CANDIDATE ID: 111

CANDIDATE ID: 111

NUMBER OF GENES: 10
AVERAGE SCORE:    9.9932751e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    9.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7682 (degQ) (b3234)
   Products of gene:
     - G7682-MONOMER (serine endoprotease, periplasmic)
       Reactions:
        a polypeptide[periplasmic space]  =  2 a polypeptide[periplasmic space]

- G7659 (mlaC) (b3192)
   Products of gene:
     - G7659-MONOMER (MlaC)
     - ABC-45-CPLX (phospholipid ABC transporter)

- G7657 (yrbA) (b3190)
   Products of gene:
     - G7657-MONOMER (predicted DNA-binding transcriptional regulator)

- EG12801 (mlaF) (b3195)
   Products of gene:
     - YRBF-MONOMER (MlaF)
     - ABC-45-CPLX (phospholipid ABC transporter)

- EG12800 (mlaE) (b3194)
   Products of gene:
     - YRBE-MONOMER (MlaE)
     - ABC-45-CPLX (phospholipid ABC transporter)

- EG12799 (mlaD) (b3193)
   Products of gene:
     - EG12799-MONOMER (MlaD)
     - ABC-45-CPLX (phospholipid ABC transporter)

- EG11652 (degS) (b3235)
   Products of gene:
     - EG11652-MONOMER (DegS serine endoprotease)

- EG11358 (murA) (b3189)
   Products of gene:
     - UDPNACETYLGLUCOSAMENOLPYRTRANS-MONOMER (UDP-N-acetylglucosamine enolpyruvoyl transferase)
       Reactions:
        UDP-alpha-N-acetyl-D-glucosamine + phosphoenolpyruvate  =  UDP-N-acetylglucosamine-enolpyruvate + phosphate
         In pathways
         PWY-6470 (PWY-6470)
         PWY-6471 (PWY-6471)
         PWY-5265 (PWY-5265)
         PWY-6385 (PWY-6385)
         PEPTIDOGLYCANSYN-PWY (peptidoglycan biosynthesis I (meso-diaminopimelate containing))
         PWY-6386 (PWY-6386)
         PWY-6387 (UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-DAP-containing))

- EG10978 (sspB) (b3228)
   Products of gene:
     - EG10978-MONOMER (SspB)
     - CPLX0-2681 (ClpXP protease specificity-enhancing factor)

- EG10977 (sspA) (b3229)
   Products of gene:
     - EG10977-MONOMER (stringent starvation protein A)



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 159
Effective number of orgs (counting one per cluster within 468 clusters): 99

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175810
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295310
YPES386656 ncbi Yersinia pestis Pestoides F10
YPES377628 ncbi Yersinia pestis Nepal51610
YPES360102 ncbi Yersinia pestis Antiqua10
YPES349746 ncbi Yersinia pestis Angola10
YPES214092 ncbi Yersinia pestis CO9210
YPES187410 ncbi Yersinia pestis KIM 1010
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808110
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A9
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110189
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103319
XFAS405440 ncbi Xylella fastidiosa M129
XFAS183190 ncbi Xylella fastidiosa Temecula19
XFAS160492 ncbi Xylella fastidiosa 9a5c9
XCAM487884 Xanthomonas campestris pv. paulliniae9
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-109
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80049
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339139
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3069
VVUL216895 ncbi Vibrio vulnificus CMCP610
VVUL196600 ncbi Vibrio vulnificus YJ01610
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 221063310
VFIS312309 ncbi Vibrio fischeri ES11410
VEIS391735 ncbi Verminephrobacter eiseniae EF01-210
VCHO345073 ncbi Vibrio cholerae O39510
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696110
TDEN292415 ncbi Thiobacillus denitrificans ATCC 2525910
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT210
SSP94122 ncbi Shewanella sp. ANA-310
SSON300269 ncbi Shigella sonnei Ss04610
SSED425104 ncbi Shewanella sediminis HAW-EB310
SPRO399741 ncbi Serratia proteamaculans 56810
SPEA398579 ncbi Shewanella pealeana ATCC 70034510
SONE211586 ncbi Shewanella oneidensis MR-110
SLOI323850 ncbi Shewanella loihica PV-410
SHIGELLA ncbi Shigella flexneri 2a str. 2457T10
SHAL458817 ncbi Shewanella halifaxensis HAW-EB410
SGLO343509 ncbi Sodalis glossinidius morsitans10
SFLE373384 ncbi Shigella flexneri 5 str. 840110
SFLE198214 ncbi Shigella flexneri 2a str. 30110
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47610
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915010
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1810
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty210
SDYS300267 ncbi Shigella dysenteriae Sd19710
SDEN318161 ncbi Shewanella denitrificans OS21710
SBOY300268 ncbi Shigella boydii Sb22710
SBAL402882 ncbi Shewanella baltica OS18510
SBAL399599 ncbi Shewanella baltica OS19510
RSOL267608 ncbi Ralstonia solanacearum GMI100010
RMET266264 ncbi Ralstonia metallidurans CH3410
RFER338969 ncbi Rhodoferax ferrireducens T11810
REUT381666 ncbi Ralstonia eutropha H1610
REUT264198 ncbi Ralstonia eutropha JMP13410
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC300010
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a10
PSTU379731 ncbi Pseudomonas stutzeri A15019
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-110
PSP296591 ncbi Polaromonas sp. JS66610
PPUT76869 ncbi Pseudomonas putida GB-110
PPUT351746 ncbi Pseudomonas putida F110
PPUT160488 ncbi Pseudomonas putida KT244010
PPRO298386 ncbi Photobacterium profundum SS910
PNAP365044 ncbi Polaromonas naphthalenivorans CJ210
PMUL272843 ncbi Pasteurella multocida multocida Pm7010
PMEN399739 ncbi Pseudomonas mendocina ymp9
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO110
PING357804 ncbi Psychromonas ingrahamii 3710
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC12510
PFLU220664 ncbi Pseudomonas fluorescens Pf-59
PFLU216595 ncbi Pseudomonas fluorescens SBW259
PFLU205922 ncbi Pseudomonas fluorescens Pf0-110
PENT384676 ncbi Pseudomonas entomophila L4810
PATL342610 ncbi Pseudoalteromonas atlantica T6c10
PAER208964 ncbi Pseudomonas aeruginosa PAO110
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA1410
NOCE323261 ncbi Nitrosococcus oceani ATCC 1970710
NMUL323848 ncbi Nitrosospira multiformis ATCC 2519610
NMEN122586 ncbi Neisseria meningitidis MC589
NEUT335283 ncbi Nitrosomonas eutropha C9110
NEUR228410 ncbi Nitrosomonas europaea ATCC 1971810
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E10
MSP400668 ncbi Marinomonas sp. MWYL19
MPET420662 ncbi Methylibium petroleiphilum PM110
MMAG342108 ncbi Magnetospirillum magneticum AMB-19
MFLA265072 ncbi Methylobacillus flagellatus KT10
MCAP243233 ncbi Methylococcus capsulatus Bath10
MAQU351348 ncbi Marinobacter aquaeolei VT89
LPNE400673 ncbi Legionella pneumophila Corby10
LPNE297246 ncbi Legionella pneumophila Paris10
LPNE297245 ncbi Legionella pneumophila Lens10
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 110
LCHO395495 ncbi Leptothrix cholodnii SP-610
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857810
JSP375286 ncbi Janthinobacterium sp. Marseille10
ILOI283942 ncbi Idiomarina loihiensis L2TR10
HSOM228400 ncbi Haemophilus somnus 233610
HSOM205914 ncbi Haemophilus somnus 129PT10
HINF71421 ncbi Haemophilus influenzae Rd KW2010
HINF374930 ncbi Haemophilus influenzae PittEE10
HINF281310 ncbi Haemophilus influenzae 86-028NP10
HHAL349124 ncbi Halorhodospira halophila SL110
HDUC233412 ncbi Haemophilus ducreyi 35000HP10
HCHE349521 ncbi Hahella chejuensis KCTC 23969
HARS204773 ncbi Herminiimonas arsenicoxydans10
ESP42895 Enterobacter sp.10
EFER585054 ncbi Escherichia fergusonii ATCC 3546910
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H710
ECOL585397 ncbi Escherichia coli ED1a10
ECOL585057 ncbi Escherichia coli IAI3910
ECOL585056 ncbi Escherichia coli UMN02610
ECOL585055 ncbi Escherichia coli 5598910
ECOL585035 ncbi Escherichia coli S8810
ECOL585034 ncbi Escherichia coli IAI110
ECOL481805 ncbi Escherichia coli ATCC 873910
ECOL469008 ncbi Escherichia coli BL21(DE3)10
ECOL439855 ncbi Escherichia coli SMS-3-510
ECOL413997 ncbi Escherichia coli B str. REL60610
ECOL409438 ncbi Escherichia coli SE1110
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8910
ECOL362663 ncbi Escherichia coli 53610
ECOL331111 ncbi Escherichia coli E24377A10
ECOL316407 ncbi Escherichia coli K-12 substr. W311010
ECOL199310 ncbi Escherichia coli CFT07310
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104310
DARO159087 ncbi Dechloromonas aromatica RCB10
CSAL290398 ncbi Chromohalobacter salexigens DSM 304310
CPSY167879 ncbi Colwellia psychrerythraea 34H10
BVIE269482 ncbi Burkholderia vietnamiensis G410
BTHA271848 ncbi Burkholderia thailandensis E26410
BSP36773 Burkholderia sp.10
BPSE320373 ncbi Burkholderia pseudomallei 66810
BPSE320372 ncbi Burkholderia pseudomallei 1710b10
BPSE272560 ncbi Burkholderia pseudomallei K9624310
BPET94624 Bordetella petrii10
BPER257313 ncbi Bordetella pertussis Tohama I10
BPAR257311 ncbi Bordetella parapertussis 1282210
BMAL320389 ncbi Burkholderia mallei NCTC 1024710
BMAL320388 ncbi Burkholderia mallei SAVP110
BMAL243160 ncbi Burkholderia mallei ATCC 2334410
BCEN331272 ncbi Burkholderia cenocepacia HI242410
BCEN331271 ncbi Burkholderia cenocepacia AU 105410
BBRO257310 ncbi Bordetella bronchiseptica RB5010
BAMB398577 ncbi Burkholderia ambifaria MC40-610
BAMB339670 ncbi Burkholderia ambifaria AMMD10
ASP76114 ncbi Aromatoleum aromaticum EbN110
ASP62977 ncbi Acinetobacter sp. ADP110
ASP62928 ncbi Azoarcus sp. BH7210
ASP232721 ncbi Acidovorax sp. JS4210
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44910
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL0310
APLE416269 ncbi Actinobacillus pleuropneumoniae L2010
AHYD196024 Aeromonas hydrophila dhakensis10
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-110
ABAU360910 ncbi Bordetella avium 197N10


