CANDIDATE ID: 78

CANDIDATE ID: 78

NUMBER OF GENES: 12
AVERAGE SCORE:    9.9919788e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12851 (ybeL) (b0643)
   Products of gene:
     - EG12851-MONOMER (conserved protein)

- EG11592 (ybeD) (b0631)
   Products of gene:
     - EG11592-MONOMER (conserved protein)

- EG11591 (lipB) (b0630)
   Products of gene:
     - EG11591-MONOMER (lipoyl-protein ligase)
       Reactions:
        an apo-GcvH protein + a lipoyl-[acp]  =  H-Gcv-protein-(lipoyl)lysine + a holo-[acp]
        SucB + lipoyl-ACP  =  SucB-lipoate + a holo-[acp]
        lipoate acetyltransferase / dihydrolipoamide acetyltransferase + lipoyl-ACP  =  AceF-lipoate + a holo-[acp]
        an octanoyl-[acp] + a non-lipoylated protein-lipoyl domain  ->  an octanoylated protein lipoyl-domain + a holo-[acp]
         In pathways
         PWY0-501 (lipoate biosynthesis and incorporation I)

- EG11412 (holA) (b0640)
   Products of gene:
     - EG11412-MONOMER (DNA polymerase III, δ subunit)
     - CPLX0-3801 (DNA polymerase III, preinitiation complex)
     - CPLX0-3803 (DNA polymerase III, holoenzyme)

- EG11306 (lipA) (b0628)
   Products of gene:
     - EG11306-MONOMER (lipoate synthase monomer)
     - CPLX0-782 (lipoate synthase)
       Reactions:
        an octanoylated protein lipoyl-domain + 2 S-adenosyl-L-methionine + 2 S2-  ->  a lipoylated protein lipoyl-domain + 2 5'-deoxyadenosine + 2 L-methionine
         In pathways
         PWY0-1275 (lipoate biosynthesis and incorporation II)
         PWY0-501 (lipoate biosynthesis and incorporation I)

- EG11255 (ybeB) (b0637)
   Products of gene:
     - EG11255-MONOMER (predicted protein)

- EG11254 (rlmH) (b0636)
   Products of gene:
     - EG11254-MONOMER (23S rRNA m3Ψ1915 methyltransferase)
     - CPLX0-7423 (23S rRNA m3Ψ1915 methyltransferase)
       Reactions:
        S-adenosyl-L-methionine + pseudouridine1915 in 23S rRNA  =  S-adenosyl-L-homocysteine + N3-methylpseudouridine1915 in 23S rRNA

- EG10855 (lptE) (b0641)
   Products of gene:
     - EG10855-MONOMER (rare lipoprotein LptE)
     - CPLX0-7628 (outer membrane LPS assembly complex)

- EG10854 (rlpA) (b0633)
   Products of gene:
     - EG10854-MONOMER (rare lipoprotein RlpA)

- EG10607 (mrdB) (b0634)
   Products of gene:
     - EG10607-MONOMER (rod shape-determining membrane protein; sensitivity to radiation and drugs)

- EG10606 (mrdA) (b0635)
   Products of gene:
     - EG10606-MONOMER (cell shape; peptidoglycan synthetase; penicillin-binding protein 2)
       Reactions:
        peptidoglycan D-alanyl-DAP crosslink + H2O  =  peptidoglycan tetrapeptide, glycan chain 2 + peptidoglycan tetrapeptide, glycan chain 1

- EG10201 (dacA) (b0632)
   Products of gene:
     - EG10201-MONOMER (D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5)
       Reactions:
        a beta-lactam + H2O  ->  a substituted beta-amino acid
        a lipid II + H2O  =  a N-acetylglucosamine--N-acetylmuramyl-(tetrapeptide) pyrophosphoryl-undecaprenol + D-alanine



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ORGANISMS CONTAINING AT LEAST 10 GENES FROM THE GROUP:

Total number of orgs: 136
Effective number of orgs (counting one per cluster within 468 clusters): 88

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175812
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295312
YPES386656 ncbi Yersinia pestis Pestoides F12
YPES377628 ncbi Yersinia pestis Nepal51612
YPES360102 ncbi Yersinia pestis Antiqua12
YPES349746 ncbi Yersinia pestis Angola12
YPES214092 ncbi Yersinia pestis CO9212
YPES187410 ncbi Yersinia pestis KIM 1012
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808112
VVUL216895 ncbi Vibrio vulnificus CMCP612
VVUL196600 ncbi Vibrio vulnificus YJ01612
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 221063312
VFIS312309 ncbi Vibrio fischeri ES11412
VCHO345073 ncbi Vibrio cholerae O39512
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696112
TTUR377629 ncbi Teredinibacter turnerae T790111
TDEN292415 ncbi Thiobacillus denitrificans ATCC 2525911
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT212
SSP94122 ncbi Shewanella sp. ANA-312
SSON300269 ncbi Shigella sonnei Ss04612
SSED425104 ncbi Shewanella sediminis HAW-EB312
SPRO399741 ncbi Serratia proteamaculans 56812
SPEA398579 ncbi Shewanella pealeana ATCC 70034512
SONE211586 ncbi Shewanella oneidensis MR-112
SLOI323850 ncbi Shewanella loihica PV-412
SHIGELLA ncbi Shigella flexneri 2a str. 2457T12
SHAL458817 ncbi Shewanella halifaxensis HAW-EB412
SGLO343509 ncbi Sodalis glossinidius morsitans11
SFLE373384 ncbi Shigella flexneri 5 str. 840112
SFLE198214 ncbi Shigella flexneri 2a str. 30112
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47612
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6712
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915012
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1812
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty212
SDYS300267 ncbi Shigella dysenteriae Sd19712
SDEN318161 ncbi Shewanella denitrificans OS21712
SDEG203122 ncbi Saccharophagus degradans 2-4012
SBOY300268 ncbi Shigella boydii Sb22712
SBAL402882 ncbi Shewanella baltica OS18512
SBAL399599 ncbi Shewanella baltica OS19512
RSOL267608 ncbi Ralstonia solanacearum GMI100010
RMET266264 ncbi Ralstonia metallidurans CH3410
REUT381666 ncbi Ralstonia eutropha H1610
REUT264198 ncbi Ralstonia eutropha JMP13410
PSTU379731 ncbi Pseudomonas stutzeri A150110
PSP296591 ncbi Polaromonas sp. JS66610
PPRO298386 ncbi Photobacterium profundum SS912
PNAP365044 ncbi Polaromonas naphthalenivorans CJ210
PMUL272843 ncbi Pasteurella multocida multocida Pm7011
PMEN399739 ncbi Pseudomonas mendocina ymp10
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO111
PING357804 ncbi Psychromonas ingrahamii 3711
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC12512
PATL342610 ncbi Pseudoalteromonas atlantica T6c11
PAER208964 ncbi Pseudomonas aeruginosa PAO110
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA1410
NMUL323848 ncbi Nitrosospira multiformis ATCC 2519611
NEUT335283 ncbi Nitrosomonas eutropha C9110
NEUR228410 ncbi Nitrosomonas europaea ATCC 1971810
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E11
MSP400668 ncbi Marinomonas sp. MWYL110
MFLA265072 ncbi Methylobacillus flagellatus KT10
MCAP243233 ncbi Methylococcus capsulatus Bath11
MAQU351348 ncbi Marinobacter aquaeolei VT812
LPNE297245 ncbi Legionella pneumophila Lens10
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 110
LCHO395495 ncbi Leptothrix cholodnii SP-610
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857812
JSP375286 ncbi Janthinobacterium sp. Marseille10
ILOI283942 ncbi Idiomarina loihiensis L2TR11
HSOM228400 ncbi Haemophilus somnus 233610
HSOM205914 ncbi Haemophilus somnus 129PT11
HINF71421 ncbi Haemophilus influenzae Rd KW2011
HINF374930 ncbi Haemophilus influenzae PittEE11
HINF281310 ncbi Haemophilus influenzae 86-028NP11
HHAL349124 ncbi Halorhodospira halophila SL111
HDUC233412 ncbi Haemophilus ducreyi 35000HP11
HCHE349521 ncbi Hahella chejuensis KCTC 239610
HARS204773 ncbi Herminiimonas arsenicoxydans10
ESP42895 Enterobacter sp.12
EFER585054 ncbi Escherichia fergusonii ATCC 3546912
ECOO157 ncbi Escherichia coli O157:H7 EDL93312
ECOL83334 Escherichia coli O157:H712
ECOL585397 ncbi Escherichia coli ED1a12
ECOL585057 ncbi Escherichia coli IAI3912
ECOL585056 ncbi Escherichia coli UMN02612
ECOL585055 ncbi Escherichia coli 5598912
ECOL585035 ncbi Escherichia coli S8812
ECOL585034 ncbi Escherichia coli IAI112
ECOL481805 ncbi Escherichia coli ATCC 873912
ECOL469008 ncbi Escherichia coli BL21(DE3)12
ECOL439855 ncbi Escherichia coli SMS-3-512
ECOL413997 ncbi Escherichia coli B str. REL60612
ECOL409438 ncbi Escherichia coli SE1112
ECOL405955 ncbi Escherichia coli APEC O111
ECOL364106 ncbi Escherichia coli UTI8912
ECOL362663 ncbi Escherichia coli 53612
ECOL331111 ncbi Escherichia coli E24377A12
ECOL316407 ncbi Escherichia coli K-12 substr. W311012
ECOL199310 ncbi Escherichia coli CFT07312
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104312
DARO159087 ncbi Dechloromonas aromatica RCB10
CVIO243365 ncbi Chromobacterium violaceum ATCC 1247210
CSAL290398 ncbi Chromohalobacter salexigens DSM 304310
CPSY167879 ncbi Colwellia psychrerythraea 34H12
CJAP155077 Cellvibrio japonicus11
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-11110
BVIE269482 ncbi Burkholderia vietnamiensis G410
BTHA271848 ncbi Burkholderia thailandensis E26410
BSP36773 Burkholderia sp.10
BPSE320372 ncbi Burkholderia pseudomallei 1710b10
BPSE272560 ncbi Burkholderia pseudomallei K9624310
BPET94624 Bordetella petrii10
BPER257313 ncbi Bordetella pertussis Tohama I10
BPAR257311 ncbi Bordetella parapertussis 1282210
BMAL320389 ncbi Burkholderia mallei NCTC 1024710
BMAL320388 ncbi Burkholderia mallei SAVP110
BMAL243160 ncbi Burkholderia mallei ATCC 2334410
BCEN331272 ncbi Burkholderia cenocepacia HI242410
BCEN331271 ncbi Burkholderia cenocepacia AU 105410
BBRO257310 ncbi Bordetella bronchiseptica RB5010
BAMB398577 ncbi Burkholderia ambifaria MC40-610
BAMB339670 ncbi Burkholderia ambifaria AMMD10
ASP76114 ncbi Aromatoleum aromaticum EbN110
ASP62977 ncbi Acinetobacter sp. ADP110
ASP62928 ncbi Azoarcus sp. BH7210
ASP232721 ncbi Acidovorax sp. JS4210
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44912
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL0311
APLE416269 ncbi Actinobacillus pleuropneumoniae L2011
AHYD196024 Aeromonas hydrophila dhakensis12
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 2327010
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-110
ABAU360910 ncbi Bordetella avium 197N10
AAVE397945 ncbi Acidovorax citrulli AAC00-110


