4129BPRO_1091BPRO_0225BPRO_0250
PPRO298386 PBPRA2884PBPRA2894PBPRA2895PBPRA2887PBPRA2888PBPRA2889PBPRA2886PBPRA2892PBPRA2891PBPRB0070PBPRA2893
PMUL272843 PM1928PM1929PM1216PM1922PM1923PM1215PM1926PM1925PM1924PM1927
PMEN399739 PMEN_3801PMEN_3793PMEN_3792PMEN_3788PMEN_3800PMEN_3799PMEN_3795PMEN_3797PMEN_3798PMEN_3794
PLUM243265 PLU1300PLU1293PLU1292PLU1301PLU1299PLU1298PLU1302PLU1295PLU1296PLU1297PLU1294
PING357804 PING_1188PING_3028PING_3029PING_1189PING_1137PING_1136PING_1190PING_1133PING_1134PING_1135PING_3027
PHAL326442 PSHAA1028PSHAA1032PSHAA1021PSHAA1020PSHAA1029PSHAA1027PSHAA1026PSHAA1030PSHAA1023PSHAA1024PSHAA1025PSHAA1022
PATL342610 PATL_1563PATL_1555PATL_1554PATL_1564PATL_1562PATL_1561PATL_1565PATL_1557PATL_1559PATL_1560PATL_1556
PAER208964 PA4006PA3998PA3997PA3989PA4005PA4004PA4000PA4002PA4003PA3999
PAER208963 PA14_12020PA14_12110PA14_12120PA14_12200PA14_12030PA14_12050PA14_12090PA14_12070PA14_12060PA14_12100
NMUL323848 NMUL_A0360NMUL_A1989NMUL_A1988NMUL_A0513NMUL_A0361NMUL_A0362NMUL_A0512NMUL_A0315NMUL_A0316NMUL_A0317NMUL_A1991
NEUT335283 NEUT_1610NEUT_0759NEUT_0758NEUT_1427NEUT_1611NEUT_1612NEUT_1587NEUT_1588NEUT_1589NEUT_0761
NEUR228410 NE0359NE1487NE1488NE1137NE0358NE0357NE2065NE2066NE2067NE1485
MSUC221988 MS1828MS1827MS0332MS1834MS1833MS0337MS1830MS1831MS1832MS1829
MSP400668 MMWYL1_2851MMWYL1_2842MMWYL1_2917MMWYL1_2850MMWYL1_2849MMWYL1_2916MMWYL1_2845MMWYL1_2847MMWYL1_2848MMWYL1_2844
MFLA265072 MFLA_2159MFLA_2499MFLA_2500MFLA_2157MFLA_0593MFLA_0592MFLA_2496MFLA_2495MFLA_2494MFLA_2497
MCAP243233 MCA_1879MCA_0107MCA_0109MCA_1451MCA_2027MCA_0377MCA_1452MCA_2972MCA_0104MCA_0103MCA_0105
MAQU351348 MAQU_2416MAQU_2743MAQU_2409MAQU_2408MAQU_2746MAQU_2415MAQU_2414MAQU_2745MAQU_2411MAQU_2412MAQU_2413MAQU_2410
LPNE297245 LPL1298LPL1514LPL1299LPL1328LPL1327LPL1300LPL1518LPL1325LPL1326LPL1517
LPNE272624 LPG1345LPG1511LPG1346LPG1377LPG1376LPG1347LPG1508LPG1374LPG1375LPG1509
LCHO395495 LCHO_1950LCHO_4239LCHO_0400LCHO_0481LCHO_1949LCHO_1948LCHO_1244LCHO_0500LCHO_0501LCHO_4237
KPNE272620 GKPORF_B5095GKPORF_B5099GKPORF_B5087GKPORF_B5086GKPORF_B5096GKPORF_B5093GKPORF_B5092GKPORF_B5097GKPORF_B5089GKPORF_B5090GKPORF_B0907GKPORF_B5088
JSP375286 MMA_0541MMA_3250MMA_3251MMA_2898MMA_0540MMA_0539MMA_0201MMA_0200MMA_0199MMA_3248
ILOI283942 IL0950IL0958IL0959IL0949IL0951IL0952IL0948IL0956IL0954IL0953IL0957
HSOM205914 HS_0317HS_0316HS_1555HS_0323HS_0322HS_1556HS_0319HS_0320HS_0321HS_0318
HINF71421 HI_0028HI_0027HI_0923HI_0034HI_0033HI_0922HI_0030HI_0031HI_0032HI_0029
HINF374930 CGSHIEE_03170CGSHIEE_03175CGSHIEE_07400CGSHIEE_03140CGSHIEE_03145CGSHIEE_07405CGSHIEE_03160CGSHIEE_03155CGSHIEE_03150CGSHIEE_03165
HINF281310 NTHI0035NTHI0034NTHI1092NTHI0042NTHI0041NTHI1091NTHI0037NTHI0038NTHI0039NTHI0036
HHAL349124 HHAL_2141HHAL_2146HHAL_1014HHAL_1015HHAL_2143HHAL_2140HHAL_2139HHAL_1011HHAL_1009HHAL_1008HHAL_1012
HDUC233412 HD_2015HD_2013HD_1130HD_2023HD_2022HD_1131HD_2017HD_2019HD_2020HD_2016
HCHE349521 HCH_05846HCH_05353HCH_05837HCH_05357HCH_05845HCH_05844HCH_05840HCH_05842HCH_05843HCH_05839
HARS204773 HEAR0555HEAR3001HEAR3002HEAR2663HEAR0554HEAR0553HEAR0173HEAR0172HEAR0171HEAR2999
ESP42895 ENT638_1173ENT638_1177ENT638_1166ENT638_1165ENT638_1174ENT638_1172ENT638_1171ENT638_1175ENT638_1168ENT638_1169ENT638_1170ENT638_1167
EFER585054 EFER_2467EFER_2463EFER_2474EFER_2475EFER_2466EFER_2468EFER_2469EFER_2465EFER_2472EFER_2471EFER_2470EFER_2473
ECOO157 YBENYBELYBEDLIPBHOLAYBEBYBEARLPBRLPAMRDBMRDADACA
ECOL83334 ECS0677ECS0681ECS0669ECS0668ECS0678ECS0675ECS0674ECS0679ECS0671ECS0672ECS0673ECS0670
ECOL585397 ECED1_0636ECED1_0640ECED1_0627ECED1_0626ECED1_0637ECED1_0634ECED1_0633ECED1_0638ECED1_0630ECED1_0631ECED1_0632ECED1_0628
