CANDIDATE ID: 117

CANDIDATE ID: 117

NUMBER OF GENES: 10
AVERAGE SCORE:    9.9930416e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    4.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12153 (narU) (b1469)
   Products of gene:
     - NARU-MONOMER (NarU MFS nitrate/nitrite antiporter)
       Reactions:
        nitrite[cytosol] + H+[periplasmic space]  ->  nitrite[periplasmic space] + H+[cytosol]
        nitrate[periplasmic space] + nitrite[cytosol]  ->  nitrate[cytosol] + nitrite[periplasmic space]

- EG10648 (narZ) (b1468)
   Products of gene:
     - NARZ-MONOMER (nitrate reductase Z, α subunit)
     - NITRATREDUCTZ-CPLX (nitrate reductase Z)
       Reactions:
        a menaquinol + nitrate + 2 H+  ->  a menaquinone + nitrite + H2O + 2 H+[periplasmic space]
         In pathways
         PWY-5673 (PWY-5673)
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1352 (NADH to nitrate electron transfer)

- EG10646 (narX) (b1222)
   Products of gene:
     - NARX-MONOMER (NarX)
     - PHOSPHO-NARX (NarX-Phis)
     - NARX-CPLX (NarX)

- EG10645 (narW) (b1466)
   Products of gene:
     - NARW-MONOMER (NarW, probable private chaperone for NarZ nitrate reductase subunit)

- EG10643 (narL) (b1221)
   Products of gene:
     - NARL-MONOMER (NarL)
     - PHOSPHO-NARL (NarL-Phosphorylated transcriptional dual regulator)
       Regulatees:
        TU0-5481 (ynfEFGH-dmsD)
        TU0-14739 (ogt)
        TU0-14675 (ydhYVWXUT)
        TU-8441 (ytfE)
        TU0-13407 (yeaR-yoaG)
        TU0-8347 (dcuSR)
        TU0-4441 (norVW)
        TU00369 (ubiCA)
        TU0-7021 (hcp-hcr)
        TU00254 (cydDC)
        TU00212 (torCAD)
        TU00199 (nrfABCDEFG)
        TU0-6021 (aspA-dcuA)
        TU00160 (aspA)
        TU00157 (fdnGHI)
        TU00152 (fdhF)
        TU00310 (nuoABCEFGHIJKLMN)
        TU00302 (moeAB)
        TU00288 (hyaABCDEF)
        TU00379 (focA-pflB)
        TU00377 (focA-pflB)
        TU141 (caiF)
        TU00289 (hybOABCDEFG)
        TU363 (napFDAGHBC-ccmABCDEFGH)
        TU546 (adhE)
        TU00468 (dcuB-fumB)
        TU00198 (adhE)
        TU00305 (napFDAGHBC-ccmABCDEFGH)
        TU00308 (nikABCDER)
        TU00019 (dmsABC)
        TU00023 (frdABCD)
        TU00046 (nirBDC-cysG)
        TU00045 (narK)
        TU00044 (narGHJI)

- EG10642 (narK) (b1223)
   Products of gene:
     - NARK-MONOMER (NarK MFS nitrate/nitrite antiporter)
       Reactions:
        nitrite[periplasmic space]  ->  nitrite[cytosol]
        nitrate[periplasmic space] + nitrite[cytosol]  ->  nitrate[cytosol] + nitrite[periplasmic space]
        nitrite[cytosol] + H+[periplasmic space]  ->  nitrite[periplasmic space] + H+[cytosol]

- EG10641 (narJ) (b1226)
   Products of gene:
     - NARJ-MONOMER (molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1)

- EG10640 (narI) (b1227)
   Products of gene:
     - NARI-MONOMER (nitrate reductase A, γ subunit)
     - NITRATREDUCTA-CPLX (nitrate reductase A)
       Reactions:
        a menaquinol + nitrate + 2 H+  ->  a menaquinone + nitrite + H2O + 2 H+[periplasmic space]
         In pathways
         PWY-5673 (PWY-5673)
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1352 (NADH to nitrate electron transfer)