Names of the homologs of the genes in the group in each of these orgs
  EG12851   EG11592   EG11591   EG11412   EG11306   EG11255   EG11254   EG10855   EG10854   EG10607   EG10606   EG10201   
YPSE349747 YPSIP31758_2924YPSIP31758_2953YPSIP31758_2954YPSIP31758_2928YPSIP31758_2955YPSIP31758_2947YPSIP31758_2948YPSIP31758_2927YPSIP31758_2951YPSIP31758_2950YPSIP31758_2949YPSIP31758_2952
YPSE273123 YPTB1104YPTB1093YPTB1092YPTB1101YPTB1091YPTB1099YPTB1098YPTB1102YPTB1095YPTB1096YPTB1097YPTB1351
YPES386656 YPDSF_2642YPDSF_2653YPDSF_2654YPDSF_2645YPDSF_2655YPDSF_2647YPDSF_2648YPDSF_2644YPDSF_2651YPDSF_2650YPDSF_2649YPDSF_2652
YPES377628 YPN_1096YPN_1085YPN_1084YPN_1093YPN_1083YPN_1091YPN_1090YPN_1094YPN_1087YPN_1088YPN_1089YPN_2659
YPES360102 YPA_2486YPA_2499YPA_2500YPA_2489YPA_2501YPA_2491YPA_2492YPA_2488YPA_2495YPA_2494YPA_2493YPA_2498
YPES349746 YPANGOLA_A1840YPANGOLA_A1853YPANGOLA_A1854YPANGOLA_A1844YPANGOLA_A1855YPANGOLA_A1846YPANGOLA_A1847YPANGOLA_A1843YPANGOLA_A1851YPANGOLA_A1850YPANGOLA_A1849YPANGOLA_A1852
YPES214092 YPO2611YPO2600YPO2599YPO2608YPO2598YPO2606YPO2605YPO2609YPO2602YPO2603YPO2604YPO2601
YPES187410 Y1185Y1174Y1173Y1182Y1171Y1180Y1179Y1183Y1176Y1177Y1178Y1175
YENT393305 YE2995YE3006YE3007YE2998YE3008YE3000YE3001YE2997YE3004YE3003YE3002YE3005
VVUL216895 VV1_0271VV1_0282VV1_0283VV1_0275VV1_0284VV1_0276VV1_0277VV1_0274VV1_0280VV1_0279VV2_1370VV1_0281
VVUL196600 VV0912VV0902VV0901VV0909VV0900VV0908VV0907VV0910VV0904VV0905VV0906VV0903
VPAR223926 VP0728VP0718VP0717VP0725VP0716VP0724VP0723VP0726VP0720VP0721VP0722VP0719
VFIS312309 VF0754VF0744VF0743VF0751VF0742VF0750VF0749VF0752VF0746VF0747VF1481VF0745
VCHO345073 VC0395_A0479VC0395_A0469VC0395_A0468VC0395_A0476VC0395_A0467VC0395_A0475VC0395_A0474VC0395_A0477VC0395_A0471VC0395_A0472VC0395_A0473VC0395_A0470
VCHO VC0957VC0945VC0944VC0953VC0943VC0952VC0951VC0954VC0948VC0949VC0950VC0947
TTUR377629 TERTU_0609TERTU_0610TERTU_3887TERTU_0611TERTU_0601TERTU_0602TERTU_3886TERTU_0606TERTU_0604TERTU_0603TERTU_0608
TDEN292415 TBD_0268TBD_0269TBD_2443TBD_0274TBD_2440TBD_2439TBD_2444TBD_0265TBD_0264TBD_0263TBD_0647
STYP99287 STM0653STM0636STM0635STM0646STM0633STM0642STM0641STM0647STM0638STM0639STM1910STM0637
SSP94122 SHEWANA3_1002SHEWANA3_0990SHEWANA3_0989SHEWANA3_0999SHEWANA3_0988SHEWANA3_0997SHEWANA3_0996SHEWANA3_1000SHEWANA3_0992SHEWANA3_0994SHEWANA3_0995SHEWANA3_0991
SSON300269 SSO_0597SSO_0585SSO_0584SSO_0594SSO_0582SSO_0591SSO_0590SSO_0595SSO_0587SSO_0588SSO_0589SSO_0586
SSED425104 SSED_3478SSED_3490SSED_3491SSED_3481SSED_3492SSED_3483SSED_3484SSED_3480SSED_3488SSED_3486SSED_3485SSED_3489
SPRO399741 SPRO_1208SPRO_1197SPRO_1196SPRO_1205SPRO_1195SPRO_1203SPRO_1202SPRO_1206SPRO_1199SPRO_1200SPRO_2356SPRO_1628
SPEA398579 SPEA_3142SPEA_3154SPEA_3155SPEA_3145SPEA_3156SPEA_3147SPEA_3148SPEA_3144SPEA_3152SPEA_3150SPEA_3149SPEA_3153
SONE211586 SO_1175SO_1163SO_1162SO_1172SO_1161SO_1170SO_1169SO_1173SO_1165SO_1167SO_1168SO_1164
SLOI323850 SHEW_2928SHEW_2940SHEW_2941SHEW_2931SHEW_2942SHEW_2933SHEW_2934SHEW_2930SHEW_2938SHEW_2936SHEW_2935SHEW_2939
SHIGELLA YBELYBEDLIPBHOLALIPAYBEBYBEARLPBRLPAMRDBMRDADACA
SHAL458817 SHAL_3227SHAL_3239SHAL_3240SHAL_3230SHAL_3241SHAL_3232SHAL_3233SHAL_3229SHAL_3237SHAL_3235SHAL_3234SHAL_3238
SGLO343509 SG0804SG0794SG0793SG0801SG0792SG0799SG0798SG0802SG0796SG0797SG0795
SFLE373384 SFV_0683SFV_0695SFV_0696SFV_0686SFV_0698SFV_0689SFV_0690SFV_0685SFV_0693SFV_0692SFV_0691SFV_0694
SFLE198214 AAN42274.1AAN42286.1AAN42287.1AAN42277.1AAN42289.1AAN42280.1AAN42281.1AAN42276.1AAN42284.1AAN42283.1AAN42282.1AAN42285.1
SENT454169 SEHA_C0770SEHA_C0752SEHA_C0751SEHA_C0762SEHA_C0748SEHA_C0758SEHA_C0757SEHA_C0763SEHA_C0754SEHA_C0755SEHA_C2125SEHA_C0753
SENT321314 SCH_0682SCH_0665SCH_0664SCH_0676SCH_0662SCH_0672SCH_0671SCH_0677SCH_0668SCH_0669SCH_1917SCH_0666
SENT295319 SPA2081SPA2098SPA2099SPA2088SPA2101SPA2092SPA2093SPA2087SPA2096SPA2095SPA2094SPA2097
SENT220341 STY0704STY0687STY0686STY0697STY0683STY0693STY0692STY0698STY0689STY0690STY0691STY0688
SENT209261 T2214T2231T2232T2221T2234T2225T2226T2220T2229T2228T2227T2230
SDYS300267 SDY_0567SDY_0553SDY_0552SDY_0562SDY_0550SDY_0559SDY_0558SDY_0563SDY_0555SDY_0556SDY_0557SDY_0554
SDEN318161 SDEN_0798SDEN_0869SDEN_0868SDEN_0795SDEN_0867SDEN_0857SDEN_0856SDEN_0796SDEN_0852SDEN_0854SDEN_0855SDEN_0851
SDEG203122 SDE_0534SDE_3336SDE_3335SDE_3310SDE_3334SDE_3343SDE_3342SDE_3309SDE_3338SDE_3340SDE_3341SDE_3337
SBOY300268 SBO_0507SBO_0495SBO_0494SBO_0504SBO_0492SBO_0501SBO_0500SBO_0505SBO_0497SBO_0498SBO_0499SBO_0496
SBAL402882 SHEW185_3310SHEW185_3322SHEW185_3323SHEW185_3313SHEW185_3324SHEW185_3315SHEW185_3316SHEW185_3312SHEW185_3320SHEW185_3318SHEW185_3317SHEW185_3321
SBAL399599 SBAL195_3446SBAL195_3458SBAL195_3459SBAL195_3449SBAL195_3460SBAL195_3451SBAL195_3452SBAL195_3448SBAL195_3456SBAL195_3454SBAL195_3453SBAL195_3457
RSOL267608 RSC0326RSC0323RSC2742RSC0322RSC2194RSC2195RSC3267RSC0063RSC0062RSC0327
RMET266264 RMET_0224RMET_0060RMET_2971RMET_0061RMET_0781RMET_0780RMET_3432RMET_0055RMET_0054RMET_0225
REUT381666 H16_A0303H16_A0122H16_A3137H16_A0123H16_A0912H16_A0911H16_A3581H16_A0117H16_A0116H16_A0302
REUT264198 REUT_A0281REUT_A0085REUT_A2832REUT_A0086REUT_A2526REUT_A2527REUT_A3267REUT_A0080REUT_A0079REUT_A0280
PSTU379731 PST_3776PST_3775PST_3770PST_3774PST_3783PST_3782PST_3778PST_3780PST_3781PST_3777
PSP296591 BPRO_0316BPRO_0314BPRO_4600BPRO_0313BPRO_1972BPRO_1973BPRO_4129BPRO_1091BPRO_0225BPRO_0250
PPRO298386 PBPRA2884PBPRA2894PBPRA2895PBPRA2887PBPRA2896PBPRA2888PBPRA2889PBPRA2886PBPRA2892PBPRA2891PBPRB0070PBPRA2893
PNAP365044 PNAP_0245PNAP_0243PNAP_3769PNAP_0242PNAP_1732PNAP_1733PNAP_0492PNAP_3400PNAP_0176PNAP_0197
PMUL272843 PM1928PM1929PM1216PM1930PM1922PM1923PM1215PM1926PM1925PM1924PM1927
PMEN399739 PMEN_3793PMEN_3792PMEN_3788PMEN_3791PMEN_3800PMEN_3799PMEN_3795PMEN_3797PMEN_3798PMEN_3794
PLUM243265 PLU1293PLU1292PLU1301PLU1291PLU1299PLU1298PLU1302PLU1295PLU1296PLU1297PLU1294
PING357804 PING_3028PING_3029PING_1189PING_3030PING_1137PING_1136PING_1190PING_1133PING_1134PING_1135PING_3027
PHAL326442 PSHAA1032PSHAA1021PSHAA1020PSHAA1029PSHAA1019PSHAA1027PSHAA1026PSHAA1030PSHAA1023PSHAA1024PSHAA1025PSHAA1022
PATL342610 PATL_1555PATL_1554PATL_1564PATL_1553PATL_1562PATL_1561PATL_1565PATL_1557PATL_1559PATL_1560PATL_1556
PAER208964 PA3998PA3997PA3989PA3996PA4005PA4004PA4000PA4002PA4003PA3999
PAER208963 PA14_12110PA14_12120PA14_12200PA14_12130PA14_12030PA14_12050PA14_12090PA14_12070PA14_12060PA14_12100
NMUL323848 NMUL_A1989NMUL_A1988NMUL_A0513NMUL_A1987NMUL_A0361NMUL_A0362NMUL_A0512NMUL_A0315NMUL_A0316NMUL_A0317NMUL_A1991
NEUT335283 NEUT_0759NEUT_0758NEUT_1427NEUT_0757NEUT_1611NEUT_1612NEUT_1587NEUT_1588NEUT_1589NEUT_0761
NEUR228410 NE1487NE1488NE1137NE1489NE0358NE0357NE2065NE2066NE2067NE1485
MSUC221988 MS1828MS1827MS0332MS1826MS1834MS1833MS0337MS1830MS1831MS1832MS1829
MSP400668 MMWYL1_2842MMWYL1_2917MMWYL1_2841MMWYL1_2850MMWYL1_2849MMWYL1_2916MMWYL1_2845MMWYL1_2847MMWYL1_2848MMWYL1_2844
MFLA265072 MFLA_2499MFLA_2500MFLA_2157MFLA_2501MFLA_0593MFLA_0592MFLA_2496MFLA_2495MFLA_2494MFLA_2497
MCAP243233 MCA_0107MCA_0109MCA_1451MCA_0110MCA_2027MCA_0377MCA_1452MCA_2972MCA_0104MCA_0103MCA_0105
MAQU351348 MAQU_2743MAQU_2409MAQU_2408MAQU_2746MAQU_2373MAQU_2415MAQU_2414MAQU_2745MAQU_2411MAQU_2412MAQU_2413MAQU_2410
LPNE297245 LPL1514LPL1299LPL0781LPL1328LPL1327LPL1300LPL1518LPL1325LPL1326LPL1517
LPNE272624 LPG1511LPG1346LPG0745LPG1377LPG1376LPG1347LPG1508LPG1374LPG1375LPG1509
LCHO395495 LCHO_4239LCHO_0400LCHO_0481LCHO_0401LCHO_1949LCHO_1948LCHO_1244LCHO_0500LCHO_0501LCHO_4237
KPNE272620 GKPORF_B5099GKPORF_B5087GKPORF_B5086GKPORF_B5096GKPORF_B5084GKPORF_B5093GKPORF_B5092GKPORF_B5097GKPORF_B5089GKPORF_B5090GKPORF_B0907GKPORF_B5088
