CANDIDATE ID: 98

CANDIDATE ID: 98

NUMBER OF GENES: 11
AVERAGE SCORE:    9.9930675e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    8.1818182e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- G6350 (nadD) (b0639)
   Products of gene:
     - NICONUCADENYLYLTRAN-MONOMER (nicotinate-mononucleotide adenylyltransferase)
       Reactions:
        ATP + nicotinate mononucleotide  ->  diphosphate + nicotinate adenine dinucleotide
         In pathways
         PWY-3502 (PWY-3502)
         PWY0-781 (aspartate superpathway)
         NADSYN-PWY (NADSYN-PWY)
         PYRIDNUCSAL-PWY (NAD salvage pathway I)
         PYRIDNUCSYN-PWY (NAD biosynthesis I (from aspartate))
         PWY-5381 (PWY-5381)
         PWY-5653 (PWY-5653)

- EG11893 (dacD) (b2010)
   Products of gene:
     - RPOA-MONOMER (DD-carboxypeptidase, penicillin-binding protein 6b)
       Reactions:
        a lipid II + H2O  =  a N-acetylglucosamine--N-acetylmuramyl-(tetrapeptide) pyrophosphoryl-undecaprenol + D-alanine

- EG11592 (ybeD) (b0631)
   Products of gene:
     - EG11592-MONOMER (conserved protein)

- EG11591 (lipB) (b0630)
   Products of gene:
     - EG11591-MONOMER (lipoyl-protein ligase)
       Reactions:
        an apo-GcvH protein + a lipoyl-[acp]  =  H-Gcv-protein-(lipoyl)lysine + a holo-[acp]
        SucB + lipoyl-ACP  =  SucB-lipoate + a holo-[acp]
        lipoate acetyltransferase / dihydrolipoamide acetyltransferase + lipoyl-ACP  =  AceF-lipoate + a holo-[acp]
        an octanoyl-[acp] + a non-lipoylated protein-lipoyl domain  ->  an octanoylated protein lipoyl-domain + a holo-[acp]
         In pathways
         PWY0-501 (lipoate biosynthesis and incorporation I)

- EG11412 (holA) (b0640)
   Products of gene:
     - EG11412-MONOMER (DNA polymerase III, δ subunit)
     - CPLX0-3801 (DNA polymerase III, preinitiation complex)
     - CPLX0-3803 (DNA polymerase III, holoenzyme)

- EG11255 (ybeB) (b0637)
   Products of gene:
     - EG11255-MONOMER (predicted protein)

- EG11254 (rlmH) (b0636)
   Products of gene:
     - EG11254-MONOMER (23S rRNA m3Ψ1915 methyltransferase)
     - CPLX0-7423 (23S rRNA m3Ψ1915 methyltransferase)
       Reactions:
        S-adenosyl-L-methionine + pseudouridine1915 in 23S rRNA  =  S-adenosyl-L-homocysteine + N3-methylpseudouridine1915 in 23S rRNA

- EG10854 (rlpA) (b0633)
   Products of gene:
     - EG10854-MONOMER (rare lipoprotein RlpA)

- EG10607 (mrdB) (b0634)
   Products of gene:
     - EG10607-MONOMER (rod shape-determining membrane protein; sensitivity to radiation and drugs)

- EG10606 (mrdA) (b0635)
   Products of gene:
     - EG10606-MONOMER (cell shape; peptidoglycan synthetase; penicillin-binding protein 2)
       Reactions:
        peptidoglycan D-alanyl-DAP crosslink + H2O  =  peptidoglycan tetrapeptide, glycan chain 2 + peptidoglycan tetrapeptide, glycan chain 1

- EG10201 (dacA) (b0632)
   Products of gene:
     - EG10201-MONOMER (D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5)
       Reactions:
        a beta-lactam + H2O  ->  a substituted beta-amino acid
        a lipid II + H2O  =  a N-acetylglucosamine--N-acetylmuramyl-(tetrapeptide) pyrophosphoryl-undecaprenol + D-alanine



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 174
Effective number of orgs (counting one per cluster within 468 clusters): 110

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175811
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295311
YPES386656 ncbi Yersinia pestis Pestoides F11
YPES377628 ncbi Yersinia pestis Nepal51611
YPES360102 ncbi Yersinia pestis Antiqua11
YPES349746 ncbi Yersinia pestis Angola11
YPES214092 ncbi Yersinia pestis CO9211
YPES187410 ncbi Yersinia pestis KIM 1011
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808111
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A10
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 31101810
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC1033110
XFAS405440 ncbi Xylella fastidiosa M1210
XFAS183190 ncbi Xylella fastidiosa Temecula110
XFAS160492 ncbi Xylella fastidiosa 9a5c10
XCAM487884 Xanthomonas campestris pv. paulliniae10
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-1010
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 800410
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 3391310
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 30610
VVUL216895 ncbi Vibrio vulnificus CMCP610
VVUL196600 ncbi Vibrio vulnificus YJ01610
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 221063310
VFIS312309 ncbi Vibrio fischeri ES11410
VEIS391735 ncbi Verminephrobacter eiseniae EF01-29
VCHO345073 ncbi Vibrio cholerae O39510
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696110
TTUR377629 ncbi Teredinibacter turnerae T790110
TDEN292415 ncbi Thiobacillus denitrificans ATCC 2525911
TCRU317025 ncbi Thiomicrospira crunogena XCL-210
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT211
SSP94122 ncbi Shewanella sp. ANA-311
SSON300269 ncbi Shigella sonnei Ss04611
SSED425104 ncbi Shewanella sediminis HAW-EB311
SPRO399741 ncbi Serratia proteamaculans 56811
SPEA398579 ncbi Shewanella pealeana ATCC 70034511
SONE211586 ncbi Shewanella oneidensis MR-111
SLOI323850 ncbi Shewanella loihica PV-411
SHIGELLA ncbi Shigella flexneri 2a str. 2457T11
SHAL458817 ncbi Shewanella halifaxensis HAW-EB411
SGLO343509 ncbi Sodalis glossinidius morsitans10
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB9
SFLE373384 ncbi Shigella flexneri 5 str. 840111
SFLE198214 ncbi Shigella flexneri 2a str. 30111
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47611
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6711
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915011
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1811
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty211
SDYS300267 ncbi Shigella dysenteriae Sd19711
SDEN318161 ncbi Shewanella denitrificans OS21711
SDEG203122 ncbi Saccharophagus degradans 2-4011
SBOY300268 ncbi Shigella boydii Sb22711
SBAL402882 ncbi Shewanella baltica OS18511
SBAL399599 ncbi Shewanella baltica OS19511
RSOL267608 ncbi Ralstonia solanacearum GMI100011
RMET266264 ncbi Ralstonia metallidurans CH3411
RFER338969 ncbi Rhodoferax ferrireducens T11810
REUT381666 ncbi Ralstonia eutropha H1611
REUT264198 ncbi Ralstonia eutropha JMP13411
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC300010
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a10
PSTU379731 ncbi Pseudomonas stutzeri A150111
PSP56811 Psychrobacter sp.9
PSP296591 ncbi Polaromonas sp. JS66611
PPUT76869 ncbi Pseudomonas putida GB-110
PPUT351746 ncbi Pseudomonas putida F110
PPUT160488 ncbi Pseudomonas putida KT244010
PPRO298386 ncbi Photobacterium profundum SS910
PNAP365044 ncbi Polaromonas naphthalenivorans CJ210
PMUL272843 ncbi Pasteurella multocida multocida Pm7010
PMEN399739 ncbi Pseudomonas mendocina ymp11
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO111
PING357804 ncbi Psychromonas ingrahamii 3711
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC12511
PFLU220664 ncbi Pseudomonas fluorescens Pf-510
PFLU216595 ncbi Pseudomonas fluorescens SBW2510
PFLU205922 ncbi Pseudomonas fluorescens Pf0-110
PENT384676 ncbi Pseudomonas entomophila L4810
PATL342610 ncbi Pseudoalteromonas atlantica T6c11
PARC259536 ncbi Psychrobacter arcticus 273-410
PAER208964 ncbi Pseudomonas aeruginosa PAO111
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA1411
NMUL323848 ncbi Nitrosospira multiformis ATCC 2519611
NMEN374833 ncbi Neisseria meningitidis 0534429
NMEN272831 ncbi Neisseria meningitidis FAM189
NMEN122587 ncbi Neisseria meningitidis Z24919
NMEN122586 ncbi Neisseria meningitidis MC589
NGON242231 ncbi Neisseria gonorrhoeae FA 10909
NEUT335283 ncbi Nitrosomonas eutropha C9111
NEUR228410 ncbi Nitrosomonas europaea ATCC 1971811
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E10
MSP400668 ncbi Marinomonas sp. MWYL110
MPET420662 ncbi Methylibium petroleiphilum PM110
MFLA265072 ncbi Methylobacillus flagellatus KT11
MCAP243233 ncbi Methylococcus capsulatus Bath11
MAQU351348 ncbi Marinobacter aquaeolei VT811
LPNE400673 ncbi Legionella pneumophila Corby9
LPNE297246 ncbi Legionella pneumophila Paris9
LPNE297245 ncbi Legionella pneumophila Lens10
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 110
LCHO395495 ncbi Leptothrix cholodnii SP-611
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857811
JSP375286 ncbi Janthinobacterium sp. Marseille11
ILOI283942 ncbi Idiomarina loihiensis L2TR11
HSOM205914 ncbi Haemophilus somnus 129PT10
HINF71421 ncbi Haemophilus influenzae Rd KW2010
HINF374930 ncbi Haemophilus influenzae PittEE10
HINF281310 ncbi Haemophilus influenzae 86-028NP10
HHAL349124 ncbi Halorhodospira halophila SL111
HDUC233412 ncbi Haemophilus ducreyi 35000HP10
HCHE349521 ncbi Hahella chejuensis KCTC 239610
HARS204773 ncbi Herminiimonas arsenicoxydans11
ESP42895 Enterobacter sp.11
EFER585054 ncbi Escherichia fergusonii ATCC 3546911
ECOO157 ncbi Escherichia coli O157:H7 EDL93311
ECOL83334 Escherichia coli O157:H711
ECOL585397 ncbi Escherichia coli ED1a11
ECOL585057 ncbi Escherichia coli IAI3911
ECOL585056 ncbi Escherichia coli UMN02611
ECOL585055 ncbi Escherichia coli 5598911
ECOL585035 ncbi Escherichia coli S8811
ECOL585034 ncbi Escherichia coli IAI111
ECOL481805 ncbi Escherichia coli ATCC 873911
ECOL469008 ncbi Escherichia coli BL21(DE3)11
ECOL439855 ncbi Escherichia coli SMS-3-511
ECOL413997 ncbi Escherichia coli B str. REL60611
ECOL409438 ncbi Escherichia coli SE1111
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8911
ECOL362663 ncbi Escherichia coli 53611
ECOL331111 ncbi Escherichia coli E24377A11
ECOL316407 ncbi Escherichia coli K-12 substr. W311011
ECOL199310 ncbi Escherichia coli CFT07311
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104311
DNOD246195 ncbi Dichelobacter nodosus VCS1703A9
DARO159087 ncbi Dechloromonas aromatica RCB11
CVIO243365 ncbi Chromobacterium violaceum ATCC 1247211
CSAL290398 ncbi Chromohalobacter salexigens DSM 304311
CPSY167879 ncbi Colwellia psychrerythraea 34H11
CJAP155077 Cellvibrio japonicus11
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-11111
CBUR360115 ncbi Coxiella burnetii RSA 33110
CBUR227377 ncbi Coxiella burnetii RSA 49310
BVIE269482 ncbi Burkholderia vietnamiensis G411
BTHA271848 ncbi Burkholderia thailandensis E26411
BSP36773 Burkholderia sp.11
BPSE320373 ncbi Burkholderia pseudomallei 66810
BPSE320372 ncbi Burkholderia pseudomallei 1710b11
BPSE272560 ncbi Burkholderia pseudomallei K9624311
BPET94624 Bordetella petrii11
BPER257313 ncbi Bordetella pertussis Tohama I11
BPAR257311 ncbi Bordetella parapertussis 1282211
BMAL320389 ncbi Burkholderia mallei NCTC 1024711
BMAL320388 ncbi Burkholderia mallei SAVP111
BMAL243160 ncbi Burkholderia mallei ATCC 2334411
BCEN331272 ncbi Burkholderia cenocepacia HI242411
BCEN331271 ncbi Burkholderia cenocepacia AU 105411
BBRO257310 ncbi Bordetella bronchiseptica RB5011
BAMB398577 ncbi Burkholderia ambifaria MC40-611
BAMB339670 ncbi Burkholderia ambifaria AMMD11
ASP76114 ncbi Aromatoleum aromaticum EbN111
ASP62977 ncbi Acinetobacter sp. ADP110
ASP62928 ncbi Azoarcus sp. BH7211
ASP232721 ncbi Acidovorax sp. JS4210
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44911
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL0310
APLE416269 ncbi Actinobacillus pleuropneumoniae L2010
AHYD196024 Aeromonas hydrophila dhakensis11
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 2327010
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-110
ABOR393595 ncbi Alcanivorax borkumensis SK210
ABAU360910 ncbi Bordetella avium 197N11
AAVE397945 ncbi Acidovorax citrulli AAC00-110