- EG10639 (narH) (b1225)
   Products of gene:
     - NARH-MONOMER (nitrate reductase A, β subunit)
     - CPLX0-3261 (NarGH catalytic dimer of nitrate reductase A)
     - NITRATREDUCTA-CPLX (nitrate reductase A)
       Reactions:
        a menaquinol + nitrate + 2 H+  ->  a menaquinone + nitrite + H2O + 2 H+[periplasmic space]
         In pathways
         PWY-5673 (PWY-5673)
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1352 (NADH to nitrate electron transfer)

- EG10638 (narG) (b1224)
   Products of gene:
     - NARG-MONOMER (nitrate reductase A, α subunit)
     - CPLX0-3261 (NarGH catalytic dimer of nitrate reductase A)
     - NITRATREDUCTA-CPLX (nitrate reductase A)
       Reactions:
        a menaquinol + nitrate + 2 H+  ->  a menaquinone + nitrite + H2O + 2 H+[periplasmic space]
         In pathways
         PWY-5673 (PWY-5673)
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1352 (NADH to nitrate electron transfer)



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 105
Effective number of orgs (counting one per cluster within 468 clusters): 61

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
TDEN292415 ncbi Thiobacillus denitrificans ATCC 2525910
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT210
STRO369723 ncbi Salinispora tropica CNB-4409
SSON300269 ncbi Shigella sonnei Ss04610
SSED425104 ncbi Shewanella sediminis HAW-EB310
SPRO399741 ncbi Serratia proteamaculans 56810
SHIGELLA ncbi Shigella flexneri 2a str. 2457T10
SHAL458817 ncbi Shewanella halifaxensis HAW-EB410
SFLE373384 ncbi Shigella flexneri 5 str. 840110
SFLE198214 ncbi Shigella flexneri 2a str. 30110
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47610
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915010
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1810
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty210
SDYS300267 ncbi Shigella dysenteriae Sd19710
SCO ncbi Streptomyces coelicolor A3(2)9
SBOY300268 ncbi Shigella boydii Sb22710
SARE391037 ncbi Salinispora arenicola CNS-2059
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99419
RSOL267608 ncbi Ralstonia solanacearum GMI100010
RMET266264 ncbi Ralstonia metallidurans CH3410
RFER338969 ncbi Rhodoferax ferrireducens T11810
REUT381666 ncbi Ralstonia eutropha H1610
REUT264198 ncbi Ralstonia eutropha JMP13410
PSTU379731 ncbi Pseudomonas stutzeri A150110
PSP296591 ncbi Polaromonas sp. JS66610
PNAP365044 ncbi Polaromonas naphthalenivorans CJ210
PARC259536 ncbi Psychrobacter arcticus 273-410
PAER208964 ncbi Pseudomonas aeruginosa PAO110
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA1410
PACN267747 ncbi Propionibacterium acnes KPA1712029
OCAR504832 ncbi Oligotropha carboxidovorans OM59
OANT439375 ncbi Ochrobactrum anthropi ATCC 491889
NSP35761 Nocardioides sp.9
NFAR247156 ncbi Nocardia farcinica IFM 101529
MSP409 Methylobacterium sp.9
MSP189918 ncbi Mycobacterium sp. KMS9
MSP164757 ncbi Mycobacterium sp. JLS9