ECOL585057 ECIAI39_0614ECIAI39_0618ECIAI39_0606ECIAI39_0605ECIAI39_0615ECIAI39_0612ECIAI39_0611ECIAI39_0616ECIAI39_0608ECIAI39_0609ECIAI39_0610ECIAI39_0607
ECOL585056 ECUMN_0733ECUMN_0737ECUMN_0724ECUMN_0723ECUMN_0734ECUMN_0731ECUMN_0730ECUMN_0735ECUMN_0727ECUMN_0728ECUMN_0729ECUMN_0725
ECOL585055 EC55989_0631EC55989_0635EC55989_0623EC55989_0622EC55989_0632EC55989_0629EC55989_0628EC55989_0633EC55989_0625EC55989_0626EC55989_0627EC55989_0624
ECOL585035 ECS88_0681ECS88_0685ECS88_0672ECS88_0671ECS88_0682ECS88_0679ECS88_0678ECS88_0683ECS88_0675ECS88_0676ECS88_0677ECS88_0673
ECOL585034 ECIAI1_0623ECIAI1_0627ECIAI1_0614ECIAI1_0613ECIAI1_0624ECIAI1_0621ECIAI1_0620ECIAI1_0625ECIAI1_0617ECIAI1_0618ECIAI1_0619ECIAI1_0615
ECOL481805 ECOLC_3006ECOLC_3002ECOLC_3014ECOLC_3015ECOLC_3005ECOLC_3008ECOLC_3009ECOLC_3004ECOLC_3012ECOLC_3011ECOLC_3010ECOLC_3013
ECOL469008 ECBD_3012ECBD_3008ECBD_3020ECBD_3021ECBD_3011ECBD_3014ECBD_3015ECBD_3010ECBD_3018ECBD_3017ECBD_3016ECBD_3019
ECOL439855 ECSMS35_0659ECSMS35_0663ECSMS35_0651ECSMS35_0650ECSMS35_0660ECSMS35_0657ECSMS35_0656ECSMS35_0661ECSMS35_0653ECSMS35_0654ECSMS35_0655ECSMS35_0652
ECOL413997 ECB_00608ECB_00612ECB_00600ECB_00599ECB_00609ECB_00606ECB_00605ECB_00610ECB_00602ECB_00603ECB_00604ECB_00601
ECOL409438 ECSE_0708ECSE_0712ECSE_0698ECSE_0697ECSE_0709ECSE_0705ECSE_0704ECSE_0710ECSE_0701ECSE_0702ECSE_0703ECSE_0699
ECOL405955 APECO1_1416APECO1_1413APECO1_1424APECO1_1425APECO1_1415APECO1_1419APECO1_1414APECO1_1422APECO1_1421APECO1_1420APECO1_1423
ECOL364106 UTI89_C0642UTI89_C0646UTI89_C0633UTI89_C0632UTI89_C0643UTI89_C0639UTI89_C0638UTI89_C0644UTI89_C0635UTI89_C0636UTI89_C0637UTI89_C0634
ECOL362663 ECP_0669ECP_0673ECP_0661ECP_0660ECP_0670ECP_0667ECP_0666ECP_0671ECP_0663ECP_0664ECP_0665ECP_0662
ECOL331111 ECE24377A_0665ECE24377A_0669ECE24377A_0656ECE24377A_0655ECE24377A_0666ECE24377A_0663ECE24377A_0662ECE24377A_0667ECE24377A_0658ECE24377A_0660ECE24377A_0661ECE24377A_0657
ECOL316407 ECK0632:JW0634:B0639ECK0636:JW0638:B0643ECK0624:JW0626:B0631ECK0623:JW5089:B0630ECK0633:JW0635:B0640ECK0630:JW5090:B0637ECK0629:JW0631:B0636ECK0634:JW0636:B0641ECK0626:JW0628:B0633ECK0627:JW0629:B0634ECK0628:JW0630:B0635ECK0625:JW0627:B0632
ECOL199310 C0730C0734C0721C0720C0731C0728C0727C0732C0724C0725C0726C0722
ECAR218491 ECA1306ECA1310ECA1299ECA1298ECA1307ECA1305ECA1304ECA1308ECA1301ECA1302ECA1303ECA1300
DARO159087 DARO_0169DARO_0289DARO_0288DARO_0542DARO_0170DARO_0171DARO_0111DARO_0112DARO_0113DARO_0291
CVIO243365 CV_0519CV_3095CV_3096CV_0507CV_0518CV_0517CV_4384CV_4361CV_4360CV_3094
CSAL290398 CSAL_1542CSAL_1550CSAL_1551CSAL_2346CSAL_1543CSAL_1544CSAL_1548CSAL_1546CSAL_1545CSAL_1549
CPSY167879 CPS_1718CPS_1723CPS_1711CPS_1710CPS_1720CPS_1717CPS_1716CPS_1721CPS_1713CPS_1714CPS_1715CPS_1712
CJAP155077 CJA_0786CJA_0795CJA_0796CJA_0452CJA_0787CJA_0788CJA_0453CJA_0792CJA_0790CJA_0789CJA_0793
CBUR434922 COXBU7E912_1509COXBU7E912_1346COXBU7E912_1350COXBU7E912_1508COXBU7E912_1511COXBU7E912_1512COXBU7E912_1060COXBU7E912_1514COXBU7E912_1513COXBU7E912_1345
BVIE269482 BCEP1808_2382BCEP1808_2987BCEP1808_2984BCEP1808_0624BCEP1808_2383BCEP1808_2384BCEP1808_0246BCEP1808_3198BCEP1808_3197BCEP1808_2989
BTHA271848 BTH_I1012BTH_I0382BTH_I0385BTH_I1213BTH_I1011BTH_I1010BTH_I3150BTH_I0142BTH_I0143BTH_I0380
BSP36773 BCEP18194_A5624BCEP18194_A6234BCEP18194_A6231BCEP18194_A3742BCEP18194_A5625BCEP18194_A5626BCEP18194_A3389BCEP18194_A6465BCEP18194_A6464BCEP18194_A6236
BPSE320372 BURPS1710B_A1456BURPS1710B_A0664BURPS1710B_A0667BURPS1710B_A3726BURPS1710B_A1455BURPS1710B_A1454BURPS1710B_A0047BURPS1710B_A0384BURPS1710B_A0385BURPS1710B_A0662
BPSE272560 BPSL1162BPSL0410BPSL0413BPSL2936BPSL1161BPSL1160BPSL3276BPSL0182BPSL0183BPSL0408
BPET94624 BPET3102BPET4805BPET4804BPET3326BPET3103BPET3104BPET0442BPET0431BPET0430BPET3320