Names of the homologs of the genes in the group in each of these orgs
  G7682   G7659   G7657   EG12801   EG12800   EG12799   EG11652   EG11358   EG10978   EG10977   
YPSE349747 YPSIP31758_0456YPSIP31758_0451YPSIP31758_0453YPSIP31758_0448YPSIP31758_0449YPSIP31758_0450YPSIP31758_0455YPSIP31758_0454YPSIP31758_0463YPSIP31758_0462
YPSE273123 YPTB3511YPTB3516YPTB3514YPTB3519YPTB3518YPTB3517YPTB3512YPTB3513YPTB3505YPTB3506
YPES386656 YPDSF_0331YPDSF_0325YPDSF_0327YPDSF_0322YPDSF_0323YPDSF_0324YPDSF_0329YPDSF_0328YPDSF_0337YPDSF_0336
YPES377628 YPN_3448YPN_3454YPN_3452YPN_3457YPN_3456YPN_3455YPN_3450YPN_3451YPN_3442YPN_3443
YPES360102 YPA_3737YPA_3731YPA_3733YPA_3728YPA_3729YPA_3730YPA_3735YPA_3734YPA_3743YPA_3742
YPES349746 YPANGOLA_A1137YPANGOLA_A1143YPANGOLA_A1141YPANGOLA_A1146YPANGOLA_A1145YPANGOLA_A1144YPANGOLA_A1139YPANGOLA_A1140YPANGOLA_A1131YPANGOLA_A1132
YPES214092 YPO3566YPO3572YPO3570YPO3575YPO3574YPO3573YPO3568YPO3569YPO3560YPO3561
YPES187410 Y0137Y0143Y0141Y0146Y0145Y0144Y0139Y0140Y0131Y0132
YENT393305 YE3744YE3749YE3747YE3752YE3751YE3750YE3745YE3746YE3738YE3739
XORY360094 XOOORF_0060XOOORF_5081XOOORF_5078XOOORF_5079XOOORF_5080XOOORF_0060XOOORF_4027XOOORF_1949XOOORF_1948
XORY342109 XOO0115XOO0278XOO0281XOO0280XOO0279XOO0115XOO1190XOO2598XOO2599
XORY291331 XOO0059XOO0307XOO0310XOO0309XOO0308XOO0059XOO1290XOO2758XOO2759
XFAS405440 XFASM12_0250XFASM12_1819XFASM12_1816XFASM12_1817XFASM12_1818XFASM12_0250XFASM12_0763XFASM12_1941XFASM12_1942
XFAS183190 PD_0231PD_1657PD_1654PD_1655PD_1656PD_0231PD_0644PD_1773PD_1774
XFAS160492 XF0285XF0418XF0421XF0420XF0419XF0285XF1415XF0912XF0911
XCAM487884 XCC-B100_4087XCC-B100_4430XCC-B100_4427XCC-B100_4428XCC-B100_4429XCC-B100_4087XCC-B100_1365XCC-B100_1852XCC-B100_1851
XCAM316273 XCAORF_0378XCAORF_4554XCAORF_4551XCAORF_4552XCAORF_4553XCAORF_0378XCAORF_3166XCAORF_2593XCAORF_2594
XCAM314565 XC_3986XC_4299XC_4296XC_4297XC_4298XC_3986XC_1318XC_1796XC_1795
XCAM190485 XCC3898XCC4210XCC4207XCC4208XCC4209XCC3898XCC2795XCC2320XCC2321
XAXO190486 XAC3980XAC4342XAC4339XAC4340XAC4341XAC3980XAC2965XAC2453XAC2454
VVUL216895 VV1_0603VV1_0682VV1_0680VV1_0685VV1_0684VV1_0683VV1_0604VV1_0679VV1_0593VV1_0594
VVUL196600 VV0591VV0458VV0460VV0455VV0456VV0457VV0590VV0461VV0600VV0599
VPAR223926 VP0433VP2661VP2659VP2664VP2663VP2662VP0432VP2658VP0445VP0444
VFIS312309 VF2225VF0397VF0400VF0394VF0395VF0396VF2226VF0401VF2215VF2216
VEIS391735 VEIS_1784VEIS_2401VEIS_4454VEIS_2397VEIS_2398VEIS_2399VEIS_1784VEIS_4453VEIS_3931VEIS_3932
VCHO345073 VC0395_A0100VC0395_A2099VC0395_A2097VC0395_A2102VC0395_A2101VC0395_A2100VC0395_A0099VC0395_A2096VC0395_A0109VC0395_A0108
VCHO VC0566VC2517VC2515VC2520VC2519VC2518VC0565VC2514VC0577VC0576
TDEN292415 TBD_1834TBD_1896TBD_1892TBD_1900TBD_1899TBD_1898TBD_1834TBD_1891TBD_1829TBD_1830
STYP99287 STM3348STM3310STM3308STM3313STM3312STM3311STM3349STM3307STM3341STM3342
SSP94122 SHEWANA3_0690SHEWANA3_0681SHEWANA3_0683SHEWANA3_0678SHEWANA3_0679SHEWANA3_0680SHEWANA3_0689SHEWANA3_0684SHEWANA3_0605SHEWANA3_0604
SSON300269 SSO_3375SSO_3340SSO_3338SSO_3343SSO_3342SSO_3341SSO_3376SSO_3337SSO_3369SSO_3370
SSED425104 SSED_0744SSED_0736SSED_0738SSED_0733SSED_0734SSED_0735SSED_0743SSED_0739SSED_0805SSED_0804
SPRO399741 SPRO_4352SPRO_4357SPRO_4355SPRO_4360SPRO_4359SPRO_4358SPRO_4353SPRO_4354SPRO_4346SPRO_4347
SPEA398579 SPEA_3598SPEA_3606SPEA_3604SPEA_3609SPEA_3608SPEA_3607SPEA_3599SPEA_3603SPEA_3532SPEA_3533
SONE211586 SO_3942SO_3951SO_3949SO_3954SO_3953SO_3952SO_3943SO_3948SO_0612SO_0611
SLOI323850 SHEW_3296SHEW_3301SHEW_3299SHEW_3304SHEW_3303SHEW_3302SHEW_3297SHEW_3298SHEW_0574SHEW_0573
SHIGELLA HTRAYRBCYRBAVPSAVPSBVPSCDEGSMURASSPBSSPA
SHAL458817 SHAL_3686SHAL_3695SHAL_3693SHAL_3698SHAL_3697SHAL_3696SHAL_3687SHAL_3692SHAL_3626SHAL_3627
SGLO343509 SG0213SG0208SG0210SG0205SG0206SG0207SG0212SG0211SG0219SG0218
SFLE373384 SFV_3261SFV_3222SFV_3220SFV_3225SFV_3224SFV_3223SFV_3262SFV_3219SFV_3255SFV_3256
SFLE198214 AAN44738.1AAN44698.1AAN44696.1AAN44701.1AAN44700.1AAN44699.1AAN44739.1AAN44695.1AAN44732.1AAN44733.1
SENT454169 SEHA_C3646SEHA_C3607SEHA_C3605SEHA_C3610SEHA_C3609SEHA_C3608SEHA_C3647SEHA_C3604SEHA_C3639SEHA_C3640
SENT321314 SCH_3286SCH_3248SCH_3246SCH_3251SCH_3250SCH_3249SCH_3287SCH_3245SCH_3279SCH_3280
SENT295319 SPA3215SPA3177SPA3175SPA3180SPA3179SPA3178SPA3216SPA3174SPA3209SPA3210
SENT220341 STY3528STY3489STY3487STY3492STY3491STY3490STY3529STY3486STY3522STY3523
SENT209261 T3264T3227T3225T3230T3229T3228T3265T3224T3258T3259
SDYS300267 SDY_3410SDY_3373SDY_3371SDY_3376SDY_3375SDY_3374SDY_3411SDY_3370SDY_3404SDY_3405
SDEN318161 SDEN_0504SDEN_0499SDEN_0501SDEN_0496SDEN_0497SDEN_0498SDEN_0503SDEN_0502SDEN_3197SDEN_3198
SBOY300268 SBO_3155SBO_3190SBO_3192SBO_3187SBO_3188SBO_3189SBO_3154SBO_3193SBO_3161SBO_3160
SBAL402882 SHEW185_0700SHEW185_0695SHEW185_0697SHEW185_0692SHEW185_0693SHEW185_0694SHEW185_0699SHEW185_0698SHEW185_3759SHEW185_3760
SBAL399599 SBAL195_0730SBAL195_0725SBAL195_0727SBAL195_0722SBAL195_0723SBAL195_0724SBAL195_0729SBAL195_0728SBAL195_3885SBAL195_3886
RSOL267608 RSC2932RSC2958RSC2954RSC2962RSC2961RSC2960RSC2932RSC2953RSC2925RSC2926
RMET266264 RMET_3233RMET_3255RMET_3251RMET_3259RMET_3258RMET_3257RMET_3233RMET_3250RMET_3226RMET_3227
RFER338969 RFER_2959RFER_2063RFER_2943RFER_2935RFER_2936RFER_2937RFER_2959RFER_2944RFER_2968RFER_2967
REUT381666 H16_A3401H16_A3423H16_A3419H16_A3427H16_A3426H16_A3425H16_A3401H16_A3418H16_A3394H16_A3395
REUT264198 REUT_A3096REUT_A3118REUT_A3114REUT_A3122REUT_A3121REUT_A3120REUT_A3096REUT_A3113REUT_A3089REUT_A3090
PSYR223283 PSPTO_4435PSPTO_4444PSPTO_4442PSPTO_4447PSPTO_4446PSPTO_4445PSPTO_4435PSPTO_4441PSPTO_4423PSPTO_4424
PSYR205918 PSYR_4130PSYR_4138PSYR_4136PSYR_4141PSYR_4140PSYR_4139PSYR_4130PSYR_4135PSYR_4117PSYR_4118
PSTU379731 PST_1227PST_1043PST_1037PST_1038PST_1039PST_1048PST_1044PST_1067PST_1066
PSP312153 PNUC_0123PNUC_0100PNUC_0104PNUC_0096PNUC_0097PNUC_0098PNUC_0123PNUC_0105PNUC_0129PNUC_0128
PSP296591 BPRO_0817BPRO_0797BPRO_0801BPRO_0793BPRO_0794BPRO_0795BPRO_0817BPRO_0802BPRO_0825BPRO_0824
PPUT76869 PPUTGB1_4377PPUTGB1_0968PPUTGB1_0970PPUTGB1_0965PPUTGB1_0966PPUTGB1_0967PPUTGB1_4548PPUTGB1_0971PPUTGB1_4528PPUTGB1_4529
PPUT351746 PPUT_4291PPUT_1000PPUT_1002PPUT_0997PPUT_0998PPUT_0999PPUT_4424PPUT_1003PPUT_4403PPUT_4404
PPUT160488 PP_1430PP_0961PP_0963PP_0958PP_0959PP_0960PP_1301PP_0964PP_1321PP_1320
PPRO298386 PBPRA3240PBPRA3245PBPRA3243PBPRA3248PBPRA3247PBPRA3246PBPRA3241PBPRA3242PBPRA3231PBPRA3232
PNAP365044 PNAP_0709PNAP_0689PNAP_0693PNAP_0685PNAP_0686PNAP_0687PNAP_0709PNAP_0694PNAP_0717PNAP_0716
PMUL272843 PM0734PM0177PM0179PM0174PM0175PM0176PM0748PM0180PM0523PM0522
PMEN399739 PMEN_1471PMEN_0881PMEN_0876PMEN_0877PMEN_0878PMEN_0888PMEN_0882PMEN_0907PMEN_0906
PLUM243265 PLU4018PLU4031PLU4029PLU4034PLU4033PLU4032PLU4022PLU4028PLU4012PLU4013
PING357804 PING_1037PING_2884PING_2882PING_2887PING_2886PING_2885PING_2880PING_2881PING_2870PING_2871
PHAL326442 PSHAA2536PSHAA2541PSHAA2539PSHAA2544PSHAA2543PSHAA2542PSHAA2537PSHAA2538PSHAA2526PSHAA2527
PFLU220664 PFL_1451PFL_0926PFL_0921PFL_0922PFL_0923PFL_0933PFL_0927PFL_5076PFL_5077
PFLU216595 PFLU0891PFLU0893PFLU0888PFLU0889PFLU0890PFLU0758PFLU0894PFLU0845PFLU0844
PFLU205922 PFL_1365PFL_0866PFL_0868PFL_0863PFL_0864PFL_0865PFL_0875PFL_0869PFL_4688PFL_4689
PENT384676 PSEEN4293PSEEN1102PSEEN1104PSEEN1099PSEEN1100PSEEN1101PSEEN4521PSEEN1105PSEEN4501PSEEN4502
PATL342610 PATL_0553PATL_0558PATL_0556PATL_0561PATL_0560PATL_0559PATL_0554PATL_0555PATL_3697PATL_3698
PAER208964 PA0766PA4453PA4451PA4456PA4455PA4454PA4446PA4450PA4427PA4428
PAER208963 PA14_54390PA14_57840PA14_57820PA14_57880PA14_57870PA14_57850PA14_57760PA14_57810PA14_57520PA14_57530
NOCE323261 NOC_2139NOC_2782NOC_2387NOC_2786NOC_2785NOC_2784NOC_2139NOC_2780NOC_0295NOC_0296
NMUL323848 NMUL_A0510NMUL_A2746NMUL_A2742NMUL_A2749NMUL_A2748NMUL_A2747NMUL_A0510NMUL_A0886NMUL_A1001NMUL_A1002
NMEN122586 NMB_0532NMB_1963NMB_0009NMB_1966NMB_1965NMB_1964NMB_0011NMB_1952NMB_1953
NEUT335283 NEUT_1685NEUT_0854NEUT_0858NEUT_0851NEUT_0852NEUT_0853NEUT_1685NEUT_1556NEUT_1114NEUT_1113
NEUR228410 NE1508NE2381NE2377NE2384NE2383NE2382NE1508NE1852NE0813NE0812
MSUC221988 MS0993MS1710MS1708MS1713MS1712MS1711MS1373MS1707MS1280MS1281
MSP400668 MMWYL1_1102MMWYL1_2409MMWYL1_2413MMWYL1_2412MMWYL1_2411MMWYL1_2404MMWYL1_2408MMWYL1_2397MMWYL1_2398
MPET420662 MPE_A0844MPE_A3097MPE_A0828MPE_A3101MPE_A3100MPE_A3099MPE_A0844MPE_A0829MPE_A0853MPE_A0852
MMAG342108 AMB3492AMB3485AMB2116AMB0331AMB2094AMB2743AMB3481AMB1982AMB3942
MFLA265072 MFLA_0261MFLA_0240MFLA_0244MFLA_0237MFLA_0238MFLA_0239MFLA_0261MFLA_0246MFLA_0264MFLA_0263
MCAP243233 MCA_2343MCA_2792MCA_0260MCA_1969MCA_1968MCA_1967MCA_2343MCA_1965MCA_1958MCA_1959
MAQU351348 MAQU_2259MAQU_2706MAQU_2704MAQU_2709MAQU_2708MAQU_2707MAQU_2703MAQU_2466MAQU_2467
LPNE400673 LPC_0747LPC_2451LPC_2449LPC_2454LPC_2453LPC_2452LPC_0747LPC_2448LPC_0434LPC_0433
LPNE297246 LPP1285LPP0906LPP0908LPP0903LPP0904LPP0905LPP1285LPP0909LPP2756LPP2757
LPNE297245 LPL1284LPL0875LPL0877LPL0872LPL0873LPL0874LPL1284LPL0878LPL2629LPL2630
LPNE272624 LPG1331LPG0844LPG0846LPG0841LPG0842LPG0843LPG1331LPG0847LPG2701LPG2702
LCHO395495 LCHO_1605LCHO_3390LCHO_1584LCHO_3394LCHO_3393LCHO_3392LCHO_1605LCHO_1585LCHO_0934LCHO_0933
KPNE272620 GKPORF_B2968GKPORF_B2937GKPORF_B2935GKPORF_B2940GKPORF_B2939GKPORF_B2938GKPORF_B2969GKPORF_B2934GKPORF_B2962GKPORF_B2963
JSP375286 MMA_3275MMA_3295MMA_3291MMA_3299MMA_3298MMA_3297MMA_3275MMA_3290MMA_3267MMA_3268
ILOI283942 IL0411IL0406IL0408IL0403IL0404IL0405IL0410IL0409IL0420IL0419
HSOM228400 HSM_1285HSM_1587HSM_1585HSM_1590HSM_1589HSM_1588HSM_1533HSM_1584HSM_1222HSM_1221
HSOM205914 HS_0816HS_1170HS_1168HS_1173HS_1172HS_1171HS_1049HS_1167HS_0755HS_0754
HINF71421 HI_1259HI_1084HI_1082HI_1087HI_1086HI_1085HI_0945HI_1081HI_1440HI_1441
HINF374930 CGSHIEE_04045CGSHIEE_06645CGSHIEE_06655CGSHIEE_06630CGSHIEE_06635CGSHIEE_06640CGSHIEE_07240CGSHIEE_06660CGSHIEE_04800CGSHIEE_04805
HINF281310 NTHI1905NTHI1247NTHI1245NTHI1250NTHI1249NTHI1248NTHI1116NTHI1244NTHI1690NTHI1689
HHAL349124 HHAL_2110HHAL_2117HHAL_2115HHAL_2120HHAL_2119HHAL_2118HHAL_2110HHAL_2114HHAL_2105HHAL_2106
HDUC233412 HD_0260HD_0256HD_0254HD_0259HD_0258HD_0257HD_1350HD_0253HD_1426HD_1425
HCHE349521 HCH_01114HCH_05308HCH_05314HCH_05313HCH_05312HCH_05303HCH_05307HCH_10003HCH_05897
HARS204773 HEAR3056HEAR3076HEAR3072HEAR3080HEAR3079HEAR3078HEAR3056HEAR3071HEAR3048HEAR3049
ESP42895 ENT638_3669ENT638_3628ENT638_3626ENT638_3631ENT638_3630ENT638_3629ENT638_3670ENT638_3625ENT638_3663ENT638_3664
EFER585054 EFER_3205EFER_3169EFER_3167EFER_3172EFER_3171EFER_3170EFER_3206EFER_3166EFER_3198EFER_3199
ECOO157 DEGQYRBCYRBAYRBFYRBEYRBDDEGSMURASSPBSSPA
ECOL83334 ECS4107ECS4071ECS4069ECS4074ECS4073ECS4072ECS4108ECS4068ECS4101ECS4102
ECOL585397 ECED1_3884ECED1_3850ECED1_3848ECED1_3853ECED1_3852ECED1_3851ECED1_3885ECED1_3847ECED1_3878ECED1_3879
ECOL585057 ECIAI39_3724ECIAI39_3687ECIAI39_3685ECIAI39_3690ECIAI39_3689ECIAI39_3688ECIAI39_3725ECIAI39_3684ECIAI39_3717ECIAI39_3718
ECOL585056 ECUMN_3708ECUMN_3672ECUMN_3670ECUMN_3675ECUMN_3674ECUMN_3673ECUMN_3709ECUMN_3669ECUMN_3702ECUMN_3703
ECOL585055 EC55989_3647EC55989_3610EC55989_3608EC55989_3613EC55989_3612EC55989_3611EC55989_3648EC55989_3607EC55989_3641EC55989_3642
ECOL585035 ECS88_3610ECS88_3574ECS88_3572ECS88_3577ECS88_3576ECS88_3575ECS88_3611ECS88_3571ECS88_3604ECS88_3605
ECOL585034 ECIAI1_3376ECIAI1_3340ECIAI1_3338ECIAI1_3343ECIAI1_3342ECIAI1_3341ECIAI1_3377ECIAI1_3337ECIAI1_3370ECIAI1_3371
ECOL481805 ECOLC_0472ECOLC_0508ECOLC_0510ECOLC_0505ECOLC_0506ECOLC_0507ECOLC_0471ECOLC_0511ECOLC_0478ECOLC_0477
ECOL469008 ECBD_0513ECBD_0550ECBD_0552ECBD_0547ECBD_0548ECBD_0549ECBD_0512ECBD_0553ECBD_0519ECBD_0518
ECOL439855 ECSMS35_3530ECSMS35_3488ECSMS35_3486ECSMS35_3491ECSMS35_3490ECSMS35_3489ECSMS35_3531ECSMS35_3485ECSMS35_3523ECSMS35_3524
ECOL413997 ECB_03094ECB_03057ECB_03055ECB_03060ECB_03059ECB_03058ECB_03095ECB_03054ECB_03088ECB_03089
ECOL409438 ECSE_3513ECSE_3476ECSE_3474ECSE_3479ECSE_3478ECSE_3477ECSE_3514ECSE_3473ECSE_3507ECSE_3508
ECOL405955 APECO1_3210APECO1_3243APECO1_3244APECO1_3240APECO1_3241APECO1_3242APECO1_3209APECO1_3245APECO1_3216APECO1_3215
ECOL364106 UTI89_C3665UTI89_C3628UTI89_C3624UTI89_C3631UTI89_C3630UTI89_C3629UTI89_C3666UTI89_C3623UTI89_C3657UTI89_C3658
ECOL362663 ECP_3317ECP_3279ECP_3277ECP_3282ECP_3281ECP_3280ECP_3318ECP_3276ECP_3310ECP_3311
ECOL331111 ECE24377A_3717ECE24377A_3679ECE24377A_3676ECE24377A_3683ECE24377A_3682ECE24377A_3681ECE24377A_3718ECE24377A_3675ECE24377A_3710ECE24377A_3712
ECOL316407 ECK3223:JW3203:B3234ECK3181:JW3159:B3192ECK3179:JW3157:B3190ECK3184:JW3162:B3195ECK3183:JW3161:B3194ECK3182:JW3160:B3193ECK3224:JW3204:B3235ECK3178:JW3156:B3189ECK3217:JW3197:B3228ECK3218:JW3198:B3229
ECOL199310 C3989C3952C3948C3955C3954C3953C3990C3947C3981C3982
ECAR218491 ECA0303ECA0298ECA0300ECA0295ECA0296ECA0297ECA0302ECA0301ECA0309ECA0308
DARO159087 DARO_3371DARO_3398DARO_3394DARO_3402DARO_3401DARO_3400DARO_3371DARO_3393DARO_0813DARO_0812
CSAL290398 CSAL_2211CSAL_2217CSAL_2215CSAL_2220CSAL_2219CSAL_2218CSAL_2211CSAL_2214CSAL_2204CSAL_2205
CPSY167879 CPS_4346CPS_4533CPS_4531CPS_4536CPS_4535CPS_4534CPS_4347CPS_4530CPS_4436CPS_4437
BVIE269482 BCEP1808_0418BCEP1808_0397BCEP1808_0401BCEP1808_0393BCEP1808_0394BCEP1808_0395BCEP1808_0418BCEP1808_0402BCEP1808_0424BCEP1808_0423
BTHA271848 BTH_I2979BTH_I3000BTH_I2996BTH_I3004BTH_I3003BTH_I3002BTH_I2979BTH_I2995BTH_I2973BTH_I2974
BSP36773 BCEP18194_A3537BCEP18194_A3516BCEP18194_A3520BCEP18194_A3512BCEP18194_A3513BCEP18194_A3514BCEP18194_A3537BCEP18194_A3521BCEP18194_A3543BCEP18194_A3542
BPSE320373 BURPS668_3652BURPS668_3673BURPS668_3669BURPS668_3677BURPS668_3676BURPS668_3675BURPS668_3652BURPS668_3668BURPS668_3646BURPS668_3647
BPSE320372 BURPS1710B_A3977BURPS1710B_A3998BURPS1710B_A3994BURPS1710B_A4002BURPS1710B_A4001BURPS1710B_A4000BURPS1710B_A3977BURPS1710B_A3993BURPS1710B_A3971BURPS1710B_A3972
BPSE272560 BPSL3125BPSL3146BPSL3142BPSL3150BPSL3149BPSL3148BPSL3125BPSL3141BPSL3119BPSL3120
BPET94624 BPET0125BPET0144BPET0141BPET0148BPET0147BPET0146BPET0125BPET0140BPET0118BPET0119
BPER257313 BP2434BP3761BP3765BP3757BP3758BP3759BP0280BP3766BP0273BP0274
BPAR257311 BPP3298BPP4261BPP4264BPP4257BPP4258BPP4259BPP4280BPP4265BPP4287BPP4286
BMAL320389 BMA10247_2750BMA10247_2772BMA10247_2768BMA10247_2776BMA10247_2775BMA10247_2774BMA10247_2750BMA10247_2767BMA10247_2744BMA10247_2745
BMAL320388 BMASAVP1_A3254BMASAVP1_A3232BMASAVP1_A3236BMASAVP1_A3228BMASAVP1_A3229BMASAVP1_A3230BMASAVP1_A3254BMASAVP1_A3237BMASAVP1_A3260BMASAVP1_A3259
BMAL243160 BMA_2700BMA_2722BMA_2717BMA_2726BMA_2725BMA_2724BMA_2700BMA_2716BMA_2694BMA_2695
BCEN331272 BCEN2424_0439BCEN2424_0418BCEN2424_0422BCEN2424_0414BCEN2424_0415BCEN2424_0416BCEN2424_0439BCEN2424_0423BCEN2424_0445BCEN2424_0444
BCEN331271 BCEN_2668BCEN_2689BCEN_2685BCEN_2693BCEN_2692BCEN_2691BCEN_2668BCEN_2684BCEN_2662BCEN_2663
BBRO257310 BB3749BB4848BB4851BB4844BB4845BB4846BB4867BB4852BB4874BB4873
BAMB398577 BAMMC406_0366BAMMC406_0345BAMMC406_0349BAMMC406_0341BAMMC406_0342BAMMC406_0343BAMMC406_0366BAMMC406_0350BAMMC406_0372BAMMC406_0371
BAMB339670 BAMB_0357BAMB_0336BAMB_0340BAMB_0332BAMB_0333BAMB_0334BAMB_0357BAMB_0341BAMB_0363BAMB_0362
ASP76114 EBA2969EBA2206EBA1303EBA1313EBA1312EBA1311EBA1283EBA1302EBA1194EBA1195
ASP62977 ACIAD2586ACIAD3241ACIAD0659ACIAD3244ACIAD3243ACIAD3242ACIAD1348ACIAD0660ACIAD3015ACIAD3014
ASP62928 AZO3337AZO0810AZO0814AZO0806AZO0807AZO0808AZO3337AZO0815AZO0964AZO0963
ASP232721 AJS_0784AJS_0752AJS_0757AJS_0748AJS_0749AJS_0750AJS_0784AJS_0758AJS_0793AJS_0792
ASAL382245 ASA_0330ASA_0306ASA_0304ASA_0309ASA_0308ASA_0307ASA_0329ASA_0303ASA_0339ASA_0338
APLE434271 APJL_1306APJL_1302APJL_1300APJL_1305APJL_1304APJL_1303APJL_0744APJL_1299APJL_0647APJL_0648
APLE416269 APL_1293APL_1289APL_1287APL_1292APL_1291APL_1290APL_0742APL_1286APL_0657APL_0658
AHYD196024 AHA_3908AHA_3932AHA_3934AHA_3929AHA_3930AHA_3931AHA_3909AHA_3935AHA_3899AHA_3900
AEHR187272 MLG_2213MLG_2220MLG_2218MLG_2223MLG_2222MLG_2221MLG_2213MLG_2217MLG_2207MLG_2208
ABAU360910 BAV3326BAV3308BAV3311BAV3304BAV3305BAV3306BAV3326BAV3312BAV3333BAV3332