MSP164756 ncbi Mycobacterium sp. MCS9
MSME246196 ncbi Mycobacterium smegmatis MC2 1559
MPET420662 ncbi Methylibium petroleiphilum PM19
MAQU351348 ncbi Marinobacter aquaeolei VT810
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857810
HCHE349521 ncbi Hahella chejuensis KCTC 239610
HARS204773 ncbi Herminiimonas arsenicoxydans10
ESP42895 Enterobacter sp.10
EFER585054 ncbi Escherichia fergusonii ATCC 3546910
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H710
ECOL585397 ncbi Escherichia coli ED1a10
ECOL585057 ncbi Escherichia coli IAI3910
ECOL585056 ncbi Escherichia coli UMN02610
ECOL585055 ncbi Escherichia coli 5598910
ECOL585035 ncbi Escherichia coli S8810
ECOL585034 ncbi Escherichia coli IAI110
ECOL481805 ncbi Escherichia coli ATCC 873910
ECOL469008 ncbi Escherichia coli BL21(DE3)10
ECOL439855 ncbi Escherichia coli SMS-3-510
ECOL413997 ncbi Escherichia coli B str. REL60610
ECOL409438 ncbi Escherichia coli SE1110
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8910
ECOL362663 ncbi Escherichia coli 53610
ECOL331111 ncbi Escherichia coli E24377A10
ECOL316407 ncbi Escherichia coli K-12 substr. W311010
ECOL199310 ncbi Escherichia coli CFT07310
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104310
DHAF138119 ncbi Desulfitobacterium hafniense Y519
CVIO243365 ncbi Chromobacterium violaceum ATCC 1247210
BWEI315730 ncbi Bacillus weihenstephanensis KBAB49
BVIE269482 ncbi Burkholderia vietnamiensis G410
BTHU412694 ncbi Bacillus thuringiensis Al Hakam9
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-279
BTHA271848 ncbi Burkholderia thailandensis E26410
BSUI470137 ncbi Brucella suis ATCC 234459
BSUI204722 ncbi Brucella suis 13309
BSUB ncbi Bacillus subtilis subtilis 1689
BPSE320373 ncbi Burkholderia pseudomallei 66810
BPSE320372 ncbi Burkholderia pseudomallei 1710b10
BPSE272560 ncbi Burkholderia pseudomallei K9624310
BPET94624 Bordetella petrii10
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M9
BMAL320389 ncbi Burkholderia mallei NCTC 1024710
BMAL320388 ncbi Burkholderia mallei SAVP110
BMAL243160 ncbi Burkholderia mallei ATCC 2334410
BLIC279010 ncbi Bacillus licheniformis ATCC 145809
BCER572264 ncbi Bacillus cereus 03BB1029
BCER315749 ncbi Bacillus cytotoxicus NVH 391-989
BCER288681 ncbi Bacillus cereus E33L9
BCER226900 ncbi Bacillus cereus ATCC 145799
BCAN483179 ncbi Brucella canis ATCC 233659
BANT592021 ncbi Bacillus anthracis A02489
BANT568206 ncbi Bacillus anthracis CDC 6849
BANT261594 ncbi Bacillus anthracis Ames Ancestor9
BANT260799 ncbi Bacillus anthracis Sterne9
BAMY326423 ncbi Bacillus amyloliquefaciens FZB429
BAMB398577 ncbi Burkholderia ambifaria MC40-610
BAMB339670 ncbi Burkholderia ambifaria AMMD10
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9419
ASP76114 ncbi Aromatoleum aromaticum EbN110
ASP232721 ncbi Acidovorax sp. JS4210
ASP1667 Arthrobacter sp.9
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-110
AAVE397945 ncbi Acidovorax citrulli AAC00-19


