CANDIDATE ID: 102

CANDIDATE ID: 102

NUMBER OF GENES: 11
AVERAGE SCORE:    9.9924367e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6363 (ybeZ) (b0660)
   Products of gene:
     - G6363-MONOMER (predicted protein with nucleoside triphosphate hydrolase domain)

- G6362 (ybeY) (b0659)
   Products of gene:
     - G6362-MONOMER (conserved protein involved in translation)

- G6361 (ybeX) (b0658)
   Products of gene:
     - G6361-MONOMER (predicted ion transport protein)

- G6350 (nadD) (b0639)
   Products of gene:
     - NICONUCADENYLYLTRAN-MONOMER (nicotinate-mononucleotide adenylyltransferase)
       Reactions:
        ATP + nicotinate mononucleotide  ->  diphosphate + nicotinate adenine dinucleotide
         In pathways
         PWY-3502 (PWY-3502)
         PWY0-781 (aspartate superpathway)
         NADSYN-PWY (NADSYN-PWY)
         PYRIDNUCSAL-PWY (NAD salvage pathway I)
         PYRIDNUCSYN-PWY (NAD biosynthesis I (from aspartate))
         PWY-5381 (PWY-5381)
         PWY-5653 (PWY-5653)

- EG12851 (ybeL) (b0643)
   Products of gene:
     - EG12851-MONOMER (conserved protein)

- EG11412 (holA) (b0640)
   Products of gene:
     - EG11412-MONOMER (DNA polymerase III, δ subunit)
     - CPLX0-3801 (DNA polymerase III, preinitiation complex)
     - CPLX0-3803 (DNA polymerase III, holoenzyme)

- EG11255 (ybeB) (b0637)
   Products of gene:
     - EG11255-MONOMER (predicted protein)

- EG10855 (lptE) (b0641)
   Products of gene:
     - EG10855-MONOMER (rare lipoprotein LptE)
     - CPLX0-7628 (outer membrane LPS assembly complex)

- EG10607 (mrdB) (b0634)
   Products of gene:
     - EG10607-MONOMER (rod shape-determining membrane protein; sensitivity to radiation and drugs)

- EG10532 (leuS) (b0642)
   Products of gene:
     - LEUS-MONOMER (leucyl-tRNA synthetase)
       Reactions:
        tRNAleu + L-leucine + ATP  ->  L-leucyl-tRNAleu + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)

- EG10168 (lnt) (b0657)
   Products of gene:
     - EG10168-MONOMER (apolipoprotein N-acyltransferase)



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 150
Effective number of orgs (counting one per cluster within 468 clusters): 93

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175811
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295311
YPES386656 ncbi Yersinia pestis Pestoides F11
YPES377628 ncbi Yersinia pestis Nepal51611
YPES360102 ncbi Yersinia pestis Antiqua11
YPES349746 ncbi Yersinia pestis Angola11
YPES214092 ncbi Yersinia pestis CO9211
YPES187410 ncbi Yersinia pestis KIM 1011
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808111
VVUL216895 ncbi Vibrio vulnificus CMCP610
VVUL196600 ncbi Vibrio vulnificus YJ01610
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 221063310
VFIS312309 ncbi Vibrio fischeri ES11410
VCHO345073 ncbi Vibrio cholerae O39510
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696110
TTUR377629 ncbi Teredinibacter turnerae T79019
TDEN292415 ncbi Thiobacillus denitrificans ATCC 2525910
TCRU317025 ncbi Thiomicrospira crunogena XCL-29
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT211
SSP94122 ncbi Shewanella sp. ANA-311
SSON300269 ncbi Shigella sonnei Ss04611
SSED425104 ncbi Shewanella sediminis HAW-EB311
SPRO399741 ncbi Serratia proteamaculans 56811
SPEA398579 ncbi Shewanella pealeana ATCC 70034511
SONE211586 ncbi Shewanella oneidensis MR-111
SLOI323850 ncbi Shewanella loihica PV-411
SHIGELLA ncbi Shigella flexneri 2a str. 2457T11
SHAL458817 ncbi Shewanella halifaxensis HAW-EB411
SGLO343509 ncbi Sodalis glossinidius morsitans11
SFLE373384 ncbi Shigella flexneri 5 str. 840111
SFLE198214 ncbi Shigella flexneri 2a str. 30111
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47611
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6711
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915011
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1811
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty211
SDYS300267 ncbi Shigella dysenteriae Sd19711
SDEN318161 ncbi Shewanella denitrificans OS21711
SDEG203122 ncbi Saccharophagus degradans 2-4011
SBOY300268 ncbi Shigella boydii Sb22711
SBAL402882 ncbi Shewanella baltica OS18511
SBAL399599 ncbi Shewanella baltica OS19511
RSOL267608 ncbi Ralstonia solanacearum GMI10009
RMET266264 ncbi Ralstonia metallidurans CH349
RFER338969 ncbi Rhodoferax ferrireducens T1189
REUT381666 ncbi Ralstonia eutropha H169
REUT264198 ncbi Ralstonia eutropha JMP1349
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30009
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a9
PSTU379731 ncbi Pseudomonas stutzeri A15019
PSP296591 ncbi Polaromonas sp. JS6669
PPUT76869 ncbi Pseudomonas putida GB-19
PPUT351746 ncbi Pseudomonas putida F19
PPUT160488 ncbi Pseudomonas putida KT24409
PPRO298386 ncbi Photobacterium profundum SS910
PMUL272843 ncbi Pasteurella multocida multocida Pm709
PMEN399739 ncbi Pseudomonas mendocina ymp9
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO110
PING357804 ncbi Psychromonas ingrahamii 3710
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC12511
PFLU220664 ncbi Pseudomonas fluorescens Pf-59
PFLU216595 ncbi Pseudomonas fluorescens SBW259
PFLU205922 ncbi Pseudomonas fluorescens Pf0-19
PENT384676 ncbi Pseudomonas entomophila L489
PATL342610 ncbi Pseudoalteromonas atlantica T6c10
PAER208964 ncbi Pseudomonas aeruginosa PAO19
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA149
NOCE323261 ncbi Nitrosococcus oceani ATCC 197079
NMUL323848 ncbi Nitrosospira multiformis ATCC 2519610
NMEN374833 ncbi Neisseria meningitidis 0534429
NMEN272831 ncbi Neisseria meningitidis FAM189
NMEN122587 ncbi Neisseria meningitidis Z24919
NMEN122586 ncbi Neisseria meningitidis MC589
NGON242231 ncbi Neisseria gonorrhoeae FA 10909
NEUT335283 ncbi Nitrosomonas eutropha C919
NEUR228410 ncbi Nitrosomonas europaea ATCC 197189
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E9
MSP400668 ncbi Marinomonas sp. MWYL110
MFLA265072 ncbi Methylobacillus flagellatus KT9
MCAP243233 ncbi Methylococcus capsulatus Bath10
MAQU351348 ncbi Marinobacter aquaeolei VT811
LPNE400673 ncbi Legionella pneumophila Corby9
LPNE297246 ncbi Legionella pneumophila Paris9
LPNE297245 ncbi Legionella pneumophila Lens10
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 110
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857811
JSP375286 ncbi Janthinobacterium sp. Marseille9
ILOI283942 ncbi Idiomarina loihiensis L2TR10
HSOM228400 ncbi Haemophilus somnus 23369
HSOM205914 ncbi Haemophilus somnus 129PT9
HHAL349124 ncbi Halorhodospira halophila SL110
HCHE349521 ncbi Hahella chejuensis KCTC 239610
HARS204773 ncbi Herminiimonas arsenicoxydans9
ESP42895 Enterobacter sp.11
EFER585054 ncbi Escherichia fergusonii ATCC 3546911
ECOO157 ncbi Escherichia coli O157:H7 EDL93311
ECOL83334 Escherichia coli O157:H711
ECOL585397 ncbi Escherichia coli ED1a11
ECOL585057 ncbi Escherichia coli IAI3911
ECOL585056 ncbi Escherichia coli UMN02611
ECOL585055 ncbi Escherichia coli 5598911
ECOL585035 ncbi Escherichia coli S8811
ECOL585034 ncbi Escherichia coli IAI111
ECOL481805 ncbi Escherichia coli ATCC 873911
ECOL469008 ncbi Escherichia coli BL21(DE3)11
ECOL439855 ncbi Escherichia coli SMS-3-511
ECOL413997 ncbi Escherichia coli B str. REL60611
ECOL409438 ncbi Escherichia coli SE1111
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8911
ECOL362663 ncbi Escherichia coli 53611
ECOL331111 ncbi Escherichia coli E24377A11
ECOL316407 ncbi Escherichia coli K-12 substr. W311011
ECOL199310 ncbi Escherichia coli CFT07311
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104311
DARO159087 ncbi Dechloromonas aromatica RCB9
CVIO243365 ncbi Chromobacterium violaceum ATCC 124729
CSAL290398 ncbi Chromohalobacter salexigens DSM 30439
CPSY167879 ncbi Colwellia psychrerythraea 34H11
CJAP155077 Cellvibrio japonicus10
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1119
CBUR360115 ncbi Coxiella burnetii RSA 3319
CBUR227377 ncbi Coxiella burnetii RSA 4939
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN9
CBLO203907 ncbi Candidatus Blochmannia floridanus9
BVIE269482 ncbi Burkholderia vietnamiensis G49
BTHA271848 ncbi Burkholderia thailandensis E2649
BSP36773 Burkholderia sp.9
BPSE320372 ncbi Burkholderia pseudomallei 1710b9
BPSE272560 ncbi Burkholderia pseudomallei K962439
BPET94624 Bordetella petrii9
BPAR257311 ncbi Bordetella parapertussis 128229
BMAL320389 ncbi Burkholderia mallei NCTC 102479
BMAL320388 ncbi Burkholderia mallei SAVP19
BMAL243160 ncbi Burkholderia mallei ATCC 233449
BCEN331272 ncbi Burkholderia cenocepacia HI24249
BCEN331271 ncbi Burkholderia cenocepacia AU 10549
BBRO257310 ncbi Bordetella bronchiseptica RB509
BAMB398577 ncbi Burkholderia ambifaria MC40-69
BAMB339670 ncbi Burkholderia ambifaria AMMD9
ASP76114 ncbi Aromatoleum aromaticum EbN19
ASP62928 ncbi Azoarcus sp. BH729
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44911
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL039
APLE416269 ncbi Actinobacillus pleuropneumoniae L209
AHYD196024 Aeromonas hydrophila dhakensis11
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 2327010
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-110
ABOR393595 ncbi Alcanivorax borkumensis SK29
ABAU360910 ncbi Bordetella avium 197N9