JSP375286 MMA_3250MMA_3251MMA_2898MMA_3252MMA_0540MMA_0539MMA_0201MMA_0200MMA_0199MMA_3248
ILOI283942 IL0958IL0959IL0949IL0960IL0951IL0952IL0948IL0956IL0954IL0953IL0957
HSOM228400 HSM_0188HSM_0187HSM_0469HSM_0186HSM_0195HSM_0194HSM_0468HSM_0191HSM_0192HSM_0193
HSOM205914 HS_0317HS_0316HS_1555HS_0315HS_0323HS_0322HS_1556HS_0319HS_0320HS_0321HS_0318
HINF71421 HI_0028HI_0027HI_0923HI_0026HI_0034HI_0033HI_0922HI_0030HI_0031HI_0032HI_0029
HINF374930 CGSHIEE_03170CGSHIEE_03175CGSHIEE_07400CGSHIEE_03180CGSHIEE_03140CGSHIEE_03145CGSHIEE_07405CGSHIEE_03160CGSHIEE_03155CGSHIEE_03150CGSHIEE_03165
HINF281310 NTHI0035NTHI0034NTHI1092NTHI0033NTHI0042NTHI0041NTHI1091NTHI0037NTHI0038NTHI0039NTHI0036
HHAL349124 HHAL_2146HHAL_1014HHAL_1015HHAL_2143HHAL_0116HHAL_2140HHAL_2139HHAL_1011HHAL_1009HHAL_1008HHAL_1012
HDUC233412 HD_2015HD_2013HD_1130HD_2012HD_2023HD_2022HD_1131HD_2017HD_2019HD_2020HD_2016
HCHE349521 HCH_05353HCH_05837HCH_05357HCH_05836HCH_05845HCH_05844HCH_05840HCH_05842HCH_05843HCH_05839
HARS204773 HEAR3001HEAR3002HEAR2663HEAR3003HEAR0554HEAR0553HEAR0173HEAR0172HEAR0171HEAR2999
ESP42895 ENT638_1177ENT638_1166ENT638_1165ENT638_1174ENT638_1163ENT638_1172ENT638_1171ENT638_1175ENT638_1168ENT638_1169ENT638_1170ENT638_1167
EFER585054 EFER_2463EFER_2474EFER_2475EFER_2466EFER_2476EFER_2468EFER_2469EFER_2465EFER_2472EFER_2471EFER_2470EFER_2473
ECOO157 YBELYBEDLIPBHOLALIPAYBEBYBEARLPBRLPAMRDBMRDADACA
ECOL83334 ECS0681ECS0669ECS0668ECS0678ECS0666ECS0675ECS0674ECS0679ECS0671ECS0672ECS0673ECS0670
ECOL585397 ECED1_0640ECED1_0627ECED1_0626ECED1_0637ECED1_0624ECED1_0634ECED1_0633ECED1_0638ECED1_0630ECED1_0631ECED1_0632ECED1_0628
ECOL585057 ECIAI39_0618ECIAI39_0606ECIAI39_0605ECIAI39_0615ECIAI39_0603ECIAI39_0612ECIAI39_0611ECIAI39_0616ECIAI39_0608ECIAI39_0609ECIAI39_0610ECIAI39_0607
ECOL585056 ECUMN_0737ECUMN_0724ECUMN_0723ECUMN_0734ECUMN_0720ECUMN_0731ECUMN_0730ECUMN_0735ECUMN_0727ECUMN_0728ECUMN_0729ECUMN_0725
ECOL585055 EC55989_0635EC55989_0623EC55989_0622EC55989_0632EC55989_0620EC55989_0629EC55989_0628EC55989_0633EC55989_0625EC55989_0626EC55989_0627EC55989_0624
ECOL585035 ECS88_0685ECS88_0672ECS88_0671ECS88_0682ECS88_0669ECS88_0679ECS88_0678ECS88_0683ECS88_0675ECS88_0676ECS88_0677ECS88_0673
ECOL585034 ECIAI1_0627ECIAI1_0614ECIAI1_0613ECIAI1_0624ECIAI1_0611ECIAI1_0621ECIAI1_0620ECIAI1_0625ECIAI1_0617ECIAI1_0618ECIAI1_0619ECIAI1_0615
ECOL481805 ECOLC_3002ECOLC_3014ECOLC_3015ECOLC_3005ECOLC_3017ECOLC_3008ECOLC_3009ECOLC_3004ECOLC_3012ECOLC_3011ECOLC_3010ECOLC_3013
ECOL469008 ECBD_3008ECBD_3020ECBD_3021ECBD_3011ECBD_3023ECBD_3014ECBD_3015ECBD_3010ECBD_3018ECBD_3017ECBD_3016ECBD_3019
ECOL439855 ECSMS35_0663ECSMS35_0651ECSMS35_0650ECSMS35_0660ECSMS35_0648ECSMS35_0657ECSMS35_0656ECSMS35_0661ECSMS35_0653ECSMS35_0654ECSMS35_0655ECSMS35_0652
ECOL413997 ECB_00612ECB_00600ECB_00599ECB_00609ECB_00597ECB_00606ECB_00605ECB_00610ECB_00602ECB_00603ECB_00604ECB_00601
ECOL409438 ECSE_0712ECSE_0698ECSE_0697ECSE_0709ECSE_0695ECSE_0705ECSE_0704ECSE_0710ECSE_0701ECSE_0702ECSE_0703ECSE_0699
ECOL405955 APECO1_1413APECO1_1424APECO1_1425APECO1_1415APECO1_1427APECO1_1419APECO1_1414APECO1_1422APECO1_1421APECO1_1420APECO1_1423
ECOL364106 UTI89_C0646UTI89_C0633UTI89_C0632UTI89_C0643UTI89_C0631UTI89_C0639UTI89_C0638UTI89_C0644UTI89_C0635UTI89_C0636UTI89_C0637UTI89_C0634
ECOL362663 ECP_0673ECP_0661ECP_0660ECP_0670ECP_0658ECP_0667ECP_0666ECP_0671ECP_0663ECP_0664ECP_0665ECP_0662
ECOL331111 ECE24377A_0669ECE24377A_0656ECE24377A_0655ECE24377A_0666ECE24377A_0652ECE24377A_0663ECE24377A_0662ECE24377A_0667ECE24377A_0658ECE24377A_0660ECE24377A_0661ECE24377A_0657
ECOL316407 ECK0636:JW0638:B0643ECK0624:JW0626:B0631ECK0623:JW5089:B0630ECK0633:JW0635:B0640ECK0621:JW0623:B0628ECK0630:JW5090:B0637ECK0629:JW0631:B0636ECK0634:JW0636:B0641ECK0626:JW0628:B0633ECK0627:JW0629:B0634ECK0628:JW0630:B0635ECK0625:JW0627:B0632
ECOL199310 C0734C0721C0720C0731C0718C0728C0727C0732C0724C0725C0726C0722
ECAR218491 ECA1310ECA1299ECA1298ECA1307ECA1297ECA1305ECA1304ECA1308ECA1301ECA1302ECA1303ECA1300
DARO159087 DARO_0289DARO_0288DARO_0542DARO_0287DARO_0170DARO_0171DARO_0111DARO_0112DARO_0113DARO_0291
CVIO243365 CV_3095CV_3096CV_0507CV_3097CV_0518CV_0517CV_4384CV_4361CV_4360CV_3094
CSAL290398 CSAL_1550CSAL_1551CSAL_2346CSAL_1552CSAL_1543CSAL_1544CSAL_1548CSAL_1546CSAL_1545CSAL_1549
CPSY167879 CPS_1723CPS_1711CPS_1710CPS_1720CPS_1709CPS_1717CPS_1716CPS_1721CPS_1713CPS_1714CPS_1715CPS_1712
CJAP155077 CJA_0795CJA_0796CJA_0452CJA_0797CJA_0787CJA_0788CJA_0453CJA_0792CJA_0790CJA_0789CJA_0793
CBUR434922 COXBU7E912_1346COXBU7E912_1350COXBU7E912_1508COXBU7E912_1351COXBU7E912_1511COXBU7E912_1512COXBU7E912_1060COXBU7E912_1514COXBU7E912_1513COXBU7E912_1345
BVIE269482 BCEP1808_2987BCEP1808_2984BCEP1808_0624BCEP1808_2983BCEP1808_2383BCEP1808_2384BCEP1808_0246BCEP1808_3198BCEP1808_3197BCEP1808_2989
BTHA271848 BTH_I0382BTH_I0385BTH_I1213BTH_I0386BTH_I1011BTH_I1010BTH_I3150BTH_I0142BTH_I0143BTH_I0380
BSP36773 BCEP18194_A6234BCEP18194_A6231BCEP18194_A3742BCEP18194_A6230BCEP18194_A5625BCEP18194_A5626BCEP18194_A3389BCEP18194_A6465BCEP18194_A6464BCEP18194_A6236
BPSE320372 BURPS1710B_A0664BURPS1710B_A0667BURPS1710B_A3726BURPS1710B_A0668BURPS1710B_A1455BURPS1710B_A1454BURPS1710B_A0047BURPS1710B_A0384BURPS1710B_A0385BURPS1710B_A0662
BPSE272560 BPSL0410BPSL0413BPSL2936BPSL0414BPSL1161BPSL1160BPSL3276BPSL0182BPSL0183BPSL0408
BPET94624 BPET4805BPET4804BPET3326BPET4803BPET3103BPET3104BPET0442BPET0431BPET0430BPET3320
BPER257313 BP0104BP0105BP2042BP0106BP2312BP2313BP0689BP0378BP0377BP0102
BPAR257311 BPP0168BPP0169BPP1729BPP0170BPP2418BPP2417BPP4039BPP4052BPP4053BPP0166
BMAL320389 BMA10247_3190BMA10247_3187BMA10247_2638BMA10247_3186BMA10247_0354BMA10247_0353BMA10247_2970BMA10247_2370BMA10247_2371BMA10247_3192
BMAL320388 BMASAVP1_A0222BMASAVP1_A0219BMASAVP1_A0368BMASAVP1_A0218BMASAVP1_A1071BMASAVP1_A1070BMASAVP1_A3399BMASAVP1_A2789BMASAVP1_A2788BMASAVP1_A0224
BMAL243160 BMA_0056BMA_0053BMA_2451BMA_0052BMA_1888BMA_1889BMA_2911BMA_0158BMA_0159BMA_0058
BCEN331272 BCEN2424_2891BCEN2424_2888BCEN2424_0656BCEN2424_2887BCEN2424_2298BCEN2424_2299BCEN2424_0286BCEN2424_3114BCEN2424_3113BCEN2424_2893
BCEN331271 BCEN_2276BCEN_2273BCEN_0173BCEN_2272BCEN_1686BCEN_1687BCEN_2820BCEN_2500BCEN_2499BCEN_2278
BBRO257310 BB0170BB0171BB3379BB0172BB1867BB1866BB4512BB4525BB4526BB0168
BAMB398577 BAMMC406_2803BAMMC406_2800BAMMC406_0577BAMMC406_2799BAMMC406_2215BAMMC406_2216BAMMC406_0214BAMMC406_3052BAMMC406_3051BAMMC406_2805
BAMB339670 BAMB_2941BAMB_2938BAMB_0551BAMB_2937BAMB_2336BAMB_2337BAMB_0200BAMB_3169BAMB_3168BAMB_2943
ASP76114 EBD70EBA3048EBA4383EBA3050EBA3971EBA3968EBA3043EBA3041EBA3040EBA3044
ASP62977 ACIAD2926ACIAD2927ACIAD3108ACIAD2275ACIAD3076ACIAD1113ACIAD2265ACIAD2263ACIAD1101ACIAD1225
ASP62928 AZO0182AZO0183AZO3217AZO0184AZO3608AZO3609AZO0179AZO0178AZO0177AZO0180
ASP232721 AJS_0300AJS_0299AJS_3915AJS_0298AJS_1901AJS_1902AJS_0622AJS_3647AJS_0242AJS_0272
ASAL382245 ASA_1069ASA_1057ASA_1056ASA_1066ASA_1054ASA_1064ASA_1063ASA_1067ASA_1059ASA_1061ASA_1062ASA_1058
APLE434271 APJL_1628APJL_1627APJL_0886APJL_1626APJL_1634APJL_1633APJL_0885APJL_1630APJL_1631APJL_1632APJL_1629
APLE416269 APL_1595APL_1594APL_0874APL_1593APL_1601APL_1600APL_0873APL_1597APL_1598APL_1599APL_1596
AHYD196024 AHA_3246AHA_3260AHA_3261AHA_3250AHA_3263AHA_3252AHA_3253AHA_3248AHA_3258AHA_3255AHA_3254AHA_3259
AFER243159 AFE_0533AFE_2580AFE_0532AFE_0160AFE_0159AFE_2579AFE_0189AFE_0536AFE_0537AFE_0535
AEHR187272 MLG_0399MLG_0179MLG_0402MLG_1586MLG_0405MLG_0406MLG_0175MLG_0173MLG_0172MLG_0176
ABAU360910 BAV0137BAV0138BAV2494BAV0139BAV2211BAV2212BAV3159BAV3172BAV3173BAV0135
AAVE397945 AAVE_0364AAVE_0363AAVE_4546AAVE_0362AAVE_3200AAVE_3199AAVE_4056AAVE_0846AAVE_0297AAVE_0332


