CANDIDATE ID: 83

CANDIDATE ID: 83

NUMBER OF GENES: 11
AVERAGE SCORE:    9.9925078e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11283 (phnE) (b4104)
   Products of gene:
     - PHNE-MONOMER (PhnE)
     - ABC-23-CPLX (PhnC/PhnD/PhnE alkylphosphonate ABC transporter)
       Reactions:
        ATP + an alkylphosphate[periplasmic space] + H2O  ->  ADP + phosphate + an alkylphosphate[cytosol]

- EG10723 (phnN) (b4094)
   Products of gene:
     - EG10723-MONOMER (ribose 1,5-bisphosphokinase)
       Reactions:
        ribose-1,5-bisphosphate + ATP  ->  5-phospho-alpha-D-ribose 1-diphosphate + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         PWY0-661 (PRPP biosynthesis II)
         PWY-5532 (PWY-5532)

- EG10722 (phnM) (b4095)
   Products of gene:
     - EG10722-MONOMER (ATP-binding component of phosphonate transport)
       Reactions:
        EC# 4.99.1.-

- EG10720 (phnK) (b4097)
   Products of gene:
     - PHNK-MONOMER (PhnK)
       Reactions:
        EC# 4.99.1.-

- EG10719 (phnJ) (b4098)
   Products of gene:
     - EG10719-MONOMER (carbon-phosphorous lyase complex subunit)
       Reactions:
        EC# 4.99.1.-

- EG10718 (phnI) (b4099)
   Products of gene:
     - EG10718-MONOMER (carbon-phosphorus lyase complex subunit)
       Reactions:
        EC# 4.99.1.-

- EG10717 (phnH) (b4100)
   Products of gene:
     - EG10717-MONOMER (carbon-phosphorous lyase complex subunit)
       Reactions:
        EC# 4.99.1.-

- EG10716 (phnG) (b4101)
   Products of gene:
     - EG10716-MONOMER (carbon-phosphorous lyase complex subunit)
       Reactions:
        EC# 4.99.1.-

- EG10715 (phnF) (b4102)
   Products of gene:
     - EG10715-MONOMER (PhnF transcriptional regulator)

- EG10714 (phnD) (b4105)
   Products of gene:
     - PHND-MONOMER (PhnD)
     - ABC-23-CPLX (PhnC/PhnD/PhnE alkylphosphonate ABC transporter)
       Reactions:
        ATP + an alkylphosphate[periplasmic space] + H2O  ->  ADP + phosphate + an alkylphosphate[cytosol]

- EG10713 (phnC) (b4106)
   Products of gene:
     - PHNC-MONOMER (PhnC)
     - ABC-23-CPLX (PhnC/PhnD/PhnE alkylphosphonate ABC transporter)
       Reactions:
        ATP + an alkylphosphate[periplasmic space] + H2O  ->  ADP + phosphate + an alkylphosphate[cytosol]



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 85
Effective number of orgs (counting one per cluster within 468 clusters): 56

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175811
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295311
YPES386656 ncbi Yersinia pestis Pestoides F11
YPES377628 ncbi Yersinia pestis Nepal51611
YPES360102 ncbi Yersinia pestis Antiqua11
YPES349746 ncbi Yersinia pestis Angola11
YPES214092 ncbi Yersinia pestis CO9211
YPES187410 ncbi Yersinia pestis KIM 1011
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808111
XAUT78245 ncbi Xanthobacter autotrophicus Py211
VEIS391735 ncbi Verminephrobacter eiseniae EF01-211
TDEN292415 ncbi Thiobacillus denitrificans ATCC 2525910
TCRU317025 ncbi Thiomicrospira crunogena XCL-210
SSP644076 Silicibacter sp. TrichCH4B11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)9
SSP292414 ncbi Ruegeria sp. TM104011
SSON300269 ncbi Shigella sonnei Ss04611
SPRO399741 ncbi Serratia proteamaculans 56811
SMEL266834 ncbi Sinorhizobium meliloti 102111
SMED366394 ncbi Sinorhizobium medicae WSM41911
SDYS300267 ncbi Shigella dysenteriae Sd19710
SBOY300268 ncbi Shigella boydii Sb22711
RPOM246200 ncbi Ruegeria pomeroyi DSS-310
RPAL316058 ncbi Rhodopseudomonas palustris HaA211
RPAL316057 ncbi Rhodopseudomonas palustris BisB511
RPAL316056 ncbi Rhodopseudomonas palustris BisB1811
RPAL316055 ncbi Rhodopseudomonas palustris BisA5311
RPAL258594 ncbi Rhodopseudomonas palustris CGA00911
RMET266264 ncbi Ralstonia metallidurans CH3411
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 384110
RFER338969 ncbi Rhodoferax ferrireducens T11811
REUT381666 ncbi Ralstonia eutropha H1611
REUT264198 ncbi Ralstonia eutropha JMP13411
RETL347834 ncbi Rhizobium etli CFN 4211
RDEN375451 ncbi Roseobacter denitrificans OCh 11411
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC300011
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a11
PMEN399739 ncbi Pseudomonas mendocina ymp11
PING357804 ncbi Psychromonas ingrahamii 3710
PFLU216595 ncbi Pseudomonas fluorescens SBW2511
PAER208964 ncbi Pseudomonas aeruginosa PAO111
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA1411
OANT439375 ncbi Ochrobactrum anthropi ATCC 4918811
NSP103690 ncbi Nostoc sp. PCC 712011
MSP409 Methylobacterium sp.11
MPET420662 ncbi Methylibium petroleiphilum PM111
MLOT266835 ncbi Mesorhizobium loti MAFF30309911
MAQU351348 ncbi Marinobacter aquaeolei VT810
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857811
ESP42895 Enterobacter sp.11
ECOO157 ncbi Escherichia coli O157:H7 EDL93311
ECOL83334 Escherichia coli O157:H711
ECOL585397 ncbi Escherichia coli ED1a11
ECOL585057 ncbi Escherichia coli IAI3911
ECOL585056 ncbi Escherichia coli UMN02611
ECOL585055 ncbi Escherichia coli 5598911
ECOL585035 ncbi Escherichia coli S8811
ECOL585034 ncbi Escherichia coli IAI111
ECOL481805 ncbi Escherichia coli ATCC 873911
ECOL469008 ncbi Escherichia coli BL21(DE3)11
ECOL439855 ncbi Escherichia coli SMS-3-511
ECOL413997 ncbi Escherichia coli B str. REL60611
ECOL409438 ncbi Escherichia coli SE1111
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8911
ECOL362663 ncbi Escherichia coli 53611
ECOL331111 ncbi Escherichia coli E24377A11
ECOL316407 ncbi Escherichia coli K-12 substr. W311011
ECOL199310 ncbi Escherichia coli CFT07311
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10439
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G2011
CVIO243365 ncbi Chromobacterium violaceum ATCC 124729
CSP501479 Citreicella sp. SE4511
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 38210
BXEN266265 ncbi Burkholderia xenovorans LB40011
BSP376 Bradyrhizobium sp.11
BPSE320373 ncbi Burkholderia pseudomallei 66811
BPSE320372 ncbi Burkholderia pseudomallei 1710b11
BPSE272560 ncbi Burkholderia pseudomallei K9624311
BMAL320389 ncbi Burkholderia mallei NCTC 1024711
BMAL320388 ncbi Burkholderia mallei SAVP111
BMAL243160 ncbi Burkholderia mallei ATCC 2334410
BJAP224911 ncbi Bradyrhizobium japonicum USDA 11011
ACRY349163 ncbi Acidiphilium cryptum JF-59
ACAU438753 ncbi Azorhizobium caulinodans ORS 57111