Names of the homologs of the genes in the group in each of these orgs
  G6363   G6362   G6361   G6350   EG12851   EG11412   EG11255   EG10855   EG10607   EG10532   EG10168   
YPSE349747 YPSIP31758_2916YPSIP31758_2917YPSIP31758_2918YPSIP31758_2929YPSIP31758_2924YPSIP31758_2928YPSIP31758_2947YPSIP31758_2927YPSIP31758_2950YPSIP31758_2926YPSIP31758_2919
YPSE273123 YPTB1112YPTB1111YPTB1110YPTB1100YPTB1104YPTB1101YPTB1099YPTB1102YPTB1096YPTB1103YPTB1109
YPES386656 YPDSF_2633YPDSF_2634YPDSF_2636YPDSF_2646YPDSF_2642YPDSF_2645YPDSF_2647YPDSF_2644YPDSF_2650YPDSF_2643YPDSF_2637
YPES377628 YPN_1105YPN_1104YPN_1102YPN_1092YPN_1096YPN_1093YPN_1091YPN_1094YPN_1088YPN_1095YPN_1101
YPES360102 YPA_2478YPA_2479YPA_2480YPA_2490YPA_2486YPA_2489YPA_2491YPA_2488YPA_2494YPA_2487YPA_2481
YPES349746 YPANGOLA_A1830YPANGOLA_A1832YPANGOLA_A1833YPANGOLA_A1845YPANGOLA_A1840YPANGOLA_A1844YPANGOLA_A1846YPANGOLA_A1843YPANGOLA_A1850YPANGOLA_A1842YPANGOLA_A1834
YPES214092 YPO2619YPO2618YPO2617YPO2607YPO2611YPO2608YPO2606YPO2609YPO2603YPO2610YPO2616
YPES187410 Y1194Y1193Y1191Y1181Y1185Y1182Y1180Y1183Y1177Y1184Y1190
YENT393305 YE2986YE2987YE2988YE2999YE2995YE2998YE3000YE2997YE3003YE2996YE2989
VVUL216895 VV1_0267VV1_0268VV1_0269VV1_0271VV1_0275VV1_0276VV1_0274VV1_0279VV1_0272VV1_0270
VVUL196600 VV0916VV0915VV0914VV0912VV0909VV0908VV0910VV0905VV0911VV0913
VPAR223926 VP0732VP0731VP0730VP0728VP0725VP0724VP0726VP0721VP0727VP0729
VFIS312309 VF0758VF0757VF0756VF0754VF0751VF0750VF0752VF0747VF0753VF0755
VCHO345073 VC0395_A0483VC0395_A0482VC0395_A0481VC0395_A0479VC0395_A0476VC0395_A0475VC0395_A0477VC0395_A0472VC0395_A0478VC0395_A0480
VCHO VC0961VC0960VC0959VC0957VC0953VC0952VC0954VC0949VC0956VC0958
TTUR377629 TERTU_3875TERTU_3876TERTU_3877TERTU_3887TERTU_0601TERTU_3886TERTU_0604TERTU_3885TERTU_3878
TDEN292415 TBD_2705TBD_2704TBD_2703TBD_2441TBD_2443TBD_2440TBD_2444TBD_0264TBD_2445TBD_2584
TCRU317025 TCR_0474TCR_0475TCR_0476TCR_0484TCR_0481TCR_0485TCR_1634TCR_0479TCR_0477
STYP99287 STM0669STM0668STM0667STM0645STM0653STM0646STM0642STM0647STM0639STM0648STM0666
SSP94122 SHEWANA3_1007SHEWANA3_1006SHEWANA3_1005SHEWANA3_0998SHEWANA3_1002SHEWANA3_0999SHEWANA3_0997SHEWANA3_1000SHEWANA3_0994SHEWANA3_1001SHEWANA3_1004
SSON300269 SSO_0614SSO_0613SSO_0612SSO_0593SSO_0597SSO_0594SSO_0591SSO_0595SSO_0588SSO_0596SSO_0611
SSED425104 SSED_3472SSED_3473SSED_3474SSED_3482SSED_3478SSED_3481SSED_3483SSED_3480SSED_3486SSED_3479SSED_3475
SPRO399741 SPRO_1218SPRO_1217SPRO_1216SPRO_1204SPRO_1208SPRO_1205SPRO_1203SPRO_1206SPRO_1200SPRO_1207SPRO_1215
SPEA398579 SPEA_3138SPEA_3139SPEA_3140SPEA_3146SPEA_3142SPEA_3145SPEA_3147SPEA_3144SPEA_3150SPEA_3143SPEA_3141
SONE211586 SO_1180SO_1179SO_1178SO_1171SO_1175SO_1172SO_1170SO_1173SO_1167SO_1174SO_1177
SLOI323850 SHEW_2924SHEW_2925SHEW_2926SHEW_2932SHEW_2928SHEW_2931SHEW_2933SHEW_2930SHEW_2936SHEW_2929SHEW_2927
SHIGELLA YBEZYBEYYBEXYBENYBELHOLAYBEBRLPBMRDBLEUSLNT
SHAL458817 SHAL_3223SHAL_3224SHAL_3225SHAL_3231SHAL_3227SHAL_3230SHAL_3232SHAL_3229SHAL_3235SHAL_3228SHAL_3226
SGLO343509 SG0810SG0809SG0808SG0800SG0804SG0801SG0799SG0802SG0796SG0803SG0807
SFLE373384 SFV_0667SFV_0668SFV_0669SFV_0687SFV_0683SFV_0686SFV_0689SFV_0685SFV_0692SFV_0684SFV_0670
SFLE198214 AAN42259.1AAN42260.1AAN42261.1AAN42278.1AAN42274.1AAN42277.1AAN42280.1AAN42276.1AAN42283.1AAN42275.1AAN42262.1
SENT454169 SEHA_C0787SEHA_C0786SEHA_C0785SEHA_C0761SEHA_C0770SEHA_C0762SEHA_C0758SEHA_C0763SEHA_C0755SEHA_C0764SEHA_C0784
SENT321314 SCH_0697SCH_0696SCH_0695SCH_0675SCH_0682SCH_0676SCH_0672SCH_0677SCH_0669SCH_0678SCH_0694
SENT295319 SPA2071SPA2072SPA2073SPA2089SPA2081SPA2088SPA2092SPA2087SPA2095SPA2086SPA2074
SENT220341 STY0715STY0714STY0712STY0696STY0704STY0697STY0693STY0698STY0690STY0699STY0711
SENT209261 T2204T2205T2206T2222T2214T2221T2225T2220T2228T2219T2207
SDYS300267 SDY_0596SDY_0595SDY_0594SDY_0561SDY_0567SDY_0562SDY_0559SDY_0563SDY_0556SDY_0564SDY_0593
SDEN318161 SDEN_0814SDEN_0813SDEN_0812SDEN_0794SDEN_0798SDEN_0795SDEN_0857SDEN_0796SDEN_0854SDEN_0797SDEN_0811
SDEG203122 SDE_3301SDE_3302SDE_3303SDE_3344SDE_0534SDE_3310SDE_3343SDE_3309SDE_3340SDE_3308SDE_3304
SBOY300268 SBO_0524SBO_0523SBO_0522SBO_0503SBO_0507SBO_0504SBO_0501SBO_0505SBO_0498SBO_0506SBO_0521
SBAL402882 SHEW185_3304SHEW185_3305SHEW185_3306SHEW185_3314SHEW185_3310SHEW185_3313SHEW185_3315SHEW185_3312SHEW185_3318SHEW185_3311SHEW185_3307
SBAL399599 SBAL195_3440SBAL195_3441SBAL195_3442SBAL195_3450SBAL195_3446SBAL195_3449SBAL195_3451SBAL195_3448SBAL195_3454SBAL195_3447SBAL195_3443
RSOL267608 RSC0530RSC0529RSC0528RSC2193RSC2742RSC2194RSC0063RSC2744RSC0527
RMET266264 RMET_0452RMET_0451RMET_0450RMET_0782RMET_2971RMET_0781RMET_0055RMET_2973RMET_0449
RFER338969 RFER_0738RFER_0737RFER_3698RFER_2078RFER_0760RFER_2079RFER_3371RFER_0758RFER_3697
REUT381666 H16_A0527H16_A0526H16_A0525H16_A0913H16_A3137H16_A0912H16_A0117H16_A3139H16_A0524
REUT264198 REUT_A0513REUT_A0512REUT_A0511REUT_A2525REUT_A2832REUT_A2526REUT_A0080REUT_A2834REUT_A0510
PSYR223283 PSPTO_4805PSPTO_4806PSPTO_4807PSPTO_4828PSPTO_4814PSPTO_4827PSPTO_4824PSPTO_4812PSPTO_4808
PSYR205918 PSYR_4346PSYR_4347PSYR_4348PSYR_4368PSYR_4354PSYR_4367PSYR_4364PSYR_4352PSYR_4349