Organism features enriched in list (features available for 153 out of the 159 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00018581192
Arrangment:Singles 0.003874388286
Disease:Bubonic_plague 0.000303666
Disease:Dysentery 0.000303666
Disease:Gastroenteritis 0.00014961013
Disease:Legionnaire's_disease 0.004606944
Endospores:No 5.588e-829211
GC_Content_Range4:0-40 1.721e-2012213
GC_Content_Range4:40-60 4.133e-989224
GC_Content_Range4:60-100 0.000997852145
GC_Content_Range7:30-40 9.031e-1312166
GC_Content_Range7:50-60 1.825e-852107
GC_Content_Range7:60-70 0.000102852134
Genome_Size_Range5:0-2 6.177e-194155
Genome_Size_Range5:2-4 4.411e-630197
Genome_Size_Range5:4-6 3.941e-2196184
Genome_Size_Range5:6-10 0.00028812347
Genome_Size_Range9:1-2 1.897e-144128
Genome_Size_Range9:2-3 0.000210717120
Genome_Size_Range9:4-5 2.482e-84896
Genome_Size_Range9:5-6 4.831e-104888
Genome_Size_Range9:6-8 0.00001492238
Gram_Stain:Gram_Neg 7.150e-28141333
Habitat:Specialized 0.0034989653
Motility:No 1.177e-1012151
Motility:Yes 6.209e-12106267
Optimal_temp.:- 0.006941279257
Optimal_temp.:35-37 0.00014961013
Oxygen_Req:Anaerobic 1.593e-104102
Oxygen_Req:Facultative 2.292e-983201
Pathogenic_in:No 2.064e-636226
Pathogenic_in:Plant 0.00013451115
Shape:Coccus 9.005e-8482
Shape:Rod 4.885e-15130347
Shape:Spiral 0.0018461234
Temp._range:Mesophilic 0.0013209136473
Temp._range:Thermophilic 0.0002181135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 262
Effective number of orgs (counting one per cluster within 468 clusters): 202