Names of the homologs of the genes in the group in each of these orgs
  G6350   EG11893   EG11592   EG11591   EG11412   EG11255   EG11254   EG10854   EG10607   EG10606   EG10201   
YPSE349747 YPSIP31758_2929YPSIP31758_2952YPSIP31758_2953YPSIP31758_2954YPSIP31758_2928YPSIP31758_2947YPSIP31758_2948YPSIP31758_2951YPSIP31758_2950YPSIP31758_2949YPSIP31758_2952
YPSE273123 YPTB1100YPTB1094YPTB1093YPTB1092YPTB1101YPTB1099YPTB1098YPTB1095YPTB1096YPTB1097YPTB1351
YPES386656 YPDSF_2646YPDSF_2652YPDSF_2653YPDSF_2654YPDSF_2645YPDSF_2647YPDSF_2648YPDSF_2651YPDSF_2650YPDSF_2649YPDSF_2652
YPES377628 YPN_1092YPN_1086YPN_1085YPN_1084YPN_1093YPN_1091YPN_1090YPN_1087YPN_1088YPN_1089YPN_2659
YPES360102 YPA_2490YPA_2498YPA_2499YPA_2500YPA_2489YPA_2491YPA_2492YPA_2495YPA_2494YPA_2493YPA_2498
YPES349746 YPANGOLA_A1845YPANGOLA_A1852YPANGOLA_A1853YPANGOLA_A1854YPANGOLA_A1844YPANGOLA_A1846YPANGOLA_A1847YPANGOLA_A1851YPANGOLA_A1850YPANGOLA_A1849YPANGOLA_A1852
YPES214092 YPO2607YPO2601YPO2600YPO2599YPO2608YPO2606YPO2605YPO2602YPO2603YPO2604YPO2601
YPES187410 Y1181Y1175Y1174Y1173Y1182Y1180Y1179Y1176Y1177Y1178Y1175
YENT393305 YE2999YE3005YE3006YE3007YE2998YE3000YE3001YE3004YE3003YE3002YE3005
XORY360094 XOOORF_3683XOOORF_0937XOOORF_0940XOOORF_3684XOOORF_3682XOOORF_3679XOOORF_0935XOOORF_0925XOOORF_0924XOOORF_0937
XORY342109 XOO3139XOO3734XOO3731XOO3140XOO3138XOO3135XOO3735XOO3744XOO3745XOO3734
XORY291331 XOO3326XOO3956XOO3953XOO3327XOO3325XOO3322XOO3957XOO3967XOO3968XOO3956
XFAS405440 XFASM12_1379XFASM12_1430XFASM12_0600XFASM12_1378XFASM12_1380XFASM12_1884XFASM12_1386XFASM12_0672XFASM12_0671XFASM12_1430
XFAS183190 PD_1233PD_1277PD_0531PD_1232PD_1234PD_1712PD_1236PD_0561PD_0560PD_1277
XFAS160492 XF2179XF2230XF1270XF2178XF2180XF0338XF2185XF1313XF1312XF2230
XCAM487884 XCC-B100_1544XCC-B100_0741XCC-B100_0744XCC-B100_1543XCC-B100_1545XCC-B100_1547XCC-B100_0740XCC-B100_0728XCC-B100_0727XCC-B100_0741
XCAM316273 XCAORF_2962XCAORF_3796XCAORF_3792XCAORF_2963XCAORF_2961XCAORF_2959XCAORF_3797XCAORF_3802XCAORF_3803XCAORF_3796
XCAM314565 XC_1500XC_0708XC_0712XC_1499XC_1501XC_1503XC_0707XC_0695XC_0694XC_0708
XCAM190485 XCC2616XCC3456XCC3452XCC2617XCC2615XCC2613XCC3457XCC3466XCC3467XCC3456
XAXO190486 XAC2778XAC0664XAC0667XAC2779XAC2777XAC2775XAC0663XAC0660XAC0659XAC0664
VVUL216895 VV1_0281VV1_0282VV1_0283VV1_0275VV1_0276VV1_0277VV1_0280VV1_0279VV2_1370VV1_0281
VVUL196600 VV0903VV0902VV0901VV0909VV0908VV0907VV0904VV0905VV0906VV0903
VPAR223926 VP0719VP0718VP0717VP0725VP0724VP0723VP0720VP0721VP0722VP0719
VFIS312309 VF0745VF0744VF0743VF0751VF0750VF0749VF0746VF0747VF1481VF0745
VEIS391735 VEIS_1254VEIS_0472VEIS_0471VEIS_0964VEIS_2625VEIS_2624VEIS_2191VEIS_1607VEIS_1254
VCHO345073 VC0395_A0470VC0395_A0469VC0395_A0468VC0395_A0476VC0395_A0475VC0395_A0474VC0395_A0471VC0395_A0472VC0395_A0473VC0395_A0470
VCHO VC0947VC0945VC0944VC0953VC0952VC0951VC0948VC0949VC0950VC0947
TTUR377629 TERTU_0608TERTU_0609TERTU_0610TERTU_3887TERTU_0601TERTU_0602TERTU_0606TERTU_0604TERTU_0603TERTU_0608
TDEN292415 TBD_2441TBD_0647TBD_0268TBD_0269TBD_2443TBD_2440TBD_2439TBD_0265TBD_0264TBD_0263TBD_0647
TCRU317025 TCR_0484TCR_1635TCR_1637TCR_1638TCR_0481TCR_0485TCR_0486TCR_1634TCR_1633TCR_1635
STYP99287 STM0645STM2062STM0636STM0635STM0646STM0642STM0641STM0638STM0639STM1910STM0637
SSP94122 SHEWANA3_0998SHEWANA3_0991SHEWANA3_0990SHEWANA3_0989SHEWANA3_0999SHEWANA3_0997SHEWANA3_0996SHEWANA3_0992SHEWANA3_0994SHEWANA3_0995SHEWANA3_0991
SSON300269 SSO_0593SSO_2080SSO_0585SSO_0584SSO_0594SSO_0591SSO_0590SSO_0587SSO_0588SSO_0589SSO_0586
SSED425104 SSED_3482SSED_3489SSED_3490SSED_3491SSED_3481SSED_3483SSED_3484SSED_3488SSED_3486SSED_3485SSED_3489
SPRO399741 SPRO_1204SPRO_2636SPRO_1197SPRO_1196SPRO_1205SPRO_1203SPRO_1202SPRO_1199SPRO_1200SPRO_2356SPRO_1628
SPEA398579 SPEA_3146SPEA_3153SPEA_3154SPEA_3155SPEA_3145SPEA_3147SPEA_3148SPEA_3152SPEA_3150SPEA_3149SPEA_3153
SONE211586 SO_1171SO_1164SO_1163SO_1162SO_1172SO_1170SO_1169SO_1165SO_1167SO_1168SO_1164
SLOI323850 SHEW_2932SHEW_2939SHEW_2940SHEW_2941SHEW_2931SHEW_2933SHEW_2934SHEW_2938SHEW_2936SHEW_2935SHEW_2939
SHIGELLA YBENDACAYBEDLIPBHOLAYBEBYBEARLPAMRDBMRDADACA
SHAL458817 SHAL_3231SHAL_3238SHAL_3239SHAL_3240SHAL_3230SHAL_3232SHAL_3233SHAL_3237SHAL_3235SHAL_3234SHAL_3238
SGLO343509 SG0800SG0795SG0794SG0793SG0801SG0799SG0798SG0796SG0797SG0795
SFUM335543 SFUM_3645SFUM_1305SFUM_1675SFUM_3646SFUM_1420SFUM_3300SFUM_2588SFUM_2589SFUM_1305
SFLE373384 SFV_0687SFV_0694SFV_0695SFV_0696SFV_0686SFV_0689SFV_0690SFV_0693SFV_0692SFV_0691SFV_0694
SFLE198214 AAN42278.1AAN42285.1AAN42286.1AAN42287.1AAN42277.1AAN42280.1AAN42281.1AAN42284.1AAN42283.1AAN42282.1AAN42285.1
SENT454169 SEHA_C0761SEHA_C2285SEHA_C0752SEHA_C0751SEHA_C0762SEHA_C0758SEHA_C0757SEHA_C0754SEHA_C0755SEHA_C2125SEHA_C0753
SENT321314 SCH_0675SCH_2071SCH_0665SCH_0664SCH_0676SCH_0672SCH_0671SCH_0668SCH_0669SCH_1917SCH_0666
SENT295319 SPA2089SPA2097SPA2098SPA2099SPA2088SPA2092SPA2093SPA2096SPA2095SPA2094SPA2097
SENT220341 STY0696STY0688STY0687STY0686STY0697STY0693STY0692STY0689STY0690STY0691STY0688
SENT209261 T2222T2230T2231T2232T2221T2225T2226T2229T2228T2227T2230
SDYS300267 SDY_0561SDY_2233SDY_0553SDY_0552SDY_0562SDY_0559SDY_0558SDY_0555SDY_0556SDY_0557SDY_0554
SDEN318161 SDEN_0794SDEN_0851SDEN_0869SDEN_0868SDEN_0795SDEN_0857SDEN_0856SDEN_0852SDEN_0854SDEN_0855SDEN_0851
SDEG203122 SDE_3344SDE_3337SDE_3336SDE_3335SDE_3310SDE_3343SDE_3342SDE_3338SDE_3340SDE_3341SDE_3337
SBOY300268 SBO_0503SBO_0496SBO_0495SBO_0494SBO_0504SBO_0501SBO_0500SBO_0497SBO_0498SBO_0499SBO_0496
SBAL402882 SHEW185_3314SHEW185_3321SHEW185_3322SHEW185_3323SHEW185_3313SHEW185_3315SHEW185_3316SHEW185_3320SHEW185_3318SHEW185_3317SHEW185_3321
SBAL399599 SBAL195_3450SBAL195_3457SBAL195_3458SBAL195_3459SBAL195_3449SBAL195_3451SBAL195_3452SBAL195_3456SBAL195_3454SBAL195_3453SBAL195_3457
RSOL267608 RSC2193RSC0327RSC0326RSC0323RSC2742RSC2194RSC2195RSC3267RSC0063RSC0062RSC0327
RMET266264 RMET_0782RMET_0225RMET_0224RMET_0060RMET_2971RMET_0781RMET_0780RMET_3432RMET_0055RMET_0054RMET_0225
RFER338969 RFER_2078RFER_0920RFER_3936RFER_3935RFER_0760RFER_2079RFER_2080RFER_3371RFER_3920RFER_0920
REUT381666 H16_A0913H16_A0302H16_A0303H16_A0122H16_A3137H16_A0912H16_A0911H16_A3581H16_A0117H16_A0116H16_A0302
REUT264198 REUT_A2525REUT_A0280REUT_A0281REUT_A0085REUT_A2832REUT_A2526REUT_A2527REUT_A3267REUT_A0080REUT_A0079REUT_A0280
PSYR223283 PSPTO_4828PSPTO_4821PSPTO_4819PSPTO_4814PSPTO_4827PSPTO_4826PSPTO_4822PSPTO_4824PSPTO_4825PSPTO_4821
PSYR205918 PSYR_4368PSYR_4361PSYR_4359PSYR_4354PSYR_4367PSYR_4366PSYR_4362PSYR_4364PSYR_4365PSYR_4361
PSTU379731 PST_3784PST_3777PST_3776PST_3775PST_3770PST_3783PST_3782PST_3778PST_3780PST_3781PST_3777
PSP56811 PSYCPRWF_0344PSYCPRWF_1758PSYCPRWF_1380PSYCPRWF_0343PSYCPRWF_1764PSYCPRWF_0831PSYCPRWF_1786PSYCPRWF_0800PSYCPRWF_1758
PSP296591 BPRO_1971BPRO_0250BPRO_0316BPRO_0314BPRO_4600BPRO_1972BPRO_1973BPRO_4129BPRO_1091BPRO_0225BPRO_0250
PPUT76869 PPUTGB1_4863PPUTGB1_4856PPUTGB1_4854PPUTGB1_4849PPUTGB1_4862PPUTGB1_4861PPUTGB1_4857PPUTGB1_4859PPUTGB1_4860PPUTGB1_4856
PPUT351746 PPUT_4685PPUT_4678PPUT_4676PPUT_4671PPUT_4684PPUT_4683PPUT_4679PPUT_4681PPUT_4682PPUT_4678
PPUT160488 PP_4810PP_4803PP_4801PP_4796PP_4809PP_4808PP_4804PP_4806PP_4807PP_4803
PPRO298386 PBPRA2893PBPRA2894PBPRA2895PBPRA2887PBPRA2888PBPRA2889PBPRA2892PBPRA2891PBPRB0070PBPRA2893
PNAP365044 PNAP_0197PNAP_0245PNAP_0243PNAP_3769PNAP_1732PNAP_1733PNAP_0492PNAP_3400PNAP_0176PNAP_0197
PMUL272843 PM1927PM1928PM1929PM1216PM1922PM1923PM1926PM1925PM1924PM1927
PMEN399739 PMEN_3801PMEN_3794PMEN_3793PMEN_3792PMEN_3788PMEN_3800PMEN_3799PMEN_3795PMEN_3797PMEN_3798PMEN_3794
PLUM243265 PLU1300PLU1294PLU1293PLU1292PLU1301PLU1299PLU1298PLU1295PLU1296PLU1297PLU1294
PING357804 PING_1188PING_3027PING_3028PING_3029PING_1189PING_1137PING_1136PING_1133PING_1134PING_1135PING_3027
PHAL326442 PSHAA1028PSHAA1022PSHAA1021PSHAA1020PSHAA1029PSHAA1027PSHAA1026PSHAA1023PSHAA1024PSHAA1025PSHAA1022
PFLU220664 PFL_5455PFL_5448PFL_5446PFL_5441PFL_5454PFL_5453PFL_5449PFL_5451PFL_5452PFL_5448
PFLU216595 PFLU5426PFLU5419PFLU5417PFLU5412PFLU5425PFLU5424PFLU5420PFLU5422PFLU5423PFLU5419
PFLU205922 PFL_4973PFL_4966PFL_4964PFL_4959PFL_4972PFL_4971PFL_0834PFL_4969PFL_4970PFL_4966
PENT384676 PSEEN4829PSEEN4822PSEEN4820PSEEN4815PSEEN4828PSEEN4827PSEEN4823PSEEN4825PSEEN4826PSEEN4822
PATL342610 PATL_1563PATL_1556PATL_1555PATL_1554PATL_1564PATL_1562PATL_1561PATL_1557PATL_1559PATL_1560PATL_1556
PARC259536 PSYC_0195PSYC_0687PSYC_1262PSYC_1295PSYC_0194PSYC_0390PSYC_0928PSYC_0929PSYC_1563PSYC_0687
PAER208964 PA4006PA3999PA3998PA3997PA3989PA4005PA4004PA4000PA4002PA4003PA3999
PAER208963 PA14_12020PA14_12100PA14_12110PA14_12120PA14_12200PA14_12030PA14_12050PA14_12090PA14_12070PA14_12060PA14_12100
NMUL323848 NMUL_A0360NMUL_A1991NMUL_A1989NMUL_A1988NMUL_A0513NMUL_A0361NMUL_A0362NMUL_A0315NMUL_A0316NMUL_A0317NMUL_A1991
NMEN374833 NMCC_0175NMCC_0839NMCC_1098NMCC_1096NMCC_0667NMCC_0176NMCC_0177NMCC_1878NMCC_0839
NMEN272831 NMC2003NMC0818NMC1112NMC1111NMC0658NMC2002NMC2001NMC0261NMC0818
NMEN122587 NMA0416NMA1095NMA1380NMA1379NMA0913NMA0417NMA0418NMA2219NMA1095
NMEN122586 NMB_2024NMB_0877NMB_1218NMB_1217NMB_0708NMB_2023NMB_2022NMB_0267NMB_0877
NGON242231 NGO2080NGO0443NGO0791NGO0792NGO0283NGO2081NGO2082NGO1728NGO0443
NEUT335283 NEUT_1610NEUT_0761NEUT_0759NEUT_0758NEUT_1427NEUT_1611NEUT_1612NEUT_1587NEUT_1588NEUT_1589NEUT_0761