PSTU379731 PST_3762PST_3763PST_3764PST_3784PST_3770PST_3783PST_3780PST_3768PST_3765
PSP296591 BPRO_4095BPRO_4096BPRO_4209BPRO_1971BPRO_4600BPRO_1972BPRO_1091BPRO_4605BPRO_4208
PPUT76869 PPUTGB1_4841PPUTGB1_4842PPUTGB1_4843PPUTGB1_4863PPUTGB1_4849PPUTGB1_4862PPUTGB1_4859PPUTGB1_4847PPUTGB1_4844
PPUT351746 PPUT_4663PPUT_4664PPUT_4665PPUT_4685PPUT_4671PPUT_4684PPUT_4681PPUT_4669PPUT_4666
PPUT160488 PP_4787PP_4788PP_4789PP_4810PP_4796PP_4809PP_4806PP_4794PP_4790
PPRO298386 PBPRA2879PBPRA2880PBPRA2881PBPRA2884PBPRA2887PBPRA2888PBPRA2886PBPRA2891PBPRA2885PBPRA2882
PMUL272843 PM1046PM1045PM1033PM1216PM1922PM1215PM1925PM1214PM1032
PMEN399739 PMEN_3780PMEN_3781PMEN_3782PMEN_3801PMEN_3788PMEN_3800PMEN_3797PMEN_3786PMEN_3783
PLUM243265 PLU1311PLU1310PLU1309PLU1300PLU1301PLU1299PLU1302PLU1296PLU1303PLU1308
PING357804 PING_0534PING_0533PING_0532PING_1188PING_1189PING_1137PING_1190PING_1134PING_1191PING_0531
PHAL326442 PSHAA1045PSHAA1044PSHAA1043PSHAA1028PSHAA1032PSHAA1029PSHAA1027PSHAA1030PSHAA1024PSHAA1031PSHAA1042
PFLU220664 PFL_5433PFL_5434PFL_5435PFL_5455PFL_5441PFL_5454PFL_5451PFL_5439PFL_5436
PFLU216595 PFLU5405PFLU5406PFLU5407PFLU5426PFLU5412PFLU5425PFLU5422PFLU5410PFLU5408
PFLU205922 PFL_4951PFL_4952PFL_4953PFL_4973PFL_4959PFL_4972PFL_4969PFL_4957PFL_4954
PENT384676 PSEEN4807PSEEN4808PSEEN4809PSEEN4829PSEEN4815PSEEN4828PSEEN4825PSEEN4813PSEEN4810
PATL342610 PATL_2207PATL_2208PATL_2209PATL_1563PATL_1564PATL_1562PATL_1565PATL_1559PATL_1566PATL_2210
PAER208964 PA3981PA3982PA3983PA4006PA3989PA4005PA4002PA3987PA3984
PAER208963 PA14_12330PA14_12310PA14_12300PA14_12020PA14_12200PA14_12030PA14_12070PA14_12230PA14_12280
NOCE323261 NOC_0238NOC_0239NOC_0240NOC_2661NOC_2600NOC_2663NOC_2660NOC_2665NOC_0241
NMUL323848 NMUL_A2696NMUL_A2697NMUL_A2698NMUL_A0360NMUL_A0513NMUL_A0361NMUL_A0512NMUL_A0316NMUL_A0511NMUL_A0552
NMEN374833 NMCC_0804NMCC_0479NMCC_0477NMCC_0175NMCC_0667NMCC_0176NMCC_0666NMCC_0323NMCC_0672
NMEN272831 NMC0784NMC0477NMC0476NMC2003NMC0658NMC2002NMC0657NMC0326NMC0664
NMEN122587 NMA1056NMA0717NMA0716NMA0416NMA0913NMA0417NMA0912NMA0559NMA0918
NMEN122586 NMB_0845NMB_0538NMB_0537NMB_2024NMB_0708NMB_2023NMB_0707NMB_1897NMB_0713
NGON242231 NGO0417NGO0145NGO0144NGO2080NGO0283NGO2081NGO0282NGO0006NGO0289
NEUT335283 NEUT_1788NEUT_1787NEUT_1786NEUT_1610NEUT_1427NEUT_1611NEUT_1588NEUT_1429NEUT_1870
NEUR228410 NE2334NE2333NE2332NE0359NE1137NE0358NE2066NE1139NE1188
MSUC221988 MS1682MS1680MS0651MS0332MS1834MS0337MS1831MS0338MS0652
MSP400668 MMWYL1_2910MMWYL1_2911MMWYL1_2912MMWYL1_2851MMWYL1_2917MMWYL1_2850MMWYL1_2916MMWYL1_2847MMWYL1_2915MMWYL1_2913
MFLA265072 MFLA_0650MFLA_0649MFLA_0648MFLA_2159MFLA_2157MFLA_0593MFLA_2495MFLA_2155MFLA_0646
MCAP243233 MCA_1458MCA_1457MCA_1456MCA_1879MCA_1451MCA_2027MCA_1452MCA_0104MCA_1453MCA_1455
MAQU351348 MAQU_2739MAQU_2740MAQU_2741MAQU_2416MAQU_2743MAQU_2746MAQU_2415MAQU_2745MAQU_2412MAQU_2744MAQU_2742
LPNE400673 LPC_0857LPC_0856LPC_0855LPC_0761LPC_0793LPC_0763LPC_0790LPC_0764LPC_0765
LPNE297246 LPP1396LPP1395LPP1394LPP1299LPP1332LPP1301LPP1328LPP1302LPP1303
LPNE297245 LPL1600LPL1601LPL1602LPL1298LPL1299LPL1328LPL1300LPL1325LPL1301LPL1302
LPNE272624 LPG1441LPG1440LPG1439LPG1345LPG1346LPG1377LPG1347LPG1374LPG1348LPG1349
KPNE272620 GKPORF_B5109GKPORF_B5108GKPORF_B5107GKPORF_B5095GKPORF_B5099GKPORF_B5096GKPORF_B5093GKPORF_B5097GKPORF_B5090GKPORF_B5098GKPORF_B5106
JSP375286 MMA_0430MMA_0429MMA_0428MMA_0541MMA_2898MMA_0540MMA_0200MMA_2896MMA_0427
ILOI283942 IL0942IL0943IL0944IL0950IL0949IL0951IL0948IL0954IL0947IL0945
HSOM228400 HSM_0614HSM_0615HSM_0111HSM_0469HSM_0195HSM_0468HSM_0192HSM_0467HSM_0112
HSOM205914 HS_0345HS_0346HS_0237HS_1555HS_0323HS_1556HS_0320HS_1557HS_0238
HHAL349124 HHAL_0892HHAL_0891HHAL_0890HHAL_2141HHAL_2146HHAL_2143HHAL_2140HHAL_1009HHAL_2145HHAL_0889
HCHE349521 HCH_05349HCH_05350HCH_05351HCH_05846HCH_05353HCH_05357HCH_05845HCH_05842HCH_05355HCH_05352
HARS204773 HEAR0380HEAR0379HEAR0378HEAR0555HEAR2663HEAR0554HEAR0172HEAR2661HEAR0377
ESP42895 ENT638_1186ENT638_1185ENT638_1184ENT638_1173ENT638_1177ENT638_1174ENT638_1172ENT638_1175ENT638_1169ENT638_1176ENT638_1183
EFER585054 EFER_2442EFER_2443EFER_2444EFER_2467EFER_2463EFER_2466EFER_2468EFER_2465EFER_2471EFER_2464EFER_2445
ECOO157 YBEZYBEYYBEXYBENYBELHOLAYBEBRLPBMRDBLEUSLNT
ECOL83334 ECS0698ECS0697ECS0696ECS0677ECS0681ECS0678ECS0675ECS0679ECS0672ECS0680ECS0695
ECOL585397 ECED1_0651ECED1_0650ECED1_0649ECED1_0636ECED1_0640ECED1_0637ECED1_0634ECED1_0638ECED1_0631ECED1_0639ECED1_0648
ECOL585057 ECIAI39_0627ECIAI39_0626ECIAI39_0625ECIAI39_0614ECIAI39_0618ECIAI39_0615ECIAI39_0612ECIAI39_0616ECIAI39_0609ECIAI39_0617ECIAI39_0624
ECOL585056 ECUMN_0753ECUMN_0752ECUMN_0751ECUMN_0733ECUMN_0737ECUMN_0734ECUMN_0731ECUMN_0735ECUMN_0728ECUMN_0736ECUMN_0750
ECOL585055 EC55989_0655EC55989_0654EC55989_0653EC55989_0631EC55989_0635EC55989_0632EC55989_0629EC55989_0633EC55989_0626EC55989_0634EC55989_0652
ECOL585035 ECS88_0695ECS88_0694ECS88_0693ECS88_0681ECS88_0685ECS88_0682ECS88_0679ECS88_0683ECS88_0676ECS88_0684ECS88_0692