BPER257313 BP2311BP0104BP0105BP2042BP2312BP2313BP0689BP0378BP0377BP0102
BPAR257311 BPP2419BPP0168BPP0169BPP1729BPP2418BPP2417BPP4039BPP4052BPP4053BPP0166
BMAL320389 BMA10247_0355BMA10247_3190BMA10247_3187BMA10247_2638BMA10247_0354BMA10247_0353BMA10247_2970BMA10247_2370BMA10247_2371BMA10247_3192
BMAL320388 BMASAVP1_A1072BMASAVP1_A0222BMASAVP1_A0219BMASAVP1_A0368BMASAVP1_A1071BMASAVP1_A1070BMASAVP1_A3399BMASAVP1_A2789BMASAVP1_A2788BMASAVP1_A0224
BMAL243160 BMA_1887BMA_0056BMA_0053BMA_2451BMA_1888BMA_1889BMA_2911BMA_0158BMA_0159BMA_0058
BCEN331272 BCEN2424_2297BCEN2424_2891BCEN2424_2888BCEN2424_0656BCEN2424_2298BCEN2424_2299BCEN2424_0286BCEN2424_3114BCEN2424_3113BCEN2424_2893
BCEN331271 BCEN_1685BCEN_2276BCEN_2273BCEN_0173BCEN_1686BCEN_1687BCEN_2820BCEN_2500BCEN_2499BCEN_2278
BBRO257310 BB1868BB0170BB0171BB3379BB1867BB1866BB4512BB4525BB4526BB0168
BAMB398577 BAMMC406_2214BAMMC406_2803BAMMC406_2800BAMMC406_0577BAMMC406_2215BAMMC406_2216BAMMC406_0214BAMMC406_3052BAMMC406_3051BAMMC406_2805
BAMB339670 BAMB_2335BAMB_2941BAMB_2938BAMB_0551BAMB_2336BAMB_2337BAMB_0200BAMB_3169BAMB_3168BAMB_2943
ASP76114 EBA3972EBD70EBA3048EBA4383EBA3971EBA3968EBA3043EBA3041EBA3040EBA3044
ASP62928 AZO3607AZO0182AZO0183AZO3217AZO3608AZO3609AZO0179AZO0178AZO0177AZO0180
ASAL382245 ASA_1065ASA_1069ASA_1057ASA_1056ASA_1066ASA_1064ASA_1063ASA_1067ASA_1059ASA_1061ASA_1062ASA_1058
APLE434271 APJL_1628APJL_1627APJL_0886APJL_1634APJL_1633APJL_0885APJL_1630APJL_1631APJL_1632APJL_1629
APLE416269 APL_1595APL_1594APL_0874APL_1601APL_1600APL_0873APL_1597APL_1598APL_1599APL_1596
AHYD196024 AHA_3251AHA_3246AHA_3260AHA_3261AHA_3250AHA_3252AHA_3253AHA_3248AHA_3258AHA_3255AHA_3254AHA_3259
AFER243159 AFE_0161AFE_0533AFE_2580AFE_0160AFE_0159AFE_2579AFE_0189AFE_0536AFE_0537AFE_0535
AEHR187272 MLG_0404MLG_0399MLG_0179MLG_0402MLG_0405MLG_0406MLG_0175MLG_0173MLG_0172MLG_0176
ABAU360910 BAV2210BAV0137BAV0138BAV2494BAV2211BAV2212BAV3159BAV3172BAV3173BAV0135


Organism features enriched in list (features available for 125 out of the 131 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.002334335112
Disease:Bubonic_plague 0.000088366
Disease:Dysentery 0.000088366
Disease:Gastroenteritis 0.00002241013
Disease:Glanders_and_pneumonia 0.009671033
Disease:chronic_bronchitis 0.009671033
Endospores:No 0.000039327211
GC_Content_Range4:0-40 5.033e-179213
GC_Content_Range4:40-60 5.707e-1383224
GC_Content_Range7:30-40 6.861e-119166
GC_Content_Range7:40-50 0.001384537117
GC_Content_Range7:50-60 1.104e-846107
Genome_Size_Range5:0-2 3.060e-144155
Genome_Size_Range5:2-4 4.035e-622197
Genome_Size_Range5:4-6 7.072e-2184184
Genome_Size_Range9:1-2 7.981e-114128
Genome_Size_Range9:2-3 0.000424813120
Genome_Size_Range9:3-4 0.0087347977
Genome_Size_Range9:4-5 8.776e-94396
Genome_Size_Range9:5-6 5.151e-94188
Gram_Stain:Gram_Neg 8.046e-23116333
Motility:No 3.414e-99151
Motility:Yes 2.607e-1088267
Optimal_temp.:35-37 0.0015319813
Oxygen_Req:Aerobic 0.001795927185
Oxygen_Req:Anaerobic 7.536e-84102
Oxygen_Req:Facultative 1.039e-1683201
Pathogenic_in:Animal 0.00657562266
Pathogenic_in:Human 0.001003460213
Pathogenic_in:No 0.000017729226
Shape:Coccus 1.612e-7282
Shape:Rod 4.723e-14109347
Shape:Spiral 0.0020769134
Temp._range:Mesophilic 0.0082890110473
Temp._range:Psychrophilic 0.003702769
Temp._range:Thermophilic 0.0016551135



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ORGANISMS CONTAINING AT MOST 2 GENES FROM THE GROUP:

Total number of orgs: 127
Effective number of orgs (counting one per cluster within 468 clusters): 101

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 102
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/272
TWHI203267 ncbi Tropheryma whipplei Twist2
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSUI391296 ncbi Streptococcus suis 98HAH332