NEUR228410 NE0359NE1485NE1487NE1488NE1137NE0358NE0357NE2065NE2066NE2067NE1485
MSUC221988 MS1829MS1828MS1827MS0332MS1834MS1833MS1830MS1831MS1832MS1829
MSP400668 MMWYL1_2851MMWYL1_2844MMWYL1_2842MMWYL1_2917MMWYL1_2850MMWYL1_2849MMWYL1_2845MMWYL1_2847MMWYL1_2848MMWYL1_2844
MPET420662 MPE_A1340MPE_A0311MPE_A0315MPE_A0216MPE_A1341MPE_A1342MPE_A3528MPE_A0079MPE_A0080MPE_A0311
MFLA265072 MFLA_2159MFLA_2497MFLA_2499MFLA_2500MFLA_2157MFLA_0593MFLA_0592MFLA_2496MFLA_2495MFLA_2494MFLA_2497
MCAP243233 MCA_1879MCA_0105MCA_0107MCA_0109MCA_1451MCA_2027MCA_0377MCA_2972MCA_0104MCA_0103MCA_0105
MAQU351348 MAQU_2416MAQU_2410MAQU_2409MAQU_2408MAQU_2746MAQU_2415MAQU_2414MAQU_2411MAQU_2412MAQU_2413MAQU_2410
LPNE400673 LPC_0761LPC_0928LPC_0931LPC_0793LPC_0792LPC_0927LPC_0790LPC_0791LPC_0928
LPNE297246 LPP1299LPP1466LPP1469LPP1332LPP1331LPP1465LPP1328LPP1329LPP1466
LPNE297245 LPL1298LPL1517LPL1514LPL1299LPL1328LPL1327LPL1518LPL1325LPL1326LPL1517
LPNE272624 LPG1345LPG1509LPG1511LPG1346LPG1377LPG1376LPG1508LPG1374LPG1375LPG1509
LCHO395495 LCHO_1950LCHO_4237LCHO_4239LCHO_0400LCHO_0481LCHO_1949LCHO_1948LCHO_1244LCHO_0500LCHO_0501LCHO_4237
KPNE272620 GKPORF_B5095GKPORF_B1730GKPORF_B5087GKPORF_B5086GKPORF_B5096GKPORF_B5093GKPORF_B5092GKPORF_B5089GKPORF_B5090GKPORF_B0907GKPORF_B5088
JSP375286 MMA_0541MMA_3248MMA_3250MMA_3251MMA_2898MMA_0540MMA_0539MMA_0201MMA_0200MMA_0199MMA_3248
ILOI283942 IL0950IL0957IL0958IL0959IL0949IL0951IL0952IL0956IL0954IL0953IL0957
HSOM205914 HS_0318HS_0317HS_0316HS_1555HS_0323HS_0322HS_0319HS_0320HS_0321HS_0318
HINF71421 HI_0029HI_0028HI_0027HI_0923HI_0034HI_0033HI_0030HI_0031HI_0032HI_0029
HINF374930 CGSHIEE_03165CGSHIEE_03170CGSHIEE_03175CGSHIEE_07400CGSHIEE_03140CGSHIEE_03145CGSHIEE_03160CGSHIEE_03155CGSHIEE_03150CGSHIEE_03165
HINF281310 NTHI0036NTHI0035NTHI0034NTHI1092NTHI0042NTHI0041NTHI0037NTHI0038NTHI0039NTHI0036
HHAL349124 HHAL_2141HHAL_1012HHAL_1014HHAL_1015HHAL_2143HHAL_2140HHAL_2139HHAL_1011HHAL_1009HHAL_1008HHAL_1012
HDUC233412 HD_2016HD_2015HD_2013HD_1130HD_2023HD_2022HD_2017HD_2019HD_2020HD_2016
HCHE349521 HCH_05846HCH_05839HCH_05837HCH_05357HCH_05845HCH_05844HCH_05840HCH_05842HCH_05843HCH_05839
HARS204773 HEAR0555HEAR2999HEAR3001HEAR3002HEAR2663HEAR0554HEAR0553HEAR0173HEAR0172HEAR0171HEAR2999
ESP42895 ENT638_1173ENT638_2578ENT638_1166ENT638_1165ENT638_1174ENT638_1172ENT638_1171ENT638_1168ENT638_1169ENT638_1170ENT638_1167
EFER585054 EFER_2467EFER_2473EFER_2474EFER_2475EFER_2466EFER_2468EFER_2469EFER_2472EFER_2471EFER_2470EFER_2473
ECOO157 YBENDACDYBEDLIPBHOLAYBEBYBEARLPAMRDBMRDADACA
ECOL83334 ECS0677ECS2812ECS0669ECS0668ECS0678ECS0675ECS0674ECS0671ECS0672ECS0673ECS0670
ECOL585397 ECED1_0636ECED1_2361ECED1_0627ECED1_0626ECED1_0637ECED1_0634ECED1_0633ECED1_0630ECED1_0631ECED1_0632ECED1_0628
ECOL585057 ECIAI39_0614ECIAI39_1006ECIAI39_0606ECIAI39_0605ECIAI39_0615ECIAI39_0612ECIAI39_0611ECIAI39_0608ECIAI39_0609ECIAI39_0610ECIAI39_0607
ECOL585056 ECUMN_0733ECUMN_2356ECUMN_0724ECUMN_0723ECUMN_0734ECUMN_0731ECUMN_0730ECUMN_0727ECUMN_0728ECUMN_0729ECUMN_0725
ECOL585055 EC55989_0631EC55989_2269EC55989_0623EC55989_0622EC55989_0632EC55989_0629EC55989_0628EC55989_0625EC55989_0626EC55989_0627EC55989_0624
ECOL585035 ECS88_0681ECS88_2109ECS88_0672ECS88_0671ECS88_0682ECS88_0679ECS88_0678ECS88_0675ECS88_0676ECS88_0677ECS88_0673
ECOL585034 ECIAI1_0623ECIAI1_2080ECIAI1_0614ECIAI1_0613ECIAI1_0624ECIAI1_0621ECIAI1_0620ECIAI1_0617ECIAI1_0618ECIAI1_0619ECIAI1_0615
ECOL481805 ECOLC_3006ECOLC_1630ECOLC_3014ECOLC_3015ECOLC_3005ECOLC_3008ECOLC_3009ECOLC_3012ECOLC_3011ECOLC_3010ECOLC_3013
ECOL469008 ECBD_3012ECBD_1647ECBD_3020ECBD_3021ECBD_3011ECBD_3014ECBD_3015ECBD_3018ECBD_3017ECBD_3016ECBD_3019
ECOL439855 ECSMS35_0659ECSMS35_1051ECSMS35_0651ECSMS35_0650ECSMS35_0660ECSMS35_0657ECSMS35_0656ECSMS35_0653ECSMS35_0654ECSMS35_0655ECSMS35_0652
ECOL413997 ECB_00608ECB_01913ECB_00600ECB_00599ECB_00609ECB_00606ECB_00605ECB_00602ECB_00603ECB_00604ECB_00601
ECOL409438 ECSE_0708ECSE_2283ECSE_0698ECSE_0697ECSE_0709ECSE_0705ECSE_0704ECSE_0701ECSE_0702ECSE_0703ECSE_0699
ECOL405955 APECO1_1416APECO1_1108APECO1_1424APECO1_1425APECO1_1415APECO1_1419APECO1_1422APECO1_1421APECO1_1420APECO1_1423
ECOL364106 UTI89_C0642UTI89_C0634UTI89_C0633UTI89_C0632UTI89_C0643UTI89_C0639UTI89_C0638UTI89_C0635UTI89_C0636UTI89_C0637UTI89_C0634
ECOL362663 ECP_0669ECP_2054ECP_0661ECP_0660ECP_0670ECP_0667ECP_0666ECP_0663ECP_0664ECP_0665ECP_0662
ECOL331111 ECE24377A_0665ECE24377A_2301ECE24377A_0656ECE24377A_0655ECE24377A_0666ECE24377A_0663ECE24377A_0662ECE24377A_0658ECE24377A_0660ECE24377A_0661ECE24377A_0657
ECOL316407 ECK0632:JW0634:B0639ECK2004:JW5329:B2010ECK0624:JW0626:B0631ECK0623:JW5089:B0630ECK0633:JW0635:B0640ECK0630:JW5090:B0637ECK0629:JW0631:B0636ECK0626:JW0628:B0633ECK0627:JW0629:B0634ECK0628:JW0630:B0635ECK0625:JW0627:B0632
ECOL199310 C0730C2538C0721C0720C0731C0728C0727C0724C0725C0726C0722
ECAR218491 ECA1306ECA1300ECA1299ECA1298ECA1307ECA1305ECA1304ECA1301ECA1302ECA1303ECA1300
DNOD246195 DNO_0899DNO_0897DNO_0244DNO_0467DNO_0935DNO_0961DNO_0963DNO_0964DNO_0899
DARO159087 DARO_0169DARO_0291DARO_0289DARO_0288DARO_0542DARO_0170DARO_0171DARO_0111DARO_0112DARO_0113DARO_0291
CVIO243365 CV_0519CV_3094CV_3095CV_3096CV_0507CV_0518CV_0517CV_4384CV_4361CV_4360CV_3094
CSAL290398 CSAL_1542CSAL_1549CSAL_1550CSAL_1551CSAL_2346CSAL_1543CSAL_1544CSAL_1548CSAL_1546CSAL_1545CSAL_1549
CPSY167879 CPS_1718CPS_1712CPS_1711CPS_1710CPS_1720CPS_1717CPS_1716CPS_1713CPS_1714CPS_1715CPS_1712
CJAP155077 CJA_0786CJA_0793CJA_0795CJA_0796CJA_0452CJA_0787CJA_0788CJA_0792CJA_0790CJA_0789CJA_0793
CBUR434922 COXBU7E912_1509COXBU7E912_1345COXBU7E912_1346COXBU7E912_1350COXBU7E912_1508COXBU7E912_1511COXBU7E912_1512COXBU7E912_1060COXBU7E912_1514COXBU7E912_1513COXBU7E912_1345
CBUR360115 COXBURSA331_A0670COXBURSA331_A1408COXBURSA331_A1409COXBURSA331_A1413COXBURSA331_A0671COXBURSA331_A0666COXBURSA331_A0952COXBURSA331_A0663COXBURSA331_A0664COXBURSA331_A1408
CBUR227377 CBU_0556CBU_1261CBU_1262CBU_1265CBU_0557CBU_0552CBU_0987CBU_0549CBU_0550CBU_1261
BVIE269482 BCEP1808_2382BCEP1808_2989BCEP1808_2987BCEP1808_2984BCEP1808_0624BCEP1808_2383BCEP1808_2384BCEP1808_0246BCEP1808_3198BCEP1808_3197BCEP1808_2989
BTHA271848 BTH_I1012BTH_I0380BTH_I0382BTH_I0385BTH_I1213BTH_I1011BTH_I1010BTH_I3150BTH_I0142BTH_I0143BTH_I0380
BSP36773 BCEP18194_A5624BCEP18194_A6236BCEP18194_A6234BCEP18194_A6231BCEP18194_A3742BCEP18194_A5625BCEP18194_A5626BCEP18194_A3389BCEP18194_A6465BCEP18194_A6464BCEP18194_A6236
BPSE320373 BURPS668_1228BURPS668_0438BURPS668_0443BURPS668_3413BURPS668_1227BURPS668_1226BURPS668_3821BURPS668_0166BURPS668_0167BURPS668_0438
BPSE320372 BURPS1710B_A1456BURPS1710B_A0662BURPS1710B_A0664BURPS1710B_A0667BURPS1710B_A3726BURPS1710B_A1455BURPS1710B_A1454BURPS1710B_A0047BURPS1710B_A0384BURPS1710B_A0385BURPS1710B_A0662
BPSE272560 BPSL1162BPSL0408BPSL0410BPSL0413BPSL2936BPSL1161BPSL1160BPSL3276BPSL0182BPSL0183BPSL0408
BPET94624 BPET3102BPET3320BPET4805BPET4804BPET3326BPET3103BPET3104BPET0442BPET0431BPET0430BPET3320
BPER257313 BP2311BP0102BP0104BP0105BP2042BP2312BP2313BP0689BP0378BP0377BP0102
BPAR257311 BPP2419BPP0166BPP0168BPP0169BPP1729BPP2418BPP2417BPP4039BPP4052BPP4053BPP0166
BMAL320389 BMA10247_0355BMA10247_3192BMA10247_3190BMA10247_3187BMA10247_2638BMA10247_0354BMA10247_0353BMA10247_2970BMA10247_2370BMA10247_2371BMA10247_3192
BMAL320388 BMASAVP1_A1072BMASAVP1_A0224BMASAVP1_A0222BMASAVP1_A0219BMASAVP1_A0368BMASAVP1_A1071BMASAVP1_A1070BMASAVP1_A3399BMASAVP1_A2789BMASAVP1_A2788BMASAVP1_A0224
BMAL243160 BMA_1887BMA_0058BMA_0056BMA_0053BMA_2451BMA_1888BMA_1889BMA_2911BMA_0158BMA_0159BMA_0058
BCEN331272 BCEN2424_2297BCEN2424_2893BCEN2424_2891BCEN2424_2888BCEN2424_0656BCEN2424_2298BCEN2424_2299BCEN2424_0286BCEN2424_3114BCEN2424_3113BCEN2424_2893
BCEN331271 BCEN_1685BCEN_2278BCEN_2276BCEN_2273BCEN_0173BCEN_1686BCEN_1687BCEN_2820BCEN_2500BCEN_2499BCEN_2278
BBRO257310 BB1868BB0168BB0170BB0171BB3379BB1867BB1866BB4512BB4525BB4526BB0168
BAMB398577 BAMMC406_2214BAMMC406_2805BAMMC406_2803BAMMC406_2800BAMMC406_0577BAMMC406_2215BAMMC406_2216BAMMC406_0214BAMMC406_3052BAMMC406_3051BAMMC406_2805
BAMB339670 BAMB_2335BAMB_2943BAMB_2941BAMB_2938BAMB_0551BAMB_2336BAMB_2337BAMB_0200BAMB_3169BAMB_3168BAMB_2943
ASP76114 EBA3972EBA3044EBD70EBA3048EBA4383EBA3971EBA3968EBA3043EBA3041EBA3040EBA3044
ASP62977 ACIAD1225ACIAD2926ACIAD2927ACIAD3108ACIAD3076ACIAD1113ACIAD2265ACIAD2263ACIAD1101ACIAD1225
ASP62928 AZO3607AZO0180AZO0182AZO0183AZO3217AZO3608AZO3609AZO0179AZO0178AZO0177AZO0180
ASP232721 AJS_0272AJS_0300AJS_0299AJS_3915AJS_1901AJS_1902AJS_0622AJS_3647AJS_0242AJS_0272
ASAL382245 ASA_1065ASA_1058ASA_1057ASA_1056ASA_1066ASA_1064ASA_1063ASA_1059ASA_1061ASA_1062ASA_1058
APLE434271 APJL_1629APJL_1628APJL_1627APJL_0886APJL_1634APJL_1633APJL_1630APJL_1631APJL_1632APJL_1629
APLE416269 APL_1596APL_1595APL_1594APL_0874APL_1601APL_1600APL_1597APL_1598APL_1599APL_1596
AHYD196024 AHA_3251AHA_3259AHA_3260AHA_3261AHA_3250AHA_3252AHA_3253AHA_3258AHA_3255AHA_3254AHA_3259
AFER243159 AFE_0161AFE_0535AFE_0533AFE_2580AFE_0160AFE_0159AFE_0189AFE_0536AFE_0537AFE_0535
AEHR187272 MLG_0404MLG_0176MLG_0179MLG_0402MLG_0405MLG_0406MLG_0175MLG_0173MLG_0172MLG_0176
ABOR393595 ABO_1952ABO_1959ABO_1963ABO_1949ABO_1953ABO_1954ABO_1958ABO_1956ABO_1955ABO_1959
ABAU360910 BAV2210BAV0135BAV0137BAV0138BAV2494BAV2211BAV2212BAV3159BAV3172BAV3173BAV0135
AAVE397945 AAVE_0332AAVE_0364AAVE_0363AAVE_4546AAVE_3200AAVE_3199AAVE_4056AAVE_0846AAVE_0297AAVE_0332