ECOL585034 ECIAI1_0644ECIAI1_0643ECIAI1_0642ECIAI1_0623ECIAI1_0627ECIAI1_0624ECIAI1_0621ECIAI1_0625ECIAI1_0618ECIAI1_0626ECIAI1_0641
ECOL481805 ECOLC_2985ECOLC_2986ECOLC_2987ECOLC_3006ECOLC_3002ECOLC_3005ECOLC_3008ECOLC_3004ECOLC_3011ECOLC_3003ECOLC_2988
ECOL469008 ECBD_2991ECBD_2992ECBD_2993ECBD_3012ECBD_3008ECBD_3011ECBD_3014ECBD_3010ECBD_3017ECBD_3009ECBD_2994
ECOL439855 ECSMS35_0682ECSMS35_0681ECSMS35_0680ECSMS35_0659ECSMS35_0663ECSMS35_0660ECSMS35_0657ECSMS35_0661ECSMS35_0654ECSMS35_0662ECSMS35_0678
ECOL413997 ECB_00628ECB_00627ECB_00626ECB_00608ECB_00612ECB_00609ECB_00606ECB_00610ECB_00603ECB_00611ECB_00625
ECOL409438 ECSE_0731ECSE_0730ECSE_0729ECSE_0708ECSE_0712ECSE_0709ECSE_0705ECSE_0710ECSE_0702ECSE_0711ECSE_0728
ECOL405955 APECO1_1403APECO1_1404APECO1_1405APECO1_1416APECO1_1413APECO1_1415APECO1_1414APECO1_1421APECO1_14132APECO1_1406
ECOL364106 UTI89_C0658UTI89_C0657UTI89_C0656UTI89_C0642UTI89_C0646UTI89_C0643UTI89_C0639UTI89_C0644UTI89_C0636UTI89_C0645UTI89_C0655
ECOL362663 ECP_0683ECP_0682ECP_0681ECP_0669ECP_0673ECP_0670ECP_0667ECP_0671ECP_0664ECP_0672ECP_0680
ECOL331111 ECE24377A_0689ECE24377A_0688ECE24377A_0687ECE24377A_0665ECE24377A_0669ECE24377A_0666ECE24377A_0663ECE24377A_0667ECE24377A_0660ECE24377A_0668ECE24377A_0686
ECOL316407 ECK0652:JW0657:B0660ECK0651:JW0656:B0659ECK0650:JW0655:B0658ECK0632:JW0634:B0639ECK0636:JW0638:B0643ECK0633:JW0635:B0640ECK0630:JW5090:B0637ECK0634:JW0636:B0641ECK0627:JW0629:B0634ECK0635:JW0637:B0642ECK0649:JW0654:B0657
ECOL199310 C0745C0744C0743C0730C0734C0731C0728C0732C0725C0733C0742
ECAR218491 ECA1318ECA1317ECA1316ECA1306ECA1310ECA1307ECA1305ECA1308ECA1302ECA1309ECA1315
DARO159087 DARO_3528DARO_3529DARO_3530DARO_0169DARO_0542DARO_0170DARO_0112DARO_0544DARO_3531
CVIO243365 CV_4151CV_4152CV_4153CV_0519CV_0507CV_0518CV_4361CV_0505CV_4154
CSAL290398 CSAL_2335CSAL_2336CSAL_2337CSAL_1542CSAL_2346CSAL_1543CSAL_1546CSAL_2344CSAL_2338
CPSY167879 CPS_3573CPS_3574CPS_3575CPS_1718CPS_1723CPS_1720CPS_1717CPS_1721CPS_1714CPS_1722CPS_3576
CJAP155077 CJA_1638CJA_1637CJA_1636CJA_0786CJA_0452CJA_0787CJA_0453CJA_0790CJA_0454CJA_1635
CBUR434922 COXBU7E912_1495COXBU7E912_1496COXBU7E912_1498COXBU7E912_1509COXBU7E912_1508COXBU7E912_1511COXBU7E912_1514COXBU7E912_1506COXBU7E912_1499
CBUR360115 COXBURSA331_A0682COXBURSA331_A0681COXBURSA331_A0679COXBURSA331_A0670COXBURSA331_A0671COXBURSA331_A0666COXBURSA331_A0663COXBURSA331_A0673COXBURSA331_A0678
CBUR227377 CBU_0568CBU_0567CBU_0565CBU_0556CBU_0557CBU_0552CBU_0549CBU_0559CBU_0564
CBLO291272 BPEN_325BPEN_324BPEN_323BPEN_319BPEN_318BPEN_320BPEN_316BPEN_321BPEN_322
CBLO203907 BFL317BFL316BFL315BFL311BFL310BFL312BFL308BFL313BFL314
BVIE269482 BCEP1808_2796BCEP1808_2797BCEP1808_2799BCEP1808_2382BCEP1808_0624BCEP1808_2383BCEP1808_3198BCEP1808_0622BCEP1808_2800
BTHA271848 BTH_I0590BTH_I0589BTH_I0587BTH_I1012BTH_I1213BTH_I1011BTH_I0142BTH_I1211BTH_I0586
BSP36773 BCEP18194_A6022BCEP18194_A6023BCEP18194_A6025BCEP18194_A5624BCEP18194_A3742BCEP18194_A5625BCEP18194_A6465BCEP18194_A3740BCEP18194_A6026
BPSE320372 BURPS1710B_A0934BURPS1710B_A0932BURPS1710B_A0930BURPS1710B_A1456BURPS1710B_A3726BURPS1710B_A1455BURPS1710B_A0384BURPS1710B_A3728BURPS1710B_A0929
BPSE272560 BPSL0673BPSL0672BPSL0670BPSL1162BPSL2936BPSL1161BPSL0182BPSL2938BPSL0669
BPET94624 BPET3655BPET3656BPET3657BPET3102BPET3326BPET3103BPET0431BPET3324BPET3658
BPAR257311 BPP1140BPP1139BPP1138BPP2419BPP1729BPP2418BPP4052BPP1731BPP1137
BMAL320389 BMA10247_2437BMA10247_2435BMA10247_2433BMA10247_0355BMA10247_2638BMA10247_0354BMA10247_2370BMA10247_2640BMA10247_2432
BMAL320388 BMASAVP1_A2721BMASAVP1_A2723BMASAVP1_A2725BMASAVP1_A1072BMASAVP1_A0368BMASAVP1_A1071BMASAVP1_A2789BMASAVP1_A0370BMASAVP1_A2726
BMAL243160 BMA_0225BMA_0223BMA_0221BMA_1887BMA_2451BMA_1888BMA_0158BMA_2453BMA_0220
BCEN331272 BCEN2424_2694BCEN2424_2695BCEN2424_2698BCEN2424_2297BCEN2424_0656BCEN2424_2298BCEN2424_3114BCEN2424_0654BCEN2424_2699
BCEN331271 BCEN_2082BCEN_2083BCEN_2086BCEN_1685BCEN_0173BCEN_1686BCEN_2500BCEN_0171BCEN_2087
BBRO257310 BB1356BB1355BB1354BB1868BB3379BB1867BB4525BB3377BB1353
BAMB398577 BAMMC406_2611BAMMC406_2612BAMMC406_2615BAMMC406_2214BAMMC406_0577BAMMC406_2215BAMMC406_3052BAMMC406_0575BAMMC406_2616
BAMB339670 BAMB_2747BAMB_2748BAMB_2750BAMB_2335BAMB_0551BAMB_2336BAMB_3169BAMB_0549BAMB_2751
ASP76114 EBA1337EBA1336EBA1335EBA3972EBA4383EBA3971EBA3041EBA4386EBA1334
ASP62928 AZO0779AZO0780AZO0781AZO3607AZO3217AZO3608AZO0178AZO3215AZO0782
ASAL382245 ASA_1073ASA_1072ASA_1071ASA_1065ASA_1069ASA_1066ASA_1064ASA_1067ASA_1061ASA_1068ASA_1070
APLE434271 APJL_0339APJL_0692APJL_0390APJL_0886APJL_1634APJL_0885APJL_1631APJL_0884APJL_0389
APLE416269 APL_0324APL_0694APL_0372APL_0874APL_1601APL_0873APL_1598APL_0872APL_0371
AHYD196024 AHA_3242AHA_3243AHA_3244AHA_3251AHA_3246AHA_3250AHA_3252AHA_3248AHA_3255AHA_3247AHA_3245
AFER243159 AFE_2443AFE_2442AFE_2441AFE_0161AFE_2580AFE_0160AFE_2579AFE_0536AFE_2578AFE_2440
AEHR187272 MLG_0395MLG_0396MLG_0397MLG_0404MLG_0399MLG_0402MLG_0405MLG_0173MLG_0400MLG_0398
ABOR393595 ABO_1935ABO_1936ABO_1937ABO_1952ABO_1949ABO_1953ABO_1956ABO_1947ABO_1940
ABAU360910 BAV0836BAV0837BAV0838BAV2210BAV2494BAV2211BAV3172BAV2492BAV0839