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153052
SPYO370552 ncbi Streptococcus pyogenes MGAS102702
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-62
SMAR399550 ncbi Staphylothermus marinus F10
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122282
SEPI176279 ncbi Staphylococcus epidermidis RP62A2
SCO ncbi Streptomyces coelicolor A3(2)1
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83252
SAUR426430 ncbi Staphylococcus aureus aureus Newman2
SAUR418127 ncbi Staphylococcus aureus aureus Mu32
SAUR367830 Staphylococcus aureus aureus USA3002
SAUR359787 ncbi Staphylococcus aureus aureus JH12
SAUR359786 ncbi Staphylococcus aureus aureus JH92
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4762
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2522
SAUR273036 ncbi Staphylococcus aureus RF1222
SAUR196620 ncbi Staphylococcus aureus aureus MW22
SAUR158879 ncbi Staphylococcus aureus aureus N3152
SAUR158878 ncbi Staphylococcus aureus aureus Mu502
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332092
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97901
PSP117 Pirellula sp.2
PMOB403833 ncbi Petrotoga mobilis SJ952
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PABY272844 ncbi Pyrococcus abyssi GE50
NSEN222891 ncbi Neorickettsia sennetsu Miyayama2
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 532
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS2
MSP164757 ncbi Mycobacterium sp. JLS2
MSP164756 ncbi Mycobacterium sp. MCS2
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-22
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN2
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
KRAD266940 ncbi Kineococcus radiotolerans SRS302162
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas2
ECAN269484 ncbi Ehrlichia canis Jake2
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRAD243230 ncbi Deinococcus radiodurans R12
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CNOV386415 ncbi Clostridium novyi NT2
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130322
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3142
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131292
CCAV227941 ncbi Chlamydophila caviae GPIC1
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)2
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40182
AAUR290340 ncbi Arthrobacter aurescens TC12


Names of the homologs of the genes in the group in each of these orgs
  G6350   EG12851   EG11592   EG11591   EG11412   EG11255   EG11254   EG10855   EG10854   EG10607   EG10606   EG10201   
UURE95667 UU469
UURE95664 UUR10_0526UUR10_0171
UPAR505682
UMET351160
TWHI218496 TW0277TW0283
TWHI203267 TW469TW463
TVOL273116
TPEN368408
TKOD69014
TACI273075
STOK273063
SSUI391296 SSU98_0360SSU98_0365
SSOL273057
SSAP342451 SSP1166SSP0026
SPYO370552 MGAS10270_SPY0260MGAS10270_SPY0262
SPNE487214 SPH_1856SPH_1853
SMAR399550
SEPI176280 SE_1280SE_0023
SEPI176279 SERP1161SERP2529
SCO SCO2579
SAUR93062 SACOL1650
SAUR93061 SAOUHSC_01697SAOUHSC_00027
SAUR426430 NWMN_1496NWMN_0023
SAUR418127 SAHV_1581SAHV_0024
SAUR367830 SAUSA300_1553SAUSA300_0026
SAUR359787 SAURJH1_1686SAURJH1_0024
SAUR359786 SAURJH9_1651SAURJH9_0024
SAUR282459 SAS1531SAS0024
SAUR282458 SAR1671SAR0024
SAUR273036 SAB1466CSAB0024
SAUR196620 MW1545MW0024
SAUR158879 SA1422SA0023
SAUR158878 SAV1594SAV0024
SACI330779
RSAL288705 RSAL33209_3243RSAL33209_2442
RALB246199 GRAORF_4034
PTOR263820 PTO1260
PSP117 RB8455RB5749
PMOB403833 PMOB_1028PMOB_1422
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102 PARS_1183
PAER178306 PAE2651
PABY272844
NSEN222891 NSE_0100NSE_0919
NPHA348780
MTHE349307 MTHE_1412
MTHE187420
MSYN262723 MS53_0319MS53_0516
MSTA339860
