CANDIDATE ID: 108

CANDIDATE ID: 108

NUMBER OF GENES: 11
AVERAGE SCORE:    9.9940229e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7327 (trmJ) (b2532)
   Products of gene:
     - G7327-MONOMER (tRNA:Cm32/Um32 methyltransferase)
     - CPLX0-7420 (tRNA:Cm32/Um32 methyltransferase)
       Reactions:
        all-tRNAs + S-adenosyl-L-methionine  ->  a tRNA containing 2'-O-methylcytosine or 2'-O-methyluridine + S-adenosyl-L-homocysteine

- G7326 (iscR) (b2531)
   Products of gene:
     - G7326-MONOMER (IscR transcriptional dual regulator)
       Regulatees:
        TU0-14811 (rnlA)
        TU0-8481 (nfuA)
        TU0-8480 (erpA)
        TU0-8482 (ydiU)
        TU0-8484 (napFDAGHBC)
        TU0-1881 (iscRSUA)
        TU0-2621 (sufABCDSE)
        TU00288 (hyaABCDEF)

- G7325 (iscS) (b2530)
   Products of gene:
     - G7325-MONOMER (cysteine desulfurase monomer)
     - CPLX0-248 (cysteine desulfurase)
       Reactions:
        a ThiI sulfur-carrier protein + L-cysteine  ->  a ThiI persulfide + L-alanine
         In pathways
         THISYN-PWY (thiamin biosynthesis I)
        L-cysteine + a protein L-cysteine  ->  a protein-S-sulfanylcysteine + L-alanine
         In pathways
         PWY0-1061 (superpathway of alanine biosynthesis)
         PWY0-1021 (alanine biosynthesis III)

- G7324 (iscU) (b2529)
   Products of gene:
     - G7324-MONOMER (scaffold protein involved in iron-sulfur cluster assembly)

- EG12311 (iscX) (b2524)
   Products of gene:
     - EG12311-MONOMER (protein with possible role in iron-sulfur cluster biogenesis)

- EG12132 (iscA) (b2528)
   Products of gene:
     - EG12132-MONOMER (iron-sulfur cluster assembly protein)

- EG12131 (hscB) (b2527)
   Products of gene:
     - EG12131-MONOMER (Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly)

- EG12130 (hscA) (b2526)
   Products of gene:
     - EG12130-MONOMER (chaperone, member of Hsp70 protein family)
       Reactions:
        ATP + H2O  ->  ADP + phosphate + 2 H+

- EG11328 (fdx) (b2525)
   Products of gene:
     - FERREDOXIN-MONOMER (reduced ferredoxin)
     - OX-FERREDOXIN (oxidized ferredoxin)

- EG10983 (suhB) (b2533)
   Products of gene:
     - EG10983-MONOMER (inositol monophosphatase)
       Reactions:
        glycerol 2-phosphate + H2O  =  phosphate + glycerol
        1D-myo-inositol (1)-monophosphate + H2O  =  phosphate + myo-inositol
         In pathways
         PWY-4702 (PWY-4702)

- EG10015 (rodZ) (b2516)
   Products of gene:
     - EG10015-MONOMER (rod shape-determining membrane protein)



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 146
Effective number of orgs (counting one per cluster within 468 clusters): 93

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175811
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295311
YPES386656 ncbi Yersinia pestis Pestoides F11
YPES377628 ncbi Yersinia pestis Nepal51611
YPES360102 ncbi Yersinia pestis Antiqua11
YPES349746 ncbi Yersinia pestis Angola11
YPES214092 ncbi Yersinia pestis CO9211
YPES187410 ncbi Yersinia pestis KIM 1011
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808111
VVUL216895 ncbi Vibrio vulnificus CMCP611
VVUL196600 ncbi Vibrio vulnificus YJ01611
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 221063311
VFIS312309 ncbi Vibrio fischeri ES11411
VEIS391735 ncbi Verminephrobacter eiseniae EF01-29
VCHO345073 ncbi Vibrio cholerae O39511
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696111
TDEN292415 ncbi Thiobacillus denitrificans ATCC 2525911
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT211
SSP94122 ncbi Shewanella sp. ANA-311
SSON300269 ncbi Shigella sonnei Ss04611
SSED425104 ncbi Shewanella sediminis HAW-EB311
SPRO399741 ncbi Serratia proteamaculans 56811
SPEA398579 ncbi Shewanella pealeana ATCC 70034511
SONE211586 ncbi Shewanella oneidensis MR-111
SLOI323850 ncbi Shewanella loihica PV-411
SHIGELLA ncbi Shigella flexneri 2a str. 2457T11
SHAL458817 ncbi Shewanella halifaxensis HAW-EB411
SFLE373384 ncbi Shigella flexneri 5 str. 840111
SFLE198214 ncbi Shigella flexneri 2a str. 30111
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47611
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915011
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1811
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty211
SDYS300267 ncbi Shigella dysenteriae Sd19711
SDEN318161 ncbi Shewanella denitrificans OS21711
SBOY300268 ncbi Shigella boydii Sb22711
SBAL402882 ncbi Shewanella baltica OS18511
SBAL399599 ncbi Shewanella baltica OS19511
RSOL267608 ncbi Ralstonia solanacearum GMI100011
RMET266264 ncbi Ralstonia metallidurans CH3411
RFER338969 ncbi Rhodoferax ferrireducens T1189
REUT381666 ncbi Ralstonia eutropha H1611
REUT264198 ncbi Ralstonia eutropha JMP13411
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC300011
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a11
PSTU379731 ncbi Pseudomonas stutzeri A150111
PSP56811 Psychrobacter sp.11
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-19
PSP296591 ncbi Polaromonas sp. JS66610
PPUT76869 ncbi Pseudomonas putida GB-111
PPUT351746 ncbi Pseudomonas putida F111
PPUT160488 ncbi Pseudomonas putida KT244011
PPRO298386 ncbi Photobacterium profundum SS911
PNAP365044 ncbi Polaromonas naphthalenivorans CJ29
PMUL272843 ncbi Pasteurella multocida multocida Pm7010
PMEN399739 ncbi Pseudomonas mendocina ymp11
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO111
PING357804 ncbi Psychromonas ingrahamii 3711
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC12510
PFLU220664 ncbi Pseudomonas fluorescens Pf-511
PFLU216595 ncbi Pseudomonas fluorescens SBW2511
PFLU205922 ncbi Pseudomonas fluorescens Pf0-111
PENT384676 ncbi Pseudomonas entomophila L4811
PCRY335284 ncbi Psychrobacter cryohalolentis K510
PATL342610 ncbi Pseudoalteromonas atlantica T6c10
PARC259536 ncbi Psychrobacter arcticus 273-410
PAER208964 ncbi Pseudomonas aeruginosa PAO111
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA1411
NMEN374833 ncbi Neisseria meningitidis 05344210
NMEN272831 ncbi Neisseria meningitidis FAM1810
NMEN122587 ncbi Neisseria meningitidis Z249110
NMEN122586 ncbi Neisseria meningitidis MC5810
NGON242231 ncbi Neisseria gonorrhoeae FA 109010
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E11
MPET420662 ncbi Methylibium petroleiphilum PM110
MMAG342108 ncbi Magnetospirillum magneticum AMB-110
MFLA265072 ncbi Methylobacillus flagellatus KT11
MCAP243233 ncbi Methylococcus capsulatus Bath11
LCHO395495 ncbi Leptothrix cholodnii SP-610
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857811
JSP375286 ncbi Janthinobacterium sp. Marseille11
HSOM228400 ncbi Haemophilus somnus 233610
HSOM205914 ncbi Haemophilus somnus 129PT10
HINF71421 ncbi Haemophilus influenzae Rd KW2011
HINF374930 ncbi Haemophilus influenzae PittEE10
HINF281310 ncbi Haemophilus influenzae 86-028NP11
HDUC233412 ncbi Haemophilus ducreyi 35000HP11
HARS204773 ncbi Herminiimonas arsenicoxydans10
ESP42895 Enterobacter sp.11
EFER585054 ncbi Escherichia fergusonii ATCC 3546911
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H711
ECOL585397 ncbi Escherichia coli ED1a11
ECOL585057 ncbi Escherichia coli IAI3911
ECOL585056 ncbi Escherichia coli UMN02611
ECOL585055 ncbi Escherichia coli 5598911
ECOL585035 ncbi Escherichia coli S8811
ECOL585034 ncbi Escherichia coli IAI111
ECOL481805 ncbi Escherichia coli ATCC 873911
ECOL469008 ncbi Escherichia coli BL21(DE3)11
ECOL439855 ncbi Escherichia coli SMS-3-511
ECOL413997 ncbi Escherichia coli B str. REL60611
ECOL409438 ncbi Escherichia coli SE1111
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8911
ECOL362663 ncbi Escherichia coli 53611
ECOL331111 ncbi Escherichia coli E24377A11
ECOL316407 ncbi Escherichia coli K-12 substr. W311011
ECOL199310 ncbi Escherichia coli CFT07311
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104311
DARO159087 ncbi Dechloromonas aromatica RCB11
CVIO243365 ncbi Chromobacterium violaceum ATCC 1247211
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA10
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)10
CPSY167879 ncbi Colwellia psychrerythraea 34H11
BVIE269482 ncbi Burkholderia vietnamiensis G411
BTHA271848 ncbi Burkholderia thailandensis E26410
BSP36773 Burkholderia sp.11
BPSE320373 ncbi Burkholderia pseudomallei 66810
BPSE320372 ncbi Burkholderia pseudomallei 1710b10
BPSE272560 ncbi Burkholderia pseudomallei K9624310
BPET94624 Bordetella petrii10
BPER257313 ncbi Bordetella pertussis Tohama I10
BPAR257311 ncbi Bordetella parapertussis 1282210
BMAL320389 ncbi Burkholderia mallei NCTC 1024710
BMAL320388 ncbi Burkholderia mallei SAVP110
BMAL243160 ncbi Burkholderia mallei ATCC 2334410
BCEN331272 ncbi Burkholderia cenocepacia HI242411
BCEN331271 ncbi Burkholderia cenocepacia AU 105411
BBRO257310 ncbi Bordetella bronchiseptica RB5010
BAMB398577 ncbi Burkholderia ambifaria MC40-611
BAMB339670 ncbi Burkholderia ambifaria AMMD11
ASP76114 ncbi Aromatoleum aromaticum EbN111
ASP62977 ncbi Acinetobacter sp. ADP111
ASP62928 ncbi Azoarcus sp. BH7211
ASP232721 ncbi Acidovorax sp. JS429
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44910
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL0311
APLE416269 ncbi Actinobacillus pleuropneumoniae L2011
AHYD196024 Aeromonas hydrophila dhakensis10
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 2327011
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C9
ABAU360910 ncbi Bordetella avium 197N10
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin34510
AAVE397945 ncbi Acidovorax citrulli AAC00-110