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RSP357808 ncbi Roseiflexus sp. RS-10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RALB246199 Ruminococcus albus 80
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08031
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293281
FALN326424 ncbi Frankia alni ACN14a0
EFAE226185 ncbi Enterococcus faecalis V5830
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138260
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BSUB ncbi Bacillus subtilis subtilis 1681
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH0
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BCLA66692 ncbi Bacillus clausii KSM-K161
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7682   G7659   G7657   EG12801   EG12800   EG12799   EG11652   EG11358   EG10978   EG10977   
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068 TTE0158
TSP28240 TRQ2_0839
TSP1755 TETH514_0103
TROS309801
TPSE340099 TETH39_2100
TPET390874 TPET_0816
TPEN368408
TPAL243276
TMAR243274 TM_0108
TLET416591
TKOD69014
TFUS269800
TDEN243275
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159 STER_1123
STHE299768 STR1167
STHE292459 STH3304
STHE264199 STU1167
SSUI391296 SSU98_1186
SSUI391295 SSU05_1170
SSOL273057
SSAP342451 SSP0784
SPYO370554 MGAS10750_SPY0668
SPYO370553 MGAS2096_SPY0646
SPYO370552 MGAS10270_SPY0639
SPYO370551 MGAS9429_SPY0638
SPYO319701 M28_SPY0562
SPYO293653
SPYO286636 M6_SPY0601
SPYO198466 SPYM3_0502
SPYO193567
SPYO186103 SPYM18_0821
SPYO160490 SPY0763
SPNE488221 SP70585_2038
SPNE487214 SPH_2108
SPNE487213 SPT_1945
SPNE171101 SPR1781
SPNE170187 SPN09055
SPNE1313 SPJ_1959
SMUT210007 SMU_1525
SMAR399550
SHAE279808 SH0935
SGOR29390 SGO_0763
SERY405948 SACE_6866
SEPI176280 SE_1698
SEPI176279 SERP1706
SAVE227882 SAV5902
SAUR93062 SACOL2092
SAUR93061 SAOUHSC_02337
SAUR426430 NWMN_2004
SAUR418127 SAHV_2084
SAUR367830 SAUSA300_2055
SAUR359787 SAURJH1_2174
SAUR359786 SAURJH9_2136
SAUR282459 SAS2003
SAUR282458 SAR2188
SAUR273036 SAB1984C
SAUR196620 MW2024
SAUR158879 SA1902
SAUR158878
SARE391037
SALA317655 SALA_0499
SAGA211110 GBS0883
SAGA208435 SAG_0866
SAGA205921 SAK_0989
SACI330779
RXYL266117 RXYL_1636
RSP357808
RSAL288705
RCAS383372
RALB246199
PTOR263820
PTHE370438 PTH_1858
PRUM264731
PPEN278197
PMOB403833 PMOB_0031
PMAR59920 PMN2A_0895
PMAR167555 NATL1_17511
PISL384616
PINT246198 PIN_A2138
PHOR70601
PFUR186497
PDIS435591 BDI_2401
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OIHE221109 OB2972
NSEN222891 NSE_0697
NPHA348780
MTHE349307
MTHE264732 MOTH_2375
MTHE187420
MSYN262723
MSTA339860
MSP189918 MKMS_0986
MSP164757 MJLS_0996
MSP164756 MMCS_0968
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML1892
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_5099
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289 BCG_0704
MBOV233413 MB0674
MBAR269797
MART243272
MAEO419665
MACE188937
LXYL281090
LWEL386043 LWE2474
LSPH444177 BSPH_1019
LSAK314315 LSA1123
LREU557436
LPLA220668
LMON265669 LMOF2365_2499
LMON169963 LMO2526
LMES203120
LLAC272623 L134243
LLAC272622 LACR_0548
LJOH257314 LJ_0787
LINN272626 LIN2670
LHEL405566
LGAS324831 LGAS_0545
LDEL390333
LDEL321956
LCAS321967
LBRE387344 LVIS_1276
LACI272621
KRAD266940
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMAR272569
HBUT415426
HAUR316274
GTHE420246 GTNG_3289
GKAU235909 GK3341
GFOR411154 GFO_0623
FSP1855
FSP106370
FNUC190304 FN1520
FNOD381764
FMAG334413 FMG_1500
FALN326424
EFAE226185
DSP255470
DSP216389
DRAD243230
DGEO319795
DETH243164
CTRA471473 CTLON_0195
CTRA471472 CTL0195
CTET212717 CTC_00169
CSUL444179
CPNE182082 CPB1016
CPNE138677 CPJ0979
CPNE115713 CPN0979
CPNE115711 CP_0877
CPHY357809 CPHY_3879
CPER289380 CPR_2616
CPER195103 CPF_2933
CPER195102 CPE2606
CPEL335992 SAR11_0036
CNOV386415 NT01CX_0527
CMUR243161 TC_0210
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943 CKL_0127
CJEI306537 JK1711
CHUT269798 CHU_2986
CGLU196627 CG0736
CEFF196164
CDIP257309
CDIF272563 CD0123
CDES477974 DAUD_1433
CCUR360105 CCV52592_1433
CCON360104
CBOT536232 CLM_0203
CBOT515621
CBOT508765 CLL_A3552
CBOT498213 CLD_0626
CBOT441772 CLI_0214
CBOT441771 CLC_0207
CBOT441770 CLB_0196
CBOT36826 CBO0159
CBEI290402 CBEI_5062
CACE272562 CAC3539
BWEI315730 BCERKBAB4_5085
BTUR314724
BTHU412694 BALH_4792
BTHU281309 BT9727_4969
BSUB BSU36760
BPUM315750 BPUM_3321
BLON206672
BLIC279010 BL04004
BHER314723
BHAL272558
BGAR290434
BCLA66692 ABC3847
BCER572264 BCA_5432
BCER405917 BCE_5412
BCER315749 BCER98_3806
BCER288681 BCE33L4987
BCER226900 BC_5288
BBUR224326
BAPH372461 BCC_238
BANT592021 BAA_5557
BANT568206 BAMEG_5576
BANT261594 GBAA5529
BANT260799 BAS5137
BAMY326423 RBAM_033920
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667
APER272557
AORE350688 CLOS_2555
ANAE240017
AMET293826 AMET_0358
ALAI441768
AFUL224325
ACEL351607
AAUR290340