MSP189918 MKMS_3603MKMS_3377
MSP164757 MJLS_3535MJLS_3326
MSP164756 MMCS_3530MMCS_3315
MSED399549
MPUL272635 MYPU_3350
MPNE272634
MPEN272633 MYPE5200MYPE5180
MMYC272632 MSC_0424
MMOB267748 MMOB2760
MMAZ192952
MMAR444158 MMARC6_1622
MMAR426368 MMARC7_0291
MMAR402880 MMARC5_0556
MMAR368407
MMAR267377 MMP1037
MLEP272631 ML1454ML0859
MLAB410358 MLAB_0677
MKAN190192
MJAN243232
MHYO295358 MHP474
MHYO262722
MHYO262719
MHUN323259 MHUN_2595
MGEN243273
MFLO265311 MFL373
MCAP340047 MCAP_0548
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
KRAD266940 KRAD_3450KRAD_3284
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMAR272569
HBUT415426
ERUM302409 ERGA_CDS_06580
ERUM254945 ERWE_CDS_06670
ECHA205920 ECH_0371ECH_1067
ECAN269484 ECAJ_0640ECAJ_0859
DSP255470 CBDBA3
DSP216389 DEHABAV1_0003
DRAD243230 DR_0764DR_0619
DETH243164 DET_0003
CTRA471473 CTLON_0138
CTRA471472 CTL0138
CSUL444179 SMGWSS_001
CPRO264201 PC1239
CPNE182082 CPB0947
CPNE138677 CPJ0915
CPNE115713 CPN0915
CPNE115711 CP_0951
CNOV386415 NT01CX_0075NT01CX_0953
CMUR243161 TC_0150
CMET456442 MBOO_2340
CMAQ397948
CKOR374847
CGLU196627 CG2584CG2422
CFEL264202 CF0162
CEFF196164 CE2257CE2099
CDIP257309 DIP1775DIP1640
CCAV227941 CCA_00854
CABO218497 CAB819
BXEN266265
BAPH372461 BCC_307BCC_169
AYEL322098
AURANTIMONAS
APER272557
ALAI441768 ACL_0212
AFUL224325
ABUT367737 ABU_0976ABU_0996
AAUR290340 AAUR_2361AAUR_1748


Organism features enriched in list (features available for 120 out of the 127 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0005961892
Arrangment:Clusters 2.193e-91517
Disease:Pharyngitis 2.664e-688
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 1.926e-81111
Disease:bronchitis_and_pneumonitis 2.664e-688
Endospores:No 1.008e-1683211
Endospores:Yes 0.0002985253
GC_Content_Range4:0-40 0.000265560213
GC_Content_Range4:60-100 0.000296516145
GC_Content_Range7:0-30 0.00006162147
GC_Content_Range7:60-70 0.000263214134
Genome_Size_Range5:0-2 4.435e-1263155
Genome_Size_Range5:4-6 4.237e-138184
Genome_Size_Range5:6-10 0.0044333347
Genome_Size_Range9:0-1 1.225e-81927
Genome_Size_Range9:1-2 0.000014544128
Genome_Size_Range9:2-3 0.001016437120
Genome_Size_Range9:4-5 8.521e-7496
Genome_Size_Range9:5-6 5.154e-6488
Genome_Size_Range9:6-8 0.0012121138
Gram_Stain:Gram_Neg 2.900e-1235333
Habitat:Multiple 8.131e-716178
Habitat:Specialized 0.00015192253
Motility:No 3.683e-651151
Motility:Yes 0.000080637267
Optimal_temp.:- 0.000014433257
Optimal_temp.:100 0.008547633
Optimal_temp.:30-37 1.744e-71418
Optimal_temp.:35-40 0.008547633
Optimal_temp.:85 0.001724344
Oxygen_Req:Aerobic 0.000018420185
Oxygen_Req:Anaerobic 0.000060136102
Pathogenic_in:Ruminant 0.008547633
Pathogenic_in:Swine 0.006894045
Salinity:Extreme_halophilic 0.004652857
Shape:Coccus 5.479e-63382
Shape:Irregular_coccus 8.233e-131717
Shape:Pleomorphic 0.001238668
Shape:Rod 6.358e-1534347
Shape:Sphere 2.365e-91619
Shape:Spiral 0.0028905134
Temp._range:Hyperthermophilic 2.475e-81723
Temp._range:Mesophilic 0.000149783473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 6
Effective number of orgs (counting one per cluster within 468 clusters): 6

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
SDEG203122 ncbi Saccharophagus degradans 2-40 0.0021507167112
NMUL323848 ncbi Nitrosospira multiformis ATCC 25196 0.0062311137911
HHAL349124 ncbi Halorhodospira halophila SL1 0.0062796138011
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-111 0.0065739105310
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC125 0.0079138186212
MAQU351348 ncbi Marinobacter aquaeolei VT8 0.0097151189412


Names of the homologs of the genes in the group in each of these orgs
  G6350   EG12851   EG11592   EG11591   EG11412   EG11255   EG11254   EG10855   EG10854   EG10607   EG10606   EG10201   