Names of the homologs of the genes in the group in each of these orgs
  EG11283   EG10723   EG10722   EG10720   EG10719   EG10718   EG10717   EG10716   EG10715   EG10714   EG10713   
YPSE349747 YPSIP31758_2796YPSIP31758_3567YPSIP31758_3566YPSIP31758_3564YPSIP31758_3563YPSIP31758_3562YPSIP31758_3561YPSIP31758_3560YPSIP31758_3559YPSIP31758_2798YPSIP31758_2799
YPSE273123 YPTB1226YPTB0509YPTB0510YPTB0512YPTB0513YPTB0514YPTB0515YPTB0516YPTB0517YPTB1224YPTB1223
YPES386656 YPDSF_2510YPDSF_3274YPDSF_3273YPDSF_3271YPDSF_3270YPDSF_3269YPDSF_3268YPDSF_3267YPDSF_3266YPDSF_2512YPDSF_2513
YPES377628 YPN_2791YPN_0623YPN_0624YPN_0626YPN_0627YPN_0628YPN_0630YPN_0631YPN_0632YPN_2793YPN_2794
YPES360102 YPA_0897YPA_2966YPA_2965YPA_2963YPA_2962YPA_2961YPA_2960YPA_2959YPA_2958YPA_0895YPA_0894
YPES349746 YPANGOLA_A1342YPANGOLA_A4024YPANGOLA_A4025YPANGOLA_A4027YPANGOLA_A4028YPANGOLA_A4029YPANGOLA_A4030YPANGOLA_A4031YPANGOLA_A4032YPANGOLA_A1344YPANGOLA_A1345
YPES214092 YPO1185YPO3464YPO3463YPO3461YPO3460YPO3459YPO3458YPO3457YPO3456YPO1183YPO1182
YPES187410 Y3004Y0721Y0722Y0725Y0726Y0727Y0728Y0729Y0730Y3006Y3007
YENT393305 YE2875YE0470YE0471YE0473YE0474YE0475YE0476YE0477YE0478YE2877YE2878
XAUT78245 XAUT_1319XAUT_1309XAUT_1310XAUT_1312XAUT_1313XAUT_1314XAUT_1315XAUT_1316XAUT_1317XAUT_1321XAUT_1322
VEIS391735 VEIS_2966VEIS_2955VEIS_2963VEIS_2961VEIS_2960VEIS_2959VEIS_2958VEIS_2957VEIS_4355VEIS_2965VEIS_2964
TDEN292415 TBD_2298TBD_2289TBD_2290TBD_2292TBD_2293TBD_2294TBD_2295TBD_2301TBD_2300TBD_2299
TCRU317025 TCR_2081TCR_2089TCR_2088TCR_2086TCR_2085TCR_2084TCR_2083TCR_2078TCR_2079TCR_2080
SSP644076 SCH4B_0612SCH4B_0600SCH4B_0599SCH4B_0604SCH4B_0605SCH4B_0606SCH4B_0607SCH4B_0608SCH4B_0609SCH4B_0613SCH4B_0614
SSP321332 CYB_0161CYB_0056CYB_0168CYB_0166CYB_0165CYB_0164CYB_0163CYB_0160CYB_1467
SSP292414 TM1040_3235TM1040_3697TM1040_3695TM1040_3699TM1040_3700TM1040_3701TM1040_3702TM1040_3703TM1040_3704TM1040_3708TM1040_3709
SSON300269 SSO_4279SSO_4270SSO_4271SSO_4273SSO_4274SSO_4275SSO_4276SSO_4277SSO_4278SSO_4280SSO_4281
SPRO399741 SPRO_1413SPRO_0514SPRO_0515SPRO_0517SPRO_0518SPRO_0519SPRO_0520SPRO_0521SPRO_0522SPRO_1411SPRO_1410
SMEL266834 SMB21175SMB21170SMB21171SMB20763SMB20762SMB20761SMB20760SMB20759SMB20758SMB21176SMB21177
SMED366394 SMED_4666SMED_4662SMED_4663SMED_4231SMED_4232SMED_4233SMED_4234SMED_4235SMED_4236SMED_4667SMED_4668
SDYS300267 SDY_4113SDY_4122SDY_4121SDY_4119SDY_4118SDY_4117SDY_4116SDY_4114SDY_4112SDY_4111
SBOY300268 SBO_4129SBO_4120SBO_4121SBO_4123SBO_4124SBO_4125SBO_4126SBO_4127SBO_4128SBO_4130SBO_4131
RPOM246200 SPO_0474SPO_0476SPO_0472SPO_0471SPO_0470SPO_0469SPO_0468SPO_0467SPO_0781SPO_0780
RPAL316058 RPB_1926RPB_4096RPB_4095RPB_4093RPB_4092RPB_4091RPB_4090RPB_4089RPB_4088RPB_4085RPB_4084
RPAL316057 RPD_3823RPD_3832RPD_3831RPD_3829RPD_3828RPD_3827RPD_3826RPD_3825RPD_3824RPD_3821RPD_3820
RPAL316056 RPC_4429RPC_1279RPC_1280RPC_1282RPC_1283RPC_1284RPC_1285RPC_1286RPC_1287RPC_4431RPC_3865
RPAL316055 RPE_2049RPE_3103RPE_3104RPE_3106RPE_3107RPE_3108RPE_3109RPE_3110RPE_3111RPE_3114RPE_3115
RPAL258594 RPA1384RPA0688RPA0689RPA0691RPA0692RPA0693RPA0694RPA0695RPA0696RPA0699RPA0700
RMET266264 RMET_0773RMET_0770RMET_0760RMET_0762RMET_0763RMET_0764RMET_0765RMET_0766RMET_0767RMET_0774RMET_0775
RLEG216596 RL0163RL0164RL0173RL0174RL0175RL0176RL0177RL0178RL0168RL0170
RFER338969 RFER_0183RFER_0148RFER_0139RFER_0141RFER_0142RFER_0143RFER_0144RFER_0145RFER_0146RFER_0184RFER_0185
REUT381666 H16_B1294H16_B1291H16_B1282H16_B1284H16_B1285H16_B1286H16_B1287H16_B1288H16_B1289H16_B1295H16_B1296
REUT264198 REUT_B4179REUT_B4182REUT_B4192REUT_B4190REUT_B4189REUT_B4188REUT_B4187REUT_B4186REUT_B4185REUT_B4178REUT_B4177
RETL347834 RHE_CH00158RHE_CH00154RHE_CH00155RHE_CH00163RHE_CH00164RHE_CH00165RHE_CH00166RHE_CH00167RHE_CH00168RHE_CH00159RHE_CH00160
RDEN375451 RD1_1054RD1_2388RD1_2387RD1_2390RD1_2391RD1_2392RD1_2393RD1_2394RD1_2395RD1_2402RD1_2403
PSYR223283 PSPTO_2557PSPTO_2566PSPTO_2565PSPTO_2563PSPTO_2562PSPTO_2561PSPTO_2560PSPTO_2559PSPTO_2558PSPTO_2556PSPTO_2555
PSYR205918 PSYR_2249PSYR_2258PSYR_2257PSYR_2255PSYR_2254PSYR_2253PSYR_2252PSYR_2251PSYR_2250PSYR_2248PSYR_2247
PMEN399739 PMEN_2888PMEN_2879PMEN_2880PMEN_2882PMEN_2883PMEN_2884PMEN_2885PMEN_2886PMEN_2887PMEN_2889PMEN_2890
PING357804 PING_3693PING_3685PING_3686PING_3688PING_3689PING_3690PING_3691PING_3696PING_3695PING_3694
PFLU216595 PFLU1779PFLU1788PFLU1787PFLU1785PFLU1784PFLU1783PFLU1782PFLU1781PFLU1780PFLU1778PFLU1777
PAER208964 PA3382PA3373PA3374PA3376PA3377PA3378PA3379PA3380PA3381PA3383PA3384
PAER208963 PA14_20330PA14_20440PA14_20430PA14_20400PA14_20390PA14_20380PA14_20370PA14_20360PA14_20350PA14_20320PA14_20300
OANT439375 OANT_2184OANT_2188OANT_2366OANT_2192OANT_2193OANT_2194OANT_2195OANT_2196OANT_2197OANT_2186OANT_2187
NSP103690 ALL2227ALR0106ALL2216ALL2218ALL2219ALL2222ALL2224ALL2225ALR2226ALL2229ALL2230
MSP409 M446_2917M446_2907M446_2908M446_2910M446_2911M446_2912M446_2913M446_2914M446_2915M446_2919M446_2920
MPET420662 MPE_B0459MPE_B0648MPE_B0466MPE_B0464MPE_B0463MPE_B0462MPE_B0461MPE_B0460MPE_B0456MPE_A1250MPE_B0458
MLOT266835 MLR3356MLL9141MLL4974MLR3347MLR3346MLR9280MLR3343MLR9277MLL3341MLR3355MLR3353
MAQU351348 MAQU_4151MAQU_4044MAQU_4043MAQU_4041MAQU_4040MAQU_4039MAQU_2290MAQU_4033MAQU_3992MAQU_4035
KPNE272620 GKPORF_B4608GKPORF_B3852GKPORF_B3853GKPORF_B3854.1GKPORF_B3855GKPORF_B3856GKPORF_B3857GKPORF_B3858GKPORF_B3859GKPORF_B4610GKPORF_B4611
ESP42895 ENT638_0307ENT638_0298ENT638_0299ENT638_0301ENT638_0302ENT638_0303ENT638_0304ENT638_0305ENT638_0306ENT638_0308ENT638_0309
ECOO157 PHNEPHNNPHNMPHNKPHNJPHNIPHNHPHNGPHNFPHNDPHNC
ECOL83334 ECS5086ECS5077ECS5078ECS5080ECS5081ECS5082ECS5083ECS5084ECS5085ECS5087ECS5088
ECOL585397 ECED1_4838ECED1_4829ECED1_4830ECED1_4832ECED1_4833ECED1_4834ECED1_4835ECED1_4836ECED1_4837ECED1_4839ECED1_4840
ECOL585057 ECIAI39_4527ECIAI39_4518ECIAI39_4519ECIAI39_4521ECIAI39_4522ECIAI39_4523ECIAI39_4524ECIAI39_4525ECIAI39_4526ECIAI39_4528ECIAI39_4529
ECOL585056 ECUMN_4635ECUMN_4626ECUMN_4627ECUMN_4629ECUMN_4630ECUMN_4631ECUMN_4632ECUMN_4633ECUMN_4634ECUMN_4636ECUMN_4637
ECOL585055 EC55989_4594EC55989_4585EC55989_4586EC55989_4588EC55989_4589EC55989_4590EC55989_4591EC55989_4592EC55989_4593EC55989_4595EC55989_4596
ECOL585035 ECS88_4604ECS88_4595ECS88_4596ECS88_4598ECS88_4599ECS88_4600ECS88_4601ECS88_4602ECS88_4603ECS88_4605ECS88_4606
ECOL585034 ECIAI1_4333ECIAI1_4324ECIAI1_4325ECIAI1_4327ECIAI1_4328ECIAI1_4329ECIAI1_4330ECIAI1_4331ECIAI1_4332ECIAI1_4334ECIAI1_4335
ECOL481805 ECOLC_3923ECOLC_3932ECOLC_3931ECOLC_3929ECOLC_3928ECOLC_3927ECOLC_3926ECOLC_3925ECOLC_3924ECOLC_3922ECOLC_3921
ECOL469008 ECBD_3927ECBD_3936ECBD_3935ECBD_3933ECBD_3932ECBD_3931ECBD_3930ECBD_3929ECBD_3928ECBD_3926ECBD_3925
ECOL439855 ECSMS35_4569ECSMS35_4560ECSMS35_4561ECSMS35_4563ECSMS35_4564ECSMS35_4565ECSMS35_4566ECSMS35_4567ECSMS35_4568ECSMS35_4570ECSMS35_4571
ECOL413997 ECB_03975ECB_03966ECB_03967ECB_03969ECB_03970ECB_03971ECB_03972ECB_03973ECB_03974ECB_03976ECB_03977
ECOL409438 ECSE_4402ECSE_4393ECSE_4394ECSE_4396ECSE_4397ECSE_4398ECSE_4399ECSE_4400ECSE_4401ECSE_4403ECSE_4404
ECOL405955 APECO1_2347APECO1_2356APECO1_2355APECO1_2353APECO1_2351APECO1_2350APECO1_2349APECO1_2348APECO1_2346APECO1_2345
ECOL364106 UTI89_C4698UTI89_C4689UTI89_C4690UTI89_C4692UTI89_C4693UTI89_C4694UTI89_C4695UTI89_C4696UTI89_C4697UTI89_C4699UTI89_C4700
ECOL362663 ECP_4346ECP_4337ECP_4338ECP_4340ECP_4341ECP_4342ECP_4343ECP_4344ECP_4345ECP_4347ECP_4348
ECOL331111 ECE24377A_4657ECE24377A_4648ECE24377A_4649ECE24377A_4651ECE24377A_4652ECE24377A_4653ECE24377A_4654ECE24377A_4655ECE24377A_4656ECE24377A_4658ECE24377A_4659
ECOL316407 ECK4097:JW4065:B4104ECK4087:JW4055:B4094ECK4088:JW4056:B4095ECK4090:JW5727:B4097ECK4091:JW4059:B4098ECK4092:JW4060:B4099ECK4093:JW4061:B4100ECK4094:JW4062:B4101ECK4095:JW4063:B4102ECK4098:JW4066:B4105ECK4099:JW4067:B4106
ECOL199310 C5109C4473C5101C5103C5104C5105C5106C5107C5108C5110C5111
ECAR218491 ECA0497ECA0496ECA0494ECA0493ECA0492ECA0491ECA0490ECA0348ECA2153
DDES207559 DDE_3725DDE_3336DDE_3334DDE_3332DDE_3331DDE_3330DDE_3329DDE_3328DDE_3327DDE_3325DDE_3324
CVIO243365 CV_1849CV_1840CV_1842CV_1843CV_1844CV_1845CV_1846CV_1847CV_2981
CSP501479 CSE45_5013CSE45_2447CSE45_2446CSE45_2450CSE45_2451CSE45_2452CSE45_2453CSE45_2454CSE45_2455CSE45_2487CSE45_2488
CMIC443906 CMM_0372CMM_0373CMM_0376CMM_0377CMM_0378CMM_0379CMM_0380CMM_0789CMM_0367CMM_0368
BXEN266265 BXE_B0837BXE_B2176BXE_B2185BXE_B2183BXE_B2182BXE_B2181BXE_B2180BXE_B2179BXE_B2178BXE_B0838BXE_B0839
BSP376 BRADO5363BRADO5349BRADO5350BRADO5352BRADO5353BRADO5354BRADO5355BRADO5356BRADO5357BRADO5365BRADO5366
BPSE320373 BURPS668_3302BURPS668_3315BURPS668_3305BURPS668_3307BURPS668_3308BURPS668_3309BURPS668_3310BURPS668_3311BURPS668_3313BURPS668_3303BURPS668_3304
BPSE320372 BURPS1710B_A3622BURPS1710B_A3634BURPS1710B_A3625BURPS1710B_A3627BURPS1710B_A3628BURPS1710B_A3629BURPS1710B_A3630BURPS1710B_A3631BURPS1710B_A3632BURPS1710B_A3623BURPS1710B_A3624
BPSE272560 BPSL2848BPSL2860BPSL2851BPSL2853BPSL2854BPSL2855BPSL2856BPSL2857BPSL2858BPSL2849BPSL2850
BMAL320389 BMA10247_2596BMA10247_2583BMA10247_2592BMA10247_2590BMA10247_2589BMA10247_2588BMA10247_2587BMA10247_2586BMA10247_2585BMA10247_2594BMA10247_2593
BMAL320388 BMASAVP1_A0326BMASAVP1_A0313BMASAVP1_A0322BMASAVP1_A0320BMASAVP1_A0319BMASAVP1_A0318BMASAVP1_A0317BMASAVP1_A0316BMASAVP1_A0315BMASAVP1_A0324BMASAVP1_A0323
BMAL243160 BMA_2409BMA_2397BMA_2406BMA_2404BMA_2403BMA_2402BMA_2401BMA_2400BMA_2399BMA_2407
BJAP224911 BLL7944BLR1228BLR1227BLR1225BLR1224BLR1223BLR1222BLR1221BLL1220BLL7946BLL7947
ACRY349163 ACRY_2919ACRY_2917ACRY_2915ACRY_2914ACRY_2913ACRY_2912ACRY_2911ACRY_2920ACRY_1137
ACAU438753 AZC_1055AZC_3400AZC_3399AZC_3397AZC_3395AZC_3394AZC_3393AZC_3392AZC_3391AZC_1057AZC_1058