Organism features enriched in list (features available for 130 out of the 136 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00656891292
Arrangment:Pairs 0.002465236112
Disease:Bubonic_plague 0.000112266
Disease:Dysentery 0.000112266
Disease:Gastroenteritis 0.00003251013
Endospores:No 0.000130130211
GC_Content_Range4:0-40 3.688e-1710213
GC_Content_Range4:40-60 4.223e-1284224
GC_Content_Range7:30-40 7.659e-1110166
GC_Content_Range7:40-50 0.001521638117
GC_Content_Range7:50-60 4.993e-846107
Genome_Size_Range5:0-2 4.801e-154155
Genome_Size_Range5:2-4 7.513e-624197
Genome_Size_Range5:4-6 1.330e-2187184
Genome_Size_Range9:1-2 1.914e-114128
Genome_Size_Range9:2-3 0.000491114120
Genome_Size_Range9:4-5 9.579e-94496
Genome_Size_Range9:5-6 1.164e-94388
Gram_Stain:Gram_Neg 2.699e-24121333
Motility:No 2.060e-811151
Motility:Yes 6.548e-1090267
Optimal_temp.:35-37 0.0003022913
Oxygen_Req:Aerobic 0.007530731185
Oxygen_Req:Anaerobic 2.634e-84102
Oxygen_Req:Facultative 8.527e-1684201
Pathogenic_in:Animal 0.00512322366
Pathogenic_in:Human 0.001004362213
Pathogenic_in:No 0.000023931226
Shape:Coccus 6.067e-7382
Shape:Rod 1.261e-13112347
Shape:Spiral 0.0014836134
Temp._range:Mesophilic 0.0048073115473
Temp._range:Psychrophilic 0.004554669
Temp._range:Thermophilic 0.0011684135