SDEG203122 SDE_3344SDE_0534SDE_3336SDE_3335SDE_3310SDE_3343SDE_3342SDE_3309SDE_3338SDE_3340SDE_3341SDE_3337
NMUL323848 NMUL_A0360NMUL_A1989NMUL_A1988NMUL_A0513NMUL_A0361NMUL_A0362NMUL_A0512NMUL_A0315NMUL_A0316NMUL_A0317NMUL_A1991
HHAL349124 HHAL_2141HHAL_2146HHAL_1014HHAL_1015HHAL_2143HHAL_2140HHAL_2139HHAL_1011HHAL_1009HHAL_1008HHAL_1012
CBUR434922 COXBU7E912_1509COXBU7E912_1346COXBU7E912_1350COXBU7E912_1508COXBU7E912_1511COXBU7E912_1512COXBU7E912_1060COXBU7E912_1514COXBU7E912_1513COXBU7E912_1345
PHAL326442 PSHAA1028PSHAA1032PSHAA1021PSHAA1020PSHAA1029PSHAA1027PSHAA1026PSHAA1030PSHAA1023PSHAA1024PSHAA1025PSHAA1022
MAQU351348 MAQU_2416MAQU_2743MAQU_2409MAQU_2408MAQU_2746MAQU_2415MAQU_2414MAQU_2745MAQU_2411MAQU_2412MAQU_2413MAQU_2410


Organism features enriched in list (features available for 6 out of the 6 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181270.6703
AST-PWY (arginine degradation II (AST pathway))120880.6269
GLYCOCAT-PWY (glycogen degradation I)2461200.5502
GALACTITOLCAT-PWY (galactitol degradation)73600.5468
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911040.5454
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176990.5424
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81620.5267
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951020.5181
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001270.5039
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50450.5000
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901220.4819
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911220.4801
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961230.4792
PWY-5918 (heme biosynthesis I)2721170.4750
PWY-1269 (CMP-KDO biosynthesis I)3251280.4704
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861190.4653
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251040.4649
PWY-5913 (TCA cycle variation IV)3011220.4628
PWY-5386 (methylglyoxal degradation I)3051220.4560
GLUCARDEG-PWY (D-glucarate degradation I)152800.4406
GLUCONSUPER-PWY (D-gluconate degradation)2291020.4399
PWY-4041 (γ-glutamyl cycle)2791140.4383
PWY-5148 (acyl-CoA hydrolysis)2271010.4360
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481280.4349
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91580.4335
PWY-6196 (serine racemization)102620.4317
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491060.4314
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491060.4314
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149780.4309
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391250.4248
DAPLYSINESYN-PWY (lysine biosynthesis I)3421250.4202
LIPASYN-PWY (phospholipases)212950.4192
PWY0-1182 (trehalose degradation II (trehalase))70480.4151
PWY0-901 (selenocysteine biosynthesis I (bacteria))230990.4133
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183860.4110
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4038



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12851   EG11592   EG11591   EG11412   EG11255   EG11254   EG10855   EG10854   EG10607   EG10606   EG10201   
G63500.9990140.9986820.9988680.9994910.999960.9996280.9992530.9990810.9993110.9992540.998986
EG128510.9987760.9987670.9992450.9990530.9990420.9992420.9988320.9988870.9986560.998789
EG115920.9997860.9986560.9990690.9991170.9987890.9994580.9994460.9993660.999733
EG115910.9989090.9988990.9989650.9987630.9994340.9993970.9993390.999725
EG114120.9993740.9992830.9996080.9990410.9991250.9990250.999
EG112550.9999270.999170.9991350.9993790.9993280.999072
EG112540.9991210.9991970.9992920.9993110.998992
EG108550.9988960.9990350.9988680.99882
EG108540.9996710.9996160.999794
EG106070.9999350.999549
EG106060.999432
EG10201