Organism features enriched in list (features available for 79 out of the 85 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0003582392
Arrangment:Singles 0.007954948286
Disease:Bubonic_plague 5.230e-666
Disease:Gastroenteritis 0.0034635613
Disease:Glanders_and_pneumonia 0.002406833
Disease:Melioidosis 0.002406833
Disease:Opportunistic_infections 0.000040955
Disease:Urinary_tract_infection 0.008365834
Endospores:No 0.002577218211
GC_Content_Range4:40-60 0.000363044224
GC_Content_Range4:60-100 0.000024535145
GC_Content_Range7:50-60 3.616e-732107
GC_Content_Range7:60-70 0.000010334134
Genome_Size_Range5:2-4 5.683e-96197
Genome_Size_Range5:4-6 3.497e-1354184
Genome_Size_Range5:6-10 1.128e-61947
Genome_Size_Range9:2-3 6.237e-63120
Genome_Size_Range9:3-4 0.0024887377
Genome_Size_Range9:4-5 0.00005182696
Genome_Size_Range9:5-6 6.441e-72888
Genome_Size_Range9:6-8 8.324e-71738
Gram_Stain:Gram_Neg 1.427e-1373333
Gram_Stain:Gram_Pos 2.679e-101150
Habitat:Aquatic 0.0051309591
Habitat:Multiple 2.515e-846178
Motility:No 1.899e-65151
Motility:Yes 2.449e-757267
Optimal_temp.:25-30 0.00003591019
Optimal_temp.:28-30 0.007274847
Optimal_temp.:30 0.0076780615
Oxygen_Req:Anaerobic 0.00001412102
Oxygen_Req:Facultative 1.815e-748201
Pathogenic_in:Rodent 0.007274847
Shape:Coccus 0.0000370182
Shape:Rod 2.574e-1172347
Temp._range:Mesophilic 0.001854473473



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ORGANISMS CONTAINING AT MOST 2 GENES FROM THE GROUP:

Total number of orgs: 398
Effective number of orgs (counting one per cluster within 468 clusters): 315

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A1
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110181
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103311
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae1
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80041
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339131
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3061
WSUC273121 ncbi Wolinella succinogenes DSM 17402
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
VVUL216895 ncbi Vibrio vulnificus CMCP62
VVUL196600 ncbi Vibrio vulnificus YJ0162
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106332
VFIS312309 ncbi Vibrio fischeri ES1141
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP1755 Thermoanaerobacter sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51592
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB82
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4402
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP94122 ncbi Shewanella sp. ANA-32
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93112
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321327 ncbi Synechococcus sp. JA-3-3Ab2
SSP1148 ncbi Synechocystis sp. PCC 68032
SSP1131 Synechococcus sp. CC96052
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB32
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R62
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae2
SPEA398579 ncbi Shewanella pealeana ATCC 7003452
SONE211586 ncbi Shewanella oneidensis MR-11
SMUT210007 ncbi Streptococcus mutans UA1592
SMAR399550 ncbi Staphylothermus marinus F11
SLOI323850 ncbi Shewanella loihica PV-42
SHAL458817 ncbi Shewanella halifaxensis HAW-EB42
SGOR29390 Streptococcus gordonii Challis1
SGLO343509 ncbi Sodalis glossinidius morsitans2
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SDEN318161 ncbi Shewanella denitrificans OS2172
SDEG203122 ncbi Saccharophagus degradans 2-402
SBAL402882 ncbi Shewanella baltica OS1851
SBAL399599 ncbi Shewanella baltica OS1951
SAUR426430 ncbi Staphylococcus aureus aureus Newman2
SARE391037 ncbi Salinispora arenicola CNS-2052
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332092
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111702
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139412
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI2
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257452
PMUL272843 ncbi Pasteurella multocida multocida Pm701
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92152
PMAR74547 ncbi Prochlorococcus marinus MIT 93132
PMAR74546 ncbi Prochlorococcus marinus MIT 93122
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167542 ncbi Prochlorococcus marinus MIT 95152
PMAR167540 Prochlorococcus marinus pastoris MED4ax2
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96012
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO12
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1251
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PFLU220664 ncbi Pseudomonas fluorescens Pf-52
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c1
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-41
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21602
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534421
NMEN272831 ncbi Neisseria meningitidis FAM181
NMEN122587 ncbi Neisseria meningitidis Z24911
NMEN122586 ncbi Neisseria meningitidis MC581
NHAM323097 ncbi Nitrobacter hamburgensis X141
NGON242231 ncbi Neisseria gonorrhoeae FA 10901
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124442
MXAN246197 ncbi Myxococcus xanthus DK 16221
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E1
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG12
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-12
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK2
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L12
MFLA265072 ncbi Methylobacillus flagellatus KT1
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273432
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8432
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199772
LXYL281090 ncbi Leifsonia xyli xyli CTCB072
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53342
LSAK314315 ncbi Lactobacillus sakei sakei 23K2
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris2
LPNE297245 ncbi Legionella pneumophila Lens2
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LMON265669 ncbi Listeria monocytogenes 4b F23652
LMON169963 ncbi Listeria monocytogenes EGD-e2
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82932
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112622
LBRE387344 ncbi Lactobacillus brevis ATCC 3672
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HSP64091 ncbi Halobacterium sp. NRC-12
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R12
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMOD498761 ncbi Heliobacterium modesticaldum Ice12
HINF71421 ncbi Haemophilus influenzae Rd KW201
HINF374930 ncbi Haemophilus influenzae PittEE1
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP1
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GURA351605 ncbi Geobacter uraniireducens Rf41
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-22
GSUL243231 ncbi Geobacter sulfurreducens PCA2
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GKAU235909 ncbi Geobacillus kaustophilus HTA4262
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH12
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec1
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B12
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5832
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R12
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H2
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg2
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT2
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC31964 ncbi Clavibacter michiganensis sepedonicus2
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4112
CJAP155077 Cellvibrio japonicus1
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3142
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B2
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BTHA271848 ncbi Burkholderia thailandensis E2642
BSUB ncbi Bacillus subtilis subtilis 1682
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0322
BLON206672 ncbi Bifidobacterium longum NCC27051
BLIC279010 ncbi Bacillus licheniformis ATCC 145802
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1002
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB422
BAMB398577 ncbi Burkholderia ambifaria MC40-62
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN12
ASP62977 ncbi Acinetobacter sp. ADP12
ASP62928 ncbi Azoarcus sp. BH722
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL031
APLE416269 ncbi Actinobacillus pleuropneumoniae L201
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs2
ANAE240017 Actinomyces oris MG12
AMAR329726 ncbi Acaryochloris marina MBIC110172
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43042
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C2
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK21
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  EG11283   EG10723   EG10722   EG10720   EG10719   EG10718   EG10717   EG10716   EG10715   EG10714   EG10713   
ZMOB264203
XORY360094 XOOORF_0973
XORY342109 XOO3699
XORY291331 XOO3920
XFAS405440
XFAS183190
XFAS160492
XCAM487884 XCC-B100_0783
XCAM316273 XCAORF_3754
XCAM314565 XC_0750
XCAM190485 XCC3414
XAXO190486 XAC0711
WSUC273121 WS1549WS1550
WPIP955 WD_0439
WPIP80849 WB_0879
VVUL216895 VV2_0794VV1_2662
VVUL196600 VVA1258VV1629
VPAR223926 VP0161VPA1495
VFIS312309 VFA0393
UURE95667
UURE95664
UPAR505682
UMET351160 LRC381
TWHI218496 TW0139
TWHI203267 TW142
TVOL273116
TTHE300852 TTHA1159
TTHE262724 TT_C0795
TTEN273068 TTE1511
TSP1755 TETH514_1761
TROS309801 TRD_1629TRD_0272
TPSE340099 TETH39_1324
TPEN368408
TPAL243276
TMAR243274 TM_0498TM_0591
TKOD69014
TELO197221 TLL0054
TDEN326298
TDEN243275 TDE_0928
TACI273075
SWOL335541
STRO369723 STROP_3799STROP_2009
STOK273063
STHE322159 STER_0652
STHE299768 STR0606
STHE264199 STU0606
SSUI391296
SSUI391295 SSU05_0447
SSP94122 SHEWANA3_3810SHEWANA3_2014
SSP84588 SYNW1170OR3425
SSP64471 GSYN1786GSYN1285
SSP387093
SSP321327 CYA_2697CYA_1893
SSP1148 SLR1123SLL1927
SSP1131 SYNCC9605_1294SYNCC9605_1097
SSOL273057
SSED425104 SSED_0336SSED_1792
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214 SPH_1563
SPNE487213
SPNE171101 SPR1301SPR0622
SPNE170187 SPN05206
SPNE1313 SPJ_1345SPJ_0649
SPEA398579 SPEA_3877SPEA_1747
SONE211586 SO_0361
SMUT210007 SMU_258SMU_241C
SMAR399550 SMAR_1329
SLOI323850 SHEW_3497SHEW_2347
SHAL458817 SHAL_0392SHAL_2530
SGOR29390 SGO_1121
SGLO343509 SG0948SG1855
SFUM335543 SFUM_3630
SDEN318161 SDEN_3433SDEN_1899
SDEG203122 SDE_3695SDE_2031
SBAL402882 SHEW185_0353
SBAL399599 SBAL195_0360
SAUR426430 NWMN_0085NWMN_0086
SARE391037 SARE_4179SARE_2634
SALA317655
SAGA211110 GBS0147
SAGA208435 SAG_0151
SAGA205921 SAK_0209
SACI56780 SYN_01279
SACI330779
RTYP257363 RT0752
RSPH349101
RSPH272943
RSAL288705 RSAL33209_0395RSAL33209_1531
RRUB269796 RRU_A1037RRU_A2011
RRIC452659
RRIC392021
RPRO272947 RP765
RMAS416276
RFEL315456
RCON272944
RCAS383372 RCAS_1063RCAS_1457
RCAN293613
RBEL391896 A1I_07245
RBEL336407 RBE_0134
RALB246199
RAKA293614
PTOR263820
PTHE370438 PTH_1485PTH_0038
PSP312153 PNUC_1078
PSP117 RB7090
PRUM264731
PPEN278197 PEPE_0399PEPE_1527
PMUL272843 PM0922
PMOB403833 PMOB_1578
PMAR93060 P9215_05471P9215_07581
PMAR74547 PMT0780PMT0893
PMAR74546 PMT9312_0467PMT9312_0673
PMAR59920 PMN2A_0105
PMAR167555 NATL1_07301
PMAR167542 P9515ORF_0565P9515ORF_0784
PMAR167540 PMM0467PMM0673
PMAR167539 PRO_1019
PMAR146891 A9601_05231A9601_07281
PLUT319225
PLUM243265 PLU0274PLU4486
PISL384616
PINT246198
PHOR70601
PHAL326442 PSHAA2790
PGIN242619
PFUR186497
PFLU220664 PFL_4028PFL_4935
PDIS435591 BDI_0156
PCRY335284 PCRYO_2003
PCAR338963
PATL342610 PATL_1536
PAST100379 PAM192
PARS340102
PARC259536 PSYC_1723
PAER178306
PACN267747 PPA0676
PABY272844 PAB0094
OTSU357244
NWIN323098 NWI_0292
NSP387092
NSP35761 NOCA_3959
NSEN222891
NPHA348780 NP1752ANP6124A
NOCE323261
NMUL323848
NMEN374833 NMCC_1571
NMEN272831 NMC1579
NMEN122587 NMA1919
NMEN122586 NMB_1661
NHAM323097 NHAM_0382
NGON242231 NGO1310
NEUT335283
NEUR228410
NARO279238 SARO_1551SARO_1549
MXAN246197 MXAN_6161
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSUC221988 MS1738
MSTA339860
MSP189918
MSP164756
MSED399549 MSED_2207
MPUL272635
MPNE272634
MPEN272633
MMYC272632 MSC_0077MSC_0078
MMOB267748
MMAZ192952 MM2570
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108 AMB4386AMB1105
MLEP272631
MLAB410358
MKAN190192
MJAN243232 MJ_0796
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_2603MFLV_3165
MGEN243273
MFLO265311 MFL571MFL572
MFLA265072 MFLA_0048
MEXT419610
MCAP340047 MCAP_0827MCAP_0826
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797 MBAR_A2029
MAVI243243
MART243272
MAER449447 MAE_53170MAE_36170
MAEO419665
MACE188937
MABS561007 MAB_0953MAB_4237C
LXYL281090 LXX08560LXX24260
LWEL386043 LWE2210LWE1272
LSAK314315 LSA0705LSA1587
LREU557436
LPNE400673 LPC_2602
LPNE297246 LPP1992LPP0747
LPNE297245 LPL1987LPL0728
LPNE272624 LPG0692
LMON265669 LMOF2365_2226LMOF2365_1270
LMON169963 LMO2193LMO1253
LMES203120 LEUM_1929LEUM_1936
LINT363253
LINT267671
LINT189518
LINN272626 LIN2297LIN1221
LBRE387344 LVIS_1766LVIS_0540
LBOR355277
LBOR355276
LBIF456481
LBIF355278
ILOI283942
IHOS453591
HSP64091 VNG2365GVNG2085G
HSOM228400
HSOM205914
HSAL478009 OE4317FOE3908R
HPYL85963
HPYL357544
HPY
HMUK485914 HMUK_0537
HMOD498761 HM1_2127HM1_1607
HINF71421 HI_1743
HINF374930 CGSHIEE_03320
HINF281310 NTHI2054
HHEP235279
HHAL349124
HDUC233412 HD_0316
HBUT415426 HBUT_0687
HAUR316274 HAUR_1226
HACI382638
GURA351605 GURA_0350
GTHE420246 GTNG_0477GTNG_2203
GSUL243231 GSU_2623GSU_0798
GOXY290633
GMET269799
GKAU235909 GK0814GK2275
GFOR411154
GBET391165 GBCGDNIH1_1119GBCGDNIH1_1987
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374 FSU0025
FSP1855 FRANEAN1_3476
FRANT
FPHI484022
FNOD381764 FNOD_1677FNOD_1566
FMAG334413 FMG_1248
FJOH376686
FALN326424 FRAAL0336
ERUM302409
ERUM254945
ELIT314225
EFAE226185 EF_3034EF_0246
ECHA205920
ECAN269484
DSP255470
DSP216389
DRAD243230 DR_2289DR_A0211
DPSY177439
DOLE96561 DOLE_1910
DNOD246195 DNO_0645
DGEO319795 DGEO_2760
DETH243164 DET_0035
CVES412965 COSY_0513
CTRA471473
CTRA471472
CTET212717 CTC_00297
CTEP194439
CSUL444179
CRUT413404
CPSY167879 CPS_4971CPS_3309
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_1451CPHY_1449
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415 NT01CX_1743NT01CX_0607
CMUR243161
CMIC31964 CMS2213CMS2385
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537 JK1838JK0654
CJAP155077 CJA_2054
CHYD246194 CHY_1127
CHUT269798
CHOM360107 CHAB381_1251
CFET360106 CFF8240_1436
CFEL264202
CEFF196164 CE2725CE1844
CDIP257309 DIP2241
CDES477974
CCUR360105 CCV52592_1256
CCON360104 CCC13826_0545
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232 CLM_2206
CBOT515621 CLJ_B2194
CBOT508765 CLL_A1211CLL_A3309
CBOT498213 CLD_2636
CBOT441772 CLI_2055
CBOT441771 CLC_1935
CBOT441770 CLB_1929
CBOT36826 CBO1989
CBLO291272
CBLO203907
CBEI290402 CBEI_2394
CACE272562 CAC3502
CABO218497
BTUR314724
BTRI382640
BTHE226186
BTHA271848 BTH_I1586BTH_I0754
BSUB BSU11460BSU40130
BSP107806 BU434
BQUI283165
BPUM315750 BPUM_1073BPUM_3140
BLON206672 BL1120
BLIC279010 BL03044BL00086
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBAC360095 BARBAKC583_0595
BBAC264462 BD0859BD3104
BAPH372461
BAPH198804 BUSG419
BAMY326423 RBAM_011460RBAM_019370
BAMB398577 BAMMC406_0871BAMMC406_3826
BAFZ390236
AYEL322098
AURANTIMONAS
ASP76114 EBA3494EBA6693
ASP62977 ACIAD3324ACIAD3488
ASP62928 AZO3953AZO1548
APLE434271 APJL_0264
APLE416269 APL_0256
APHA212042
APER272557
AORE350688 CLOS_1344CLOS_0724
ANAE240017 ANA_1297ANA_1042
AMAR329726 AM1_3719AM1_3720
AMAR234826
ALAI441768 ACL_1250
AFUL224325 AF_1771AF_1469
ADEH290397 ADEH_0457ADEH_0455
ACEL351607 ACEL_0574
ABUT367737
ABOR393595 ABO_1721
ABAC204669
AAEO224324