Names of the homologs of the genes in the group in each of these orgs
  G7327   G7326   G7325   G7324   EG12311   EG12132   EG12131   EG12130   EG11328   EG10983   EG10015   
YPSE349747 YPSIP31758_1166YPSIP31758_1167YPSIP31758_1168YPSIP31758_1169YPSIP31758_1174YPSIP31758_1170YPSIP31758_1171YPSIP31758_1172YPSIP31758_1173YPSIP31758_1165YPSIP31758_1185
YPSE273123 YPTB2861YPTB2860YPTB2859YPTB2858YPTB2853YPTB2857YPTB2856YPTB2855YPTB2854YPTB2862YPTB2842
YPES386656 YPDSF_2243YPDSF_2242YPDSF_2241YPDSF_2240YPDSF_2235YPDSF_2239YPDSF_2238YPDSF_2237YPDSF_2236YPDSF_2244YPDSF_2225
YPES377628 YPN_1239YPN_1240YPN_1241YPN_1242YPN_1247YPN_1243YPN_1244YPN_1245YPN_1246YPN_1238YPN_1258
YPES360102 YPA_2339YPA_2338YPA_2337YPA_2336YPA_2331YPA_2335YPA_2334YPA_2333YPA_2332YPA_2340YPA_2320
YPES349746 YPANGOLA_A0437YPANGOLA_A0436YPANGOLA_A0435YPANGOLA_A0434YPANGOLA_A0429YPANGOLA_A0433YPANGOLA_A0432YPANGOLA_A0431YPANGOLA_A0430YPANGOLA_A0438YPANGOLA_A0419
YPES214092 YPO2898YPO2897YPO2896YPO2895YPO2890YPO2894YPO2893YPO2892YPO2891YPO2899YPO2880
YPES187410 Y1332Y1333Y1334Y1335Y1341Y1336Y1338Y1339Y1340Y1331Y1352
YENT393305 YE1055YE1056YE1057YE1058YE1063YE1059YE1060YE1061YE1062YE1054YE1072
VVUL216895 VV1_0440VV1_0439VV1_0438VV1_0437VV1_0432VV1_0436VV1_0435VV1_0434VV1_0433VV1_0441VV1_0428
VVUL196600 VV0753VV0754VV0755VV0756VV0761VV0757VV0758VV0759VV0760VV0752VV0765
VPAR223926 VP0594VP0595VP0596VP0597VP0602VP0598VP0599VP0600VP0601VP0593VP0607
VFIS312309 VF0615VF0616VF0617VF0618VF0623VF0619VF0620VF0621VF0622VF0614VF0628
VEIS391735 VEIS_4249VEIS_2372VEIS_2373VEIS_2374VEIS_2375VEIS_2376VEIS_2377VEIS_2378VEIS_4248
VCHO345073 VC0395_A0275VC0395_A0276VC0395_A0277VC0395_A0278VC0395_A0283VC0395_A0279VC0395_A0280VC0395_A0281VC0395_A0282VC0395_A0274VC0395_A0287
VCHO VC0746VC0747VC0748VC0749VC0754VC0750VC0751VC0752VC0753VC0745VC0758
TDEN292415 TBD_1161TBD_1163TBD_1164TBD_1165TBD_1170TBD_1166TBD_1167TBD_1168TBD_1169TBD_1160TBD_0593
STYP99287 STM2545STM2544STM2543STM2542STM2537STM2541STM2540STM2539STM2538STM2546STM2524
SSP94122 SHEWANA3_2283SHEWANA3_2281SHEWANA3_2280SHEWANA3_2279SHEWANA3_2273SHEWANA3_2278SHEWANA3_2277SHEWANA3_2276SHEWANA3_2275SHEWANA3_2284SHEWANA3_1228
SSON300269 SSO_2614SSO_2613SSO_2612SSO_2611SSO_2606SSO_2610SSO_2609SSO_2608SSO_2607SSO_2615SSO_2598
SSED425104 SSED_2874SSED_2872SSED_2871SSED_2870SSED_2863SSED_2869SSED_2868SSED_2867SSED_2866SSED_2875SSED_1431
SPRO399741 SPRO_3629SPRO_3628SPRO_3627SPRO_3626SPRO_3621SPRO_3625SPRO_3624SPRO_3623SPRO_3622SPRO_3630SPRO_3610
SPEA398579 SPEA_1485SPEA_1487SPEA_1488SPEA_1489SPEA_1496SPEA_1490SPEA_1491SPEA_1492SPEA_1493SPEA_1484SPEA_1304
SONE211586 SO_2261SO_2263SO_2264SO_2265SO_2271SO_2266SO_2267SO_2268SO_2269SO_2260SO_3313
SLOI323850 SHEW_2320SHEW_2318SHEW_2317SHEW_2316SHEW_2311SHEW_2315SHEW_2314SHEW_2313SHEW_2312SHEW_2321SHEW_1289
SHIGELLA S2751S2750YFHOS2748YFHJYFHFYFHEHSCAFDXSUHBYFGA
SHAL458817 SHAL_1569SHAL_1571SHAL_1572SHAL_1573SHAL_1578SHAL_1574SHAL_1575SHAL_1576SHAL_1577SHAL_1568SHAL_1366
SFLE373384 SFV_2580SFV_2579SFV_2578SFV_2577SFV_2572SFV_2576SFV_2575SFV_2574SFV_2573SFV_2581SFV_2563
SFLE198214 AAN44078.1AAN44077.1AAN44076.1AAN44075.1AAN44070.1AAN44074.1AAN44073.1AAN44072.1AAN44071.1AAN44079.1AAN44062.1
SENT454169 SEHA_C2807SEHA_C2806SEHA_C2805SEHA_C2804SEHA_C2799SEHA_C2803SEHA_C2802SEHA_C2801SEHA_C2800SEHA_C2808SEHA_C2782
SENT321314 SCH_2539SCH_2538SCH_2537SCH_2536SCH_2532SCH_2535SCH_2534SCH_2533SCH_2540SCH_2521
SENT295319 SPA0321SPA0322SPA0323SPA0324SPA0329SPA0325SPA0326SPA0327SPA0328SPA0320SPA0343
SENT220341 STY2791STY2790STY2789STY2788STY2783STY2787STY2786STY2785STY2784STY2792STY2769
SENT209261 T0311T0312T0313T0314T0319T0315T0316T0317T0318T0310T0332
SDYS300267 SDY_2728SDY_2727SDY_2726SDY_2725SDY_2720SDY_2724SDY_2723SDY_2722SDY_2721SDY_2729SDY_2712
SDEN318161 SDEN_1455SDEN_1457SDEN_1458SDEN_1459SDEN_0277SDEN_1460SDEN_1461SDEN_1462SDEN_1463SDEN_1454SDEN_1255
SBOY300268 SBO_2556SBO_2555SBO_2554SBO_2553SBO_2548SBO_2552SBO_2551SBO_2550SBO_2549SBO_2557SBO_2540
SBAL402882 SHEW185_2389SHEW185_2387SHEW185_2386SHEW185_2385SHEW185_2379SHEW185_2384SHEW185_2383SHEW185_2382SHEW185_2381SHEW185_2390SHEW185_3006
SBAL399599 SBAL195_2505SBAL195_2503SBAL195_2502SBAL195_2501SBAL195_2495SBAL195_2500SBAL195_2499SBAL195_2498SBAL195_2497SBAL195_2506SBAL195_3149
RSOL267608 RSC1161RSC1018RSC1019RSC1020RSC1026RSC1021RSC1023RSC1024RSC1025RSC1160RSC1214
RMET266264 RMET_1079RMET_1024RMET_1025RMET_1026RMET_1031RMET_1027RMET_1028RMET_1029RMET_1030RMET_1078RMET_2107
RFER338969 RFER_2891RFER_2176RFER_2177RFER_2178RFER_2179RFER_2180RFER_2181RFER_2182RFER_2892
REUT381666 H16_A1215H16_A1157H16_A1158H16_A1159H16_A1165H16_A1160H16_A1162H16_A1163H16_A1164H16_A1214H16_A2365
REUT264198 REUT_A1116REUT_A1057REUT_A1058REUT_A1059REUT_A1065REUT_A1060REUT_A1062REUT_A1063REUT_A1064REUT_A1115REUT_A2087
PSYR223283 PSPTO_1420PSPTO_1422PSPTO_1423PSPTO_1424PSPTO_1429PSPTO_1425PSPTO_1426PSPTO_1427PSPTO_1428PSPTO_1419PSPTO_1433
PSYR205918 PSYR_1234PSYR_1236PSYR_1237PSYR_1238PSYR_1243PSYR_1239PSYR_1240PSYR_1241PSYR_1242PSYR_1233PSYR_1247
PSTU379731 PST_3045PST_3043PST_3042PST_3041PST_3036PST_3040PST_3039PST_3038PST_3037PST_3046PST_3032
PSP56811 PSYCPRWF_1243PSYCPRWF_1628PSYCPRWF_1629PSYCPRWF_1630PSYCPRWF_0641PSYCPRWF_1631PSYCPRWF_1632PSYCPRWF_1633PSYCPRWF_1634PSYCPRWF_0412PSYCPRWF_1903
PSP312153 PNUC_0853PNUC_1494PNUC_1493PNUC_1492PNUC_1491PNUC_1490PNUC_1489PNUC_1488PNUC_0854
PSP296591 BPRO_3292BPRO_2177BPRO_2178BPRO_2179BPRO_2180BPRO_2181BPRO_2182BPRO_2183BPRO_3293BPRO_2609
PPUT76869 PPUTGB1_0882PPUTGB1_0884PPUTGB1_0885PPUTGB1_0886PPUTGB1_0891PPUTGB1_0887PPUTGB1_0888PPUTGB1_0889PPUTGB1_0890PPUTGB1_0881PPUTGB1_0895
PPUT351746 PPUT_0869PPUT_0871PPUT_0872PPUT_0873PPUT_0878PPUT_0874PPUT_0875PPUT_0876PPUT_0877PPUT_0868PPUT_0882
PPUT160488 PP_0839PP_0841PP_0842PP_0843PP_0848PP_0844PP_0845PP_0846PP_0847PP_0838PP_0852
PPRO298386 PBPRA0748PBPRA0749PBPRA0750PBPRA0751PBPRA0756PBPRA0752PBPRA0753PBPRA0754PBPRA0755PBPRA0747PBPRA0762
PNAP365044 PNAP_1381PNAP_2291PNAP_2290PNAP_1568PNAP_2288PNAP_2287PNAP_2286PNAP_2285PNAP_1380
PMUL272843 PM0316PM0317PM0318PM0319PM0320PM0321PM0322PM0323PM0315PM2009
PMEN399739 PMEN_3514PMEN_3512PMEN_3511PMEN_3510PMEN_3505PMEN_3509PMEN_3508PMEN_3507PMEN_3506PMEN_3515PMEN_3501
PLUM243265 PLU3285PLU3284PLU3283PLU3282PLU3277PLU3281PLU3280PLU3279PLU3278PLU3286PLU1375
PING357804 PING_1322PING_1323PING_1324PING_1325PING_1330PING_1326PING_1327PING_1328PING_1329PING_1321PING_1167
PHAL326442 PSHAA2673PSHAA2672PSHAA2671PSHAA2670PSHAA2669PSHAA2668PSHAA2667PSHAA2666PSHAA0323PSHAB0139
PFLU220664 PFL_4968PFL_4966PFL_4965PFL_4964PFL_4959PFL_4963PFL_4962PFL_4961PFL_4960PFL_4969PFL_4955
PFLU216595 PFLU5071PFLU5069PFLU5068PFLU5067PFLU5062PFLU5066PFLU5065PFLU5064PFLU5063PFLU5072PFLU5058
PFLU205922 PFL_4615PFL_4613PFL_4612PFL_4611PFL_4606PFL_4610PFL_4609PFL_4608PFL_4607PFL_4616PFL_4602
PENT384676 PSEEN1006PSEEN1009PSEEN1010PSEEN1011PSEEN1016PSEEN1012PSEEN1013PSEEN1014PSEEN1015PSEEN1005PSEEN1020
PCRY335284 PCRYO_1212PCRYO_1655PCRYO_1656PCRYO_1657PCRYO_0547PCRYO_1658PCRYO_1659PCRYO_1660PCRYO_1661PCRYO_0246
PATL342610 PATL_1235PATL_1237PATL_1238PATL_1239PATL_1240PATL_1241PATL_1242PATL_1243PATL_1232PATL_3127
PARC259536 PSYC_1178PSYC_1476PSYC_1477PSYC_1478PSYC_0559PSYC_1479PSYC_1480PSYC_1481PSYC_1482PSYC_0222
PAER208964 PA3817PA3815PA3814PA3813PA3808PA3812PA3811PA3810PA3809PA3818PA3804
PAER208963 PA14_14690PA14_14710PA14_14730PA14_14740PA14_14810PA14_14750PA14_14770PA14_14780PA14_14800PA14_14680PA14_14860
NMEN374833 NMCC_1260NMCC_1291NMCC_1293NMCC_1295NMCC_1056NMCC_1296NMCC_1297NMCC_1050NMCC_1054NMCC_1259
NMEN272831 NMC1284NMC1314NMC1315NMC1317NMC1076NMC1318NMC1319NMC1070NMC1073NMC1283
NMEN122587 NMA1560NMA1593NMA1594NMA1596NMA1347NMA1597NMA1598NMA1340NMA1344NMA1559
NMEN122586 NMB_1348NMB_1378NMB_1379NMB_1380NMB_1175NMB_1381NMB_1383NMB_1169NMB_1172NMB_1347
NGON242231 NGO0670NGO0637NGO0636NGO0633NGO0823NGO0632NGO0630NGO0829NGO0825NGO0671
MSUC221988 MS1728MS1727MS1726MS1724MS1719MS1723MS1722MS1721MS1720MS1729MS1918