Names of the homologs of the genes in the group in each of these orgs
  EG12153   EG10648   EG10646   EG10645   EG10643   EG10642   EG10641   EG10640   EG10639   EG10638   
TDEN292415 TBD_1402TBD_1403TBD_1400TBD_1405TBD_1399TBD_1402TBD_1405TBD_1406TBD_1404TBD_1403
STYP99287 STM1765STM1764STM1766STM1579STM1767STM1765STM1762STM1761STM1763STM1764
STRO369723 STROP_0175STROP_0177STROP_1578STROP_1796STROP_3865STROP_0179STROP_0180STROP_0178STROP_0177
SSON300269 SSO_1953SSO_1952SSO_1955SSO_1659SSO_1956SSO_1953SSO_1950SSO_1949SSO_1951SSO_1952
SSED425104 SSED_1953SSED_1954SSED_0930SSED_1956SSED_1951SSED_1953SSED_1956SSED_1957SSED_1955SSED_1954
SPRO399741 SPRO_2898SPRO_2883SPRO_2899SPRO_2881SPRO_2900SPRO_2898SPRO_2881SPRO_2880SPRO_2882SPRO_2883
SHIGELLA NARUNARGNARXNARJNARLNARUNARJNARINARHNARG
SHAL458817 SHAL_3439SHAL_3440SHAL_0175SHAL_0179SHAL_0174SHAL_3439SHAL_0179SHAL_3443SHAL_3441SHAL_3440
SFLE373384 SFV_1239SFV_1240SFV_1238SFV_1242SFV_1237SFV_1239SFV_1242SFV_1243SFV_1241SFV_1240
SFLE198214 AAN43332.1AAN42840.1AAN42838.1AAN42842.1AAN42837.1AAN43332.1AAN42842.1AAN42843.1AAN43333.1AAN42840.1
SENT454169 SEHA_C1960SEHA_C1959SEHA_C1961SEHA_C1757SEHA_C1962SEHA_C1960SEHA_C1957SEHA_C1956SEHA_C1958SEHA_C1959
SENT321314 SCH_1759SCH_1758SCH_1760SCH_1578SCH_1761SCH_1759SCH_1756SCH_1755SCH_1757SCH_1758
SENT295319 SPA1292SPA1291SPA1107SPA1111SPA1106SPA1292SPA1111SPA1112SPA1290SPA1291
SENT220341 STY1489STY1488STY1286STY1486STY1285STY1489STY1290STY1291STY1487STY1488
SENT209261 T1674T1673T1676T1671T1675T1674T1671T1670T1672T1673
SDYS300267 SDY_1278SDY_1279SDY_1276SDY_1652SDY_1275SDY_1278SDY_1281SDY_1282SDY_1651SDY_1279
SCO SCO2959SCO6535SCO6424SCO3008SCO2959SCO0218SCO6532SCO6534SCO6535
SBOY300268 SBO_1843SBO_1842SBO_1844SBO_1840SBO_1845SBO_1843SBO_1840SBO_1839SBO_1841SBO_1842
SARE391037 SARE_0190SARE_0192SARE_1529SARE_1603SARE_4255SARE_0194SARE_0195SARE_0193SARE_0192
RXYL266117 RXYL_1204RXYL_1205RXYL_2612RXYL_2809RXYL_1204RXYL_1207RXYL_1208RXYL_1206RXYL_1205
RSOL267608 RSP0973RSP0974RSP0979RSP0976RSP0980RSP0973RSP0976RSP0977RSP0975RSP0974
RMET266264 RMET_2073RMET_2074RMET_2086RMET_2076RMET_2087RMET_2073RMET_2076RMET_2077RMET_2075RMET_2074
RFER338969 RFER_2791RFER_2792RFER_1870RFER_2794RFER_0894RFER_2791RFER_2794RFER_2795RFER_2793RFER_2792
REUT381666 PHG269PHG270PHG265H16_B2267PHG266PHG269H16_B2267PHG273PHG271PHG270
REUT264198 REUT_B5001REUT_B5002REUT_B5065REUT_B5004REUT_B5066REUT_B5001REUT_B5004REUT_B5005REUT_B5003REUT_B5002
PSTU379731 PST_0893PST_0896PST_0892PST_0898PST_0891PST_0893PST_0898PST_0899PST_0897PST_0896
PSP296591 BPRO_4596BPRO_4595BPRO_4599BPRO_4593BPRO_4598BPRO_4596BPRO_4593BPRO_4592BPRO_4594BPRO_4595