Organism features enriched in list (features available for 376 out of the 398 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 7.631e-6217
Arrangment:Filaments 0.0005240110
Arrangment:Pairs 0.000181956112
Disease:Wide_range_of_infections 0.00761741111
Endospores:No 0.0001997155211
GC_Content_Range4:0-40 3.290e-11173213
GC_Content_Range4:60-100 1.140e-963145
GC_Content_Range7:0-30 1.573e-74547
GC_Content_Range7:30-40 0.0000183128166
GC_Content_Range7:40-50 0.001059889117
GC_Content_Range7:50-60 0.000014650107
GC_Content_Range7:60-70 5.173e-860134
Genome_Size_Range5:0-2 2.258e-25148155
Genome_Size_Range5:2-4 0.0001613146197
Genome_Size_Range5:4-6 6.322e-1872184
Genome_Size_Range5:6-10 2.872e-101047
Genome_Size_Range9:0-1 5.096e-62727
Genome_Size_Range9:1-2 6.709e-19121128
Genome_Size_Range9:2-3 0.000117694120
Genome_Size_Range9:4-5 3.175e-83896
Genome_Size_Range9:5-6 5.153e-83488
Genome_Size_Range9:6-8 1.652e-8838
Habitat:Host-associated 0.0042037146206
Habitat:Multiple 3.058e-788178
Habitat:Specialized 0.00115594453
Motility:No 0.0006093113151
Motility:Yes 0.0000210149267
Optimal_temp.:25-35 0.0050934414
Optimal_temp.:30 0.0099898515
Optimal_temp.:30-37 0.0011773518
Optimal_temp.:37 0.008461078106
Oxygen_Req:Anaerobic 1.022e-1092102
Oxygen_Req:Facultative 7.143e-1096201
Shape:Irregular_coccus 0.00050661717
Shape:Rod 2.328e-11187347
Shape:Sphere 0.00223681819
Shape:Spiral 3.925e-63334
Temp._range:Hyperthermophilic 0.00278852123
Temp._range:Mesophilic 0.0001194289473
Temp._range:Thermophilic 0.00290713035



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 15
Effective number of orgs (counting one per cluster within 468 clusters): 15