MPET420662 MPE_A2840MPE_A2263MPE_A2262MPE_A2261MPE_A2260MPE_A2259MPE_A2258MPE_A2257MPE_A2841MPE_A1997
MMAG342108 AMB2129AMB3030AMB3028AMB3027AMB3022AMB3026AMB3025AMB3024AMB3023AMB1286
MFLA265072 MFLA_0812MFLA_0810MFLA_0808MFLA_0807MFLA_1920MFLA_0806MFLA_0805MFLA_0804MFLA_0803MFLA_0813MFLA_1621
MCAP243233 MCA_2610MCA_2883MCA_0247MCA_0248MCA_2825MCA_0250MCA_0251MCA_0252MCA_0253MCA_2609MCA_1363
LCHO395495 LCHO_1219LCHO_1048LCHO_1360LCHO_1361LCHO_1045LCHO_1044LCHO_1364LCHO_1042LCHO_1218LCHO_2869
KPNE272620 GKPORF_B2198GKPORF_B2197GKPORF_B2196GKPORF_B2195GKPORF_B2190GKPORF_B2194GKPORF_B2193GKPORF_B2192GKPORF_B2191GKPORF_B2199GKPORF_B2179
JSP375286 MMA_1299MMA_1251MMA_1252MMA_1253MMA_1258MMA_1254MMA_1255MMA_1256MMA_1257MMA_1298MMA_2128
HSOM228400 HSM_0152HSM_0153HSM_0154HSM_0155HSM_0156HSM_0157HSM_0158HSM_0159HSM_0151HSM_0728
HSOM205914 HS_0279HS_0280HS_0281HS_0282HS_0283HS_0284HS_0285HS_0286HS_0278HS_0403
HINF71421 HI_0380HI_0379HI_0378HI_0377HI_0371HI_0376HI_0375HI_0373HI_0372HI_0937HI_0367
HINF374930 CGSHIEE_01110CGSHIEE_01115CGSHIEE_01120CGSHIEE_01150CGSHIEE_01125CGSHIEE_01130CGSHIEE_01140CGSHIEE_01145CGSHIEE_07280CGSHIEE_01175
HINF281310 NTHI0500NTHI0499NTHI0498NTHI0497NTHI0491NTHI0496NTHI0495NTHI0493NTHI0492NTHI1108NTHI0487
HDUC233412 HD_1664HD_1080HD_1082HD_1083HD_1089HD_1084HD_1085HD_1087HD_1088HD_0440HD_1036
HARS204773 HEAR2164HEAR2240HEAR2239HEAR2238HEAR2233HEAR2237HEAR2236HEAR2235HEAR2234HEAR2165
ESP42895 ENT638_3029ENT638_3028ENT638_3027ENT638_3026ENT638_3021ENT638_3025ENT638_3024ENT638_3023ENT638_3022ENT638_3030ENT638_3010
EFER585054 EFER_0640EFER_0641EFER_0642EFER_0643EFER_0648EFER_0644EFER_0645EFER_0646EFER_0647EFER_0639EFER_0656
ECOO157 Z3799Z3798YFHOZ3796YFHJYFHFYFHEHSCAFDXYFGA
ECOL83334 ECS3398ECS3397ECS3396ECS3395ECS3390ECS3394ECS3393ECS3392ECS3391ECS3399ECS3378
ECOL585397 ECED1_2963ECED1_2962ECED1_2961ECED1_2960ECED1_2955ECED1_2959ECED1_2958ECED1_2957ECED1_2956ECED1_2964ECED1_2947
ECOL585057 ECIAI39_2733ECIAI39_2732ECIAI39_2731ECIAI39_2730ECIAI39_2725ECIAI39_2729ECIAI39_2728ECIAI39_2727ECIAI39_2726ECIAI39_2734ECIAI39_2717
ECOL585056 ECUMN_2852ECUMN_2851ECUMN_2850ECUMN_2849ECUMN_2844ECUMN_2848ECUMN_2847ECUMN_2846ECUMN_2845ECUMN_2853ECUMN_2836
ECOL585055 EC55989_2817EC55989_2816EC55989_2815EC55989_2814EC55989_2809EC55989_2813EC55989_2812EC55989_2811EC55989_2810EC55989_2818EC55989_2801
ECOL585035 ECS88_2708ECS88_2707ECS88_2706ECS88_2705ECS88_2700ECS88_2704ECS88_2703ECS88_2702ECS88_2701ECS88_2709ECS88_2692
ECOL585034 ECIAI1_2584ECIAI1_2583ECIAI1_2582ECIAI1_2581ECIAI1_2576ECIAI1_2580ECIAI1_2579ECIAI1_2578ECIAI1_2577ECIAI1_2585ECIAI1_2568
ECOL481805 ECOLC_1145ECOLC_1146ECOLC_1147ECOLC_1148ECOLC_1153ECOLC_1149ECOLC_1150ECOLC_1151ECOLC_1152ECOLC_1144ECOLC_1161
ECOL469008 ECBD_1152ECBD_1153ECBD_1154ECBD_1155ECBD_1160ECBD_1156ECBD_1157ECBD_1158ECBD_1159ECBD_1151ECBD_1170
ECOL439855 ECSMS35_2685ECSMS35_2684ECSMS35_2683ECSMS35_2682ECSMS35_2676ECSMS35_2681ECSMS35_2679ECSMS35_2678ECSMS35_2677ECSMS35_2686ECSMS35_2668
ECOL413997 ECB_02424ECB_02423ECB_02422ECB_02421ECB_02416ECB_02420ECB_02419ECB_02418ECB_02417ECB_02425ECB_02408
ECOL409438 ECSE_2819ECSE_2817ECSE_2816ECSE_2815ECSE_2810ECSE_2814ECSE_2813ECSE_2812ECSE_2811ECSE_2820ECSE_2802
ECOL405955 APECO1_3993APECO1_3994APECO1_3995APECO1_3996APECO1_3997APECO1_3998APECO1_3999APECO1_4000APECO1_3992APECO1_4008
ECOL364106 UTI89_C2854UTI89_C2853UTI89_C2852UTI89_C2851UTI89_C2846UTI89_C2850UTI89_C2849UTI89_C2848UTI89_C2847UTI89_C2855UTI89_C2837
ECOL362663 ECP_2537ECP_2536ECP_2535ECP_2534ECP_2529ECP_2533ECP_2532ECP_2531ECP_2530ECP_2538ECP_2521
ECOL331111 ECE24377A_2817ECE24377A_2816ECE24377A_2815ECE24377A_2814ECE24377A_2808ECE24377A_2813ECE24377A_2811ECE24377A_2810ECE24377A_2809ECE24377A_2818ECE24377A_2800
ECOL316407 ECK2529:JW2516:B2532ECK2528:JW2515:B2531ECK2527:JW2514:B2530ECK2526:JW2513:B2529ECK2521:JW2508:B2524ECK2525:JW2512:B2528ECK2524:JW2511:B2527ECK2523:JW2510:B2526ECK2522:JW2509:B2525ECK2530:JW2517:B2533ECK2512:JW2500:B2516
ECOL199310 C3058C3057C3056C3055C3049C3053C3052C3051C3050C3059C3038
ECAR218491 ECA3239ECA3238ECA3237ECA3236ECA3231ECA3235ECA3234ECA3233ECA3232ECA3240ECA3221
DARO159087 DARO_1682DARO_1948DARO_1950DARO_1951DARO_1956DARO_1952DARO_1953DARO_1954DARO_1955DARO_1681DARO_2986
CVIO243365 CV_3645CV_1095CV_1094CV_1093CV_1087CV_1092CV_1091CV_1089CV_1088CV_3644CV_3539
CVES412965 COSY_0453COSY_0533COSY_0532COSY_0531COSY_0472COSY_0530COSY_0529COSY_0528COSY_0527COSY_0452
CRUT413404 RMAG_0492RMAG_0578RMAG_0577RMAG_0576RMAG_0514RMAG_0575RMAG_0574RMAG_0573RMAG_0572RMAG_0491
CPSY167879 CPS_1129CPS_1131CPS_1132CPS_1133CPS_4263CPS_1134CPS_1135CPS_1136CPS_1137CPS_1128CPS_4253
BVIE269482 BCEP1808_1986BCEP1808_2206BCEP1808_2205BCEP1808_5992BCEP1808_2199BCEP1808_2203BCEP1808_2202BCEP1808_2201BCEP1808_2200BCEP1808_1987BCEP1808_1740
BTHA271848 BTH_I1935BTH_I1874BTH_I1875BTH_I1876BTH_I1881BTH_I1877BTH_I1878BTH_I1879BTH_I1880BTH_I1934
BSP36773 BCEP18194_A5390BCEP18194_A5433BCEP18194_B2412BCEP18194_A5431BCEP18194_A5426BCEP18194_A5430BCEP18194_A5429BCEP18194_A5428BCEP18194_A5427BCEP18194_A5391BCEP18194_A5114
BPSE320373 BURPS668_2552BURPS668_2600BURPS668_2599BURPS668_2598BURPS668_2593BURPS668_2597BURPS668_2596BURPS668_2595BURPS668_2594BURPS668_2553
BPSE320372 BURPS1710B_A2920BURPS1710B_A2966BURPS1710B_A2965BURPS1710B_A2964BURPS1710B_A2959BURPS1710B_A2963BURPS1710B_A2962BURPS1710B_A2961BURPS1710B_A2960BURPS1710B_A2921
BPSE272560 BPSL2249BPSL2290BPSL2289BPSL2288BPSL2283BPSL2287BPSL2286BPSL2285BPSL2284BPSL2250
BPET94624 BPET3458BPET2778BPET2777BPET2776BPET2771BPET2775BPET2774BPET2773BPET2772BPET3457
BPER257313 BP1901BP1798BP1799BP1800BP1805BP1801BP1802BP1803BP1804BP1902
BPAR257311 BPP2276BPP2027BPP2028BPP2029BPP2034BPP2030BPP2031BPP2032BPP3861BPP2277
BMAL320389 BMA10247_1440BMA10247_1490BMA10247_1489BMA10247_1488BMA10247_1483BMA10247_1487BMA10247_1486BMA10247_1485BMA10247_1484BMA10247_1441
BMAL320388 BMASAVP1_A2167BMASAVP1_A2218BMASAVP1_A2217BMASAVP1_A2216BMASAVP1_A2211BMASAVP1_A2215BMASAVP1_A2214BMASAVP1_A2213BMASAVP1_A2212BMASAVP1_A2168
BMAL243160 BMA_1663BMA_1709BMA_1708BMA_1707BMA_1702BMA_1706BMA_1705BMA_1704BMA_1703BMA_1664
BCEN331272 BCEN2424_2084BCEN2424_2127BCEN2424_2126BCEN2424_2125BCEN2424_2120BCEN2424_2124BCEN2424_2123BCEN2424_2122BCEN2424_2121BCEN2424_2085BCEN2424_1813
BCEN331271 BCEN_5993BCEN_5950BCEN_5951BCEN_5952BCEN_5957BCEN_5953BCEN_5954BCEN_5955BCEN_5956BCEN_5992BCEN_6266
BBRO257310 BB1728BB2275BB2276BB2277BB2282BB2278BB2279BB2280BB2281BB1729
BAMB398577 BAMMC406_1989BAMMC406_2037BAMMC406_2036BAMMC406_2035BAMMC406_2030BAMMC406_2034BAMMC406_2033BAMMC406_2032BAMMC406_2031BAMMC406_1990BAMMC406_1724
BAMB339670 BAMB_2119BAMB_2164BAMB_2163BAMB_2162BAMB_2157BAMB_2161BAMB_2160BAMB_2159BAMB_2158BAMB_2120BAMB_1751
ASP76114 EBA6408EBA6404EBA6401EBA6400EBA6395EBB230EBA6397EBA6396EBB229EBA6410EBA1262
ASP62977 ACIAD2090ACIAD1405ACIAD1404ACIAD1403ACIAD0555ACIAD1402ACIAD1400ACIAD1399ACIAD1398ACIAD3246ACIAD0560
ASP62928 AZO2020AZO2018AZO2016AZO2015AZO2010AZO2014AZO2013AZO2012AZO2011AZO2021AZO0926
ASP232721 AJS_1046AJS_2145AJS_2144AJS_2143AJS_2142AJS_2141AJS_2140AJS_2139AJS_1045
ASAL382245 ASA_2614ASA_2613ASA_2612ASA_2611ASA_2610ASA_2608ASA_2607ASA_2606ASA_2649ASA_2600
APLE434271 APJL_0851APJL_0942APJL_0941APJL_0940APJL_0933APJL_0939APJL_0938APJL_0935APJL_0934APJL_0207APJL_1199
APLE416269 APL_0843APL_0932APL_0931APL_0930APL_0923APL_0929APL_0928APL_0925APL_0924APL_0206APL_1177
AHYD196024 AHA_1745AHA_1746AHA_1747AHA_1748AHA_1749AHA_1750AHA_1751AHA_1752AHA_1710AHA_1758
AFER243159 AFE_2370AFE_2368AFE_2367AFE_2366AFE_2361AFE_2365AFE_2364AFE_2363AFE_2362AFE_2371AFE_1158
ADEH290397 ADEH_1113ADEH_0592ADEH_0593ADEH_0599ADEH_0594ADEH_0595ADEH_0597ADEH_0598ADEH_3387
ABAU360910 BAV2569BAV1507BAV1508BAV1509BAV1514BAV1510BAV1511BAV1512BAV1513BAV2568
ABAC204669 ACID345_2117ACID345_0485ACID345_0484ACID345_0483ACID345_0478ACID345_1581ACID345_0481ACID345_0480ACID345_0479ACID345_2060
AAVE397945 AAVE_2075AAVE_2442AAVE_2443AAVE_2444AAVE_2445AAVE_2446AAVE_2447AAVE_2448AAVE_2070AAVE_1423