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PAIRWISE BLAST SCORES:

  G6350   EG12851   EG11592   EG11591   EG11412   EG11255   EG11254   EG10855   EG10854   EG10607   EG10606   EG10201   
G63500.0f0-----------
EG12851-0.0f0----------
EG11592--0.0f0---------
EG11591---0.0f0--------
EG11412----0.0f0-------
EG11255-----0.0f0------
EG11254------0.0f0-----
EG10855-------0.0f0----
EG10854--------0.0f0---
EG10607---------0.0f0--
EG10606----------0.0f0-
EG10201-----------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10201 EG10606 EG10607 EG10854 EG10855 EG11254 EG11255 EG11412 EG11591 EG11592 EG12851 G6350 (centered at EG11254)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6350   EG12851   EG11592   EG11591   EG11412   EG11255   EG11254   EG10855   EG10854   EG10607   EG10606   EG10201   
400/62373/623148/623382/623193/623406/623403/623101/623310/623351/623363/623298/623
AAEO224324:0:Tyes8----887--9630824-
AAUR290340:2:Tyes597--0--------
AAVE397945:0:Tyes--6766417928582857-3693540035
ABAC204669:0:Tyes0--4321-13-259214561455-
ABAU360910:0:Tyes2078-23236720792080-3032304530460
ABOR393595:0:Tyes3--14045-97610
ABUT367737:0:Tyes--------0-20-
ACAU438753:0:Tyes---676-19871986-0--1
ACEL351607:0:Tyes11--176-----10-
ACRY349163:8:Tyes---2045--1299-7224084070
ADEH290397:0:Tyes2214--1624-020-379623032304-
AEHR187272:0:Tyes231226-7229232233-3104
AFER243159:0:Tyes2--369238210238129372373371
AHYD196024:0:Tyes5014154672129813
ALAI441768:0:Tyes------0-----
AMAR234826:0:Tyes---682-708--4230859783
AMAR329726:9:Tyes---2628----010072975-
AMET293826:0:Tyes921--3041-9253361--0--
ANAE240017:0:Tyes0--389-2------
AORE350688:0:Tyes0-----1100--35214-
APHA212042:0:Tyes---33-0-----946
APLE416269:0:Tyes--75375217597580755756757754
APLE434271:0:Tno--78077917867850782783784781
ASAL382245:5:Tyes81210976103452
ASP1667:3:Tyes775--0-773------
ASP232721:2:Tyes--5857358616091610-3753308030
ASP62928:0:Tyes3491-56309634923493-2103
ASP62977:0:Tyes--169116921856183110-109310910121
ASP76114:2:Tyes545-56787544543-2103
AVAR240292:3:Tyes1359--2928----036291344-
BABO262698:0:Tno---0--------
BABO262698:1:Tno-----806805-0--1
BAFZ390236:2:Fyes70-------17-0-
BAMB339670:3:Tno2204-2816281337122052206-0304430432818
BAMB398577:3:Tno2038-2631262837620392040-0287928782633
BAMY326423:0:Tyes1955----19533275--106901720
BANT260799:0:Tno2131----21293230--166501888
BANT261594:2:Tno2138----21363214--164901889
BANT568206:2:Tyes3930----39285049--017663676
BANT592021:2:Tno2254----22523376--176102000
BAPH198804:0:Tyes167-2100166-------
BAPH372461:0:Tyes--1350--------
BBAC264462:0:Tyes2850--0-----15671566-
BBAC360095:0:Tyes---543-01-471---
BBRO257310:0:Tyes1718-23323117171716-4387440044010
BBUR224326:21:Fno65-------17-0-
BCAN483179:0:Tno---0--------
BCAN483179:1:Tno-----838--0--1
BCEN331271:2:Tno1535-21302127015361537-2684235223512132
BCEN331272:3:Tyes2008-2599259636920092010-0282228212601
BCER226900:1:Tyes2085----20833187--167401836
BCER288681:0:Tno2044----20423139--163801798
BCER315749:1:Tyes1334----13322230--84501057
BCER405917:1:Tyes2025----20233171--158801766
BCER572264:1:Tno2094----20923221--167401843
BCIC186490:0:Tyes1--40----32-
BCLA66692:0:Tyes0----22464--721-157
BFRA272559:1:Tyes2741--1322-0656--31463147-
BFRA295405:0:Tno2970--1267-0700--33723373-
BGAR290434:2:Fyes66-------17-0-
BHAL272558:0:Tyes0----22700--12442082213
BHEN283166:0:Tyes---593-01-648--649
BHER314723:0:Fyes67-------18-0-
BJAP224911:0:Fyes---4860-01-4116--4114
BLIC279010:0:Tyes2048----20463558--08321798
BLON206672:0:Tyes64----0294-----
BMAL243160:1:Tno1633-30214716341635-25681001015
BMAL320388:1:Tno840-30149839838-3108251525145
BMAL320389:1:Tyes2-27752772223510-2560196819692777
BMEL224914:0:Tno---0--------
BMEL224914:1:Tno-----01-800--799