Organism features enriched in list (features available for 246 out of the 262 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 5.515e-96492
Arrangment:Clusters 3.063e-71717
Arrangment:Pairs 0.001237061112
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00006621111
Disease:Wide_range_of_infections 0.00006621111
Endospores:No 1.772e-18139211
Endospores:Yes 2.311e-124653
GC_Content_Range4:0-40 6.243e-16136213
GC_Content_Range4:40-60 8.245e-670224
GC_Content_Range4:60-100 0.000013540145
GC_Content_Range7:0-30 9.977e-83747
GC_Content_Range7:30-40 4.355e-899166
GC_Content_Range7:50-60 1.101e-820107
GC_Content_Range7:60-70 3.118e-732134
Genome_Size_Range5:0-2 9.536e-893155
Genome_Size_Range5:2-4 0.0000786104197
Genome_Size_Range5:4-6 3.674e-1044184
Genome_Size_Range5:6-10 9.251e-7547
Genome_Size_Range9:0-1 0.00002022227
Genome_Size_Range9:1-2 0.000231771128
Genome_Size_Range9:2-3 0.000012471120
Genome_Size_Range9:4-5 0.00002612396
Genome_Size_Range9:5-6 0.00005582188
Genome_Size_Range9:6-8 1.608e-6338
Gram_Stain:Gram_Neg 2.865e-6047333
Gram_Stain:Gram_Pos 1.210e-48137150
Habitat:Specialized 0.00014623553
Motility:No 7.551e-13101151
Motility:Yes 0.000023489267
Optimal_temp.:- 0.000012884257
Optimal_temp.:30-37 1.239e-71818
Oxygen_Req:Aerobic 9.239e-752185
Oxygen_Req:Anaerobic 5.461e-1071102
Pathogenic_in:Animal 0.00154191766
Pathogenic_in:No 0.0092856107226
Salinity:Non-halophilic 0.002562557106
Shape:Coccus 5.668e-126382
Shape:Irregular_coccus 3.063e-71717
Shape:Rod 2.949e-11108347
Shape:Sphere 0.00015311619
Temp._range:Hyperthermophilic 7.342e-72123
Temp._range:Mesophilic 0.0012946186473
Temp._range:Thermophilic 2.513e-62835