Organism features enriched in list (features available for 166 out of the 174 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00009261292
Arrangment:Pairs 0.003579643112
Arrangment:Singles 0.005145794286
Disease:Bubonic_plague 0.000499166
Disease:Dysentery 0.000499166
Disease:Gastroenteritis 0.00031591013
Disease:Legionnaire's_disease 0.006403744
Disease:Meningitis_and_septicemia 0.006403744
Endospores:No 1.933e-832211
GC_Content_Range4:0-40 9.243e-2511213
GC_Content_Range4:40-60 6.065e-13102224
GC_Content_Range4:60-100 0.004083653145
GC_Content_Range7:30-40 9.253e-1611166
GC_Content_Range7:40-50 0.008136243117
GC_Content_Range7:50-60 6.991e-1159107
GC_Content_Range7:60-70 0.000549053134
Genome_Size_Range5:0-2 5.139e-205155
Genome_Size_Range5:2-4 0.000136638197
Genome_Size_Range5:4-6 3.150e-20100184
Genome_Size_Range5:6-10 0.00101712347
Genome_Size_Range9:1-2 4.011e-155128
Genome_Size_Range9:3-4 0.00518961377
Genome_Size_Range9:4-5 1.685e-74996
Genome_Size_Range9:5-6 1.926e-105188
Genome_Size_Range9:6-8 0.00006212238
Gram_Stain:Gram_Neg 2.541e-33155333
Habitat:Specialized 0.0036158753
Motility:No 5.892e-1114151
Motility:Yes 2.132e-10110267
Optimal_temp.:35-37 2.011e-61213
Oxygen_Req:Anaerobic 5.843e-106102
Oxygen_Req:Facultative 8.276e-987201
Pathogenic_in:Animal 0.00752672766
Pathogenic_in:No 8.241e-642226
Pathogenic_in:Plant 0.00030021115
Shape:Coccobacillus 0.0023994811
Shape:Coccus 8.853e-6882
Shape:Rod 1.033e-13137347
Shape:Spiral 0.0007839234
Temp._range:Mesophilic 0.0002277149473
Temp._range:Psychrophilic 0.002609479
Temp._range:Thermophilic 0.0000798135