BMEL359391:0:Tno---0--------
BMEL359391:1:Tno-----778777-0--1
BOVI236:0:Tyes---0--------
BOVI236:1:Tyes-----728727-0--1
BPAR257311:0:Tno2160-23149521592158-3712372437250
BPER257313:0:Tyes1970-23172719711972-5222462450
BPET94624:0:Tyes2693-44234422292526942695-12102919
BPSE272560:1:Tyes980-2272302769979978-311201225
BPSE320372:1:Tno1399-612614354813981397-0333334610
BPSE320373:1:Tno1035--271313310341033-352301267
BPUM315750:0:Tyes873----8712253--0-654
BQUI283165:0:Tyes---40----1--0
BSP107806:2:Tyes175-2170174-------
BSP36773:2:Tyes2285-2900289736422862287-0313131302902
BSP376:0:Tyes---2687-10-3217--3221
BSUB:0:Tyes2276----22743799--118902052
BSUI204722:0:Tyes---0--------
BSUI204722:1:Tyes824----823822-0--1
BSUI470137:0:Tno---0-694------
BSUI470137:1:Tno--------0--1
BTHA271848:1:Tno867-2402431061866865-294601238
BTHE226186:0:Tyes942--0-2977483--27782777-
BTHU281309:1:Tno2035----20333098--162201784
BTHU412694:1:Tno1829----18272842--146101609
BTRI382640:1:Tyes---1161-01-874--875
BTUR314724:0:Fyes66-------18-0-
BVIE269482:7:Tyes2119-2716271337421202121-0292729262718
BWEI315730:4:Tyes2057----20553136--161901786
CABO218497:0:Tyes-----0------
CACE272562:1:Tyes14-----2291--30803
CAULO:0:Tyes---635-19091910-27810-
CBEI290402:0:Tyes0-----4464--105613701344
CBLO203907:0:Tyes----32-4-01-
CBLO291272:0:Tno----32-4-01-
CBOT36826:1:Tno2343-----2921--0-1214
CBOT441770:0:Tyes2311-----2892--0-1122
CBOT441771:0:Tno1228-----1811--0-176
CBOT441772:1:Tno2288-----2951--0-1143
CBOT498213:1:Tno2364-----2955--0-1153
CBOT508765:1:Tyes0-----2900--1841341766
CBOT515621:2:Tyes2505-----3100--0-1316
CBOT536232:0:Tno2570-----3189--0-1249
CBUR227377:1:Tyes6-67768072--41501676
CBUR360115:1:Tno6-68869272--26801687
CBUR434922:2:Tno431-273277430433434-0436435272
CCAV227941:1:Tyes-----0------
CCHL340177:0:Tyes-----0--16084881084-
CCON360104:2:Tyes--------71880-
CCUR360105:0:Tyes--------13021-
CDES477974:0:Tyes644----642---2352390
CDIF272563:1:Tyes1394----13922531--0-141
CDIP257309:0:Tyes134--0--------
CEFF196164:0:Fyes161--0--------
CFEL264202:1:Tyes-----0------
CFET360106:0:Tyes--------8390-
CGLU196627:0:Tyes153--0--------
CHOM360107:1:Tyes--------09698-
CHUT269798:0:Tyes131--0-1452285-1732-2793-
CHYD246194:0:Tyes320----3230--2912781855
CJAP155077:0:Tyes319-32832903203211325323322326
CJEI306537:0:Tyes0--146-1------
CJEJ192222:0:Tyes--------06156-
CJEJ195099:0:Tno--------06436-
CJEJ354242:2:Tyes--------06066-
CJEJ360109:0:Tyes--------8580852-
CJEJ407148:0:Tno--------06376-
CKLU431943:1:Tyes10--1385--1439--01843371
CMET456442:0:Tyes------0-----
CMIC31964:2:Tyes2--68-0------
CMIC443906:2:Tyes293--0-295------
CMUR243161:1:Tyes-----0------
CNOV386415:0:Tyes1534-----0-----
CPEL335992:0:Tyes---870-0---11551156778
CPER195102:1:Tyes325-----864--336-0
CPER195103:0:Tno313-----801--324-0
CPER289380:3:Tyes311-----772--52-0
CPHY357809:0:Tyes1617-----0---1443-
CPNE115711:1:Tyes-----0------
CPNE115713:0:Tno-----0------
CPNE138677:0:Tno-----0------
CPNE182082:0:Tno-----0------
CPRO264201:0:Fyes-----0------
CPSY167879:0:Tyes813101076113452
CRUT413404:0:Tyes181--3800180---313612312
CSAL290398:0:Tyes0-8981812-6437
CSP501479:6:Fyes-----210211--10-
CSP501479:8:Fyes---0-------1991
CSP78:2:Tyes---1685-32603261-121102731669
CSUL444179:0:Tyes---0--------
CTEP194439:0:Tyes0----124--2033273544-
CTET212717:0:Tyes1740-----0--175117541265
CTRA471472:0:Tyes-----0------
CTRA471473:0:Tno-----0------
CVES412965:0:Tyes164--3460----283565282
CVIO243365:0:Tyes12-2648264901110-3989396639652647
DARO159087:0:Tyes58-1811804405960-012183
DDES207559:0:Tyes1130--2233-12571803-0480481-
DETH243164:0:Tyes0-----------
DGEO319795:1:Tyes---651--551-0---
DHAF138119:0:Tyes860----8582720--8718750
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