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ORGANISMS CONTAINING AT MOST 2 GENES FROM THE GROUP:

Total number of orgs: 195
Effective number of orgs (counting one per cluster within 468 clusters): 146

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TSP28240 Thermotoga sp.2
TPET390874 ncbi Thermotoga petrophila RKU-12
TPEN368408 ncbi Thermofilum pendens Hrk 50
TMAR243274 ncbi Thermotoga maritima MSB82
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4402
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-92
STHE299768 ncbi Streptococcus thermophilus CNRZ10662
STHE264199 ncbi Streptococcus thermophilus LMG 183112
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH332
SSOL273057 ncbi Sulfolobus solfataricus P20
SPYO370554 ncbi Streptococcus pyogenes MGAS107502
SPYO370553 ncbi Streptococcus pyogenes MGAS20962
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94292
SPYO319701 ncbi Streptococcus pyogenes MGAS61802
SPYO293653 ncbi Streptococcus pyogenes MGAS50052
SPYO286636 ncbi Streptococcus pyogenes MGAS103942
SPYO198466 ncbi Streptococcus pyogenes MGAS3152
SPYO193567 ncbi Streptococcus pyogenes SSI-12
SPYO186103 ncbi Streptococcus pyogenes MGAS82322
SPYO160490 ncbi Streptococcus pyogenes M1 GAS2
SPNE488221 ncbi Streptococcus pneumoniae 705852
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-142
SPNE171101 ncbi Streptococcus pneumoniae R62
SPNE170187 ncbi Streptococcus pneumoniae G542
SPNE1313 Streptococcus pneumoniae2
SMUT210007 ncbi Streptococcus mutans UA1592
SMAR399550 ncbi Staphylothermus marinus F10
SGOR29390 Streptococcus gordonii Challis2
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23382
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122282
SEPI176279 ncbi Staphylococcus epidermidis RP62A2
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46802
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83252
SAUR426430 ncbi Staphylococcus aureus aureus Newman2
SAUR418127 ncbi Staphylococcus aureus aureus Mu32
SAUR367830 Staphylococcus aureus aureus USA3002
SAUR359787 ncbi Staphylococcus aureus aureus JH12
SAUR359786 ncbi Staphylococcus aureus aureus JH92
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4762
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2522
SAUR273036 ncbi Staphylococcus aureus RF1222
SAUR196620 ncbi Staphylococcus aureus aureus MW22
SAUR158879 ncbi Staphylococcus aureus aureus N3152
SAUR158878 ncbi Staphylococcus aureus aureus Mu502
SARE391037 ncbi Salinispora arenicola CNS-2052
SAGA211110 ncbi Streptococcus agalactiae NEM3162
SAGA208435 ncbi Streptococcus agalactiae 2603V/R2
SAGA205921 ncbi Streptococcus agalactiae A9092
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP101510 ncbi Rhodococcus jostii RHA12
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332092
RALB246199 Ruminococcus albus 80
PTOR263820 ncbi Picrophilus torridus DSM 97901
PSP117 Pirellula sp.2
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257452
PMOB403833 ncbi Petrotoga mobilis SJ951
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PACN267747 ncbi Propionibacterium acnes KPA1712022
PABY272844 ncbi Pyrococcus abyssi GE50
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101522
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-12
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra2
MTUB336982 ncbi Mycobacterium tuberculosis F112
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv2
MTBCDC ncbi Mycobacterium tuberculosis CDC15512
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1552
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK2
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P22
MBOV233413 ncbi Mycobacterium bovis AF2122/972
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199772
LXYL281090 ncbi Leifsonia xyli xyli CTCB072
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53342
LSAK314315 ncbi Lactobacillus sakei sakei 23K2
LREU557436 ncbi Lactobacillus reuteri DSM 200162
LPLA220668 ncbi Lactobacillus plantarum WCFS12
LMON265669 ncbi Listeria monocytogenes 4b F23652
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82932
LLAC272623 ncbi Lactococcus lactis lactis Il14032
LLAC272622 ncbi Lactococcus lactis cremoris SK112
LJOH257314 ncbi Lactobacillus johnsonii NCC 5332
LHEL405566 ncbi Lactobacillus helveticus DPC 45712
LGAS324831 ncbi Lactobacillus gasseri ATCC 333232
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118422
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3652
LCAS321967 ncbi Lactobacillus casei ATCC 3342
LBRE387344 ncbi Lactobacillus brevis ATCC 3672
LACI272621 ncbi Lactobacillus acidophilus NCFM2
KRAD266940 ncbi Kineococcus radiotolerans SRS302162
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
ERUM302409 ncbi Ehrlichia ruminantium Gardel2
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden2
EFAE226185 ncbi Enterococcus faecalis V5832
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPHY357809 ncbi Clostridium phytofermentans ISDg2
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3822
CMIC31964 ncbi Clavibacter michiganensis sepedonicus2
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4112
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCAV227941 ncbi Chlamydophila caviae GPIC1
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1352
BLON206672 ncbi Bifidobacterium longum NCC27052
BHER314723 ncbi Borrelia hermsii DAH2
BGAR290434 ncbi Borrelia garinii PBi2
BBUR224326 ncbi Borrelia burgdorferi B312
BAFZ390236 ncbi Borrelia afzelii PKo2
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG12
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40182
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  EG12851   EG11592   EG11591   EG11412   EG11306   EG11255   EG11254   EG10855   EG10854   EG10607   EG10606   EG10201   
UURE95667
UURE95664 UUR10_0171
UPAR505682
UMET351160 RRC130
TWHI218496 TW0283
TWHI203267 TW463
TVOL273116
TSP28240 TRQ2_0083TRQ2_0345
TPET390874 TPET_0083TPET_0327
TPEN368408
TMAR243274 TM_0844TM_0590
TKOD69014
TACI273075
STRO369723 STROP_3326STROP_0087
STOK273063
STHE322159 STER_1581STER_2001
STHE299768 STR1617STR2023
STHE264199 STU1617STU2023
SSUI391296 SSU98_0365
SSUI391295 SSU05_0374SSU05_2191
SSOL273057
SPYO370554 MGAS10750_SPY0260MGAS10750_SPY1977
SPYO370553 MGAS2096_SPY0283MGAS2096_SPY1896
SPYO370552 MGAS10270_SPY0262
SPYO370551 MGAS9429_SPY0264MGAS9429_SPY1876
SPYO319701 M28_SPY0257M28_SPY1897
SPYO293653 M5005_SPY0265M5005_SPY1864
SPYO286636 M6_SPY0293M6_SPY1884
SPYO198466 SPYM3_0228SPYM3_1863
SPYO193567 SPS1632SPS1859
SPYO186103 SPYM18_0306SPYM18_2255
SPYO160490 SPY0310SPY2215
SPNE488221 SP70585_1783SP70585_2368
SPNE487214 SPH_1853
SPNE487213 SPT_1682SPT_2259
SPNE171101 SPR1589SPR2044
SPNE170187 SPN02048SPN01069
SPNE1313 SPJ_1640SPJ_2268
SMUT210007 SMU_1797CSMU_2162C
SMAR399550
SGOR29390 SGO_0450SGO_2149
SERY405948 SACE_1636SACE_1432
SEPI176280 SE_0617SE_0023
SEPI176279 SERP0511SERP2529
SCO
SAVE227882 SAV6010SAV5480
SAUR93062 SACOL0927
SAUR93061 SAOUHSC_00861SAOUHSC_00027
SAUR426430 NWMN_0796NWMN_0023
SAUR418127 SAHV_0919SAHV_0024
SAUR367830 SAUSA300_0829SAUSA300_0026
SAUR359787 SAURJH1_0942SAURJH1_0024
SAUR359786 SAURJH9_0923SAURJH9_0024
SAUR282459 SAS0795SAS0024
SAUR282458 SAR0887SAR0024
SAUR273036 SAB0791SAB0024
SAUR196620 MW0807MW0024
SAUR158879 SA0785SA0023
SAUR158878 SAV0924SAV0024
SARE391037 SARE_3560SARE_0084
SAGA211110 GBS1703GBS2132
SAGA208435 SAG_1659SAG_2173
SAGA205921 SAK_1671SAK_2134
SACI330779
RSP101510 RHA1_RO01153RHA1_RO00248
RSAL288705 RSAL33209_2442RSAL33209_2443
RALB246199
PTOR263820 PTO1260
PSP117 RB4868RB5749
PPEN278197 PEPE_0708PEPE_1831
PMOB403833 PMOB_1422
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102 PARS_1183
PAER178306 PAE2651
PACN267747 PPA0692PPA2239
PABY272844
NPHA348780
NFAR247156 NFA16870NFA13770
MVAN350058 MVAN_3581MVAN_3925
MTUB419947 MRA_2233MRA_2446
MTUB336982 TBFG_12245TBFG_12448
MTHE349307 MTHE_1412
MTHE187420
MTBRV RV2217RV2420C
MTBCDC MT2274MT2493
MSYN262723 MS53_0516
MSTA339860
MSP189918 MKMS_3377
MSP164757 MJLS_3326
MSP164756 MMCS_3315
MSME246196 MSMEG_4285MSMEG_4580
MSED399549
MPUL272635
MPNE272634
MPEN272633 MYPE5180
MMYC272632 MSC_0424
MMOB267748
MMAZ192952
MMAR444158 MMARC6_1622
MMAR426368 MMARC7_0291
MMAR402880 MMARC5_0556
MMAR368407
MMAR267377 MMP1037
MLEP272631 ML0859
MLAB410358 MLAB_0677
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2595
MGIL350054 MFLV_2933MFLV_2654
MGEN243273
MFLO265311
MCAP340047 MCAP_0548
MBUR259564
MBOV410289 BCG_2233BCG_2436C
MBOV233413 MB2240MB2443C
MBAR269797
MART243272
MAEO419665
MACE188937
MABS561007 MAB_1943CMAB_1622
LXYL281090 LXX10110LXX08120
LWEL386043 LWE1499LWE0270
LSAK314315 LSA1389LSA0084
LREU557436 LREU_1233LREU_0027
LPLA220668 LP_1532LP_0045
LMON265669 LMOF2365_1505LMOF2365_0314
LMES203120 LEUM_1736LEUM_1945
LLAC272623 L28204L185851
LLAC272622 LACR_0234LACR_2438
LJOH257314 LJ_1634LJ_0071
LHEL405566 LHV_1591LHV_0101
LGAS324831 LGAS_1401LGAS_0070
LDEL390333 LDB1496LDB0141
LDEL321956 LBUL_1392LBUL_0119
LCAS321967 LSEI_1686LSEI_2793
LBRE387344 LVIS_1027LVIS_0035
LACI272621 LBA1528LBA0084
KRAD266940 KRAD_3284KRAD_3288
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914 HMUK_0672
HMAR272569
HBUT415426
ERUM302409 ERGA_CDS_06580ERGA_CDS_05440
ERUM254945 ERWE_CDS_06670ERWE_CDS_05550
EFAE226185 EF_3025EF_2476
DSP255470
DSP216389
DETH243164
CTRA471473 CTLON_0138
CTRA471472 CTL0138
CSUL444179 SMGWSS_001
CPRO264201 PC1239
CPNE182082 CPB0947
CPNE138677 CPJ0915
CPNE115713 CPN0915
CPNE115711 CP_0951
CPHY357809 CPHY_0910CPHY_2372
CNOV386415 NT01CX_0953
CMUR243161 TC_0150
CMIC443906 CMM_1209CMM_1497
CMIC31964 CMS1882CMS1808
CMET456442 MBOO_2340
CMAQ397948
CKOR374847
CJEI306537 JK0706JK0568
CGLU196627 CG2422
CFEL264202 CF0162
CEFF196164 CE2099
CDIP257309 DIP1640
CCAV227941 CCA_00854
CABO218497 CAB819
BXEN266265 BXE_B0316
BTUR314724 BT0735BT0718
BLON206672 BL0965BL1253
BHER314723 BH0735BH0718
BGAR290434 BG0757BG0740
BBUR224326 BB_0735BB_0718
BAFZ390236 BAPKO_0779BAPKO_0762
AYEL322098
AURANTIMONAS
APER272557
ANAE240017 ANA_0901ANA_0484
ALAI441768 ACL_0212
AFUL224325
ABUT367737 ABU_0976ABU_0996
AAUR290340 AAUR_1748