Organism features enriched in list (features available for 144 out of the 150 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00059511192
Arrangment:Pairs 0.001289040112
Arrangment:Singles 0.007127782286
Disease:Bubonic_plague 0.000209766
Disease:Dysentery 0.000209766
Disease:Gastroenteritis 0.00008521013
Disease:Legionnaire's_disease 0.003605944
Disease:Meningitis_and_septicemia 0.003605944
Endospores:No 3.671e-728211
GC_Content_Range4:0-40 2.184e-2010213
GC_Content_Range4:40-60 1.463e-1596224
GC_Content_Range7:0-30 0.0001217247
GC_Content_Range7:30-40 8.468e-158166
GC_Content_Range7:40-50 0.003120740117
GC_Content_Range7:50-60 3.604e-1256107
Genome_Size_Range5:0-2 4.780e-202155
Genome_Size_Range5:2-4 0.001602535197
Genome_Size_Range5:4-6 1.449e-1585184
Genome_Size_Range5:6-10 0.00033222247
Genome_Size_Range9:4-5 3.614e-64296
Genome_Size_Range9:5-6 5.049e-84388
Genome_Size_Range9:6-8 0.00002212138
Gram_Stain:Gram_Neg 3.181e-26133333
Habitat:Multiple 0.003777456178
Motility:No 1.270e-128151
Motility:Yes 7.737e-12101267
Optimal_temp.:- 0.009814174257
Optimal_temp.:35-37 0.0006879913
Oxygen_Req:Anaerobic 1.212e-103102
Oxygen_Req:Facultative 6.872e-1284201
Pathogenic_in:Animal 0.00209972666
Pathogenic_in:Human 0.006186864213
Pathogenic_in:No 0.000141238226
Shape:Coccobacillus 0.0055656711
Shape:Coccus 0.0000509782
Shape:Rod 4.096e-11118347
Shape:Spiral 0.0032515234
Temp._range:Mesophilic 0.0073129126473
Temp._range:Psychrophilic 0.007744369
Temp._range:Thermophilic 0.0004270135