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ORGANISMS CONTAINING AT MOST 2 GENES FROM THE GROUP:

Total number of orgs: 124
Effective number of orgs (counting one per cluster within 468 clusters): 98

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 102
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/272
TWHI203267 ncbi Tropheryma whipplei Twist2
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSUI391296 ncbi Streptococcus suis 98HAH332
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153052
SPYO370552 ncbi Streptococcus pyogenes MGAS102702
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-62
SMAR399550 ncbi Staphylothermus marinus F10
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122282
SEPI176279 ncbi Staphylococcus epidermidis RP62A2
SCO ncbi Streptomyces coelicolor A3(2)1
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83252
SAUR426430 ncbi Staphylococcus aureus aureus Newman2
SAUR418127 ncbi Staphylococcus aureus aureus Mu32
SAUR367830 Staphylococcus aureus aureus USA3002
SAUR359787 ncbi Staphylococcus aureus aureus JH12
SAUR359786 ncbi Staphylococcus aureus aureus JH92
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4762
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2522
SAUR273036 ncbi Staphylococcus aureus RF1222
SAUR196620 ncbi Staphylococcus aureus aureus MW22
SAUR158879 ncbi Staphylococcus aureus aureus N3152
SAUR158878 ncbi Staphylococcus aureus aureus Mu502
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332092
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97901
PSP117 Pirellula sp.2
PMOB403833 ncbi Petrotoga mobilis SJ952
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PABY272844 ncbi Pyrococcus abyssi GE50
NSEN222891 ncbi Neorickettsia sennetsu Miyayama2
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 532
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS2
MSP164757 ncbi Mycobacterium sp. JLS2
MSP164756 ncbi Mycobacterium sp. MCS2
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-22
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN2
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
KRAD266940 ncbi Kineococcus radiotolerans SRS302162
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRAD243230 ncbi Deinococcus radiodurans R12
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130322
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3142
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131292
CCAV227941 ncbi Chlamydophila caviae GPIC1
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)2
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40182
AAUR290340 ncbi Arthrobacter aurescens TC12


Names of the homologs of the genes in the group in each of these orgs
  G6350   EG11893   EG11592   EG11591   EG11412   EG11255   EG11254   EG10854   EG10607   EG10606   EG10201   
UURE95667 UU469
UURE95664 UUR10_0526UUR10_0171
UPAR505682
UMET351160
TWHI218496 TW0277TW0283
TWHI203267 TW469TW463
TVOL273116
TPEN368408
TKOD69014
TACI273075
STOK273063
SSUI391296 SSU98_0360SSU98_0365
SSOL273057
SSAP342451 SSP1166SSP0026
SPYO370552 MGAS10270_SPY0260MGAS10270_SPY0262
SPNE487214 SPH_1856SPH_1853
SMAR399550
SEPI176280 SE_1280SE_0023
SEPI176279 SERP1161SERP2529
SCO SCO2579
SAUR93062 SACOL1650
SAUR93061 SAOUHSC_01697SAOUHSC_00027
SAUR426430 NWMN_1496NWMN_0023
SAUR418127 SAHV_1581SAHV_0024
SAUR367830 SAUSA300_1553SAUSA300_0026
SAUR359787 SAURJH1_1686SAURJH1_0024
SAUR359786 SAURJH9_1651SAURJH9_0024
SAUR282459 SAS1531SAS0024
SAUR282458 SAR1671SAR0024
SAUR273036 SAB1466CSAB0024
SAUR196620 MW1545MW0024
SAUR158879 SA1422SA0023
SAUR158878 SAV1594SAV0024
SACI330779
RSAL288705 RSAL33209_3243RSAL33209_2442
RALB246199 GRAORF_4034
PTOR263820 PTO1260
PSP117 RB8455RB5749
PMOB403833 PMOB_1028PMOB_1422
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102 PARS_1183
PAER178306 PAE2651
PABY272844
NSEN222891 NSE_0100NSE_0919
NPHA348780
MTHE349307 MTHE_1412
MTHE187420
MSYN262723 MS53_0319MS53_0516
MSTA339860
MSP189918 MKMS_3603MKMS_3377
MSP164757 MJLS_3535MJLS_3326
MSP164756 MMCS_3530MMCS_3315
MSED399549
MPUL272635 MYPU_3350
MPNE272634
MPEN272633 MYPE5200MYPE5180
MMYC272632 MSC_0424
MMOB267748 MMOB2760
MMAZ192952
MMAR444158 MMARC6_1622
MMAR426368 MMARC7_0291
MMAR402880 MMARC5_0556
MMAR368407
MMAR267377 MMP1037
MLEP272631 ML1454ML0859
MLAB410358 MLAB_0677
MKAN190192
MJAN243232
MHYO295358 MHP474
MHYO262722
MHYO262719
MHUN323259 MHUN_2595
MGEN243273
MFLO265311 MFL373
MCAP340047 MCAP_0548
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
KRAD266940 KRAD_3450KRAD_3284
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMAR272569
HBUT415426
ERUM302409 ERGA_CDS_06580
ERUM254945 ERWE_CDS_06670
DSP255470 CBDBA3
DSP216389 DEHABAV1_0003
DRAD243230 DR_0764DR_0619
DETH243164 DET_0003
CTRA471473 CTLON_0138
CTRA471472 CTL0138
CSUL444179 SMGWSS_001
CPRO264201 PC1239
CPNE182082 CPB0947
CPNE138677 CPJ0915
CPNE115713 CPN0915
CPNE115711 CP_0951
CMUR243161 TC_0150
CMET456442 MBOO_2340
CMAQ397948
CKOR374847
CGLU196627 CG2584CG2422
CFEL264202 CF0162
CEFF196164 CE2257CE2099
CDIP257309 DIP1775DIP1640
CCAV227941 CCA_00854
CABO218497 CAB819
BXEN266265
BAPH372461 BCC_307BCC_169
AYEL322098
AURANTIMONAS
APER272557
ALAI441768 ACL_0212
AFUL224325
ABUT367737 ABU_0976ABU_0996
AAUR290340 AAUR_2361AAUR_1748