Organism features enriched in list (features available for 184 out of the 195 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00298574092
Arrangment:Clusters 7.293e-81617
Disease:Pharyngitis 0.000088588
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 2.509e-61111
Disease:Wide_range_of_infections 2.509e-61111
Disease:bronchitis_and_pneumonitis 0.000088588
Disease:endocarditis 0.009701144
Endospores:No 1.156e-32131211
Endospores:Yes 0.0025191853
GC_Content_Range4:0-40 1.722e-795213
GC_Content_Range4:40-60 0.000355053224
GC_Content_Range7:0-30 0.00184002447
GC_Content_Range7:30-40 0.000109171166
GC_Content_Range7:50-60 3.275e-615107
GC_Content_Range7:60-70 0.001441329134
Genome_Size_Range5:0-2 2.357e-1589155
Genome_Size_Range5:4-6 1.669e-1519184
Genome_Size_Range9:0-1 3.597e-62027
Genome_Size_Range9:1-2 1.367e-969128
Genome_Size_Range9:2-3 0.000092855120
Genome_Size_Range9:3-4 0.00037631277
Genome_Size_Range9:4-5 5.133e-71196
Genome_Size_Range9:5-6 7.426e-8888
Genome_Size_Range9:6-8 0.0014377438
Gram_Stain:Gram_Neg 1.397e-3537333
Gram_Stain:Gram_Pos 1.712e-2094150
Habitat:Host-associated 0.001572280206
Habitat:Multiple 0.004686844178
Motility:No 5.655e-2195151
Motility:Yes 8.084e-1247267
Optimal_temp.:- 2.903e-1047257
Optimal_temp.:30-35 0.004521067
Optimal_temp.:30-37 0.00005051418
Optimal_temp.:37 0.002880945106
Optimal_temp.:85 0.009701144
Oxygen_Req:Aerobic 0.000062939185
Oxygen_Req:Anaerobic 0.004068443102
Oxygen_Req:Facultative 0.001880378201
Pathogenic_in:Animal 0.00940291366
Pathogenic_in:Swine 0.003015955
Salinity:Non-halophilic 0.005048244106
Shape:Branched_filament 0.009701144
Shape:Coccus 2.606e-155882
Shape:Irregular_coccus 1.806e-91717
Shape:Rod 2.464e-1566347
Shape:Sphere 2.054e-61619
Temp._range:Hyperthermophilic 3.458e-71923



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 10
Effective number of orgs (counting one per cluster within 468 clusters): 10

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
SDEG203122 ncbi Saccharophagus degradans 2-40 0.0021507167112
WPIP80849 Wolbachia endosymbiont of Brugia malayi 0.00217123337
AMAR234826 ncbi Anaplasma marginale St. Maries 0.00275843457
HDUC233412 ncbi Haemophilus ducreyi 35000HP 0.0052048135611
WPIP955 Wolbachia pipientis 0.00557483837
NMUL323848 ncbi Nitrosospira multiformis ATCC 25196 0.0062311137911
HHAL349124 ncbi Halorhodospira halophila SL1 0.0062796138011
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-111 0.0065739105310
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC125 0.0079138186212
MAQU351348 ncbi Marinobacter aquaeolei VT8 0.0097151189412


Names of the homologs of the genes in the group in each of these orgs
  EG12851   EG11592   EG11591   EG11412   EG11306   EG11255   EG11254   EG10855   EG10854   EG10607   EG10606   EG10201   
SDEG203122 SDE_0534SDE_3336SDE_3335SDE_3310SDE_3334SDE_3343SDE_3342SDE_3309SDE_3338SDE_3340SDE_3341SDE_3337
WPIP80849 WB_0369WB_0469WB_0383WB_0192WB_0023WB_0118WB_0447
AMAR234826 AM941AM820AM980AM590AM005AM1196AM1091
HDUC233412 HD_2015HD_2013HD_1130HD_2012HD_2023HD_2022HD_1131HD_2017HD_2019HD_2020HD_2016
WPIP955 WD_1014WD_0392WD_1117WD_0496WD_1108WD_0719WD_0098
NMUL323848 NMUL_A1989NMUL_A1988NMUL_A0513NMUL_A1987NMUL_A0361NMUL_A0362NMUL_A0512NMUL_A0315NMUL_A0316NMUL_A0317NMUL_A1991
HHAL349124 HHAL_2146HHAL_1014HHAL_1015HHAL_2143HHAL_0116HHAL_2140HHAL_2139HHAL_1011HHAL_1009HHAL_1008HHAL_1012
CBUR434922 COXBU7E912_1346COXBU7E912_1350COXBU7E912_1508COXBU7E912_1351COXBU7E912_1511COXBU7E912_1512COXBU7E912_1060COXBU7E912_1514COXBU7E912_1513COXBU7E912_1345
PHAL326442 PSHAA1032PSHAA1021PSHAA1020PSHAA1029PSHAA1019PSHAA1027PSHAA1026PSHAA1030PSHAA1023PSHAA1024PSHAA1025PSHAA1022
MAQU351348 MAQU_2743MAQU_2409MAQU_2408MAQU_2746MAQU_2373MAQU_2415MAQU_2414MAQU_2745MAQU_2411MAQU_2412MAQU_2413MAQU_2410


Organism features enriched in list (features available for 8 out of the 10 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181310.6795
AST-PWY (arginine degradation II (AST pathway))120890.6188
GLYCOCAT-PWY (glycogen degradation I)2461240.5588
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911080.5588
GALACTITOLCAT-PWY (galactitol degradation)73610.5444
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761010.5401
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81630.5236
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951050.5231
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001320.5172
PWY-5918 (heme biosynthesis I)2721220.4906
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50450.4875
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251090.4844
PWY-1269 (CMP-KDO biosynthesis I)3251330.4827
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861240.4801
PWY-5913 (TCA cycle variation IV)3011270.4766
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901240.4728
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911240.4710
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961250.4698
PWY-5386 (methylglyoxal degradation I)3051270.4696
PWY-6196 (serine racemization)102660.4593
GLUCONSUPER-PWY (D-gluconate degradation)2291060.4514
GLUCARDEG-PWY (D-glucarate degradation I)152830.4507
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149820.4507
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481330.4463
PWY-4041 (γ-glutamyl cycle)2791180.4461
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491100.4414
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491100.4414
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391300.4369
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183910.4355
LIPASYN-PWY (phospholipases)212990.4324
DAPLYSINESYN-PWY (lysine biosynthesis I)3421300.4322
PWY-5148 (acyl-CoA hydrolysis)2271020.4235
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91580.4196
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))191910.4155
PWY0-1182 (trehalose degradation II (trehalase))70490.4149
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301010.4090
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212960.4078
PWY-46 (putrescine biosynthesis III)138730.4012
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135720.4011



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11592   EG11591   EG11412   EG11306   EG11255   EG11254   EG10855   EG10854   EG10607   EG10606   EG10201   
EG128510.9987760.9987670.9992450.9987210.9990530.9990420.9992420.9988320.9988870.9986560.998789
EG115920.9997860.9986560.9997030.9990690.9991170.9987890.9994580.9994460.9993660.999733
EG115910.9989090.9998740.9988990.9989650.9987630.9994340.9993970.9993390.999725
EG114120.9988390.9993740.9992830.9996080.9990410.9991250.9990250.999
EG113060.9985660.9987420.9987050.9994780.9993420.9992770.999677
EG112550.9999270.999170.9991350.9993790.9993280.999072
EG112540.9991210.9991970.9992920.9993110.998992
EG108550.9988960.9990350.9988680.99882
EG108540.9996710.9996160.999794
EG106070.9999350.999549
EG106060.999432
EG10201



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PAIRWISE BLAST SCORES:

  EG12851   EG11592   EG11591   EG11412   EG11306   EG11255   EG11254   EG10855   EG10854   EG10607   EG10606   EG10201   
EG128510.0f0-----------
EG11592-0.0f0----------
EG11591--0.0f0---------
EG11412---0.0f0--------
EG11306----0.0f0-------
EG11255-----0.0f0------
EG11254------0.0f0-----
EG10855-------0.0f0----
EG10854--------0.0f0---
EG10607---------0.0f0--
EG10606----------0.0f0-
EG10201-----------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY0-501 (lipoate biosynthesis and incorporation I) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.167, average score: 0.859)
  Genes in pathway or complex:
   *in cand* 0.9992 0.9986 EG11306 (lipA) EG11306-MONOMER (lipoate synthase monomer)
   *in cand* 0.9993 0.9988 EG11591 (lipB) EG11591-MONOMER (lipoyl-protein ligase)
             0.4726 0.0018 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9988 EG10201 (dacA) EG10201-MONOMER (D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5)
   *in cand* 0.9993 0.9987 EG10606 (mrdA) EG10606-MONOMER (cell shape; peptidoglycan synthetase; penicillin-binding protein 2)
   *in cand* 0.9994 0.9989 EG10607 (mrdB) EG10607-MONOMER (rod shape-determining membrane protein; sensitivity to radiation and drugs)
   *in cand* 0.9994 0.9988 EG10854 (rlpA) EG10854-MONOMER (rare lipoprotein RlpA)
   *in cand* 0.9991 0.9987 EG10855 (lptE) EG10855-MONOMER (rare lipoprotein LptE)
   *in cand* 0.9992 0.9987 EG11254 (rlmH) EG11254-MONOMER (23S rRNA m3Ψ1915 methyltransferase)
   *in cand* 0.9992 0.9986 EG11255 (ybeB) EG11255-MONOMER (predicted protein)
   *in cand* 0.9992 0.9987 EG11412 (holA) EG11412-MONOMER (DNA polymerase III, δ subunit)
   *in cand* 0.9993 0.9987 EG11592 (ybeD) EG11592-MONOMER (conserved protein)
   *in cand* 0.9990 0.9987 EG12851 (ybeL) EG12851-MONOMER (conserved protein)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10201 EG10606 EG10607 EG10854 EG10855 EG11254 EG11255 EG11306 EG11412 EG11591 EG11592 EG12851 (centered at EG10606)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12851   EG11592   EG11591   EG11412   EG11306   EG11255   EG11254   EG10855   EG10854   EG10607   EG10606   EG10201   
73/623148/623382/623193/623390/623406/623403/623101/623310/623351/623363/623298/623
AAEO224324:0:Tyes----947887--9630824-
AAUR290340:2:Tyes--0---------
AAVE397945:0:Tyes-676641796528582857-3693540035
ABAC204669:0:Tyes--4320-450602-259114551454-
ABAU360910:0:Tyes-232367420792080-3032304530460
ABOR393595:0:Tyes--1401545-97610
ABUT367737:0:Tyes--------0-20-
ACAU438753:0:Tyes--1105-024162415-429--430
ACEL351607:0:Tyes--176------10-
ACRY349163:8:Tyes--2045-2587-1299-7224084070
ADEH290397:0:Tyes--1624-1631020-379623032304-
AEHR187272:0:Tyes226-72291406232233-3104
AFER243159:0:Tyes--369238236810238129372373371
AHYD196024:0:Tyes01415417672129813
ALAI441768:0:Tyes------0-----
AMAR234826:0:Tyes--682-578708--4230859783
AMAR329726:9:Tyes--2628-3311---010072975-
AMET293826:0:Tyes--3041-30409253361--0--
ANAE240017:0:Tyes--387--0------
AORE350688:0:Tyes------1086--3380-
APHA212042:0:Tyes--33-1500-----946
APLE416269:0:Tyes-75375217517597580755756757754
APLE434271:0:Tno-78077917787867850782783784781
ASAL382245:5:Tyes143211098125674
ASP1667:3:Tyes--1-0774------
ASP232721:2:Tyes-585735865616091610-3753308030
ASP62928:0:Tyes-563096734923493-2103
ASP62977:0:Tyes-1691169218561101183110-109310910121
ASP76114:2:Tyes-567877544543-2103
AVAR240292:3:Tyes--2928-200---036291344-
BABO262698:0:Tno--0---------
BABO262698:1:Tno----126806805-0--1
BAFZ390236:2:Fyes--------17-0-
BAMB339670:3:Tno-28162813371281222052206-0304430432818
BAMB398577:3:Tno-26312628376262720392040-0287928782633
BAMY326423:0:Tyes----250419533275--106901720
BANT260799:0:Tno----276321293230--166501888
BANT261594:2:Tno----274521363214--164901889
BANT568206:2:Tyes----456339285049--017663676
BANT592021:2:Tno----288622523376--176102000
BAPH198804:0:Tyes-21001661-------
BAPH372461:0:Tyes-1350-1-------
BBAC264462:0:Tyes--0------15671566-
BBAC360095:0:Tyes--543-21201-471---
BBRO257310:0:Tyes-233231417171716-4387440044010
BBUR224326:21:Fno--------17-0-
BCAN483179:0:Tno--0---------
BCAN483179:1:Tno----135838--0--1
BCEN331271:2:Tno-213021270212615361537-2684235223512132
BCEN331272:3:Tyes-25992596369259520092010-0282228212601
BCER226900:1:Tyes----271420833187--167401836
BCER288681:0:Tno----268420423139--163801798
BCER315749:1:Tyes----182113322230--84501057
BCER405917:1:Tyes----269320233171--158801766
BCER572264:1:Tno----272320923221--167401843
BCIC186490:0:Tyes--405----32-
BCLA66692:0:Tyes----132502462--719-155
BFRA272559:1:Tyes--1322-1890656--31463147-
BFRA295405:0:Tno--1267-2030700--33723373-
BGAR290434:2:Fyes--------17-0-
BHAL272558:0:Tyes----212602698--12422080211
BHEN283166:0:Tyes--593-40201-648--649
BHER314723:0:Fyes--------18-0-
BJAP224911:0:Fyes--4860-407201-4116--4114
BLIC279010:0:Tyes----268420463558--08321798
BLON206672:0:Tyes-----0294-----
BMAL243160:1:Tno-412148016351636-25691011026
BMAL320388:1:Tno-411500840839-3109251625156
BMAL320389:1:Tyes-277527722235277110-2560196819692777
BMEL224914:0:Tno--0---------
BMEL224914:1:Tno----66501-800--799
BMEL359391:0:Tno--0---------
BMEL359391:1:Tno----123778777-0--1
BOVI236:0:Tyes--0---------
BOVI236:1:Tyes----116728727-0--1
BPAR257311:0:Tno-231495421592158-3712372437250
BPER257313:0:Tyes-231727419711972-5222462450
BPET94624:0:Tyes-442344222925442126942695-12102919
BPSE272560:1:Tyes-2272302769231979978-311201225
BPSE320372:1:Tno-612614354861513981397-0333334610
BPSE320373:1:Tno--271313327210341033-352301267
BPUM315750:0:Tyes----14838712253--0-654
BQUI283165:0:Tyes--137-0---98--97
BSP107806:2:Tyes-21701741-------
BSP36773:2:Tyes-29002897364289622862287-0313131302902
BSP376:0:Tyes--2687-327110-3217--3221
BSUB:0:Tyes----298622743799--118902052
BSUI204722:0:Tyes--0---------
BSUI204722:1:Tyes----132823822-0--1
BSUI470137:0:Tno--0--694------
BSUI470137:1:Tno----135---0--1
BTHA271848:1:Tno-2402431061244866865-294601238
BTHE226186:0:Tyes--0-31622977483--27782777-
BTHU281309:1:Tno----264120333098--162201784
BTHU412694:1:Tno----241018272842--146101609
BTRI382640:1:Tyes--1161-61101-874--875
BTUR314724:0:Fyes--------18-0-
BVIE269482:7:Tyes-27162713374271221202121-0292729262718
BWEI315730:4:Tyes----268520553136--161901786
BXEN266265:1:Tyes----0-------
CABO218497:0:Tyes-----0------
CACE272562:1:Tyes------2291--30803
CAULO:0:Tyes--635-18919091910-27810-
CBEI290402:0:Tyes------3408--0314288
CBLO203907:0:Tyes---3-2-4-01-
CBLO291272:0:Tno---3-2-4-01-
CBOT36826:1:Tno------2921--0-1214
CBOT441770:0:Tyes------2892--0-1122
CBOT441771:0:Tno------1811--0-176
CBOT441772:1:Tno------2951--0-1143
CBOT498213:1:Tno------2955--0-1153
CBOT508765:1:Tyes------2866--180701732
CBOT515621:2:Tyes------3100--0-1316
CBOT536232:0:Tno------3189--0-1249
CBUR227377:1:Tyes-67768076812--41501676
CBUR360115:1:Tno-68869276932--26801687
CBUR434922:2:Tno-273277430278433434-0436435272
CCAV227941:1:Tyes-----0------
CCHL340177:0:Tyes----9850--16084881084-
CCON360104:2:Tyes--------71880-
CCUR360105:0:Tyes--------13021-
CDES477974:0:Tyes-----642---2352390
CDIF272563:1:Tyes-----13922531--0-141
CDIP257309:0:Tyes--0---------
CEFF196164:0:Fyes--0---------
CFEL264202:1:Tyes-----0------
CFET360106:0:Tyes--------8390-
CGLU196627:0:Tyes--0---------
CHOM360107:1:Tyes--------09698-
CHUT269798:0:Tyes--0-26781452285-1732-2793-
CHYD246194:0:Tyes-----3230--2912781855
CJAP155077:0:Tyes-32832903303203211325323322326
CJEI306537:0:Tyes--145--0------
CJEJ192222:0:Tyes--------06156-
CJEJ195099:0:Tno--------06436-
CJEJ354242:2:Tyes--------06066-
CJEJ360109:0:Tyes--------8580852-
CJEJ407148:0:Tno--------06376-
CKLU431943:1:Tyes--1385-1384-1439--01843371
CMET456442:0:Tyes------0-----
CMIC31964:2:Tyes--68--0------
CMIC443906:2:Tyes--0--295------
CMUR243161:1:Tyes-----0------
CNOV386415:0:Tyes------0-----
CPEL335992:0:Tyes--870-7210---11551156778
CPER195102:1:Tyes------864--336-0
CPER195103:0:Tno------801--324-0
CPER289380:3:Tyes------772--52-0
CPHY357809:0:Tyes------0---1443-
CPNE115711:1:Tyes-----0------
CPNE115713:0:Tno-----0------
CPNE138677:0:Tno-----0------
CPNE182082:0:Tno-----0------
CPRO264201:0:Fyes-----0------
CPSY167879:0:Tyes142111087124563
CRUT413404:0:Tyes--3800381180---313612312
CSAL290398:0:Tyes-78817901-5326
CSP501479:6:Fyes-----210211--10-
CSP501479:8:Fyes--0-1480------1991
CSP78:2:Tyes--1685-126332603261-121102731669
CSUL444179:0:Tyes--0---------
CTEP194439:0:Tyes----9280--1909149420-
CTET212717:0:Tyes------0--175117541265
CTRA471472:0:Tyes-----0------