Organism features enriched in list (features available for 140 out of the 146 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00097081192
Arrangment:Pairs 0.000149042112
Disease:Bubonic_plague 0.000176566
Disease:Dysentery 0.000176566
Disease:Gastroenteritis 0.00006541013
Disease:Meningitis_and_septicemia 0.003217744
Endospores:No 1.302e-628211
Endospores:Yes 4.058e-6153
GC_Content_Range4:0-40 1.917e-1910213
GC_Content_Range4:40-60 4.893e-1085224
GC_Content_Range4:60-100 0.006941445145
GC_Content_Range7:30-40 2.295e-1210166
GC_Content_Range7:50-60 2.037e-849107
GC_Content_Range7:60-70 0.002532144134
Genome_Size_Range5:0-2 1.719e-146155
Genome_Size_Range5:2-4 3.853e-822197
Genome_Size_Range5:4-6 1.432e-2090184
Genome_Size_Range5:6-10 0.00021442247
Genome_Size_Range9:0-1 0.0044828127
Genome_Size_Range9:1-2 1.070e-115128
Genome_Size_Range9:2-3 0.000628616120
Genome_Size_Range9:3-4 0.0000704677
Genome_Size_Range9:4-5 1.077e-84696
Genome_Size_Range9:5-6 4.586e-94488
Genome_Size_Range9:6-8 0.00001372138
Gram_Stain:Gram_Neg 6.533e-24128333
Habitat:Multiple 0.003214555178
Habitat:Specialized 0.0089323653
Motility:No 2.530e-813151
Motility:Yes 2.415e-790267
Optimal_temp.:35-37 5.688e-91313
Oxygen_Req:Anaerobic 2.327e-85102
Oxygen_Req:Facultative 2.721e-1283201
Pathogenic_in:Human 0.000992166213
Pathogenic_in:No 0.000040435226
Shape:Coccus 0.0002963882
Shape:Rod 6.042e-11115347
Shape:Spiral 0.0007440134
Temp._range:Mesophilic 0.0030590124473
Temp._range:Psychrophilic 0.000065689
Temp._range:Thermophilic 0.0005720135