Organism features enriched in list (features available for 117 out of the 124 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0002874792
Arrangment:Clusters 1.483e-91517
Disease:Pharyngitis 2.162e-688
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 1.440e-81111
Disease:bronchitis_and_pneumonitis 2.162e-688
Endospores:No 7.329e-1883211
Endospores:Yes 0.0000553153
GC_Content_Range4:0-40 0.000873457213
GC_Content_Range4:60-100 0.000509616145
GC_Content_Range7:0-30 0.00046171947
GC_Content_Range7:60-70 0.000442714134
Genome_Size_Range5:0-2 1.812e-1161155
Genome_Size_Range5:4-6 1.433e-128184
Genome_Size_Range5:6-10 0.0055331347
Genome_Size_Range9:0-1 7.658e-91927
Genome_Size_Range9:1-2 0.000044642128
Genome_Size_Range9:2-3 0.001249236120
Genome_Size_Range9:4-5 1.490e-6496
Genome_Size_Range9:5-6 8.457e-6488
Genome_Size_Range9:6-8 0.0015156138
Gram_Stain:Gram_Neg 5.218e-1234333
Habitat:Multiple 1.906e-616178
Habitat:Specialized 0.00010122253
Motility:No 1.421e-651151
Motility:Yes 0.000095436267
Optimal_temp.:- 2.437e-630257
Optimal_temp.:100 0.007917233
Optimal_temp.:30-37 1.230e-71418
Optimal_temp.:35-40 0.007917233
Optimal_temp.:85 0.001556144
Oxygen_Req:Aerobic 0.000039520185
Oxygen_Req:Anaerobic 0.000084635102
Pathogenic_in:Ruminant 0.007917233
Pathogenic_in:Swine 0.006262245
Salinity:Extreme_halophilic 0.004143957
Shape:Coccus 2.888e-63382
Shape:Irregular_coccus 5.184e-131717
Shape:Pleomorphic 0.008901658
Shape:Rod 2.451e-1532347
Shape:Sphere 1.564e-91619
Shape:Spiral 0.0035147134
Temp._range:Hyperthermophilic 1.621e-81723
Temp._range:Mesophilic 0.000987383473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 23
Effective number of orgs (counting one per cluster within 468 clusters): 19

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-111 0.0000354105311
NEUR228410 ncbi Nitrosomonas europaea ATCC 19718 0.0003725130311
NEUT335283 ncbi Nitrosomonas eutropha C91 0.0003919130911
NMUL323848 ncbi Nitrosospira multiformis ATCC 25196 0.0006966137911
HHAL349124 ncbi Halorhodospira halophila SL1 0.0007022138011
CBUR360115 ncbi Coxiella burnetii RSA 331 0.000791999710
CBUR227377 ncbi Coxiella burnetii RSA 493 0.0009081101110
WPIP80849 Wolbachia endosymbiont of Brugia malayi 0.00095703337
AMAR234826 ncbi Anaplasma marginale St. Maries 0.00121853457
MFLA265072 ncbi Methylobacillus flagellatus KT 0.0017888150211
TDEN292415 ncbi Thiobacillus denitrificans ATCC 25259 0.0018421150611
MCAP243233 ncbi Methylococcus capsulatus Bath 0.0018830150911
WPIP955 Wolbachia pipientis 0.00247943837
XFAS405440 ncbi Xylella fastidiosa M12 0.0040244117710
ILOI283942 ncbi Idiomarina loihiensis L2TR 0.0040378161711
XFAS183190 ncbi Xylella fastidiosa Temecula1 0.0044434118910
XFAS160492 ncbi Xylella fastidiosa 9a5c 0.0055317121610
SDEG203122 ncbi Saccharophagus degradans 2-40 0.0058017167111
HARS204773 ncbi Herminiimonas arsenicoxydans 0.0068345169611
ASP76114 ncbi Aromatoleum aromaticum EbN1 0.0075805171211
CJAP155077 Cellvibrio japonicus 0.0080319172111
DNOD246195 ncbi Dichelobacter nodosus VCS1703A 0.00970769499
BPER257313 ncbi Bordetella pertussis Tohama I 0.0099666175511


Names of the homologs of the genes in the group in each of these orgs
  G6350   EG11893   EG11592   EG11591   EG11412   EG11255   EG11254   EG10854   EG10607   EG10606   EG10201   
CBUR434922 COXBU7E912_1509COXBU7E912_1345COXBU7E912_1346COXBU7E912_1350COXBU7E912_1508COXBU7E912_1511COXBU7E912_1512COXBU7E912_1060COXBU7E912_1514COXBU7E912_1513COXBU7E912_1345
NEUR228410 NE0359NE1485NE1487NE1488NE1137NE0358NE0357NE2065NE2066NE2067NE1485
NEUT335283 NEUT_1610NEUT_0761NEUT_0759NEUT_0758NEUT_1427NEUT_1611NEUT_1612NEUT_1587NEUT_1588NEUT_1589NEUT_0761
NMUL323848 NMUL_A0360NMUL_A1991NMUL_A1989NMUL_A1988NMUL_A0513NMUL_A0361NMUL_A0362NMUL_A0315NMUL_A0316NMUL_A0317NMUL_A1991
HHAL349124 HHAL_2141HHAL_1012HHAL_1014HHAL_1015HHAL_2143HHAL_2140HHAL_2139HHAL_1011HHAL_1009HHAL_1008HHAL_1012
CBUR360115 COXBURSA331_A0670COXBURSA331_A1408COXBURSA331_A1409COXBURSA331_A1413COXBURSA331_A0671COXBURSA331_A0666COXBURSA331_A0952COXBURSA331_A0663COXBURSA331_A0664COXBURSA331_A1408
CBUR227377 CBU_0556CBU_1261CBU_1262CBU_1265CBU_0557CBU_0552CBU_0987CBU_0549CBU_0550CBU_1261
WPIP80849 WB_0447WB_0369WB_0383WB_0192WB_0023WB_0118WB_0447
AMAR234826 AM1091AM941AM980AM590AM005AM1196AM1091
MFLA265072 MFLA_2159MFLA_2497MFLA_2499MFLA_2500MFLA_2157MFLA_0593MFLA_0592MFLA_2496MFLA_2495MFLA_2494MFLA_2497
TDEN292415 TBD_2441TBD_0647TBD_0268TBD_0269TBD_2443TBD_2440TBD_2439TBD_0265TBD_0264TBD_0263TBD_0647
MCAP243233 MCA_1879MCA_0105MCA_0107MCA_0109MCA_1451MCA_2027MCA_0377MCA_2972MCA_0104MCA_0103MCA_0105
WPIP955 WD_0098WD_1014WD_1117WD_0496WD_1108WD_0719WD_0098
XFAS405440 XFASM12_1379XFASM12_1430XFASM12_0600XFASM12_1378XFASM12_1380XFASM12_1884XFASM12_1386XFASM12_0672XFASM12_0671XFASM12_1430
ILOI283942 IL0950IL0957IL0958IL0959IL0949IL0951IL0952IL0956IL0954IL0953IL0957
XFAS183190 PD_1233PD_1277PD_0531PD_1232PD_1234PD_1712PD_1236PD_0561PD_0560PD_1277
XFAS160492 XF2179XF2230XF1270XF2178XF2180XF0338XF2185XF1313XF1312XF2230
SDEG203122 SDE_3344SDE_3337SDE_3336SDE_3335SDE_3310SDE_3343SDE_3342SDE_3338SDE_3340SDE_3341SDE_3337
HARS204773 HEAR0555HEAR2999HEAR3001HEAR3002HEAR2663HEAR0554HEAR0553HEAR0173HEAR0172HEAR0171HEAR2999
ASP76114 EBA3972EBA3044EBD70EBA3048EBA4383EBA3971EBA3968EBA3043EBA3041EBA3040EBA3044
CJAP155077 CJA_0786CJA_0793CJA_0795CJA_0796CJA_0452CJA_0787CJA_0788CJA_0792CJA_0790CJA_0789CJA_0793
DNOD246195 DNO_0899DNO_0897DNO_0244DNO_0467DNO_0935DNO_0961DNO_0963DNO_0964DNO_0899
BPER257313 BP2311BP0102BP0104BP0105BP2042BP2312BP2313BP0689BP0378BP0377BP0102


Organism features enriched in list (features available for 20 out of the 23 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Citrus_variegated_chlorosis 0.001119922
Disease:Q_fever 0.001119922
Endospores:No 0.00123701211
GC_Content_Range4:40-60 0.000674715224
Genome_Size_Range5:2-4 0.000132315197
Genome_Size_Range9:2-3 0.000085412120
Gram_Stain:Gram_Neg 0.005976517333
Optimal_temp.:26-28 0.001119922
Shape:Coccobacillus 0.0002755411