PNAP365044 PNAP_3762PNAP_3761PNAP_3765PNAP_3759PNAP_3764PNAP_3762PNAP_3759PNAP_3758PNAP_3760PNAP_3761
PARC259536 PSYC_0604PSYC_0605PSYC_0603PSYC_0607PSYC_0602PSYC_0604PSYC_0607PSYC_0608PSYC_0606PSYC_0605
PAER208964 PA3876PA3875PA3878PA3873PA3879PA3876PA3873PA3872PA3874PA3875
PAER208963 PA14_13770PA14_13780PA14_13740PA14_13810PA14_13730PA14_13770PA14_13810PA14_13830PA14_13800PA14_13780
PACN267747 PPA0511PPA0510PPA0925PPA0926PPA0511PPA0508PPA0507PPA0509PPA0510
OCAR504832 OCAR_5042OCAR_5043OCAR_4624OCAR_5045OCAR_5042OCAR_5045OCAR_5046OCAR_5044OCAR_5043
OANT439375 OANT_2890OANT_2891OANT_2893OANT_0443OANT_2890OANT_2893OANT_2894OANT_2892OANT_2891
NSP35761 NOCA_0349NOCA_1346NOCA_0946NOCA_2635NOCA_0349NOCA_1348NOCA_1349NOCA_1347NOCA_1346
NFAR247156 NFA45650NFA45490NFA4190NFA31210NFA45650NFA45510NFA45520NFA45500NFA45490
MSP409 M446_5685M446_5684M446_5682M446_5717M446_5685M446_5682M446_5681M446_5683M446_5684
MSP189918 MKMS_0274MKMS_1280MKMS_0602MKMS_0603MKMS_0274MKMS_1278MKMS_1277MKMS_1279MKMS_1280
MSP164757 MJLS_0254MJLS_1289MJLS_0580MJLS_0581MJLS_0254MJLS_1287MJLS_1286MJLS_1288MJLS_1289
MSP164756 MMCS_0264MMCS_1263MMCS_0589MMCS_0590MMCS_0264MMCS_1261MMCS_1260MMCS_1262MMCS_1263
MSME246196 MSMEG_0433MSMEG_5140MSMEG_5241MSMEG_1494MSMEG_0433MSMEG_5138MSMEG_5137MSMEG_5139MSMEG_5140
MPET420662 MPE_A1709MPE_A1708MPE_A1687MPE_A1706MPE_A1709MPE_A1706MPE_A1705MPE_A1707MPE_A1708
MAQU351348 MAQU_3137MAQU_3086MAQU_3088MAQU_3084MAQU_3089MAQU_3137MAQU_3084MAQU_3083MAQU_3085MAQU_3086
KPNE272620 GKPORF_B1354GKPORF_B1352GKPORF_B1355GKPORF_B0973GKPORF_B1357GKPORF_B1354GKPORF_B1350GKPORF_B1348GKPORF_B1351GKPORF_B1352
HCHE349521 HCH_04020HCH_04011HCH_04013HCH_04009HCH_04021HCH_04020HCH_04009HCH_04008HCH_04010HCH_04011
HARS204773 HEAR1664HEAR1662HEAR1653HEAR1660HEAR1654HEAR1664HEAR1660HEAR1659HEAR1661HEAR1662
ESP42895 ENT638_2316ENT638_2315ENT638_2317ENT638_2064ENT638_2318ENT638_2316ENT638_2313ENT638_2312ENT638_2314ENT638_2315
EFER585054 EFER_1737EFER_1736EFER_1738EFER_1734EFER_1739EFER_1737EFER_1734EFER_1733EFER_1735EFER_1736
ECOO157 NARUNARZNARXNARWNARLNARUNARJNARINARYNARZ
ECOL83334 ECS2072ECS2071ECS1727ECS2069ECS1726ECS2072ECS1731ECS1732ECS2070ECS2071
ECOL585397 ECED1_1622ECED1_1621ECED1_1371ECED1_1619ECED1_1370ECED1_1622ECED1_1376ECED1_1377ECED1_1620ECED1_1621
ECOL585057 ECIAI39_1731ECIAI39_1730ECIAI39_1560ECIAI39_1728ECIAI39_1559ECIAI39_1731ECIAI39_1565ECIAI39_1566ECIAI39_1729ECIAI39_1730
ECOL585056 ECUMN_1722ECUMN_1721ECUMN_1521ECUMN_1719ECUMN_1520ECUMN_1722ECUMN_1525ECUMN_1526ECUMN_1720ECUMN_1721
ECOL585055 EC55989_1601EC55989_1599EC55989_1320EC55989_1597EC55989_1319EC55989_1601EC55989_1324EC55989_1325EC55989_1598EC55989_1599