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ORGANISMS CONTAINING AT MOST 2 GENES FROM THE GROUP:

Total number of orgs: 106
Effective number of orgs (counting one per cluster within 468 clusters): 92

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 102
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/272
TWHI203267 ncbi Tropheryma whipplei Twist2
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RALB246199 Ruminococcus albus 82
PTOR263820 ncbi Picrophilus torridus DSM 97900
PMAR74547 ncbi Prochlorococcus marinus MIT 93132
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 172
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong2
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 532
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-22
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1302
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566012
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1972
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5502
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL357544 ncbi Helicobacter pylori HPAG12
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
FJOH376686 ncbi Flavobacterium johnsoniae UW1012
ERUM302409 ncbi Ehrlichia ruminantium Gardel2
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden2
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas2
ECAN269484 ncbi Ehrlichia canis Jake2
DETH243164 ncbi Dehalococcoides ethenogenes 1952
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis2
CTRA471472 ncbi Chlamydia trachomatis 434/Bu2
CTET212717 ncbi Clostridium tetani E882
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1832
CPNE138677 ncbi Chlamydophila pneumoniae J1382
CPNE115713 ncbi Chlamydophila pneumoniae CWL0292
CPNE115711 ncbi Chlamydophila pneumoniae AR392
CNOV386415 ncbi Clostridium novyi NT2
CMUR243161 ncbi Chlamydia muridarum Nigg2
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3812
CFEL264202 ncbi Chlamydophila felis Fe/C-562
CCAV227941 ncbi Chlamydophila caviae GPIC2
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6572
CBOT441771 ncbi Clostridium botulinum A str. Hall2
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193972
CBOT36826 Clostridium botulinum A2
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)2
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ2
APER272557 ncbi Aeropyrum pernix K10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A2
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40182


Names of the homologs of the genes in the group in each of these orgs
  G6363   G6362   G6361   G6350   EG12851   EG11412   EG11255   EG10855   EG10607   EG10532   EG10168   
UURE95667 UU469
UURE95664 UUR10_0561UUR10_0526
UPAR505682
UMET351160
TWHI218496 TW0463TW0277
TWHI203267 TW283TW469
TVOL273116
TPEN368408
TKOD69014
TACI273075
STOK273063
SSOL273057
SMAR399550
SACI330779
RALB246199 GRAORF_0928GRAORF_4034
PTOR263820
PMAR74547 PMT0351PMT0715
PISL384616
PINT246198 PIN_A1724PIN_A2140
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
OTSU357244 OTBS_0333OTBS_2171
NPHA348780 NP1414A
MTHE349307
MTHE187420
MSYN262723 MS53_0389MS53_0319
MSTA339860
MSED399549
MPUL272635 MYPU_3350
MPNE272634
MPEN272633 MYPE3350MYPE5200
MMYC272632
MMOB267748 MMOB2760
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_1977
MMAR267377
MLAB410358 MLAB_1278
MKAN190192
MJAN243232
MHYO295358 MHP474
MHYO262722
MHYO262719
MHUN323259 MHUN_3011
MGEN243273
MFLO265311 MFL373
MCAP340047
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
LINT267671 LIC_12770LIC_12556
LINT189518 LA0855LA1124
LBOR355277 LBJ_2489LBJ_0206
LBOR355276 LBL_0618LBL_2876
IHOS453591
HWAL362976 HQ3705A
HSP64091 VNG6302C
HSAL478009 OE5193F
HPYL357544 HPAG1_0727HPAG1_1496
HMUK485914 HMUK_0760
HMAR272569 RRNAC2600
HBUT415426
FJOH376686 FJOH_1539FJOH_0744
ERUM302409 ERGA_CDS_09240ERGA_CDS_01150
ERUM254945 ERWE_CDS_09330ERWE_CDS_01190
ECHA205920 ECH_1155ECH_0178
ECAN269484 ECAJ_0927ECAJ_0120
DETH243164 DET_0003DET_0194
CTRA471473 CTLON_0138CTLON_0791
CTRA471472 CTL0138CTL0796
CTET212717 CTC_02055CTC_02067
CSUL444179
CPNE182082 CPB0947CPB0679
CPNE138677 CPJ0915CPJ0653
CPNE115713 CPN0915CPN0653
CPNE115711 CP_0951CP_0094
CNOV386415 NT01CX_1509NT01CX_0075
CMUR243161 TC_0150TC_0821
CMET456442 MBOO_1891
CMAQ397948
CKOR374847
CHOM360107 CHAB381_1290CHAB381_0473
CFEL264202 CF0162CF0919
CCAV227941 CCA_00854CCA_00087
CBOT515621 CLJ_B3241CLJ_B0697
CBOT441771 CLC_2881CLC_0670
CBOT441770 CLB_3009CLB_0655
CBOT36826 CBO2984CBO0615
CABO218497 CAB819
BXEN266265
BAPH372461 BCC_273BCC_274
AYEL322098
AURANTIMONAS
APHA212042 APH_1290APH_0207
APER272557
ALAI441768 ACL_0950ACL_0908
AFUL224325
ABUT367737 ABU_0881ABU_0402


Organism features enriched in list (features available for 99 out of the 106 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.008015259
Arrangment:Singles 0.002048261286
Disease:Leptospirosis 0.000790144
Disease:Pharyngitis 5.428e-788
Disease:bronchitis_and_pneumonitis 5.428e-788
Endospores:No 2.769e-962211
GC_Content_Range4:0-40 0.000333851213
GC_Content_Range4:60-100 2.988e-68145
GC_Content_Range7:0-30 2.085e-92547
GC_Content_Range7:40-50 0.005320429117
GC_Content_Range7:60-70 0.00001958134
Genome_Size_Range5:0-2 4.499e-1762155
Genome_Size_Range5:4-6 2.239e-107184
Genome_Size_Range5:6-10 0.0057943247
Genome_Size_Range9:0-1 3.993e-91827
Genome_Size_Range9:1-2 1.801e-844128
Genome_Size_Range9:4-5 0.0005844696
Genome_Size_Range9:5-6 3.733e-7188
Genome_Size_Range9:6-8 0.0055127138
Gram_Stain:Gram_Neg 0.000107640333
Gram_Stain:Gram_Pos 2.545e-77150
Habitat:Multiple 5.918e-711178
Habitat:Specialized 0.00008282053
Optimal_temp.:- 0.000032426257
Optimal_temp.:100 0.004773833
Optimal_temp.:35-40 0.004773833
Optimal_temp.:37 0.000081232106
Optimal_temp.:85 0.000790144
Oxygen_Req:Aerobic 0.002144020185
Oxygen_Req:Anaerobic 2.214e-838102
Oxygen_Req:Facultative 0.000330320201
Pathogenic_in:Ruminant 0.004773833
Salinity:Extreme_halophilic 0.001908457
Shape:Irregular_coccus 2.372e-121617
Shape:Pleomorphic 0.000415268
Shape:Rod 1.387e-932347
Shape:Sphere 9.843e-111619
Temp._range:Hyperthermophilic 9.401e-101723
Temp._range:Mesophilic 0.000025565473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 3
Effective number of orgs (counting one per cluster within 468 clusters): 2