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ORGANISMS CONTAINING AT MOST 2 GENES FROM THE GROUP:

Total number of orgs: 187
Effective number of orgs (counting one per cluster within 468 clusters): 147

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB42
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.2
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332232
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 52
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO2
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TDEN243275 ncbi Treponema denticola ATCC 354052
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4402
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP387093 ncbi Sulfurovum sp. NBC37-12
SSOL273057 ncbi Sulfolobus solfataricus P21
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F11
SGOR29390 Streptococcus gordonii Challis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RALB246199 Ruminococcus albus 82
PTOR263820 ncbi Picrophilus torridus DSM 97901
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ952
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85032
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
NSP387092 ncbi Nitratiruptor sp. SB155-22
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSP189918 ncbi Mycobacterium sp. KMS2
MSP164757 ncbi Mycobacterium sp. JLS2
MSP164756 ncbi Mycobacterium sp. MCS2
MSME246196 ncbi Mycobacterium smegmatis MC2 1552
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62422
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1972
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5502
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HSP64091 ncbi Halobacterium sp. NRC-12
HSAL478009 ncbi Halobacterium salinarum R12
HPYL85963 ncbi Helicobacter pylori J992
HPYL357544 ncbi Helicobacter pylori HPAG12
HPY ncbi Helicobacter pylori 266952
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba2
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
EFAE226185 ncbi Enterococcus faecalis V5831
DSP216389 ncbi Dehalococcoides sp. BAV12
DGEO319795 ncbi Deinococcus geothermalis DSM 113002
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE252
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3822
CMIC31964 ncbi Clavibacter michiganensis sepedonicus2
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF82
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3812
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130322
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3142
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131292
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C2
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD32
CCAV227941 ncbi Chlamydophila caviae GPIC1
CACE272562 ncbi Clostridium acetobutylicum ATCC 8242
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1351
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K11
ANAE240017 Actinomyces oris MG10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
ACEL351607 ncbi Acidothermus cellulolyticus 11B2
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7327   G7326   G7325   G7324   EG12311   EG12132   EG12131   EG12130   EG11328   EG10983   EG10015   
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116 TVN0579
TTEN273068 TTE1242TTE2465
TSP28240 TRQ2_1308
TSP1755 TETH514_1485TETH514_1164
TPSE340099 TETH39_1048TETH39_0797
TPET390874 TPET_1378
TPEN368408 TPEN_0545TPEN_1384
TPAL243276
TMAR243274 TM_1415
TLET416591 TLET_0717TLET_2048
TKOD69014 TK1970
TDEN243275 TDE_2084TDE_2053
TACI273075 TA1010
SWOL335541 SWOL_0490
STRO369723 STROP_3078STROP_1476
STOK273063 ST0454
STHE322159
STHE299768
STHE264199 STU0167
SSUI391296
SSUI391295
SSP387093 SUN_0006SUN_1872
SSOL273057 SSO0747
SPYO370554 MGAS10750_SPY0242
SPYO370553 MGAS2096_SPY0264
SPYO370552 MGAS10270_SPY0245
SPYO370551 MGAS9429_SPY0247
SPYO319701 M28_SPY0240
SPYO293653 M5005_SPY0245
SPYO286636 M6_SPY0276
SPYO198466 SPYM3_0211
SPYO193567 SPS0217
SPYO186103 SPYM18_0277
SPYO160490 SPY0289
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550 SMAR_0780
SGOR29390 SGO_1719
SERY405948 SACE_1803
SARE391037 SARE_1441
SAGA211110
SAGA208435
SAGA205921
SACI330779 SACI_0621
RSAL288705 RSAL33209_1585
RALB246199 GRAORF_4622GRAORF_3526
PTOR263820 PTO0329
PRUM264731 GFRORF1146
PPEN278197
PMOB403833 PMOB_1717PMOB_1798
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591 BDI_1997BDI_2667
PAST100379
PARS340102
PAER178306
PACN267747 PPA0700
PABY272844
NSP387092 NIS_1121NIS_1712
MTUB419947 MRA_1295
MTUB336982 TBFG_11313
MTHE187420 MTH1849
MTBRV RV1287
MTBCDC MT1325
MSYN262723
MSP189918 MKMS_3989MKMS_3279
MSP164757 MJLS_3930MJLS_3228
MSP164756 MMCS_3915MMCS_3217
MSME246196 MSMEG_4974MSMEG_4272
MSED399549 MSED_0066
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR444158 MMARC6_0618
MMAR426368 MMARC7_1335
MMAR402880 MMARC5_1340
MMAR267377 MMP0334
MLEP272631
MKAN190192 MK0519
MJAN243232 MJ_1476
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_2433MBUR_0288
MBOV410289 BCG_1346
MBOV233413 MB1318
MAVI243243 MAV_3314
MART243272
MAEO419665 MAEO_0071
LXYL281090 LXX15060
LSAK314315
LREU557436
LPLA220668 LP_2304
LMES203120
LLAC272623
LLAC272622
LJOH257314
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277 LBJ_0433LBJ_0165
LBOR355276 LBL_2644LBL_2918
LACI272621
KRAD266940 KRAD_1553
IHOS453591 IGNI_0127
HSP64091 VNG1347CVNG2472G
HSAL478009 OE2923FOE4465F
HPYL85963 JHP0206JHP0207
HPYL357544 HPAG1_0222HPAG1_0223
HPY HP0220HP0221
HBUT415426 HBUT_1655
HACI382638 HAC_1498HAC_1497
FNOD381764 FNOD_1771
FMAG334413 FMG_0624
EFAE226185 EF_2391
DSP216389 DEHABAV1_1341DEHABAV1_0835
DGEO319795 DGEO_1990DGEO_0499
CTRA471473
CTRA471472
CSUL444179
CPRO264201 PC1085PC1576
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMUR243161
CMIC443906 CMM_1843CMM_2799
CMIC31964 CMS1389CMS3003
CMAQ397948
CKOR374847 KCR_0119KCR_0890
CJEJ407148 C8J_0217
CJEJ360109 JJD26997_0237
CJEJ354242 CJJ81176_0264
CJEJ195099 CJE_0290
CJEJ192222 CJ0239C
CJEI306537
CHOM360107 CHAB381_0890CHAB381_0043
CGLU196627 CG1760CG0640
CFET360106 CFF8240_1697
CFEL264202
CEFF196164 CE1682CE0558
CDIP257309 DIP1291DIP1631
CDES477974 DAUD_1557DAUD_0907
CCUR360105 CCV52592_1771
CCON360104 CCC13826_1162
CCHL340177 CAG_0207CAG_0161
CCAV227941 CCA_00215
CACE272562 CAC1675CAC2234
CABO218497
BTUR314724 BT0518
BTHE226186 BT_2801
BLON206672
BHER314723 BH0518
BGAR290434 BG0529
BFRA295405 BF4389
BFRA272559 BF4187
BBUR224326 BB_0518
BAFZ390236 BAPKO_0545
AYEL322098
AURANTIMONAS
ASP1667 ARTH_1998
APER272557 APE0555
ANAE240017
ALAI441768 ACL_1214
ACEL351607 ACEL_0954ACEL_1405
AAUR290340 AAUR_1435


Organism features enriched in list (features available for 175 out of the 187 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00001594592
Arrangment:Pairs 0.007734724112
Disease:Pharyngitis 0.000058888
Disease:Wide_range_of_infections 1.422e-61111
Disease:bronchitis_and_pneumonitis 0.000058888
Endospores:No 2.827e-25119211
Endospores:Yes 0.0005806653
GC_Content_Range4:0-40 9.448e-892213
GC_Content_Range4:40-60 0.005532355224
GC_Content_Range4:60-100 0.000350928145
GC_Content_Range7:30-40 2.451e-673166
GC_Content_Range7:50-60 1.404e-613107
GC_Content_Range7:60-70 0.000145324134
Genome_Size_Range5:0-2 1.359e-2498155
Genome_Size_Range5:4-6 2.016e-1517184
Genome_Size_Range5:6-10 0.0002049447
Genome_Size_Range9:0-1 1.458e-62027
Genome_Size_Range9:1-2 6.856e-1778128
Genome_Size_Range9:3-4 0.00098061277
Genome_Size_Range9:4-5 1.362e-7996
Genome_Size_Range9:5-6 3.594e-7888
Genome_Size_Range9:6-8 0.0006438338
Gram_Stain:Gram_Neg 5.324e-1459333
Gram_Stain:Gram_Pos 9.775e-1075150
Habitat:Host-associated 0.000119481206
Habitat:Multiple 0.001315739178
Habitat:Specialized 0.00015442853
Habitat:Terrestrial 0.0010826231
Motility:No 1.494e-975151
Motility:Yes 9.706e-657267
Optimal_temp.:- 0.000081357257
Optimal_temp.:30-35 0.003407167
Optimal_temp.:37 0.000099148106
Optimal_temp.:85 0.007924444
Oxygen_Req:Aerobic 0.000097437185
Oxygen_Req:Anaerobic 0.000069947102
Oxygen_Req:Microaerophilic 0.00418901118
Pathogenic_in:Animal 0.0006554966
Pathogenic_in:Swine 0.002340455
Salinity:Non-halophilic 0.000220547106
Shape:Coccus 2.528e-64382
Shape:Irregular_coccus 0.00046671217
Shape:Rod 2.203e-972347
Shape:Sphere 9.620e-61519
Shape:Spiral 0.00001372234
Temp._range:Hyperthermophilic 1.067e-82023
Temp._range:Mesophilic 0.0068091132473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 33
Effective number of orgs (counting one per cluster within 468 clusters): 25