ECOL585035 ECS88_1564ECS88_1563ECS88_1291ECS88_1561ECS88_1290ECS88_1564ECS88_1296ECS88_1297ECS88_1562ECS88_1563
ECOL585034 ECIAI1_1473ECIAI1_1471ECIAI1_1244ECIAI1_1469ECIAI1_1243ECIAI1_1473ECIAI1_1249ECIAI1_1250ECIAI1_1470ECIAI1_1471
ECOL481805 ECOLC_2400ECOLC_2399ECOLC_2401ECOLC_2190ECOLC_2402ECOLC_2400ECOLC_2397ECOLC_2396ECOLC_2398ECOLC_2399
ECOL469008 ECBD_2395ECBD_2394ECBD_2397ECBD_2172ECBD_2398ECBD_2395ECBD_2392ECBD_2391ECBD_2393ECBD_2394
ECOL439855 ECSMS35_1916ECSMS35_1915ECSMS35_1918ECSMS35_1708ECSMS35_1919ECSMS35_1916ECSMS35_1913ECSMS35_1912ECSMS35_1914ECSMS35_1915
ECOL413997 ECB_01427ECB_01426ECB_01200ECB_01424ECB_01199ECB_01427ECB_01204ECB_01205ECB_01425ECB_01426
ECOL409438 ECSE_1558ECSE_1557ECSE_1275ECSE_1555ECSE_1274ECSE_1558ECSE_1280ECSE_1281ECSE_1556ECSE_1557
ECOL405955 APECO1_606APECO1_605APECO1_339APECO1_603APECO1_338APECO1_606APECO1_343APECO1_344APECO1_604APECO1_605
ECOL364106 UTI89_C1687UTI89_C1686UTI89_C1418UTI89_C1684UTI89_C1417UTI89_C1687UTI89_C1423UTI89_C1424UTI89_C1685UTI89_C1686
ECOL362663 ECP_1471ECP_1470ECP_1271ECP_1468ECP_1270ECP_1471ECP_1276ECP_1277ECP_1469ECP_1470
ECOL331111 ECE24377A_1650ECE24377A_1649ECE24377A_1372ECE24377A_1647ECE24377A_1371ECE24377A_1650ECE24377A_1377ECE24377A_1378ECE24377A_1648ECE24377A_1649
ECOL316407 ECK1463:JW1464:B1469ECK1462:JW1463:B1468ECK1216:JW1213:B1222ECK1460:JW1461:B1466ECK1215:JW1212:B1221ECK1463:JW1464:B1469ECK1220:JW1217:B1226ECK1221:JW1218:B1227ECK1461:JW1462:B1467ECK1462:JW1463:B1468
ECOL199310 C1901C1900C1682C1898C1681C1901C1687C1688C1899C1900
ECAR218491 ECA2030ECA2031ECA2029ECA2033ECA2028ECA2030ECA2033ECA2034ECA2032ECA2031
DHAF138119 DSY0332DSY0334DSY0884DSY4129DSY0332DSY0336DSY0337DSY0335DSY0334
CVIO243365 CV_2544CV_2543CV_2534CV_2541CV_2535CV_2544CV_2541CV_2540CV_2542CV_2543
BWEI315730 BCERKBAB4_1981BCERKBAB4_1971BCERKBAB4_1362BCERKBAB4_0919BCERKBAB4_1981BCERKBAB4_1973BCERKBAB4_1974BCERKBAB4_1972BCERKBAB4_1971
BVIE269482 BCEP1808_5661BCEP1808_5656BCEP1808_4895BCEP1808_5658BCEP1808_3814BCEP1808_5661BCEP1808_5658BCEP1808_5659BCEP1808_5657BCEP1808_5656
BTHU412694 BALH_1901BALH_1887BALH_2024BALH_0574BALH_1901BALH_1890BALH_1891BALH_1889BALH_1887
BTHU281309 BT9727_1964BT9727_1954BT9727_2047BT9727_5091BT9727_1964BT9727_1956BT9727_1957BT9727_1955BT9727_1954
BTHA271848 BTH_I1855BTH_I1854BTH_I1850BTH_II1251BTH_I1849BTH_I1855BTH_II1251BTH_II1252BTH_I1853BTH_I1854
BSUI470137 BSUIS_B0306BSUIS_B0305BSUIS_B0303BSUIS_A0373BSUIS_B0306BSUIS_B0303BSUIS_B0302BSUIS_B0304BSUIS_B0305
BSUI204722 BR_A0300BR_A0299BR_A0297BR_0342BR_A0300BR_A0297BR_A0296BR_A0298BR_A0299