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CBLO203907 ncbi Candidatus Blochmannia floridanus 0.00038866569
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN 0.00062116929
SDEG203122 ncbi Saccharophagus degradans 2-40 0.0058017167111


Names of the homologs of the genes in the group in each of these orgs
  G6363   G6362   G6361   G6350   EG12851   EG11412   EG11255   EG10855   EG10607   EG10532   EG10168   
CBLO203907 BFL317BFL316BFL315BFL311BFL310BFL312BFL308BFL313BFL314
CBLO291272 BPEN_325BPEN_324BPEN_323BPEN_319BPEN_318BPEN_320BPEN_316BPEN_321BPEN_322
SDEG203122 SDE_3301SDE_3302SDE_3303SDE_3344SDE_0534SDE_3310SDE_3343SDE_3309SDE_3340SDE_3308SDE_3304


Organism features enriched in list (features available for 3 out of the 3 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Genome_Size_Range9:0-1 0.0059397227
Optimal_temp.:4-37 0.005145811



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181430.7125
AST-PWY (arginine degradation II (AST pathway))120980.6579
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761180.6306
GLYCOCAT-PWY (glycogen degradation I)2461380.6050
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81700.5637
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001460.5543
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911140.5538
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951140.5428
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911410.5338
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961420.5318
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901400.5282
PWY-5918 (heme biosynthesis I)2721340.5186
PWY-1269 (CMP-KDO biosynthesis I)3251470.5167
PWY-5913 (TCA cycle variation IV)3011400.5073
GALACTITOLCAT-PWY (galactitol degradation)73610.5069
PWY-4041 (γ-glutamyl cycle)2791330.4970
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831040.4940
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251170.4910
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861340.4907
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391460.4853
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481470.4779
GLUCONSUPER-PWY (D-gluconate degradation)2291160.4739
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911040.4724
PWY-5386 (methylglyoxal degradation I)3051350.4624
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491200.4602
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491200.4602
GLUCARDEG-PWY (D-glucarate degradation I)152890.4581
LIPASYN-PWY (phospholipases)2121080.4513
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91640.4474
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149860.4412
DAPLYSINESYN-PWY (lysine biosynthesis I)3421400.4350
PWY-3162 (tryptophan degradation V (side chain pathway))94640.4339
P601-PWY (D-camphor degradation)95640.4295
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551170.4245
PWY-5148 (acyl-CoA hydrolysis)2271090.4239
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112700.4207
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50420.4140
PWY-6196 (serine racemization)102650.4103
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981480.4078
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135770.4055
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291330.4045



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6362   G6361   G6350   EG12851   EG11412   EG11255   EG10855   EG10607   EG10532   EG10168   
G63630.9999930.99990.9993160.998980.9991280.9992010.9990160.9987650.9992580.999792
G63620.9999310.9992880.9990220.999180.9992280.9990250.9987550.9993040.999836
G63610.9988520.9990760.9991990.9988850.9990850.9985190.9992740.999895
G63500.9990140.9994910.999960.9992530.9993110.9994570.998657
EG128510.9992450.9990530.9992420.9988870.9993890.999143
EG114120.9993740.9996080.9991250.9998110.999282
EG112550.999170.9993790.9994790.998817
EG108550.9990350.9996020.999197
EG106070.9986590.998662
EG105320.999397
EG10168



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PAIRWISE BLAST SCORES:

  G6363   G6362   G6361   G6350   EG12851   EG11412   EG11255   EG10855   EG10607   EG10532   EG10168   
G63630.0f0----------
G6362-0.0f0---------
G6361--0.0f0--------
G6350---0.0f0-------
EG12851----0.0f0------
EG11412-----0.0f0-----
EG11255------0.0f0----
EG10855-------0.0f0---
EG10607--------0.0f0--
EG10532---------0.0f0-
EG10168----------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10532 EG10607 EG10855 EG11255 EG11412 EG12851 G6350 (centered at EG11412)
EG10168 G6361 G6362 G6363 (centered at G6362)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6363   G6362   G6361   G6350   EG12851   EG11412   EG11255   EG10855   EG10607   EG10532   EG10168   
411/623417/623371/623400/62373/623193/623406/623101/623351/623405/623367/623
AAEO224324:0:Tyes945946-8--887-0-567
AAUR290340:2:Tyes210129-----17-
AAVE397945:0:Tyes333733383282--36392318-0-3281
ABAC204669:0:Tyes3544-35410--1-145613182339
ABAU360910:0:Tyes0121376-16651377-234316633
ABOR393595:0:Tyes01217-1418-21125
ABUT367737:0:Tyes-477-------0-
ACAU438753:0:Tyes-0----4175--5602
ACEL351607:0:Tyes37383910----0-457
ACRY349163:8:Tyes1336-1338-----63920390
ADEH290397:0:Tyes2533253136622214--0-230325392529
AEHR187272:0:Tyes221222223230225228231-0226224
AFER243159:0:Tyes2248224722461-23810238037123792245
AHYD196024:0:Tyes0129481061353
ALAI441768:0:Tyes-400--------
AMAR234826:0:Tyes-906----708-0--
AMAR329726:9:Tyes-392------4100745
AMET293826:0:Tyes165416520943--947-22948-
ANAE240017:0:Tyes63-650--2---257
AORE350688:0:Tyes56556701063----1415--
APHA212042:0:Tyes-1014----0----
APLE416269:0:Tyes036848--5501308549130554847
APLE434271:0:Tno033351--5221307521130452050
ASAL382245:5:Tyes12111048536079
ASP1667:3:Tyes2-0156--154--17-
ASP232721:2:Tyes308230830--33071330-3029-1
ASP62928:0:Tyes6136146153490-30953491-03093616
ASP62977:0:Tyes255525561--25022477-173725000
ASP76114:2:Tyes3211542-17841541-99817860
AVAR240292:3:Tyes2038465-0----22702625-
BABO262698:1:Tno327328----31--0330
BAFZ390236:2:Fyes--0766------186
BAMB339670:3:Tno2252225322551835-21836-267502256
BAMB398577:3:Tno2064206520681664-21665-250502069
BAMY326423:0:Tyes856854799886--884-01217-
BANT260799:0:Tno440438-466--464-0871-
BANT261594:2:Tno461459-489--487-0893-
BANT568206:2:Tyes39023900-3930--3928-04354-
BANT592021:2:Tno465463-493--491-0915-
BAPH198804:0:Tyes-014-3---2-
BAPH372461:0:Tyes-0-------1-
BBAC264462:0:Tyes-198-2391----1108-0
BBAC360095:0:Tyes855856857---0---858
BBRO257310:0:Tyes321527-2040526-320920380
BBUR224326:21:Fno--0711------176
BCAN483179:1:Tno347348----33--0350
BCEN331271:2:Tno1937193819411537-21538-235401942
BCEN331272:3:Tyes2037203820411641-21642-245502042
BCER226900:1:Tyes384382-411--409-0813-
BCER288681:0:Tno380378-406--404-0816-
BCER315749:1:Tyes8578550884--882-3951227-
BCER405917:1:Tyes409407-437--435-0888-
BCER572264:1:Tno393391-420--418-0837-
BCIC186490:0:Tyes-1-146-145--1481440
BCLA66692:0:Tyes3638-0--2-7211247-
BFRA272559:1:Tyes--8192741--0-3146--
BFRA295405:0:Tno--7892970--0-3372--
BGAR290434:2:Fyes--0747------182
BHAL272558:0:Tyes3537-0--2-12441973-
BHEN283166:0:Tyes636261---0---60
BHER314723:0:Fyes--0731------174
BJAP224911:0:Fyes368367366---0--199365
BLIC279010:0:Tyes2015201331322048--2046-02455-
BLON206672:0:Tyes-10167--103----
BMAL243160:1:Tno6664621533-20471534-0204961
BMAL320388:1:Tno229823002302691-0690-236622303
BMAL320389:1:Tyes2033203120291-22340-196722362028
BMEL224914:1:Tno18001799----0--321797
BMEL359391:1:Tno314315----32--0317
BOVI236:1:Tyes294295----32--0297
BPAR257311:0:Tno2101221-5561220-2785558-
BPER257313:0:Tyes5875865851724-14811725-01483-
BPET94624:0:Tyes3266326732682692-29242693-029223269
BPSE272560:1:Tyes491490488980-2769979-02771487
BPSE320372:1:Tno5475455431066-32151065-03217542
BPSE320373:1:Tno527524-1035-31331034-03135522
BPUM315750:0:Tyes841839-873--871-01234-
BQUI283165:0:Tyes321-------0
BSP107806:2:Tyes-014-3---2-
BSP36773:2:Tyes2325232623281923-21924-276902329
BSP376:0:Tyes012---362--1423
BSUB:0:Tyes1055105316931087--1085-01565-
BSUI204722:1:Tyes337338-34--33--0340
BSUI470137:0:Tno------34--0-
BSUI470137:1:Tno01--------3
BTHA271848:1:Tno447446444867-1061866-01059443
BTHE226186:0:Tyes--0525--2560-2361--
BTHU281309:1:Tno387385-413--411-0811-
BTHU412694:1:Tno344342-368--366-0742-
BTRI382640:1:Tyes656463---0---62
BTUR314724:0:Fyes--0728------174
BVIE269482:7:Tyes2153215421561747-21748-255502157
BWEI315730:4:Tyes1986198402013--2011-15752397-
CABO218497:0:Tyes------0----
CACE272562:1:Tyes--16811----0--
CAULO:0:Tyes-2----3426-151837520
CBEI290402:0:Tyes--34030----1056--
CBLO203907:0:Tyes987--324056
CBLO291272:0:Tno987--324056
CBOT36826:1:Tno---2343----0--
CBOT441770:0:Tyes---2311----0--
CBOT441771:0:Tno---1228----0--
CBOT441772:1:Tno--22372288----0--
CBOT498213:1:Tno--23122364----0--
CBOT508765:1:Tyes--28340----1841--
CBOT515621:2:Tyes---2505----0--
CBOT536232:0:Tno--29873037----4670-
CBUR227377:1:Tyes1716146-72-0913
CBUR360115:1:Tno1716146-72-0913
CBUR434922:2:Tno01313-1215-18104
CCAV227941:1:Tyes------761---0
CCHL340177:0:Tyes1000-----0-488-1253
CCON360104:2:Tyes-01344-----1013691696
CCUR360105:0:Tyes--1209-----0666-
CDES477974:0:Tyes592590-409--407-0405-
CDIF272563:1:Tyes1310130917291394--1392-01391-
CDIP257309:0:Tyes486485484543------0
CEFF196164:0:Fyes592591590662------0
CFEL264202:1:Tyes------0---783
CFET360106:0:Tyes--0-----1045557552
CGLU196627:0:Tyes780779778846------0
CHOM360107:1:Tyes--------8050-
CHUT269798:0:Tyes--7700--14---2614
CHYD246194:0:Tyes6567-29--32-033-
CJAP155077:0:Tyes114411431142319-0320132321141
CJEI306537:0:Tyes36-380--1---383
CJEJ192222:0:Tyes-0------1126936940
CJEJ195099:0:Tno-0------126310821086
CJEJ354242:2:Tyes-0------1102915919
CJEJ360109:0:Tyes-0------291474470
CJEJ407148:0:Tno-0------1143949953
CKLU431943:1:Tyes--195110----0--
CMET456442:0:Tyes--0--------
CMIC31964:2:Tyes434241118--116---0
CMIC443906:2:Tyes7576770--2---196
CMUR243161:1:Tyes------0---665
CNOV386415:0:Tyes--0994-------
CPEL335992:0:Tyes------0-1155133161
CPER195102:1:Tyes--01700----1711237-
CPER195103:0:Tno--01909----1920214-
CPER289380:3:Tyes--01638----1379209-
CPHY357809:0:Tyes692-1093627------0
CPNE115711:1:Tyes------845---0
CPNE115713:0:Tno------276---0
CPNE138677:0:Tno------275---0
CPNE182082:0:Tno------283---0
CPRO264201:0:Fyes--672---858---0
CPSY167879:0:Tyes17901791179249637081793
CRUT413404:0:Tyes-113907306-125305-4380-
CSAL290398:0:Tyes8088098100-8181-4816811
CSP501479:6:Fyes------209-0--
CSP501479:7:Fyes---------0-
CSP501479:8:Fyes321-------0
CSP78:2:Tyes-0----4734-147450452
CTEP194439:0:Tyes1224--0--124-273-1462
CTET212717:0:Tyes---0----11--
CTRA471472:0:Tyes------0---663
CTRA471473:0:Tno------0---663
CVES412965:0:Tyes-115836290-126--4090-
CVIO243365:0:Tyes37483749375014-213-396803751
DARO159087:0:Tyes34473448344957-43958-04413450
DDES207559:0:Tyes671-831650--777-01476830
DETH243164:0:Tyes---0-----184-
DGEO319795:1:Tyes699-712------0545
DHAF138119:0:Tyes1010100801060--1058-10711057-
DNOD246195:0:Tyes962961670--0217-69423
DOLE96561:0:Tyes707705-0--1-51323761696
DPSY177439:2:Tyes541-7531549--1579-01561752
DRAD243230:3:Tyes617718802------8000
DRED349161:0:Tyes20-37--34-6233-
DSHI398580:2:Tyes----------0
DSHI398580:5:Tyes9799781580---31-5450-
DSP216389:0:Tyes--12550-----158-
DSP255470:0:Tno--11860-----169-
DVUL882:1:Tyes1092--1165--831-04091071
ECAN269484:0:Tyes-816--------0
ECAR218491:0:Tyes161514485360713
ECHA205920:0:Tyes-936--------0
ECOL199310:0:Tno201918596370817
ECOL316407:0:Tno262524596370823
ECOL331111:6:Tno292827596370826
ECOL362663:0:Tno191817596370816
ECOL364106:1:Tno2221206107380919
ECOL405955:2:Tyes191817596-70816
ECOL409438:6:Tyes2928276107380926
ECOL413997:0:Tno232221596370820
ECOL439855:4:Tno282726596370825
ECOL469008:0:Tno012191518211724163
ECOL481805:0:Tno012211720231926183
ECOL585034:0:Tno272625596370824
ECOL585035:0:Tno201918596370817
ECOL585055:0:Tno272625596370824
ECOL585056:2:Tno252423596370822
ECOL585057:0:Tno191817596370816
ECOL585397:0:Tno212019596370818
ECOL83334:0:Tno262524596370823
ECOLI:0:Tno272625596370824
ECOO157:0:Tno252423596370822
EFAE226185:3:Tyes1619161702047-----93-
EFER585054:1:Tyes012231922242127203
ELIT314225:0:Tyes551552----1508-0-1721
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