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA 0.000037573210
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica) 0.000051075510
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas 0.00006343578
RAKA293614 ncbi Rickettsia akari Hartford 0.00021094168
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith 0.00021094168
RRIC452659 ncbi Rickettsia rickettsii Iowa 0.00024484248
RCON272944 ncbi Rickettsia conorii Malish 7 0.00027834318
RMAS416276 ncbi Rickettsia massiliae MTU5 0.00033294418
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 23270 0.0003601129911
RBEL391896 ncbi Rickettsia bellii OSU 85-389 0.00048694638
HDUC233412 ncbi Haemophilus ducreyi 35000HP 0.0005785135611
RFEL315456 ncbi Rickettsia felis URRWXCal2 0.00064484808
RBEL336407 ncbi Rickettsia bellii RML369-C 0.00068794848
APHA212042 ncbi Anaplasma phagocytophilum HZ 0.00086313287
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden 0.00103833377
ERUM302409 ncbi Ehrlichia ruminantium Gardel 0.00110303407
AMAR234826 ncbi Anaplasma marginale St. Maries 0.00121853457
ECAN269484 ncbi Ehrlichia canis Jake 0.00150893567
PSP56811 Psychrobacter sp. 0.0016132148811
MFLA265072 ncbi Methylobacillus flagellatus KT 0.0017888150211
TDEN292415 ncbi Thiobacillus denitrificans ATCC 25259 0.0018421150611
MCAP243233 ncbi Methylococcus capsulatus Bath 0.0018830150911
HINF281310 ncbi Haemophilus influenzae 86-028NP 0.0031058157911
NSEN222891 ncbi Neorickettsia sennetsu Miyayama 0.00332492506
RCAN293613 ncbi Rickettsia canadensis McKiel 0.00361904057
HINF71421 ncbi Haemophilus influenzae Rd KW20 0.0036937160411
NGON242231 ncbi Neisseria gonorrhoeae FA 1090 0.0044800119010
NMEN374833 ncbi Neisseria meningitidis 053442 0.0055762121710
NMEN122586 ncbi Neisseria meningitidis MC58 0.0060876122810
NMEN272831 ncbi Neisseria meningitidis FAM18 0.0064344123510
NMEN122587 ncbi Neisseria meningitidis Z2491 0.0071813124910
ASP76114 ncbi Aromatoleum aromaticum EbN1 0.0075805171211
ASP62977 ncbi Acinetobacter sp. ADP1 0.0082931172611


Names of the homologs of the genes in the group in each of these orgs
  G7327   G7326   G7325   G7324   EG12311   EG12132   EG12131   EG12130   EG11328   EG10983   EG10015   
CVES412965 COSY_0453COSY_0533COSY_0532COSY_0531COSY_0472COSY_0530COSY_0529COSY_0528COSY_0527COSY_0452
CRUT413404 RMAG_0492RMAG_0578RMAG_0577RMAG_0576RMAG_0514RMAG_0575RMAG_0574RMAG_0573RMAG_0572RMAG_0491
ECHA205920 ECH_0628ECH_0629ECH_0630ECH_0908ECH_0631ECH_0632ECH_0633ECH_0634
RAKA293614 A1C_00885A1C_03970A1C_03960A1C_03955A1C_03950A1C_01480A1C_01330A1C_01470
RRIC392021 A1G_00920A1G_04135A1G_04125A1G_04120A1G_04115A1G_01505A1G_01335A1G_01495
RRIC452659 RRIOWA_0200RRIOWA_0870RRIOWA_0868RRIOWA_0867RRIOWA_0866RRIOWA_0320RRIOWA_0288RRIOWA_0318
RCON272944 RC0160RC0732RC0730RC0729RC0728RC0263RC0233RC0261
RMAS416276 RMA_0167RMA_0825RMA_0823RMA_0822RMA_0821RMA_0271RMA_0246RMA_0269
AFER243159 AFE_2370AFE_2368AFE_2367AFE_2366AFE_2361AFE_2365AFE_2364AFE_2363AFE_2362AFE_2371AFE_1158
RBEL391896 A1I_01395A1I_03920A1I_03930A1I_03935A1I_03940A1I_02940A1I_01755A1I_02955
HDUC233412 HD_1664HD_1080HD_1082HD_1083HD_1089HD_1084HD_1085HD_1087HD_1088HD_0440HD_1036
RFEL315456 RF_1172RF_0847RF_0845RF_0844RF_0843RF_1062RF_1084RF_1064
RBEL336407 RBE_1177RBE_0949RBE_0947RBE_0946RBE_0945RBE_0512RBE_1113RBE_0514
APHA212042 APH_0674APH_0675APH_0977APH_0676APH_0677APH_0346APH_0679
ERUM254945 ERWE_CDS_04280ERWE_CDS_04310ERWE_CDS_04320ERWE_CDS_01970ERWE_CDS_04340ERWE_CDS_05770ERWE_CDS_04360
ERUM302409 ERGA_CDS_04240ERGA_CDS_04250ERGA_CDS_04260ERGA_CDS_01920ERGA_CDS_04280ERGA_CDS_05670ERGA_CDS_04300
AMAR234826 AM656AM655AM654AM299AM652AM842AM650
ECAN269484 ECAJ_0411ECAJ_0410ECAJ_0409ECAJ_0197ECAJ_0407ECAJ_0406ECAJ_0405
PSP56811 PSYCPRWF_1243PSYCPRWF_1628PSYCPRWF_1629PSYCPRWF_1630PSYCPRWF_0641PSYCPRWF_1631PSYCPRWF_1632PSYCPRWF_1633PSYCPRWF_1634PSYCPRWF_0412PSYCPRWF_1903
MFLA265072 MFLA_0812MFLA_0810MFLA_0808MFLA_0807MFLA_1920MFLA_0806MFLA_0805MFLA_0804MFLA_0803MFLA_0813MFLA_1621
TDEN292415 TBD_1161TBD_1163TBD_1164TBD_1165TBD_1170TBD_1166TBD_1167TBD_1168TBD_1169TBD_1160TBD_0593
MCAP243233 MCA_2610MCA_2883MCA_0247MCA_0248MCA_2825MCA_0250MCA_0251MCA_0252MCA_0253MCA_2609MCA_1363
HINF281310 NTHI0500NTHI0499NTHI0498NTHI0497NTHI0491NTHI0496NTHI0495NTHI0493NTHI0492NTHI1108NTHI0487
NSEN222891 NSE_0304NSE_0303NSE_0302NSE_0581NSE_0299NSE_0297
RCAN293613 A1E_00605A1E_02335A1E_02340A1E_02345A1E_01045A1E_00900A1E_01035
HINF71421 HI_0380HI_0379HI_0378HI_0377HI_0371HI_0376HI_0375HI_0373HI_0372HI_0937HI_0367
NGON242231 NGO0670NGO0637NGO0636NGO0633NGO0823NGO0632NGO0630NGO0829NGO0825NGO0671
NMEN374833 NMCC_1260NMCC_1291NMCC_1293NMCC_1295NMCC_1056NMCC_1296NMCC_1297NMCC_1050NMCC_1054NMCC_1259
NMEN122586 NMB_1348NMB_1378NMB_1379NMB_1380NMB_1175NMB_1381NMB_1383NMB_1169NMB_1172NMB_1347
NMEN272831 NMC1284NMC1314NMC1315NMC1317NMC1076NMC1318NMC1319NMC1070NMC1073NMC1283
NMEN122587 NMA1560NMA1593NMA1594NMA1596NMA1347NMA1597NMA1598NMA1340NMA1344NMA1559
ASP76114 EBA6408EBA6404EBA6401EBA6400EBA6395EBB230EBA6397EBA6396EBB229EBA6410EBA1262
ASP62977 ACIAD2090ACIAD1405ACIAD1404ACIAD1403ACIAD0555ACIAD1402ACIAD1400ACIAD1399ACIAD1398ACIAD3246ACIAD0560


Organism features enriched in list (features available for 32 out of the 33 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Singles 0.00739029286
Disease:Meningitis_and_septicemia 7.548e-644
Disease:Rocky_Mountain_Spotted_Fever 0.000151033
Disease:chronic_bronchitis 0.008318023
Disease:speticemia 0.002923622
Endospores:No 0.00006482211
GC_Content_Range4:0-40 0.009660618213
Genome_Size_Range5:0-2 1.803e-621155
Genome_Size_Range5:4-6 0.00005701184
Genome_Size_Range9:1-2 2.096e-619128
Gram_Stain:Gram_Neg 0.002197726333
Habitat:Host-associated 0.000013623206
Motility:No 0.00348642151
Motility:Yes 0.00003834267
Optimal_temp.:35-37 1.009e-6713
Oxygen_Req:Facultative 0.00955545201
Pathogenic_in:Human 0.009660618213
Pathogenic_in:No 0.00779806226
Pathogenic_in:Ruminant 0.008318023
Shape:Pleomorphic_coccus 0.002923622