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181530.6910
GLYCOCAT-PWY (glycogen degradation I)2461560.6389
AST-PWY (arginine degradation II (AST pathway))1201030.6304
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001700.6173
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951300.5828
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761220.5789
PWY-1269 (CMP-KDO biosynthesis I)3251710.5746
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911600.5645
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961610.5612
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251380.5598
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901590.5595
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911250.5560
PWY-5918 (heme biosynthesis I)2721530.5557
PWY-4041 (γ-glutamyl cycle)2791550.5545
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861550.5393
PWY-5386 (methylglyoxal degradation I)3051600.5354
GLUCONSUPER-PWY (D-gluconate degradation)2291360.5346
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481710.5318
PWY-5913 (TCA cycle variation IV)3011570.5222
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391670.5195
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81710.5146
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491400.5146
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491400.5146
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831160.5097
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491020.5065
LIPASYN-PWY (phospholipases)2121240.4892
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911160.4862
PWY-5148 (acyl-CoA hydrolysis)2271280.4802
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291570.4666
GALACTITOLCAT-PWY (galactitol degradation)73620.4629
PWY0-981 (taurine degradation IV)106780.4608
TYRFUMCAT-PWY (tyrosine degradation I)1841100.4596
GLUCARDEG-PWY (D-glucarate degradation I)152960.4461
KDOSYN-PWY (KDO transfer to lipid IVA I)1801060.4399
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116800.4375
PWY0-1182 (trehalose degradation II (trehalase))70580.4356
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551310.4350
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791050.4349
DAPLYSINESYN-PWY (lysine biosynthesis I)3421560.4349
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981690.4308
PWY-3162 (tryptophan degradation V (side chain pathway))94690.4273
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94690.4273
P601-PWY (D-camphor degradation)95690.4226
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96690.4181
REDCITCYC (TCA cycle variation II)1741010.4179
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221720.4143
PWY-6134 (tyrosine biosynthesis IV)89650.4104
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001410.4097
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161700.4087
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50450.4087
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261480.4079
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112750.4073
PWY-5783 (octaprenyl diphosphate biosynthesis)165960.4047
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135840.4020
PWY-6196 (serine racemization)102700.4014
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91650.4010



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11893   EG11592   EG11591   EG11412   EG11255   EG11254   EG10854   EG10607   EG10606   EG10201   
G63500.9987010.9986820.9988680.9994910.999960.9996280.9990810.9993110.9992540.998986
EG118930.9996750.9996780.9986730.9988550.9986720.9997640.9994550.9993810.999979
EG115920.9997860.9986560.9990690.9991170.9994580.9994460.9993660.999733
EG115910.9989090.9988990.9989650.9994340.9993970.9993390.999725
EG114120.9993740.9992830.9990410.9991250.9990250.999
EG112550.9999270.9991350.9993790.9993280.999072
EG112540.9991970.9992920.9993110.998992
EG108540.9996710.9996160.999794
EG106070.9999350.999549
EG106060.999432
EG10201



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PAIRWISE BLAST SCORES:

  G6350   EG11893   EG11592   EG11591   EG11412   EG11255   EG11254   EG10854   EG10607   EG10606   EG10201   
G63500.0f0----------
EG11893-0.0f0--------3.1e-95
EG11592--0.0f0--------
EG11591---0.0f0-------
EG11412----0.0f0------
EG11255-----0.0f0-----
EG11254------0.0f0----
EG10854-------0.0f0---
EG10607--------0.0f0--
EG10606---------0.0f0-
EG10201-3.1e-95--------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10201 EG10606 EG10607 EG10854 EG11254 EG11255 EG11412 EG11591 EG11592 G6350 (centered at EG10606)
EG11893 (centered at EG11893)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6350   EG11893   EG11592   EG11591   EG11412   EG11255   EG11254   EG10854   EG10607   EG10606   EG10201   
400/623293/623148/623382/623193/623406/623403/623310/623351/623363/623298/623
AAEO224324:0:Tyes8----887-9630824-
AAUR290340:2:Tyes597--0-------
AAVE397945:0:Tyes-3567664179285828573693540035
ABAC204669:0:Tyes0--4321-13259214561455-
ABAU360910:0:Tyes20780232367207920803032304530460
ABOR393595:0:Tyes310-1404597610
ABUT367737:0:Tyes-------0-20-
ACAU438753:0:Tyes-1-676-198719860--1
ACEL351607:0:Tyes11--176----10-
ACRY349163:8:Tyes-0-2045--12997224084070
ADEH290397:0:Tyes2214--1624-020379623032304-
AEHR187272:0:Tyes2314-72292322333104
AFER243159:0:Tyes2371-36923821029372373371
AHYD196024:0:Tyes1910110238549
ALAI441768:0:Tyes------0----
AMAR234826:0:Tyes-783-682-708-4230859783
AMAR329726:9:Tyes---2628---010072975-
AMET293826:0:Tyes9211137-3041-9253361-0--
ANAE240017:0:Tyes0--389-2-----
AORE350688:0:Tyes1580----1258-510172-
APHA212042:0:Tyes-946-33-0----946
APLE416269:0:Tyes-7537527510758757754755756753
APLE434271:0:Tno-7807797780785784781782783780
ASAL382245:5:Tyes82109763452
ASP1667:3:Tyes775--0-773-----
ASP232721:2:Tyes-3058573586160916103753308030
ASP62928:0:Tyes34913563096349234932103
ASP62977:0:Tyes-121169116921856183110109310910121
ASP76114:2:Tyes5453567875445432103
AVAR240292:3:Tyes1359--2928---036291344-
BABO262698:0:Tno---0-------
BABO262698:1:Tno-1---8068050--1
BAFZ390236:2:Fyes70------17-0-
BAMB339670:3:Tno2204281828162813371220522060304430432818
BAMB398577:3:Tno2038263326312628376203920400287928782633
BAMY326423:0:Tyes19551720---19533275-106901720
BANT260799:0:Tno21311888---21293230-166501888
BANT261594:2:Tno21381889---21363214-164901889
BANT568206:2:Tyes39303676---39285049-017663676
BANT592021:2:Tno22542000---22523376-176102000
BAPH198804:0:Tyes167-2100166------
BAPH372461:0:Tyes--1350-------
BBAC264462:0:Tyes28501184-0----15671566-
BBAC360095:0:Tyes---543-01471---
BBRO257310:0:Tyes17180233231171717164387440044010
BBUR224326:21:Fno65------17-0-
BCAN483179:0:Tno---0-------
BCAN483179:1:Tno-1---838-0--1
BCEN331271:2:Tno15352132213021270153615372684235223512132
BCEN331272:3:Tyes2008260125992596369200920100282228212601
BCER226900:1:Tyes20851836---20833187-167401836
BCER288681:0:Tno20441798---20423139-163801798
BCER315749:1:Tyes13341057---13322230-84501057
BCER405917:1:Tyes20251766---20233171-158801766
BCER572264:1:Tno20941843---20923221-167401843
BCIC186490:0:Tyes1--40---32-
BCLA66692:0:Tyes0157---22464-721-157
BFRA272559:1:Tyes2741--1322-0656-31463147-
BFRA295405:0:Tno2970--1267-0700-33723373-
BGAR290434:2:Fyes66------17-0-
BHAL272558:0:Tyes0213---22700-12442082213
BHEN283166:0:Tyes-649-593-01648--649
BHER314723:0:Fyes67------18-0-
BJAP224911:0:Fyes-4114-4860-014116--4114
BLIC279010:0:Tyes20481798---20463558-08321798
BLON206672:0:Tyes64----0294----
BMAL243160:1:Tno163353021471634163525681001015
BMAL320388:1:Tno8405301498398383108251525145
BMAL320389:1:Tyes22777277527722235102560196819692777
BMEL224914:0:Tno---0-------
BMEL224914:1:Tno-799---01800--799
BMEL359391:0:Tno---0-------
BMEL359391:1:Tno-1---7787770--1
BOVI236:0:Tyes---0-------
BOVI236:1:Tyes-1---7287270--1
BPAR257311:0:Tno21600231495215921583712372437250
BPER257313:0:Tyes19700231727197119725222462450
BPET94624:0:Tyes269329194423442229252694269512102919
BPSE272560:1:Tyes9802252272302769979978311201225
BPSE320372:1:Tno13996106126143548139813970333334610
BPSE320373:1:Tno1035267-271313310341033352301267
BPUM315750:0:Tyes873654---8712253-0-654
BQUI283165:0:Tyes-0-40---1--0
BSP107806:2:Tyes175-2170174------
BSP36773:2:Tyes2285290229002897364228622870313131302902
BSP376:0:Tyes-3221-2687-103217--3221
BSUB:0:Tyes22762052---22743799-118902052
BSUI204722:0:Tyes---0-------
BSUI204722:1:Tyes8241---8238220--1
BSUI470137:0:Tno---0-694-----
BSUI470137:1:Tno-1-----0--1
BTHA271848:1:Tno8672382402431061866865294601238
BTHE226186:0:Tyes942--0-2977483-27782777-
BTHU281309:1:Tno20351784---20333098-162201784
BTHU412694:1:Tno18291609---18272842-146101609
BTRI382640:1:Tyes-875-1161-01874--875
BTUR314724:0:Fyes66------18-0-
BVIE269482:7:Tyes2119271827162713374212021210292729262718
BWEI315730:4:Tyes20571786---20553136-161901786
CABO218497:0:Tyes-----0-----
CACE272562:1:Tyes14803----2291-30803
CAULO:0:Tyes---635-1909191027810-
CBEI290402:0:Tyes0-----4464-105613701344
CBLO203907:0:Tyes----32--01-
CBLO291272:0:Tno----32--01-
CBOT36826:1:Tno23431214----2921-0-1214
CBOT441770:0:Tyes23111122----2892-0-1122
CBOT441771:0:Tno1228176----1811-0-176
CBOT441772:1:Tno22881143----2951-0-1143
CBOT498213:1:Tno23641153----2955-0-1153
CBOT508765:1:Tyes0-----2900-1841341766
CBOT515621:2:Tyes25051316----3100-0-1316
CBOT536232:0:Tno25701249----3189-0-1249
CBUR227377:1:Tyes667667768072-41501676
CBUR360115:1:Tno668768869272-26801687
CBUR434922:2:Tno4312722732774304334340436435272
CCAV227941:1:Tyes-----0-----
CCHL340177:0:Tyes-----0-16084881084-
CCON360104:2:Tyes-------71880-
CCUR360105:0:Tyes-------13021-
CDES477974:0:Tyes644177---642--2352390
CDIF272563:1:Tyes1394141---13922531-0-141
CDIP257309:0:Tyes134--0-------
CEFF196164:0:Fyes161--0-------
CFEL264202:1:Tyes-----0-----
CFET360106:0:Tyes-------8390-
CGLU196627:0:Tyes153--0-------
CHOM360107:1:Tyes-------09698-
CHUT269798:0:Tyes131--0-14522851732-2793-
CHYD246194:0:Tyes3201855---3230-2912781855
CJAP155077:0:Tyes3193263283290320321325323322326
CJEI306537:0:Tyes0--146-1-----
CJEJ192222:0:Tyes-------06156-
CJEJ195099:0:Tno-------06436-
CJEJ354242:2:Tyes-------06066-
CJEJ360109:0:Tyes-------8580852-
CJEJ407148:0:Tno-------06376-
CKLU431943:1:Tyes10--1385--1439-01843371
CMET456442:0:Tyes------0----
CMIC31964:2:Tyes2--68-0-----
CMIC443906:2:Tyes293--0-295-----
CMUR243161:1:Tyes-----0-----
CNOV386415:0:Tyes15341049----0----
CPEL335992:0:Tyes-778-870-0--11551156778
CPER195102:1:Tyes325-----864-336-0
CPER195103:0:Tno313-----801-324-0
CPER289380:3:Tyes311-----772-52-0
CPHY357809:0:Tyes1617-----0--1443-
CPNE115711:1:Tyes-----0-----
CPNE115713:0:Tno-----0-----
CPNE138677:0:Tno-----0-----
CPNE182082:0:Tno-----0-----
CPRO264201:0:Fyes-----0-----
CPSY167879:0:Tyes821010763452
CRUT413404:0:Tyes181312-3800180--313612312
CSAL290398:0:Tyes0789818126437
CSP501479:6:Fyes-----210211-10-
CSP501479:8:Fyes-1991-0------1991
CSP78:2:Tyes---1685-32603261121102731669
CSUL444179:0:Tyes---0-------
CTEP194439:0:Tyes0----124-2033273544-
CTET212717:0:Tyes1740-----0-175117541265
CTRA471472:0:Tyes-----0-----
CTRA471473:0:Tno-----0-----
CVES412965:0:Tyes164282-3460---283565282
CVIO243365:0:Tyes12264726482649011103989396639652647
DARO159087:0:Tyes581831811804405960012183
DDES207559:0:Tyes1130--2233-125718030480481-
DETH243164:0:Tyes0----------
DGEO319795:1:Tyes---651--5510---
DHAF138119:0:Tyes8600---8582720-8718750
DNOD246195:0:Tyes-633-6310217669692694695633
DOLE96561:0:Tyes0----1-2614513512-
DPSY177439:2:Tyes2361--0-239119761748812811-
DRAD243230:3:Tyes---145--0----
DRED349161:0:Tyes1911488-0-19082694-19361940488
DSHI398580:5:Tyes-854-2333-01-514515854
DSP216389:0:Tyes0----------
DSP255470:0:Tno0----------
DVUL882:1:Tyes1550--506-12168520385386-
ECAN269484:0:Tyes-219-0------219
ECAR218491:0:Tyes82109763452
ECHA205920:0:Tyes-661-0------661
ECOL199310:0:Tno1017751011874562
ECOL316407:0:Tno913901010763452
ECOL331111:6:Tno1015811011874562
ECOL362663:0:Tno913921010763452
ECOL364106:1:Tno1021011763452
ECOL405955:2:Tyes913951010-63452
ECOL409438:6:Tyes1116161012874562
ECOL413997:0:Tno913161010763452
ECOL439855:4:Tno93851010763452
ECOL469008:0:Tno13450135313541344134713481351135013491352
ECOL481805:0:Tno13780138613871377138013811384138313821385
ECOL585034:0:Tno914551010763452
ECOL585035:0:Tno913811010763452
ECOL585055:0:Tno916331010763452
ECOL585056:2:Tno916421010763452
ECOL585057:0:Tno94241010763452
ECOL585397:0:Tno916801010763452
ECOL83334:0:Tno921961010763452
ECOLI:0:Tno914161010763452
ECOO157:0:Tno922161010763452
EFAE226185:3:Tyes368-----517--0-
EFER585054:1:Tyes17890236547
ELIT314225:0:Tyes-1181-0-260026011513109210931181
ERUM254945:0:Tyes---0-------
ERUM302409:0:Tno---0-------
ESP42895:1:Tyes81429109763452
FALN326424:0:Tyes17--3181-18--10-
FJOH376686:0:Tyes551--1745--33260-1268-
FMAG334413:1:Tyes8-----1156-3890-
FNOD381764:0:Tyes-----0--675558-
FNUC190304:0:Tyes669-----0-564748-
FPHI484022:1:Tyes-10961095109401059441---1096
FRANT:0:Tno-777-7790841----777
FSP106370:0:Tyes18--924-19--10-
FSP1855:0:Tyes3406--0-3405---3425-
FSUC59374:0:Tyes-------5410-
FTUL351581:0:Tno-2-074735587---2
FTUL393011:0:Tno-2-064828511---2
FTUL393115:0:Tyes-768-7700832----768
FTUL401614:0:Tyes-727-72905961358---727
FTUL418136:0:Tno-0-2771380----0
FTUL458234:0:Tno-2-066426524---2
GBET391165:0:Tyes-485-0-11231124484879880485
GFOR411154:0:Tyes2330--1824-15920--1860-
GKAU235909:1:Tyes14231212---14212386-0-1212
GMET269799:1:Tyes2272--1821137922732274245310-
GOXY290633:5:Tyes-0-27-11251126416170817070
GSUL243231:0:Tyes2741--1970174327402739016141615-
GTHE420246:1:Tyes14461234---1444--501234
GURA351605:0:Tyes3417--583242634163415021622163-
GVIO251221:0:Tyes2907--3305--19303472310-
HACI382638:1:Tyes0------12993771293-
HARS204773:0:Tyes35126652667266823433503492102665
HAUR316274:2:Tyes1871--0-1860--36104357-
HCHE349521:0:Tyes473466-4640472471467469470466
HDUC233412:0:Tyes-7567557530761760757758759756
HHAL349124:0:Tyes11374671139113611353104
HHEP235279:0:Tyes-------5560564-
HINF281310:0:Tyes-210976763452
HINF374930:0:Tyes-567745014325
HINF71421:0:Tno-210875763452
HMOD498761:0:Tyes22460---2243510-226822720
HNEP81032:0:Tyes-1491-751-011492258625871491
HPY:0:Tno-------8400834-
HPYL357544:1:Tyes-------8160810-
HPYL85963:0:Tno574------7930787-
HSOM205914:1:Tyes-2101236763452
HSOM228400:0:Tno--1028665234-
ILOI283942:0:Tyes189100237548
JSP290400:1:Tyes-906-879-0--33093308906
JSP375286:0:Tyes35230943096309727433513502103094
KPNE272620:2:Tyes4096811408840874097409440934090409104089
KRAD266940:2:Fyes0--170-------
LACI272621:0:Tyes1413----14110----
LBIF355278:2:Tyes0--494---1377-1216-
LBIF456481:2:Tno0--509---1436-1270-
LBOR355276:1:Tyes0--594---2146-1205-
LBOR355277:1:Tno2156--1047---0-1503-
LBRE387344:2:Tyes956----9540----
LCAS321967:1:Tyes2----01074----
LCHO395495:0:Tyes157038653867081156915688491001013865
LDEL321956:0:Tyes1107----11050----
LDEL390333:0:Tyes1027----10250----
LGAS324831:0:Tyes1283----12810----
LHEL405566:0:Tyes1209----12070----
LINN272626:1:Tno1199----11970--139-
LINT189518:1:Tyes803--1685---0-2718-
LINT267671:1:Tno2668--1979---0-1194-
LINT363253:3:Tyes-----617--10-
LJOH257314:0:Tyes1377----13750----
LLAC272622:5:Tyes908----02073----
LLAC272623:0:Tyes871----01906----
LMES203120:1:Tyes2----0193----
LMON169963:0:Tno1196----11940--146-
LMON265669:0:Tyes1182----11800----
LPLA220668:0:Tyes1275----12770----
LPNE272624:0:Tno0164-166132311632930164
LPNE297245:1:Fno0217-214130292182728217
LPNE297246:1:Fyes0167-170-33321662930167
LPNE400673:0:Tno0165-168-31301642829165
LREU557436:0:Tyes1251----12490----
LSAK314315:0:Tyes1347----13450----
LSPH444177:1:Tyes2----0911----
LWEL386043:0:Tyes1231----12290----
LXYL281090:0:Tyes0--168-2-----
MABS561007:1:Tyes0--322-1-----
MAER449447:0:Tyes---0---2472650362-
MAQU351348:2:Tyes8210338763452
MAVI243243:0:Tyes0--515-1-----
MBOV233413:0:Tno208--0-207-----
MBOV410289:0:Tno208--0-207-----
MCAP243233:0:Tyes1676246126818192662722102
MCAP340047:0:Tyes------0----
MEXT419610:0:Tyes27502797-4082-275121680--2797
MFLA265072:0:Tyes15641900190219031562101899189818971900
MFLO265311:0:Tyes0----------
MGIL350054:3:Tyes0--284-1-----
MHUN323259:0:Tyes------0----
MHYO295358:0:Tno0----------
MLAB410358:0:Tyes------0----
MLEP272631:0:Tyes394--0-------
MLOT266835:2:Tyes-0-733-278927881--0
MMAG342108:0:Tyes-1730-0--33631731279627951730
MMAR267377:0:Tyes------0----
MMAR394221:0:Tyes-0-290-1328132915585590
MMAR402880:1:Tyes------0----
MMAR426368:0:Tyes------0----
MMAR444158:0:Tyes------0----
MMOB267748:0:Tyes0----------
MMYC272632:0:Tyes------0----
MPEN272633:0:Tyes2-----0----
MPET420662:1:Tyes1261232-23613712621263344201232
MPUL272635:0:Tyes0----------
MSME246196:0:Tyes293--0-292-----
MSP164756:1:Tno219--0-------
MSP164757:0:Tno212--0-------
MSP189918:2:Tyes230--0-------
MSP266779:3:Tyes-547-0-24242423546--547
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