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 19
Effective number of orgs (counting one per cluster within 468 clusters): 15

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-1 0.0006888122410
NEUR228410 ncbi Nitrosomonas europaea ATCC 19718 0.0012904130310
NEUT335283 ncbi Nitrosomonas eutropha C91 0.0013513130910
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 1 0.0016963133910
LPNE297245 ncbi Legionella pneumophila Lens 0.0018829135310
HDUC233412 ncbi Haemophilus ducreyi 35000HP 0.0019252135610
LPNE400673 ncbi Legionella pneumophila Corby 0.0019539135810
LPNE297246 ncbi Legionella pneumophila Paris 0.0020124136210
NOCE323261 ncbi Nitrosococcus oceani ATCC 19707 0.0021656137210
NMUL323848 ncbi Nitrosospira multiformis ATCC 25196 0.0022791137910
HHAL349124 ncbi Halorhodospira halophila SL1 0.0022957138010
HINF374930 ncbi Haemophilus influenzae PittEE 0.0053343150110
MFLA265072 ncbi Methylobacillus flagellatus KT 0.0053701150210
TDEN292415 ncbi Thiobacillus denitrificans ATCC 25259 0.0055152150610
MCAP243233 ncbi Methylococcus capsulatus Bath 0.0056264150910
HSOM205914 ncbi Haemophilus somnus 129PT 0.0063787152810
HSOM228400 ncbi Haemophilus somnus 2336 0.0082659156810
HINF281310 ncbi Haemophilus influenzae 86-028NP 0.0088662157910
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-1 0.0096869159310


Names of the homologs of the genes in the group in each of these orgs
  G7682   G7659   G7657   EG12801   EG12800   EG12799   EG11652   EG11358   EG10978   EG10977   
PSP312153 PNUC_0123PNUC_0100PNUC_0104PNUC_0096PNUC_0097PNUC_0098PNUC_0123PNUC_0105PNUC_0129PNUC_0128
NEUR228410 NE1508NE2381NE2377NE2384NE2383NE2382NE1508NE1852NE0813NE0812
NEUT335283 NEUT_1685NEUT_0854NEUT_0858NEUT_0851NEUT_0852NEUT_0853NEUT_1685NEUT_1556NEUT_1114NEUT_1113
LPNE272624 LPG1331LPG0844LPG0846LPG0841LPG0842LPG0843LPG1331LPG0847LPG2701LPG2702
LPNE297245 LPL1284LPL0875LPL0877LPL0872LPL0873LPL0874LPL1284LPL0878LPL2629LPL2630
HDUC233412 HD_0260HD_0256HD_0254HD_0259HD_0258HD_0257HD_1350HD_0253HD_1426HD_1425
LPNE400673 LPC_0747LPC_2451LPC_2449LPC_2454LPC_2453LPC_2452LPC_0747LPC_2448LPC_0434LPC_0433
LPNE297246 LPP1285LPP0906LPP0908LPP0903LPP0904LPP0905LPP1285LPP0909LPP2756LPP2757
NOCE323261 NOC_2139NOC_2782NOC_2387NOC_2786NOC_2785NOC_2784NOC_2139NOC_2780NOC_0295NOC_0296
NMUL323848 NMUL_A0510NMUL_A2746NMUL_A2742NMUL_A2749NMUL_A2748NMUL_A2747NMUL_A0510NMUL_A0886NMUL_A1001NMUL_A1002
HHAL349124 HHAL_2110HHAL_2117HHAL_2115HHAL_2120HHAL_2119HHAL_2118HHAL_2110HHAL_2114HHAL_2105HHAL_2106
HINF374930 CGSHIEE_04045CGSHIEE_06645CGSHIEE_06655CGSHIEE_06630CGSHIEE_06635CGSHIEE_06640CGSHIEE_07240CGSHIEE_06660CGSHIEE_04800CGSHIEE_04805
MFLA265072 MFLA_0261MFLA_0240MFLA_0244MFLA_0237MFLA_0238MFLA_0239MFLA_0261MFLA_0246MFLA_0264MFLA_0263
TDEN292415 TBD_1834TBD_1896TBD_1892TBD_1900TBD_1899TBD_1898TBD_1834TBD_1891TBD_1829TBD_1830
MCAP243233 MCA_2343MCA_2792MCA_0260MCA_1969MCA_1968MCA_1967MCA_2343MCA_1965MCA_1958MCA_1959
HSOM205914 HS_0816HS_1170HS_1168HS_1173HS_1172HS_1171HS_1049HS_1167HS_0755HS_0754
HSOM228400 HSM_1285HSM_1587HSM_1585HSM_1590HSM_1589HSM_1588HSM_1533HSM_1584HSM_1222HSM_1221
HINF281310 NTHI1905NTHI1247NTHI1245NTHI1250NTHI1249NTHI1248NTHI1116NTHI1244NTHI1690NTHI1689
AEHR187272 MLG_2213MLG_2220MLG_2218MLG_2223MLG_2222MLG_2221MLG_2213MLG_2217MLG_2207MLG_2208


Organism features enriched in list (features available for 19 out of the 19 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Legionnaire's_disease 8.136e-744
Disease:and_reproductive_problems 0.001007922
Disease:arthritis 0.001007922
Disease:chronic_bronchitis 0.002935323
Disease:myocarditis 0.001007922
Disease:otitis_media 0.005698624
Disease:sinusitis 0.005698624
Endospores:No 0.00187231211
Genome_Size_Range5:2-4 5.800e-616197
Genome_Size_Range9:3-4 0.0012195877
Gram_Stain:Gram_Neg 0.002038717333
Optimal_temp.:35-37 0.0004585413