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181350.6667
AST-PWY (arginine degradation II (AST pathway))120910.6042
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761120.5955
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911130.5608
GLYCOCAT-PWY (glycogen degradation I)2461290.5531
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001430.5513
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951100.5255
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251180.5149
PWY-1269 (CMP-KDO biosynthesis I)3251440.5146
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81640.5072
GALACTITOLCAT-PWY (galactitol degradation)73600.5053
PWY-5913 (TCA cycle variation IV)3011370.5040
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149910.4982
PWY-5386 (methylglyoxal degradation I)3051370.4967
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911320.4846
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961330.4829
GLUCONSUPER-PWY (D-gluconate degradation)2291150.4820
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901310.4789
PWY-4041 (γ-glutamyl cycle)2791280.4772
PWY-5918 (heme biosynthesis I)2721260.4757
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831000.4752
LIPASYN-PWY (phospholipases)2121090.4744
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491190.4692
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491190.4692
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481430.4689
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861280.4637
GLUCARDEG-PWY (D-glucarate degradation I)152880.4621
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911000.4540
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391390.4531
PWY-6196 (serine racemization)102680.4516
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50440.4503
PWY-5148 (acyl-CoA hydrolysis)2271100.4473
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91630.4471
PWY0-981 (taurine degradation IV)106690.4453
DAPLYSINESYN-PWY (lysine biosynthesis I)3421380.4406
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301100.4405
GLUTDEG-PWY (glutamate degradation II)194990.4381
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121040.4344
PWY-3162 (tryptophan degradation V (side chain pathway))94630.4337
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291340.4319
P601-PWY (D-camphor degradation)95630.4294
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135780.4264
TYRFUMCAT-PWY (tyrosine degradation I)184940.4226
PWY-46 (putrescine biosynthesis III)138780.4167
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551130.4103
REDCITCYC (TCA cycle variation II)174890.4073
GLYOXYLATE-BYPASS (glyoxylate cycle)169870.4039
GALACTARDEG-PWY (D-galactarate degradation I)151810.4034
PWY0-1182 (trehalose degradation II (trehalase))70500.4031



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7326   G7325   G7324   EG12311   EG12132   EG12131   EG12130   EG11328   EG10983   EG10015   
G73270.9995820.9994790.9993290.9992110.999390.9993990.9991450.9993390.9997540.998873
G73260.999920.9997930.9994360.9997580.9997120.9995860.9996080.9993740.998853
G73250.9999310.9994430.9998030.9997540.9996560.9996730.9993430.998958
G73240.9994760.9998450.9997890.9996820.9996860.9991840.998506
EG123110.9995130.9995590.999610.9996730.9991420.998848
EG121320.9998260.9996660.9996760.9989730.998909
EG121310.999830.9998180.9992840.998703
EG121300.9997950.9990920.998624
EG113280.9989610.998722
EG109830.998632
EG10015



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PAIRWISE BLAST SCORES:

  G7327   G7326   G7325   G7324   EG12311   EG12132   EG12131   EG12130   EG11328   EG10983   EG10015   
G73270.0f0----------
G7326-0.0f0---------
G7325--0.0f0--------
G7324---0.0f0-------
EG12311----0.0f0------
EG12132-----0.0f0-----
EG12131------0.0f0----
EG12130-------0.0f0---
EG11328--------0.0f0--
EG10983---------0.0f0-
EG10015----------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10983 EG11328 EG12130 EG12131 EG12132 EG12311 G7324 G7325 G7326 G7327 (centered at G7324)
EG10015 (centered at EG10015)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7327   G7326   G7325   G7324   EG12311   EG12132   EG12131   EG12130   EG11328   EG10983   EG10015   
338/623337/623326/623366/623140/623316/623170/623308/623266/623376/623163/623
AAEO224324:0:Tyes--0106-----882-
AAUR290340:2:Tyes---------0-
AAVE397945:0:Tyes643100310041005-10061007100810096380
ABAC204669:0:Tyes1652765011093211594-
ABAU360910:0:Tyes1064012734561063-
ABOR393595:0:Tyes32317101709--1706-11403221698
ABUT367737:0:Tyes-1723167168-----0-
ACAU438753:0:Tyes1390----2339-19829610-
ACEL351607:0:Tyes-----0---450-
ACRY349163:8:Tyes390----1257-6327536950
ADEH290397:0:Tyes523-01723562823-
AEHR187272:0:Tyes61612530--618-1266-615622
AFER243159:0:Tyes11961194119311921187119111901189118811970
AFUL224325:0:Tyes1595-0369-------
AHYD196024:0:Tyes35363738-39404142048
ALAI441768:0:Tyes---0-------
AMAR234826:0:Tyes-2622612600-259388257--
AMAR329726:9:Tyes01500852--3904--26442168-
AMET293826:0:Tyes-012-------
AORE350688:0:Tyes-210-------
APER272557:0:Tyes0----------
APHA212042:0:Tyes--3103116003123130315--
APLE416269:0:Tyes6397307297287217277267237220972
APLE434271:0:Tno6137067057046977037026996980965
ASAL382245:5:Tyes13121110-9765470
ASP1667:3:Tyes--------0--
ASP232721:2:Tyes1105410531052-10511050104910480-
ASP62928:0:Tyes11231121111911181113111711161115111411240
ASP62977:0:Tyes1456819818817081681581481325164
ASP76114:2:Tyes30363034303230313026303030293028302730370
AVAR240292:3:Tyes975269703491-3515-485-550-
BABO262698:0:Tno-0---------
BABO262698:1:Tno233----0-111272723-
BAFZ390236:2:Fyes-------0---
BAMB339670:3:Tno3804254244234184224214204193810
BAMB398577:3:Tno2723203193183133173163153142730
BAMY326423:0:Tyes-1009-1522-1473---0-
BANT260799:0:Tno-168116802258----0--
BANT261594:2:Tno-169316922244----0--
BANT568206:2:Tyes-277927783353----0--
BANT592021:2:Tno-177517742347----0--
BAPH198804:0:Tyes--455456-0457458459154-
BAPH372461:0:Tyes--213214--215-2170-
BBAC264462:0:Tyes2184-1--0--24531997-
BBAC360095:0:Tyes620----552-1083-0-
BBRO257310:0:Tyes05615625635685645655665671-
BBUR224326:21:Fno-------0---
BCAN483179:0:Tno-0---------
BCAN483179:1:Tno262----0-117885768-
BCEN331271:0:Tno430127345642327
BCEN331272:3:Tyes2713143133123073113103093082720
BCER226900:1:Tyes-1559-2131----01130-
BCER288681:0:Tno-161216112195----01190-
BCER315749:1:Tyes-440439883-----0-
BCER405917:1:Tyes-158015792190----01123-
BCER572264:1:Tno-161316122184----0--
BCIC186490:0:Tyes--1--421---0-
BCLA66692:0:Tyes-1283-2691----02108-
BFRA272559:1:Tyes---------0-
BFRA295405:0:Tno---------0-
BGAR290434:2:Fyes-------0---
BHAL272558:0:Tyes-012228-----1380-
BHEN283166:0:Tyes730----875-0-1322-
BHER314723:0:Fyes-------0---
BJAP224911:0:Fyes5106----4105-05245850-
BLIC279010:0:Tyes-116011591704-----0-
BMAL243160:1:Tno041403934383736351-
BMAL320388:1:Tno049484742464544431-
BMAL320389:1:Tyes048474641454443421-
BMEL224914:0:Tno-0---------
BMEL224914:1:Tno485----731-17126530-
BMEL359391:1:Tno223----0-106970692-
BOVI236:0:Tyes-0---------
BOVI236:1:Tyes201----0-98555635-
BPAR257311:0:Tno23901273451759240-
BPER257313:0:Tyes830127345684-
BPET94624:0:Tyes70776504321706-
BPSE272560:1:Tyes040393833373635341-
BPSE320372:1:Tno046454439434241401-
BPSE320373:1:Tno047464540444342411-
BPUM315750:0:Tyes-101410131559-1512---0-
BQUI283165:0:Tyes499----634-0-989-
BSP107806:2:Tyes--313314--3153163170-
BSP36773:1:Tyes--0--------
BSP36773:2:Tyes288331-3293243283273263252890
BSP376:0:Tyes2443----4983-04657894-
BSUB:0:Tyes-133213311890-1836---0-
BSUI204722:0:Tyes-0---------
BSUI204722:1:Tyes252----0-114785748-
BSUI470137:0:Tno-157-------0-
BSUI470137:1:Tno259----0-95989--
BTHA271848:1:Tno610127345660-
BTHE226186:0:Tyes---------0-
BTHU281309:1:Tno-156915682120----01143-
BTHU412694:1:Tno-140714061938----0--
BTRI382640:1:Tyes962----1166-0-1833-
BTUR314724:0:Fyes-------0---
BVIE269482:5:Tyes---0-------
BVIE269482:7:Tyes245464463-4574614604594582460
BWEI315730:4:Tyes-160816072182----01156-
BXEN266265:1:Tyes--01-3-45--
CACE272562:1:Tyes-0550--------
CAULO:0:Tyes25471879---1871-035663305-
CBEI290402:0:Tyes-64001-------
CBLO203907:0:Tyes--415--241-0-416-
CBLO291272:0:Tno--430--247-0-431-
CBOT36826:1:Tno-013701369-------
CBOT441770:0:Tyes-012731272-------
CBOT441771:0:Tno-011921191-------
CBOT441772:1:Tno-013411340-------
CBOT498213:1:Tno-013781377-------
CBOT508765:1:Tyes-012-------
CBOT515621:2:Tyes-015541553-------
CBOT536232:0:Tno-014971496-------
CBUR227377:1:Tyes3-10---155-5117
CBUR360115:1:Tno3-10---152-4108
CBUR434922:2:Tno3-10---146-4101
CCAV227941:1:Tyes0----------
CCHL340177:0:Tyes---46-----0-
CCON360104:2:Tyes---0-------
CCUR360105:0:Tyes---0-------
CDES477974:0:Tyes-6610--------
CDIF272563:1:Tyes-012-------
CDIP257309:0:Tyes---0-338-----
CEFF196164:0:Fyes---1145----0--
CFET360106:0:Tyes---0-------
CGLU196627:0:Tyes---1019----0--
CHOM360107:1:Tyes-826-0-------
CHUT269798:0:Tyes-0---2289---3011-
CHYD246194:0:Tyes-210-------
CJAP155077:0:Tyes123--8---017
CJEJ192222:0:Tyes---0-------
CJEJ195099:0:Tno---0-------
CJEJ354242:2:Tyes---0-------
CJEJ360109:0:Tyes---0-------
CJEJ407148:0:Tno---0-------
CKLU431943:1:Tyes-2300232-------
CKOR374847:0:Tyes0--758-------
CMET456442:0:Tyes517-01801-------
CMIC31964:2:Tyes-----0---1535-
CMIC443906:2:Tyes-----0---974-
CNOV386415:0:Tyes-210-------
CPEL335992:0:Tyes786377-382-384-0267221-
CPER195102:1:Tyes-210-------
CPER195103:0:Tno-210-------
CPER289380:3:Tyes-210-------
CPHY357809:0:Tyes-010741073-------
CPRO264201:0:Fyes-----0---498-
CPSY167879:0:Tyes13453043678903033
CRUT413404:0:Tyes183828121807978770-
CSAL290398:0:Tyes35110381039--1040-1288-01044
CSP501479:7:Fyes-------0---
CSP501479:8:Fyes6371301---622--1120-
CSP78:2:Tyes35412590---2599-04868739-
CTEP194439:0:Tyes--13331332---0-1004-
CTET212717:0:Tyes-012-------
CVES412965:0:Tyes180797820777675740-
CVIO243365:0:Tyes26308760542126292520
DARO159087:0:Tyes127127327427927527627727801309
DDES207559:0:Tyes331024762475---383-1369-
DETH243164:0:Tyes--0680---1111---
DGEO319795:1:Tyes14830---------
DHAF138119:0:Tyes-210-------
DNOD246195:0:Tyes---308---301-2790
DOLE96561:0:Tyes265122842268771---67-0-
DPSY177439:2:Tyes--597598---0---
DRAD243230:3:Tyes1371628---0--1609--
DRED349161:0:Tyes-012---1736---
DSHI398580:5:Tyes318439---1169-239415520-
DSP216389:0:Tyes-523-0-------
DSP255470:0:Tno-12440571-------
DVUL882:1:Tyes21960134135-----1146-
ECAN269484:0:Tyes-2202192180-216215214--
ECAR218491:0:Tyes181716151014131211190
ECHA205920:0:Tyes-0122623456--
ECOL199310:0:Tno201918171115141312210
ECOL316407:0:Tno17161514913121110180
ECOL331111:6:Tno1716151481311109180
ECOL362663:0:Tno1615141381211109170
ECOL364106:1:Tno17161514913121110180
ECOL405955:2:Tyes15141312-111098160
ECOL409438:6:Tyes1715141381211109180
ECOL413997:0:Tno1615141381211109170
ECOL439855:4:Tno1716151481311109180
ECOL469008:0:Tno123495678019
ECOL481805:0:Tno123495678017
ECOL585034:0:Tno181716151014131211190
ECOL585035:0:Tno181716151014131211190
ECOL585055:0:Tno181716151014131211190
ECOL585056:2:Tno191817161115141312200
ECOL585057:0:Tno181716151014131211190
ECOL585397:0:Tno181716151014131211190
ECOL83334:0:Tno201918171216151413210
ECOLI:0:Tno191817161115141312200
ECOO157:0:Tno201918171216151413-0
EFAE226185:3:Tyes---0-------
EFER585054:1:Tyes123495678020
ELIT314225:0:Tyes7012149---2180--0626-
ERUM254945:0:Tyes-2432462470-249397251--
ERUM302409:0:Tno-2442452460-248392250--
ESP42895:1:Tyes191817161115141312200
FALN326424:0:Tyes---2441-3002---0-
FJOH376686:0:Tyes--2895----13320--
FMAG334413:1:Tyes-0---------
FNOD381764:0:Tyes-0---------
FNUC190304:0:Tyes-115801-------
FPHI484022:1:Tyes1307-1356--0---1258-
FRANT:0:Tno52-0------160-
FSP106370:0:Tyes---358-1799---0-
FSP1855:0:Tyes---0-4706--25623043-
FSUC59374:0:Tyes3011268-----127-0-
FTUL351581:0:Tno392-0------346-
FTUL393011:0:Tno353-0------311-
FTUL393115:0:Tyes51-0------149-
FTUL401614:0:Tyes49-0------100-
FTUL418136:0:Tno50-189------0-
FTUL458234:0:Tno361-0------316-
GBET391165:0:Tyes11158851921--1297-019201062-
GFOR411154:0:Tyes--321--3010-19570--
GKAU235909:1:Tyes-151715161961-1925---0-
GMET269799:1:Tyes671175296295---2838-0-
GOXY290633:5:Tyes1527954---1503-61811250-
GSUL243231:0:Tyes1431252619661967---0-903-
GTHE420246:1:Tyes-153215311977-----0-
GURA351605:0:Tyes1815128412831613---0-3130-
GVIO251221:0:Tyes8296063097529063095-2978-0-
HACI382638:1:Tyes--10-------
HARS204773:0:Tyes073727166706968671-
HAUR316274:2:Tyes2844257635030---35-2913-
HBUT415426:0:Tyes0----------
HCHE349521:0:Tyes310030983097--179-0121047043093
HDUC233412:0:Tyes10585595605615675625635655660525
HHAL349124:0:Tyes15900---1588-1268208315911584
HHEP235279:0:Tyes--10---103---
HINF281310:0:Tyes13121110498655770
HINF374930:0:Tyes-01283467107113
HINF71421:0:Tno13121110498655670
HMAR272569:6:Tyes---------0-
HMAR272569:8:Tyes0--2762-231-----
HMOD498761:0:Tyes-023-------
HMUK485914:1:Tyes1535--0-1209-----
HNEP81032:0:Tyes0----1411-21056991973-
HPY:0:Tno--01-------
HPYL357544:1:Tyes--01-------
HPYL85963:0:Tno--01-------
HSAL478009:4:Tyes0--905-------
HSOM205914:1:Tyes1234-56780127
HSOM228400:0:Tno1234-56780585
HSP64091:2:Tno0--883-------
HWAL362976:1:Tyes0--941-244-----
IHOS453591:0:Tyes0----------
ILOI283942:0:Tyes193619351934--0--74619371929
JSP290400:1:Tyes14181350---1516--21670-
JSP375286:0:Tyes480127345647891
KPNE272620:2:Tyes191817161115141312200
KRAD266940:2:Fyes---------0-
LBIF355278:2:Tyes---0---2232-2120-
LBIF456481:2:Tno---0---2316-2202-
LBOR355276:1:Tyes-------0-242-
LBOR355277:1:Tno-------239-0-
LCHO395495:0:Tyes1776318319-3232201761852
LINN272626:1:Tno-496-1500-----0-
LINT189518:1:Tyes---794---3502-0-
LINT267671:1:Tno---2400---323-0-
LINT363253:3:Tyes--01---645---
LMON169963:0:Tno-450-1398-----0-
LMON265669:0:Tyes-4504481290-----0-
LPLA220668:0:Tyes----------0
LPNE272624:0:Tno1140-11390-1137-1418-1141939
LPNE297245:1:Fno223-222--220-522-2240
LPNE297246:1:Fyes1044-10430-1041-1346-1045838
LPNE400673:0:Tno214-2131690-211-531-2150
LSPH444177:1:Tyes-3208-0-----838-
LWEL386043:0:Tyes-484-1315-----0-
LXYL281090:0:Tyes-----0-----
MABS561007:1:Tyes--03593----9641927-
MACE188937:0:Tyes0-19761975-------
MAEO419665:0:Tyes0----------
MAER449447:0:Tyes27519374286--3644-0-2552-
MAQU351348:2:Tyes511513514--2529--02871518
MAVI243243:0:Tyes---0-------
MBAR269797:1:Tyes0-1562815-------
MBOV233413:0:Tno-0---------
MBOV410289:0:Tno-0---------
MBUR259564:0:Tyes2032--0-------
MCAP243233:0:Tyes22362498012441345622351045
MEXT419610:0:Tyes2560----3388-237538740-
MFLA265072:0:Tyes97541116321010818
MGIL350054:3:Tyes-0---682--2335--
MHUN323259:0:Tyes0-11691170-------
MJAN243232:2:Tyes0----------
MKAN190192:0:Tyes0----------
MLAB410358:0:Tyes865-10-------
MLOT266835:2:Tyes11--4647-0-36806163044-
MMAG342108:0:Tyes843174417421741173617401739173817370-
MMAR267377:0:Tyes0----------
MMAR368407:0:Tyes0-11681402-------
MMAR394221:0:Tyes9281226---1236-2905024972172
MMAR402880:1:Tyes0----------
MMAR426368:0:Tyes0----------
MMAR444158:0:Tyes0----------
MMAZ192952:0:Tyes1776-01895-------
MPET420662:1:Tyes841264263262-2612602592588420
MSED399549:0:Tyes0----------
MSME246196:0:Tyes-688---0-----
MSP164756:1:Tno-707------0--
MSP164757:0:Tno-713------0--
MSP189918:2:Tyes-722------0--
MSP266779:0:Tyes--0--------
MSP266779:3:Tyes600----1113-07432522-
MSP400668:0:Tyes73408--5---247712
MSP409:2:Tyes0-902903-1624-352033183260-
MSTA339860:0:Tyes42-01-------
MSUC221988:0:Tyes98750432110207
MTBCDC:0:Tno-0---------
MTBRV:0:Tno-0---------
MTHE187420:0:Tyes0----------
MTHE264732:0:Tyes-210-------
MTHE349307:0:Tyes620-1290-------
MTUB336982:0:Tno-0---------
MTUB419947:0:Tyes-0---------
MVAN350058:0:Tyes-3483---2636--0--
MXAN246197:0:Tyes475-29682969-29702971297229730-
NARO279238:0:Tyes2069----0--26381778-
NEUR228410:0:Tyes18341326-1320-1325-1830-18350
NEUT335283:2:Tyes1823---822-5-01737
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