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
BXEN266265 ncbi Burkholderia xenovorans LB400 0.0000788113211
NSP103690 ncbi Nostoc sp. PCC 7120 0.0001705121411
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 382 0.000322591010
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G20 0.0003694130211
RDEN375451 ncbi Roseobacter denitrificans OCh 114 0.0013789146711
SSP292414 ncbi Ruegeria sp. TM1040 0.0016373149011
RPAL316057 ncbi Rhodopseudomonas palustris BisB5 0.0021775152911
SSP644076 Silicibacter sp. TrichCH4B 0.0026043155411
RPAL316058 ncbi Rhodopseudomonas palustris HaA2 0.0030627157711
RPAL316055 ncbi Rhodopseudomonas palustris BisA53 0.0032386158511
XAUT78245 ncbi Xanthobacter autotrophicus Py2 0.0043810162911
RPAL258594 ncbi Rhodopseudomonas palustris CGA009 0.0051827165411
CSP501479 Citreicella sp. SE45 0.0067023169311
RPAL316056 ncbi Rhodopseudomonas palustris BisB18 0.0068345169611
VEIS391735 ncbi Verminephrobacter eiseniae EF01-2 0.0083463172711


Names of the homologs of the genes in the group in each of these orgs
  EG11283   EG10723   EG10722   EG10720   EG10719   EG10718   EG10717   EG10716   EG10715   EG10714   EG10713   
BXEN266265 BXE_B0837BXE_B2176BXE_B2185BXE_B2183BXE_B2182BXE_B2181BXE_B2180BXE_B2179BXE_B2178BXE_B0838BXE_B0839
NSP103690 ALL2227ALR0106ALL2216ALL2218ALL2219ALL2222ALL2224ALL2225ALR2226ALL2229ALL2230
CMIC443906 CMM_0372CMM_0373CMM_0376CMM_0377CMM_0378CMM_0379CMM_0380CMM_0789CMM_0367CMM_0368
DDES207559 DDE_3725DDE_3336DDE_3334DDE_3332DDE_3331DDE_3330DDE_3329DDE_3328DDE_3327DDE_3325DDE_3324
RDEN375451 RD1_1054RD1_2388RD1_2387RD1_2390RD1_2391RD1_2392RD1_2393RD1_2394RD1_2395RD1_2402RD1_2403
SSP292414 TM1040_3235TM1040_3697TM1040_3695TM1040_3699TM1040_3700TM1040_3701TM1040_3702TM1040_3703TM1040_3704TM1040_3708TM1040_3709
RPAL316057 RPD_3823RPD_3832RPD_3831RPD_3829RPD_3828RPD_3827RPD_3826RPD_3825RPD_3824RPD_3821RPD_3820
SSP644076 SCH4B_0612SCH4B_0600SCH4B_0599SCH4B_0604SCH4B_0605SCH4B_0606SCH4B_0607SCH4B_0608SCH4B_0609SCH4B_0613SCH4B_0614
RPAL316058 RPB_1926RPB_4096RPB_4095RPB_4093RPB_4092RPB_4091RPB_4090RPB_4089RPB_4088RPB_4085RPB_4084
RPAL316055 RPE_2049RPE_3103RPE_3104RPE_3106RPE_3107RPE_3108RPE_3109RPE_3110RPE_3111RPE_3114RPE_3115
XAUT78245 XAUT_1319XAUT_1309XAUT_1310XAUT_1312XAUT_1313XAUT_1314XAUT_1315XAUT_1316XAUT_1317XAUT_1321XAUT_1322
RPAL258594 RPA1384RPA0688RPA0689RPA0691RPA0692RPA0693RPA0694RPA0695RPA0696RPA0699RPA0700
CSP501479 CSE45_5013CSE45_2447CSE45_2446CSE45_2450CSE45_2451CSE45_2452CSE45_2453CSE45_2454CSE45_2455CSE45_2487CSE45_2488
RPAL316056 RPC_4429RPC_1279RPC_1280RPC_1282RPC_1283RPC_1284RPC_1285RPC_1286RPC_1287RPC_4431RPC_3865
VEIS391735 VEIS_2966VEIS_2955VEIS_2963VEIS_2961VEIS_2960VEIS_2959VEIS_2958VEIS_2957VEIS_4355VEIS_2965VEIS_2964


Organism features enriched in list (features available for 13 out of the 15 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
GC_Content_Range4:60-100 0.000090910145
GC_Content_Range7:60-70 0.00038649134
Genome_Size_Range5:4-6 0.00450339184
Genome_Size_Range9:5-6 0.0059478688
Habitat:Multiple 4.641e-612178
Motility:Yes 0.003943611267
Optimal_temp.:25-30 0.0004585419
Pathogenic_in:No 0.000774211226



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195750.4880
GALACTITOLCAT-PWY (galactitol degradation)73430.4804
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138590.4524
PWY-46 (putrescine biosynthesis III)138590.4524
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156630.4503
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135580.4493
GLYCOCAT-PWY (glycogen degradation I)246800.4442
GALACTCAT-PWY (D-galactonate degradation)104490.4365
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176660.4361
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149600.4349
GALACTARDEG-PWY (D-galactarate degradation I)151600.4299
PWY0-981 (taurine degradation IV)106490.4298
PWY-5148 (acyl-CoA hydrolysis)227750.4278
P344-PWY (acrylonitrile degradation)210700.4090
HCAMHPDEG-PWY (3-phenylpropionate and 3-(3-hydroxyphenyl)propionate degradation to 2-oxopent-4-enoate)22190.4053



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10723   EG10722   EG10720   EG10719   EG10718   EG10717   EG10716   EG10715   EG10714   EG10713   
EG112830.9985150.9988750.9986610.9989150.9989580.9990060.9987070.9989160.9997180.999715
EG107230.9995750.9993790.9994030.9993860.999370.9993020.9992660.998670.998661
EG107220.9995810.9995370.9995080.9994430.999310.9992840.999070.99908
EG107200.9996810.9996210.9995610.9994240.9991910.9988340.998856
EG107190.9996720.9995950.9994550.9994120.9990610.999086
EG107180.9996570.9995220.999450.9990840.999103
EG107170.9995860.9995130.9991520.999131
EG107160.9995380.9990070.998953
EG107150.9991150.998931
EG107140.999791
EG10713



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PAIRWISE BLAST SCORES:

  EG11283   EG10723   EG10722   EG10720   EG10719   EG10718   EG10717   EG10716   EG10715   EG10714   EG10713   
EG112830.0f0----------
EG10723-0.0f0---------
EG10722--0.0f0--------
EG10720---0.0f0-------
EG10719----0.0f0------
EG10718-----0.0f0-----
EG10717------0.0f0----
EG10716-------0.0f0---
EG10715--------0.0f0--
EG10714---------0.0f0-
EG10713----------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-23-CPLX (PhnC/PhnD/PhnE alkylphosphonate ABC transporter) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.273, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9992 0.9987 EG10714 (phnD) PHND-MONOMER (PhnD)
   *in cand* 0.9991 0.9985 EG11283 (phnE) PHNE-MONOMER (PhnE)
   *in cand* 0.9992 0.9987 EG10713 (phnC) PHNC-MONOMER (PhnC)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9989 EG10715 (phnF) EG10715-MONOMER (PhnF transcriptional regulator)
   *in cand* 0.9993 0.9987 EG10716 (phnG) EG10716-MONOMER (carbon-phosphorous lyase complex subunit)
   *in cand* 0.9995 0.9990 EG10717 (phnH) EG10717-MONOMER (carbon-phosphorous lyase complex subunit)
   *in cand* 0.9995 0.9990 EG10718 (phnI) EG10718-MONOMER (carbon-phosphorus lyase complex subunit)
   *in cand* 0.9994 0.9989 EG10719 (phnJ) EG10719-MONOMER (carbon-phosphorous lyase complex subunit)
   *in cand* 0.9993 0.9987 EG10720 (phnK) PHNK-MONOMER (PhnK)
   *in cand* 0.9994 0.9989 EG10722 (phnM) EG10722-MONOMER (ATP-binding component of phosphonate transport)
   *in cand* 0.9992 0.9985 EG10723 (phnN) EG10723-MONOMER (ribose 1,5-bisphosphokinase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10713 EG10714 EG10715 EG10716 EG10717 EG10718 EG10719 EG10720 EG10722 EG10723 EG11283 (centered at EG10717)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11283   EG10723   EG10722   EG10720   EG10719   EG10718   EG10717   EG10716   EG10715   EG10714   EG10713   
162/623225/623109/623243/62393/62394/62391/62381/623220/623206/623256/623
AAUR290340:2:Tyes0--2180-----21
AAVE397945:0:Tyes-3228------1877-0
ABAU360910:0:Tyes-772-1625----0--
ABOR393595:0:Tyes---------0-
ACAU438753:0:Tyes02369236823662364236323622361236023
ACEL351607:0:Tyes--------0--
ACRY349163:8:Tyes-17981796179417931792179117901799-0
ADEH290397:0:Tyes---------20
AEHR187272:0:Tyes-303-130------0
AFER243159:0:Tyes-0245678---
AFUL224325:0:Tyes---300------0
AHYD196024:0:Tyes3949--3228----039472524
ALAI441768:0:Tyes----------0
AMAR329726:9:Tyes---------01
AMET293826:0:Tyes794-633632631630629--7950
ANAE240017:0:Tyes--------232-0
AORE350688:0:Tyes---611------0
APLE416269:0:Tyes-0---------
APLE434271:0:Tno-0---------
ASAL382245:5:Tyes680------408870549
ASP1667:3:Tyes---0----2499-1781
ASP232721:2:Tyes-58-0----1839770-
ASP62928:0:Tyes-2432------0--
ASP62977:0:Tyes-0--------148
ASP76114:2:Tyes-0------1892--
AVAR240292:3:Tyes01307-1881-----41391
BABO262698:0:Tno---0-------
BABO262698:1:Tno-2160-----217-1028
BAMB339670:1:Tno----------0
BAMB339670:2:Tno--------0--
BAMB339670:3:Tno-0---------
BAMB398577:2:Tno--------0--
BAMB398577:3:Tno-0---------
BAMY326423:0:Tyes---0----791--
BANT260799:0:Tno2353--0----283723552354
BANT261594:2:Tno2327--0----282323292328
BANT568206:2:Tyes2--2486----334901
BANT592021:2:Tno2479--0----299224812480
BAPH198804:0:Tyes-0---------
BBAC264462:0:Tyes---------02088
BBAC360095:0:Tyes----------0
BBRO257310:0:Tyes02039-3109----18921
BCAN483179:0:Tno---0-------
BCAN483179:1:Tno-2380-----239-1088
BCEN331271:0:Tno----------0
BCEN331271:2:Tno-0-768----1423--
BCEN331272:1:Tyes---0------47
BCEN331272:3:Tyes-0------1530--
BCER226900:1:Tyes2448--0----280724502449
BCER288681:0:Tno2294--0----271022962295
BCER315749:1:Tyes1351--0----175213531352
BCER405917:1:Tyes2269--0----265422712270
BCER572264:1:Tno2530--0----290225322531
BCLA66692:0:Tyes694--0----710696695
BHAL272558:0:Tyes2613--3285----04921
BJAP224911:0:Fyes67678754321067696770
BLIC279010:0:Tyes---0----3345--
BLON206672:0:Tyes----------0
BMAL243160:1:Tno1109765432-10
BMAL320388:1:Tno13097654321110
BMAL320389:1:Tyes13097654321110
BMEL224914:0:Tno---0-------
BMEL224914:1:Tno-7961028-----795-0
BMEL359391:0:Tno---0-------
BMEL359391:1:Tno-2100-----211-985
BOVI236:0:Tyes---0-------
BOVI236:1:Tyes-1890-----190--
BPAR257311:0:Tno02045-2610----7321
BPER257313:0:Tyes17190-------1721-
BPET94624:0:Tyes17510-841-----17491750
BPSE272560:1:Tyes0123567891012
BPSE320372:1:Tno0123567891012
BPSE320373:1:Tno0133567891112
BPUM315750:0:Tyes---0----2068--
BSP107806:2:Tyes-0---------
BSP36773:1:Tyes----------0
BSP36773:2:Tyes-0-909----1796--
BSP376:0:Tyes14013456781617
BSUB:0:Tyes---0----3009--
BSUI204722:0:Tyes---0-------
BSUI204722:1:Tyes-2320-----233-1056
BSUI470137:0:Tno---0-------
BSUI470137:1:Tno-2450-----246-872
BTHA271848:1:Tno-819------0--
BTHU281309:1:Tno2337--0----269023392338
BTHU412694:1:Tno2156--0----249521582157
BVIE269482:3:Tyes0--------21
BVIE269482:6:Tyes---0-------
BVIE269482:7:Tyes-0------1676--
BWEI315730:4:Tyes2206--0----271122082207
BXEN266265:1:Tyes13209023456713191318
CACE272562:1:Tyes--------0--
CAULO:0:Tyes2-------8410
CBEI290402:0:Tyes----------0
CBOT36826:1:Tno--------0--
CBOT441770:0:Tyes--------0--
CBOT441771:0:Tno--------0--
CBOT441772:1:Tno--------0--
CBOT498213:1:Tno--------0--
CBOT508765:1:Tyes-0-------2081-
CBOT515621:2:Tyes--------0--
CBOT536232:0:Tno--------0--
CCON360104:2:Tyes-0---------
CCUR360105:0:Tyes-0---------
CDIF272563:1:Tyes--81838485--0--
CDIP257309:0:Tyes--------0--
CEFF196164:0:Fyes--------903-0
CFET360106:0:Tyes-0---------
CGLU196627:0:Tyes1317--2268----0-1319
CHOM360107:1:Tyes-0---------
CHYD246194:0:Tyes---0-------
CJAP155077:0:Tyes---0-------
CJEI306537:0:Tyes--------1221-0
CMIC31964:2:Tyes---0----155--
CMIC443906:2:Tyes-5691011121342501
CNOV386415:0:Tyes---0-----1251-
CPHY357809:0:Tyes2---------0
CPSY167879:0:Tyes-1625-------0-
CSAL290398:0:Tyes983137-2900----09697
CSP501479:4:Fyes0----------
CSP501479:8:Fyes-204567894041
CSP78:2:Tyes2-------3210
CTET212717:0:Tyes---------0-
CVES412965:0:Tyes-0---------
CVIO243365:0:Tyes-90234567-1152
DARO159087:0:Tyes02024------10402-
DDES207559:0:Tyes407121087654310
DETH243164:0:Tyes-0---------
DGEO319795:0:Tyes--------0--
DHAF138119:0:Tyes-871-0-----2772-
DNOD246195:0:Tyes-0---------
DOLE96561:0:Tyes-0---------
DRAD243230:2:Tyes--------0--
DRAD243230:3:Tyes-0---------
DRED349161:0:Tyes-1313-0------988
DSHI398580:5:Tyes1145-20550-----11431144
DVUL882:1:Tyes0--------21
ECAR218491:0:Tyes-1431421401391381371360-1814
ECOL199310:0:Tno6240616618619620621622623625626
ECOL316407:0:Tno9013456781011
ECOL331111:6:Tno9013456781011
ECOL362663:0:Tno9013456781011
ECOL364106:1:Tno9013456781011
ECOL405955:2:Tyes9013-56781011
ECOL409438:6:Tyes9013456781011
ECOL413997:0:Tno9013456781011
ECOL439855:4:Tno9013456781011
ECOL469008:0:Tno2111087654310
ECOL481805:0:Tno2111087654310
ECOL585034:0:Tno9013456781011
ECOL585035:0:Tno9013456781011
ECOL585055:0:Tno9013456781011
ECOL585056:2:Tno9013456781011
ECOL585057:0:Tno9013456781011
ECOL585397:0:Tno9013456781011
ECOL83334:0:Tno9013456781011
ECOLI:0:Tno9013456781011
ECOO157:0:Tno9013456781011
EFAE226185:3:Tyes--------2618-0
EFER585054:1:Tyes-1105------1147-0
ESP42895:1:Tyes9013456781011
FALN326424:0:Tyes---0-------