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))1201010.6570
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181400.6512
GLYCOCAT-PWY (glycogen degradation I)2461450.6192
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001550.5779
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951220.5735
PWY-5918 (heme biosynthesis I)2721430.5462
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251280.5409
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761110.5404
PWY-1269 (CMP-KDO biosynthesis I)3251560.5384
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911160.5370
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861450.5320
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149990.5262
PWY-5386 (methylglyoxal degradation I)3051490.5241
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901450.5240
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911450.5220
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961460.5194
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81680.5181
GLUCONSUPER-PWY (D-gluconate degradation)2291260.5159
PWY-4041 (γ-glutamyl cycle)2791400.5093
GALACTITOLCAT-PWY (galactitol degradation)73630.5079
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491300.4995
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491300.4995
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481560.4981
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391530.4914
PWY-5148 (acyl-CoA hydrolysis)2271220.4901
GLUCARDEG-PWY (D-glucarate degradation I)152950.4818
PWY-5913 (TCA cycle variation IV)3011420.4802
PWY0-981 (taurine degradation IV)106760.4796
TYRFUMCAT-PWY (tyrosine degradation I)1841050.4684
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831030.4550
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96690.4538
PWY0-1182 (trehalose degradation II (trehalase))70560.4446
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94670.4424
LIPASYN-PWY (phospholipases)2121100.4343
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135830.4338
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911030.4332
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291420.4280
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50440.4233
PWY-6196 (serine racemization)102680.4176
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135810.4159
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138820.4147
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301130.4143
PWY-6134 (tyrosine biosynthesis IV)89620.4133
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001320.4085
PWY-561 (superpathway of glyoxylate cycle)162900.4084
GALACTARDEG-PWY (D-galactarate degradation I)151860.4078
DAPLYSINESYN-PWY (lysine biosynthesis I)3421420.4048
GLYOXYLATE-BYPASS (glyoxylate cycle)169920.4047
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981540.4018



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7659   G7657   EG12801   EG12800   EG12799   EG11652   EG11358   EG10978   EG10977   
G76820.9990890.9992250.9989260.9988930.9990380.9998160.9991510.9992120.999215
G76590.999720.999760.9998040.9998350.9992620.9996370.9988730.998848
G76570.9996370.9996520.9996970.999430.9998340.9989820.99892
EG128010.9999490.9998270.9991790.999520.9988880.99883
EG128000.999880.999170.9995110.9989250.998854
EG127990.9992860.9996140.9989430.998913
EG116520.9993740.9993860.999396
EG113580.9990590.998896
EG109780.999882
EG10977



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PAIRWISE BLAST SCORES:

  G7682   G7659   G7657   EG12801   EG12800   EG12799   EG11652   EG11358   EG10978   EG10977   
G76820.0f0---------
G7659-0.0f0--------
G7657--0.0f0-------
EG12801---0.0f0------
EG12800----0.0f0-----
EG12799-----0.0f0----
EG116525.7e-48-----0.0f0---
EG11358-------0.0f0--
EG10978--------0.0f0-
EG10977---------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-45-CPLX (phospholipid ABC transporter) (degree of match pw to cand: 0.800, degree of match cand to pw: 0.400, average score: 0.999)
  Genes in pathway or complex:
             0.9980 0.9964 G7658 (mlaB) G7658-MONOMER (MlaB)
   *in cand* 0.9995 0.9989 EG12799 (mlaD) EG12799-MONOMER (MlaD)
   *in cand* 0.9995 0.9989 EG12800 (mlaE) YRBE-MONOMER (MlaE)
   *in cand* 0.9995 0.9988 EG12801 (mlaF) YRBF-MONOMER (MlaF)
   *in cand* 0.9995 0.9988 G7659 (mlaC) G7659-MONOMER (MlaC)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9992 0.9988 EG10977 (sspA) EG10977-MONOMER (stringent starvation protein A)
   *in cand* 0.9992 0.9989 EG10978 (sspB) EG10978-MONOMER (SspB)
   *in cand* 0.9995 0.9989 EG11358 (murA) UDPNACETYLGLUCOSAMENOLPYRTRANS-MONOMER (UDP-N-acetylglucosamine enolpyruvoyl transferase)
   *in cand* 0.9994 0.9992 EG11652 (degS) EG11652-MONOMER (DegS serine endoprotease)
   *in cand* 0.9995 0.9989 G7657 (yrbA) G7657-MONOMER (predicted DNA-binding transcriptional regulator)
   *in cand* 0.9993 0.9989 G7682 (degQ) G7682-MONOMER (serine endoprotease, periplasmic)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10977 EG10978 EG11652 G7682 (centered at G7682)
EG11358 EG12799 EG12800 EG12801 G7657 G7659 (centered at EG12799)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7682   G7659   G7657   EG12801   EG12800   EG12799   EG11652   EG11358   EG10978   EG10977   
264/623212/623208/623306/623317/623240/623234/623397/623187/623235/623
AAEO224324:0:Tyes---8320-----
AAVE397945:0:Tyes-48012-926292630
ABAC204669:0:Tyes---786785-11960--
ABAU360910:0:Tyes22470122282928
ABOR393595:0:Tyes26001---722423
ABUT367737:0:Tyes19851332--0-19851729--
ACAU438753:0:Tyes0--10921091-14082037--
ACRY349163:8:Tyes114650-285927110-1336--
ADEH290397:0:Tyes1423--27981516--0--
AEHR187272:0:Tyes6131116151461001
AFER243159:0:Tyes-27552275827572756-027262697
AHYD196024:0:Tyes93335303132103601
AMAR234826:0:Tyes----8200----
AMAR329726:9:Tyes--391913613264-31030-4362
AMET293826:0:Tyes-------0--
AORE350688:0:Tyes-------0--
APHA212042:0:Tyes----037----
APLE416269:0:Tyes6426386366416406398563501
APLE434271:0:Tno6656616596646636629165801
ASAL382245:5:Tyes26316542503534
ASP232721:2:Tyes364901236104544
ASP62928:0:Tyes25764801225769161160
ASP62977:0:Tyes180124040240724062405657121862185
ASP76114:2:Tyes104959272807978567101
AVAR240292:3:Tyes--020931105--852-4440
BABO262698:1:Tno321--702--8800-540
BAMB339670:3:Tno25480122593130
BAMB398577:3:Tno25480122593130
BAMY326423:0:Tyes-------0--
BANT260799:0:Tno-------0--
BANT261594:2:Tno-------0--
BANT568206:2:Tyes-------0--
BANT592021:2:Tno-------0--
BAPH198804:0:Tyes0-151----152--
BAPH372461:0:Tyes--0-------
BBAC264462:0:Tyes--114477828263089-0-2931
BBAC360095:0:Tyes216-----4870--
BBRO257310:0:Tyes0111411171110111111121133111811401139
BCAN483179:1:Tno354--751--9440-577
BCEN331271:2:Tno6272331302962201
BCEN331272:3:Tyes25480122593130
BCER226900:1:Tyes-------0--
BCER288681:0:Tno-------0--
BCER315749:1:Tyes-------0--
BCER405917:1:Tyes-------0--
BCER572264:1:Tno-------0--
BCIC186490:0:Tyes2-0---21--
BCLA66692:0:Tyes-------0--
BFRA272559:1:Tyes----1123-0---
BFRA295405:0:Tno----1354-0---
BHEN283166:0:Tyes0-----512873--
BJAP224911:0:Fyes915--15821754-915--0
BLIC279010:0:Tyes-------0--
BMAL243160:1:Tno6282332313062201
BMAL320388:1:Tno26480122693231
BMAL320389:1:Tyes6282432313062301
BMEL224914:1:Tno561--184--0899-350
BMEL359391:1:Tno316--684--8540-526
BOVI236:1:Tyes299--649--8120--
BPAR257311:0:Tno0941944937938939960945967966
BPER257313:0:Tyes1939316331653159316031617316601
BPET94624:0:Tyes7262330292872201
BPSE272560:1:Tyes6272331302962201
BPSE320372:1:Tno6272331302962201
BPSE320373:1:Tno6272331302962201
BPUM315750:0:Tyes-------0--
BQUI283165:0:Tyes0-----359645--
BSP107806:2:Tyes0-153---0154--
BSP36773:2:Tyes25480122593130
BSP376:0:Tyes0--22802485-18593756-801
BSUB:0:Tyes-------0--
BSUI204722:1:Tyes340--742--9260-566
BSUI470137:1:Tno350--763--9500-582
BTHA271848:1:Tno6272331302962201
BTHE226186:0:Tyes----2573-0---
BTHU281309:1:Tno-------0--
BTHU412694:1:Tno-------0--
BTRI382640:1:Tyes0------1117--
BVIE269482:7:Tyes25480122593130
BWEI315730:4:Tyes-------0--
BXEN266265:0:Tyes---------0
BXEN266265:1:Tyes-0--------
CABO218497:0:Tyes154---0-----
CACE272562:1:Tyes-------0--
CAULO:0:Tyes451--013991398-33-170
CBEI290402:0:Tyes-------0--
CBLO203907:0:Tyes2-0---21--
CBLO291272:0:Tno2-0---21--
CBOT36826:1:Tno-------0--
CBOT441770:0:Tyes-------0--
CBOT441771:0:Tno-------0--
CBOT441772:1:Tno-------0--
CBOT498213:1:Tno-------0--
CBOT508765:1:Tyes-------0--
CBOT536232:0:Tno-------0--
CBUR227377:1:Tyes169-0142---16511171118
CBUR360115:1:Tno460-0487---46511671168
CBUR434922:2:Tno492-1173466---48710
CCAV227941:1:Tyes153---0-----
CCHL340177:0:Tyes15--01--807--
CCUR360105:0:Tyes----0-----
CDES477974:0:Tyes-------0--
CDIF272563:1:Tyes-------0--
CFEL264202:1:Tyes0---151-----
CFET360106:0:Tyes----0--397--
CGLU196627:0:Tyes---0------
CHOM360107:1:Tyes-0-249---583--
CHUT269798:0:Tyes----0-----
CHYD246194:0:Tyes---2294--02410--
CJAP155077:0:Tyes961117211710--116611701157-
CJEI306537:0:Tyes---0------
CJEJ192222:0:Tyes0147--407-----
CJEJ195099:0:Tno0197--438-----
CJEJ354242:2:Tyes0128--383-----
CJEJ360109:0:Tyes2050--1623-----
CJEJ407148:0:Tno378500--761--0--
CKLU431943:1:Tyes-------0--
CMUR243161:1:Tyes0---------
CNOV386415:0:Tyes-------0--
CPEL335992:0:Tyes-0--------
CPER195102:1:Tyes-------0--
CPER195103:0:Tno-------0--
CPER289380:3:Tyes-------0--
CPHY357809:0:Tyes-------0--
CPNE115711:1:Tyes0---------
CPNE115713:0:Tno0---------
CPNE138677:0:Tno0---------
CPNE182082:0:Tno0---------
CPRO264201:0:Fyes0---467-0---
CPSY167879:0:Tyes018618418918818711838990
CRUT413404:0:Tyes--115----561-0
CSAL290398:0:Tyes7131116151471001
CSP501479:5:Fyes---------0
CSP501479:6:Fyes----48--0--
CSP501479:7:Fyes-0--------
CSP501479:8:Fyes---1381-0----
CSP78:2:Tyes23470-201021-2049-1879
CTEP194439:0:Tyes1102--01-1102---
CTET212717:0:Tyes-------0--
CTRA471472:0:Tyes0---------
CTRA471473:0:Tno0---------
CVES412965:0:Tyes-523-----52401
CVIO243365:0:Tyes-701098-136633664
DARO159087:0:Tyes2572259925952603260226012572259410
DDES207559:0:Tyes-1784-178217811783-0--
DHAF138119:0:Tyes------0656--
DNOD246195:0:Tyes476-987-301
DOLE96561:0:Tyes18161272-0--18161547--
DPSY177439:2:Tyes0--15671568156602017--
DRED349161:0:Tyes---2465--02404--
DSHI398580:3:Tyes0---------
DSHI398580:5:Tyes-0-227722761270-853--
DVUL882:1:Tyes2250-231-2005--
ECAN269484:0:Tyes----078----
ECAR218491:0:Tyes835012761413
ECHA205920:0:Tyes----094----
ECOL199310:0:Tno42518764303435
ECOL316407:0:Tno46316544704041
ECOL331111:6:Tno42518764303637
ECOL362663:0:Tno39316544003233
ECOL364106:1:Tno42518764303435
ECOL405955:2:Tyes36215433703031
ECOL409438:6:Tyes40316544103435
ECOL413997:0:Tno40316544103435
ECOL439855:4:Tno45316544603839
ECOL469008:0:Tno1384035363704176
ECOL481805:0:Tno1373934353604076
ECOL585034:0:Tno40316544103435
ECOL585035:0:Tno38316543903233
ECOL585055:0:Tno40316544103435
ECOL585056:2:Tno40316544103435
ECOL585057:0:Tno41316544203435
ECOL585397:0:Tno38316543903233
ECOL83334:0:Tno39316544003334
ECOLI:0:Tno46316544704041
ECOO157:0:Tno39316544003334
EFER585054:1:Tyes40316544103334
ELIT314225:0:Tyes----0--2232--
ERUM254945:0:Tyes----079----
ERUM302409:0:Tno----076----
ESP42895:1:Tyes44316544503839
FJOH376686:0:Tyes---43374336-0---
FMAG334413:1:Tyes-------0--
FNUC190304:0:Tyes-------0--
FPHI484022:1:Tyes-222224219220221--11550
FRANT:0:Tno-1072107410701071---7500
FSUC59374:0:Tyes---566567--0--
FTUL351581:0:Tno-20543--584959
FTUL393011:0:Tno-20543--536861
FTUL393115:0:Tyes-1053105510511052---7450
FTUL401614:0:Tyes-20543--961224
FTUL418136:0:Tno-20543--2151076
FTUL458234:0:Tno-20543--554887
GBET391165:0:Tyes12860-124920151531-832--
GFOR411154:0:Tyes0---------
GKAU235909:1:Tyes-------0--
GMET269799:1:Tyes3067408-4114124106390--
GOXY290633:5:Tyes480-1367185365674100--
GSUL243231:0:Tyes0--73173273003006--
GTHE420246:1:Tyes-------0--
GURA351605:0:Tyes32384-10232383002--
GVIO251221:0:Tyes--263423310--1329-82
HACI382638:1:Tyes0-----0---
HARS204773:0:Tyes8282432313082301
HCHE349521:0:Tyes0-40384043404240414032403646084609
HDUC233412:0:Tyes731654960010281027
HHAL349124:0:Tyes512101514135901
HHEP235279:0:Tyes0-----0---
HINF281310:0:Tyes6861091071121111100106501500
HINF374930:0:Tyes0449451446447448552452131132
HINF71421:0:Tno3051331311361351340130483484
HMOD498761:0:Tyes------1190--
HNEP81032:0:Tyes580--2154015021887610-1640
HPY:0:Tno0---456-0---
HPYL357544:1:Tyes0---1046-0---
HPYL85963:0:Tno0---946-0---
HSOM205914:1:Tyes6241841642142041929741510
HSOM228400:0:Tno6236836637137036931336510
ILOI283942:0:Tyes835012761716
JSP290400:1:Tyes---3013021299-1469-0
JSP375286:0:Tyes8282432313082301
KPNE272620:2:Tyes34316543502829
LBIF355278:2:Tyes---382381----0
LBIF456481:2:Tno---388387----0
LBOR355276:1:Tyes---01-895---
LBOR355277:1:Tno---10501049-0---
LBRE387344:2:Tyes-------0--
LCHO395495:0:Tyes676248265524862485248467665610
LGAS324831:0:Tyes---0------
LINN272626:1:Tno-------0--
LINT189518:1:Tyes---01-----
LINT267671:1:Tno---10-----
LINT363253:3:Tyes115--102115605--
LJOH257314:0:Tyes---0------
LLAC272622:5:Tyes-------0--
LLAC272623:0:Tyes-------0--
LMON169963:0:Tno-------0--
LMON265669:0:Tyes-------0--
LPNE272624:0:Tno48935012489618561857
LPNE297245:1:Fno40835012408617531754
LPNE297246:1:Fyes38335012383618571858
LPNE400673:0:Tno30619761974197919781977306197310
LSAK314315:0:Tyes-------0--
LSPH444177:1:Tyes-------0--
LWEL386043:0:Tyes-------0--
MABS561007:1:Tyes---0-693----
MAER449447:0:Tyes--41090616--5680-997
MAQU351348:2:Tyes0444442447446445-441204205
MAVI243243:0:Tyes---3796-0----
MBOV233413:0:Tno---0------
MBOV410289:0:Tno---0------
MCAP243233:0:Tyes1967239601610160916081967160615991600
MEXT419610:0:Tyes2222-0877876-38201990--
MFLA265072:0:Tyes24370122492726
MGIL350054:3:Tyes---0------
MLEP272631:0:Tyes---0------
MLOT266835:2:Tyes6063--591592-2075067-0
MMAG342108:0:Tyes31613154178501763241231501651-3611
MMAR394221:0:Tyes822--18821883-16481006-0
MPET420662:1:Tyes16226202266226522641612524
MSME246196:0:Tyes---1011-0----
MSP164756:1:Tno---0------
MSP164757:0:Tno---0------
MSP189918:2:Tyes---0------
MSP266779:3:Tyes707--13611360-14720--
MSP400668:0:Tyes0-13311335133413331326133013191320
MSP409:2:Tyes5647-047214720--2506-4845
MSUC221988:0:Tyes0734732737736735387731288289
MTBCDC:0:Tno---0-1400----
MTBRV:0:Tno---0-1325----
MTHE264732:0:Tyes-------0--
MTUB336982:0:Tno---0-1322----
MTUB419947:0:Tyes---0-1363----
MVAN350058:0:Tyes---332-0----
MXAN246197:0:Tyes9421658016351634--2786-1942
NARO279238:0:Tyes2928--24352436-29280--
NEUR228410:0:Tyes70615931589159615951594706105510
NEUT335283:2:Tyes82837012828697257256
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