CTRA471473:0:Tno-----0------
CVES412965:0:Tyes--3460347----283565282
CVIO243365:0:Tyes-26482649026501110-3989396639652647
DARO159087:0:Tyes-1811804401795960-012183
DDES207559:0:Tyes--2233-223412571803-0480481-
DGEO319795:1:Tyes--651-652-551-0---
DHAF138119:0:Tyes-----8582720--8718750
DNOD246195:0:Tyes--6310230217669-692694695633
DOLE96561:0:Tyes-----0--2613512511-
DPSY177439:2:Tyes--1-023921977-1749813812-
DRAD243230:3:Tyes--145-146-0-----
DRED349161:0:Tyes--0-119082694--19361940488
DSHI398580:5:Tyes--2333-151901--514515854
DVUL882:1:Tyes--506-5051216852-0385386-
ECAN269484:0:Tyes--104-0------323
ECAR218491:0:Tyes132110087114563
ECHA205920:0:Tyes--0-115------661
ECOL199310:0:Tno1632130109146784
ECOL316407:0:Tno153212098135674
ECOL331111:6:Tno17431401110157895
ECOL362663:0:Tno153212098135674
ECOL364106:1:Tno152112087134563
ECOL405955:2:Tyes1532120-8135674
ECOL409438:6:Tyes1732140109156784
ECOL413997:0:Tno153212098135674
ECOL439855:4:Tno153212098135674
ECOL469008:0:Tno01213315672109811
ECOL481805:0:Tno01213315672109811
ECOL585034:0:Tno153212098135674
ECOL585035:0:Tno142111087124563
ECOL585055:0:Tno153212098135674
ECOL585056:2:Tno1643130109146785
ECOL585057:0:Tno153212098135674
ECOL585397:0:Tno153212098135674
ECOL83334:0:Tno153212098135674
ECOLI:0:Tno153212098135674
ECOO157:0:Tno153212098135674
EFAE226185:3:Tyes------517---0-
EFER585054:1:Tyes0111231356298710
ELIT314225:0:Tyes--0-120126002601-1513109210931181
ERUM254945:0:Tyes--115-0-------
ERUM302409:0:Tno--117-0-------
ESP42895:1:Tyes143211098125674
FALN326424:0:Tyes--3181--18---10-
FJOH376686:0:Tyes--1745-26-3326-0-1268-
FMAG334413:1:Tyes------1156--3890-
FNOD381764:0:Tyes-----0---675558-
FNUC190304:0:Tyes------0--564748-
FPHI484022:1:Tyes-1095109409521059441----1096
FRANT:0:Tno--7790423841-----777
FSP106370:0:Tyes--924--19---10-
FSP1855:0:Tyes--0-15163405----3425-
FSUC59374:0:Tyes--------5410-
FTUL351581:0:Tno--1148610149701----116
FTUL393011:0:Tno--1077550135618----109
FTUL393115:0:Tyes--7700416832-----768
FTUL401614:0:Tyes--72908495961358----727
FTUL418136:0:Tno--2771114380-----0
FTUL458234:0:Tno--1047680130628----106
GBET391165:0:Tyes--0-60111231124-484879880485
GFOR411154:0:Tyes--1824-160215920---1860-
GKAU235909:1:Tyes----189214212386--0-1212
GMET269799:1:Tyes--18211379222222732274-245310-
GOXY290633:5:Tyes--27-226011251126-416170817070
GSUL243231:0:Tyes--20451818028152814-7516891690-
GTHE420246:1:Tyes----19121444---501234
GURA351605:0:Tyes--8702713037033702-28724492450-
GVIO251221:0:Tyes--3425-0-313-1204672430-
HACI382638:1:Tyes--------9220916-
HARS204773:0:Tyes-2667266823432669350349-2102665
HAUR316274:2:Tyes--273-02133---38834630-
HCHE349521:0:Tyes0-4684467476475-471473474470
HDUC233412:0:Tyes-75575307527617601757758759756
HHAL349124:0:Tyes20489129132045020422041-909907906910
HHEP235279:0:Tyes--------5560564-
HINF281310:0:Tyes-219770879764563
HINF374930:0:Tyes-677458017464325
HINF71421:0:Tno-218760878754563
HMOD498761:0:Tyes-----2243510--226822720
HMUK485914:1:Tyes----0-------
HNEP81032:0:Tyes--751-169301-1492258625871491
HPY:0:Tno--------8400834-
HPYL357544:1:Tyes--------8160810-
HPYL85963:0:Tno--------7930787-
HSOM205914:1:Tyes-21123708712384563
HSOM228400:0:Tno-21287076286345-
ILOI283942:0:Tyes-10111123408659
JSP290400:1:Tyes--879-18620---33093308906
JSP375286:0:Tyes-3096309727433098351350-2103094
KPNE272620:2:Tyes410040884087409740854094409340984090409104089
KRAD266940:2:Fyes--4-0-------
LACI272621:0:Tyes-----14110-----
LBIF355278:2:Tyes--810-0---1693-1532-
LBIF456481:2:Tno--831-0---1758-1592-
LBOR355276:1:Tyes--0-233---1552-611-
LBOR355277:1:Tno--1047-1120---0-1503-
LBRE387344:2:Tyes-----9540-----
LCAS321967:1:Tyes-----01074-----
LCHO395495:0:Tyes-3867081115691568-8491001013865
LDEL321956:0:Tyes-----11050-----
LDEL390333:0:Tyes-----10250-----
LGAS324831:0:Tyes-----12810-----
LHEL405566:0:Tyes-----12070-----
LINN272626:1:Tno-----11970---139-
LINT189518:1:Tyes--1685-2251---0-2718-
LINT267671:1:Tno--1979-1572---0-1194-
LINT363253:3:Tyes-----617---10-
LJOH257314:0:Tyes-----13750-----
LLAC272622:5:Tyes-----02073-----
LLAC272623:0:Tyes-----01906-----
LMES203120:1:Tyes-----0193-----
LMON169963:0:Tno-----11940---146-
LMON265669:0:Tyes-----11800-----
LPLA220668:0:Tyes-----12770-----
LPNE272624:0:Tno--7656000631630601762628629763
LPNE297245:1:Fno--7255120541540513729538539728
LPNE297246:1:Fyes--659-0522521491655518519656
LPNE400673:0:Tno--166-1747292801622627163
LREU557436:0:Tyes-----12490-----
LSAK314315:0:Tyes-----13450-----
LSPH444177:1:Tyes----031664077-----
LWEL386043:0:Tyes-----12290-----
LXYL281090:0:Tyes--166--0------
MABS561007:1:Tyes--321--0------
MAER449447:0:Tyes--955-0---342716051317-
MAQU351348:2:Tyes36935343720414037137383936
MAVI243243:0:Tyes--514-5130------
MBOV233413:0:Tno--0--207------
MBOV410289:0:Tno--0--207------
MCAP243233:0:Tyes-4612687181926612692722102
MCAP340047:0:Tyes------0-----
MEXT419610:0:Tyes--4082-268127512168-0--2797
MFLA265072:0:Tyes-190219031562190410-1899189818971900
MGIL350054:3:Tyes--283--0------
MHUN323259:0:Tyes------0-----
MLAB410358:0:Tyes------0-----
MLEP272631:0:Tyes--0---------
MLOT266835:2:Tyes--762-028182817-30--29
MMAG342108:0:Tyes--0-1601-3363-1731279627951730
MMAR267377:0:Tyes------0-----
MMAR394221:0:Tyes--309-013471348-2057757819
MMAR402880:1:Tyes------0-----
MMAR426368:0:Tyes------0-----
MMAR444158:0:Tyes------0-----
MMYC272632:0:Tyes------0-----
MPEN272633:0:Tyes------0-----
MPET420662:1:Tyes--236137151912621263-344201232
MSME246196:0:Tyes--0--292------
MSP164756:1:Tno--0---------
MSP164757:0:Tno--0---------
MSP189918:2:Tyes--0---------
MSP266779:3:Tyes--0-59124242423-546--547
MSP400668:0:Tyes--175098744673
MSP409:2:Tyes--1079-166301-2008--2009
MSUC221988:0:Tyes-15521551015501558155751554155515561553
MSYN262723:0:Tyes------0-----
MTBCDC:0:Tno--0--234------
MTBRV:0:Tno--0--207------
MTHE264732:0:Tyes----1193271828--40938
MTHE349307:0:Tyes------0-----
MTUB336982:0:Tno--0--199------
MTUB419947:0:Tyes--0--224------
MVAN350058:0:Tyes--0--331------
MXAN246197:0:Tyes-18722864-2867-0-127013591358-
NARO279238:0:Tyes--37-188510-1907210321021906
NEUR228410:0:Tyes-11481149791115010-1736173717381146
NEUT335283:2:Tyes-216560841842-8178188194
NFAR247156:2:Tyes--314--0------
NGON242231:0:Tyes-47447514761651165201318--153
NHAM323097:2:Tyes--1569-125001-1416--1415
NMEN122586:0:Tno-918917427916169116904260--594
NMEN122587:0:Tyes-902901466900014651718--638
NMEN272831:0:Tno-762761365760152715263640--512
NMEN374833:0:Tno-908907482906014811676--652
NMUL323848:3:Tyes-16611660198165946471970121663
NOCE323261:1:Tyes0-3063296059-33--32
NSEN222891:0:Tyes--0-212783------
NSP103690:6:Tyes--2555-1044---230404437-
NSP35761:1:Tyes--480--0---16481649-
NSP387092:0:Tyes--176-----25033-
NWIN323098:0:Tyes--1300-100101-1028--1027
OANT439375:4:Tyes--0---------
OANT439375:5:Tyes----103101-1042--1043
OCAR504832:0:Tyes--1141-149010-1528--1527
OIHE221109:0:Tyes----07042106--185-557
OTSU357244:0:Fyes--619-0---842973975-
PACN267747:0:Tyes--0-----1536---
PAER178306:0:Tyes--0---------
PAER208963:0:Tyes-7815901-5326
PAER208964:0:Tno-98071615-11131410
PARC259536:0:Tyes-10681101-5540200-7347351374494
PARS340102:0:Tyes--0---------
PATL342610:0:Tyes-2111098124673
PCAR338963:0:Tyes--4-022512250-881704705-
PCRY335284:1:Tyes--867-5290218-126712661524443
PDIS435591:0:Tyes--0-164913121541-51513391340-
PENT384676:0:Tyes--5041312-810117
PFLU205922:0:Tyes--41824177418141904189-0418741884184
PFLU216595:1:Tyes--5041312-810117
PFLU220664:0:Tyes--5041312-810117
PGIN242619:0:Tyes--725-0-1378--768769-
PHAL326442:1:Tyes132110087114563
PING357804:0:Tyes-1760176153176243540121759
PINT246198:0:Tyes------0-----
PINT246198:1:Tyes--------0983984-
PLUM243265:0:Fyes-2110087114563
PLUT319225:0:Tyes----9590--19421597467-
PMAR146891:0:Tyes--411-16741004---17430-
PMAR167539:0:Tyes--373-1664877741--17320-
PMAR167540:0:Tyes--374-1506-916--15750-
PMAR167542:0:Tyes--435-16928801000--17670-
PMAR167546:0:Tyes--375-1667----17330-
PMAR167555:0:Tyes--413-1928849905--20020-
PMAR59920:0:Tno--1544-870053--9451169-
PMAR74546:0:Tyes--368-1598954----0-
PMAR74547:0:Tyes--175-1767-601-1677-0-
PMAR93060:0:Tyes--443-17631050924--18360-
PMEN399739:0:Tyes-54031211-79106
PMOB403833:0:Tyes----------0-
PMUL272843:1:Tyes-71371417157077080711710709712
PNAP365044:8:Tyes-696736206615671568-3193246021
PPEN278197:0:Tyes-----01081-----
PPRO298386:1:Tyes----------0-
PPRO298386:2:Tyes0101131245287-9
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