FMAG334413:1:Tyes---0-------
FNOD381764:0:Tyes-105-0-------
FNUC190304:0:Tyes---0-----736737
FSP106370:0:Tyes--2------01
FSP1855:0:Tyes---0-------
FSUC59374:0:Tyes----------0
GBET391165:0:Tyes--0868-------
GKAU235909:1:Tyes---0----1482--
GSUL243231:0:Tyes---1817------0
GTHE420246:1:Tyes---0----1693--
GURA351605:0:Tyes---------0-
GVIO251221:0:Tyes-1146-3677------0
HARS204773:0:Tyes22691228-1414----90702267
HAUR316274:2:Tyes---0-------
HBUT415426:0:Tyes----------0
HCHE349521:0:Tyes-5427-0----6059--
HDUC233412:0:Tyes---0-------
HINF281310:0:Tyes-0---------
HINF374930:0:Tyes-0---------
HINF71421:0:Tno-0---------
HMAR272569:6:Tyes1---------0
HMAR272569:7:Tyes--0------38-
HMAR272569:8:Tyes---0-------
HMOD498761:0:Tyes-521-------0-
HMUK485914:1:Tyes---0-------
HNEP81032:0:Tyes---0-----22542255
HSAL478009:4:Tyes---241------0
HSP64091:2:Tno---232------0
HWAL362976:1:Tyes--8654----0
JSP290400:1:Tyes-20446----3-1123
JSP375286:0:Tyes29350-1078----138729342933
KPNE272620:2:Tyes73701345678739740
KRAD266940:2:Fyes---0----141127082709
LACI272621:0:Tyes---181----3720136
LBRE387344:2:Tyes---1145----0--
LCAS321967:1:Tyes371--0-----368369
LCHO395495:0:Tyes455--0-----457-
LDEL321956:0:Tyes---54----19601
LDEL390333:0:Tyes---51----19401
LGAS324831:0:Tyes--------134715790
LHEL405566:0:Tyes---168----4640119
LINN272626:1:Tno---1105----0--
LJOH257314:0:Tyes--------142217410
LLAC272622:5:Tyes2-------1115-0
LLAC272623:0:Tyes2-------1137-0
LMES203120:1:Tyes---0------7
LMON169963:0:Tno---973----0--
LMON265669:0:Tyes---948----0--
LPLA220668:0:Tyes---599----0-140
LPNE272624:0:Tno---0-------
LPNE297245:1:Fno-1252-0-------
LPNE297246:1:Fyes-1240-0-------
LPNE400673:0:Tno---0-------
LSAK314315:0:Tyes---0----889--
LSPH444177:1:Tyes---0----2517-1468
LWEL386043:0:Tyes---938----0--
LXYL281090:0:Tyes---0----1334--
MABS561007:1:Tyes--------0-3299
MAER449447:0:Tyes---1720------0
MAQU351348:0:Tyes-5049474645--39041
MAQU351348:1:Tyes0----------
MAQU351348:2:Tyes------0----
MBAR269797:1:Tyes---0-------
MCAP340047:0:Tyes1---------0
MFLA265072:0:Tyes-0---------
MFLO265311:0:Tyes0---------1
MGIL350054:3:Tyes--------0-567
MJAN243232:2:Tyes----------0
MLOT266835:1:Tyes-0---122-120---
MLOT266835:2:Tyes12-127865-2-01110
MMAG342108:0:Tyes---3281-----0-
MMAR394221:0:Tyes1--2206-----10
MMAZ192952:0:Tyes---0-------
MMYC272632:0:Tyes0---------1
MPET420662:0:Tyes31110876540-2
MPET420662:1:Tyes---------0-
MSED399549:0:Tyes---0-------
MSME246196:0:Tyes0--3716----398521
MSP164757:0:Tno2--------01
MSP266779:3:Tyes-13140-------
MSP400668:0:Tyes8804336-0----1535-881
MSP409:2:Tyes10013456781213
MSUC221988:0:Tyes-0---------
MVAN350058:0:Tyes2969-2961296329642965--109301
MXAN246197:0:Tyes--------0--
NARO279238:0:Tyes2--------0-
NFAR247156:2:Tyes0--------21
NGON242231:0:Tyes-0---------
NHAM323097:2:Tyes---0-------
NMEN122586:0:Tno-0---------
NMEN122587:0:Tyes-0---------
NMEN272831:0:Tno-0---------
NMEN374833:0:Tno-0---------
NPHA348780:1:Tyes----------0
NPHA348780:2:Tyes0----------
NSP103690:6:Tyes21430213221342135213821402141214221452146
NSP35761:1:Tyes--------0--
NWIN323098:0:Tyes---0-------
OANT439375:5:Tyes04185891011121323
OCAR504832:0:Tyes1--59-----20
OIHE221109:0:Tyes411-405404403402401--0409
PABY272844:0:Tyes---0-------
PACN267747:0:Tyes--------0--
PAER208963:0:Tyes2111087654310
PAER208964:0:Tno9013456781011
PARC259536:0:Tyes-0---------
PAST100379:0:Tyes---0-------
PATL342610:0:Tyes---------0-
PCRY335284:1:Tyes-0---------
PDIS435591:0:Tyes-0---------
PENT384676:0:Tyes-2697-------01573
PFLU205922:0:Tyes01853-------3-
PFLU216595:1:Tyes2111087654310
PFLU220664:0:Tyes---0----889--
PHAL326442:1:Tyes-0---------
PING357804:0:Tyes8013456-11109
PLUM243265:0:Fyes-0--------4278
PMAR146891:0:Tyes-0-------204-
PMAR167539:0:Tyes---------0-
PMAR167540:0:Tyes-0-------210-
PMAR167542:0:Tyes-0-------216-
PMAR167546:0:Tyes-0-------235762
PMAR167555:0:Tyes---------0-
PMAR59920:0:Tno---------0-
PMAR74546:0:Tyes-0-------210-
PMAR74547:0:Tyes---------0115
PMAR93060:0:Tyes-0-------214-
PMEN399739:0:Tyes9013456781011
PMOB403833:0:Tyes---0-------
PMUL272843:1:Tyes-0---------
PNAP365044:8:Tyes-0------2237-1261
PPEN278197:0:Tyes---0----1062--
PPRO298386:1:Tyes932--------0-
PPRO298386:2:Tyes-0-2735------459
PPUT160488:0:Tno23635-3619-----0-
PPUT351746:0:Tyes1607-------0-
PPUT76869:0:Tno2726-------01
PSP117:0:Tyes-0---------
PSP296591:2:Tyes-300-1073-----11940
PSP312153:0:Tyes-0---------
PSP56811:2:Tyes-559-0------1829
PSTU379731:0:Tyes21143-------0-
PSYR205918:0:Tyes2111087654310
PSYR223283:2:Tyes2111087654310
PTHE370438:0:Tyes---1490------0
RBEL336407:0:Tyes-0---------
RBEL391896:0:Fno-0---------
RCAS383372:0:Tyes---0------396
RDEN375451:4:Tyes01257125612591260126112621263126412711272
RETL347834:5:Tyes4019101112131456
REUT264198:2:Tyes2515131211109810
REUT381666:1:Tyes12902345671314
RFER338969:1:Tyes44902345674546
RLEG216596:6:Tyes-0110111213141557
RMET266264:2:Tyes131002345671415
RPAL258594:0:Tyes698013456781112
RPAL316055:0:Tyes01047104810501051105210531054105510581059
RPAL316056:0:Tyes31580134567831602592
RPAL316057:0:Tyes3121198765410
RPAL316058:0:Tyes02184218321812180217921782177217621732172
RPOM246200:1:Tyes-79543210304303
RPRO272947:0:Tyes-0---------
RRUB269796:1:Tyes--0973-------
RSAL288705:0:Tyes0---------1130
RSOL267608:1:Tyes---0----846-2282
RSP101510:3:Fyes-4915------4365-0
RSP357808:0:Tyes--02345---9
RSPH349102:2:Tyes---------0-
RSPH349102:4:Tyes0---------1
RTYP257363:0:Tno-0---------
RXYL266117:0:Tyes-976-370----125-0
SACI56780:0:Tyes-0---------
SAGA205921:0:Tno---0-------
SAGA208435:0:Tno---0-------
SAGA211110:0:Tyes---0-------
SARE391037:0:Tyes---1512----0--
SAUR158878:1:Tno0--------21
SAUR158879:1:Tno0--------21
SAUR196620:0:Tno0--------21
SAUR273036:0:Tno0--------21
SAUR282458:0:Tno0--------21
SAUR282459:0:Tno0--------21
SAUR359786:1:Tno0--------21
SAUR359787:1:Tno0--------21
SAUR367830:3:Tno0--------21
SAUR418127:0:Tyes0--------21
SAUR426430:0:Tno0---------1
SAUR93061:0:Fno0--------21
SAUR93062:1:Tno0--------21
SAVE227882:1:Fyes---1174----0-3300
SBAL399599:3:Tyes-0---------
SBAL402882:1:Tno-0---------
SBOY300268:1:Tyes9013456781011
SCO:2:Fyes---0----1854-668
SDEG203122:0:Tyes-1671-0-------
SDEN318161:0:Tyes-1564-------0-
SDYS300267:1:Tyes21097654-310
SELO269084:0:Tyes-112-0------1037
SENT209261:0:Tno-2925------0-1281
SENT220341:0:Tno-2895------1352-0
SENT295319:0:Tno-2769------0-1159
SENT321314:2:Tno-2880------1354-0
SENT454169:2:Tno-3005------1375-0
SEPI176279:1:Tyes0--------21
SEPI176280:0:Tno0--------21
SERY405948:0:Tyes2001--0----61220032002
SFLE198214:0:Tyes-0------87436435
SFLE373384:0:Tno18761647------018751874
SFUM335543:0:Tyes-0---------
SGLO343509:3:Tyes---0----927--
SGOR29390:0:Tyes--------0--
SHAE279808:0:Tyes1--------2290
SHAL458817:0:Tyes-0-------2214-
SHIGELLA:0:Tno11731606------011741175
SLAC55218:0:Fyes---0-------
SLAC55218:1:Fyes221-0------218219
SLOI323850:0:Tyes-1187-------0-
SMAR399550:0:Tyes---0-------
SMED366394:2:Tyes427423424012345428429
SMEL266834:1:Tyes50162061961861761661567
SMUT210007:0:Tyes---16------0
SONE211586:1:Tyes-0---------
SPEA398579:0:Tno-2205-------0-
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