BSUB BSU37320BSU37280BSU33090BSU05420BSU37320BSU37260BSU37250BSU37270BSU37280
BPSE320373 BURPS668_2623BURPS668_A1630BURPS668_2629BURPS668_A1628BURPS668_2630BURPS668_2623BURPS668_A1628BURPS668_A1627BURPS668_A1629BURPS668_A1630
BPSE320372 BURPS1710B_A2990BURPS1710B_B0140BURPS1710B_A2996BURPS1710B_B0138BURPS1710B_A2997BURPS1710B_A2990BURPS1710B_B0138BURPS1710B_B0137BURPS1710B_B0139BURPS1710B_B0140
BPSE272560 BPSL2308BPSS1159BPSL2313BPSS1157BPSL2314BPSL2308BPSS1157BPSS1156BPSS1158BPSS1159
BPET94624 BPET4988BPET4989BPET4996BPET4991BPET4997BPET4988BPET3825BPET3824BPET4990BPET4989
BMEL224914 BMEII0948BMEII0950BMEII0952BMEI1582BMEII0948BMEII0952BMEII0953BMEII0951BMEII0950
BMAL320389 BMA10247_1512BMA10247_1514BMA10247_1518BMA10247_1516BMA10247_1519BMA10247_1512BMA10247_1516BMA10247_1517BMA10247_1515BMA10247_1514
BMAL320388 BMASAVP1_A2240BMASAVP1_A2241BMASAVP1_A2245BMASAVP1_A2243BMASAVP1_A2246BMASAVP1_A2240BMASAVP1_A2243BMASAVP1_A2244BMASAVP1_A2242BMASAVP1_A2241
BMAL243160 BMA_1730BMA_1731BMA_1735BMA_1733BMA_1736BMA_1730BMA_1733BMA_1734BMA_1732BMA_1731
BLIC279010 BL01812BL01172BL03938BL00730BL01166BL01174BL01175BL01173BL01172
BCER572264 BCA_2223BCA_2213BCA_2347BCA_0671BCA_2223BCA_2215BCA_2216BCA_2214BCA_2213
BCER315749 BCER98_3390BCER98_3399BCER98_1159BCER98_0214BCER98_3390BCER98_3401BCER98_3402BCER98_3400BCER98_3399
BCER288681 BCE33L1942BCE33L1932BCE33L1320BCE33L5108BCE33L1942BCE33L1934BCE33L1935BCE33L1933BCE33L1932
BCER226900 BC_2128BC_2118BC_1438BC_5411BC_2128BC_2120BC_2121BC_2119BC_2118
BCAN483179 BCAN_B0302BCAN_B0301BCAN_B0299BCAN_A0350BCAN_B0302BCAN_B0299BCAN_B0298BCAN_B0300BCAN_B0301
BANT592021 BAA_2204BAA_2191BAA_2326BAA_5689BAA_2204BAA_2193BAA_2194BAA_2192BAA_2191
BANT568206 BAMEG_2453BAMEG_2466BAMEG_3135BAMEG_5706BAMEG_2453BAMEG_2464BAMEG_2463BAMEG_2465BAMEG_2466
BANT261594 GBAA2138GBAA2125GBAA2264GBAA5661GBAA2138GBAA2127GBAA2128GBAA2126GBAA2125
BANT260799 BAS1990BAS1977BAS2108BAS5263BAS1990BAS1979BAS1980BAS1978BAS1977
BAMY326423 RBAM_034470RBAM_034430RBAM_005920RBAM_009590RBAM_034470RBAM_034410RBAM_034400RBAM_034420RBAM_034430
BAMB398577 BAMMC406_6459BAMMC406_6464BAMMC406_6197BAMMC406_6462BAMMC406_5498BAMMC406_6459BAMMC406_6462BAMMC406_6461BAMMC406_6463BAMMC406_6464
BAMB339670 BAMB_5706BAMB_5711BAMB_3775BAMB_5709BAMB_4946BAMB_5706BAMB_5709BAMB_5708BAMB_5710BAMB_5711
BABO262698 BRUAB2_0881BRUAB2_0882BRUAB2_0884BRUAB1_0368BRUAB2_0881BRUAB2_0884BRUAB2_0885BRUAB2_0883BRUAB2_0882
ASP76114 EBA6288EBA6286EBA3507EBA6283EBA3508EBA6288EBA6283EBA6282EBA6285EBA6286
ASP232721 AJS_0435AJS_0436AJS_0432AJS_0438AJS_0433AJS_0435AJS_0438AJS_0439AJS_0437AJS_0436
ASP1667 ARTH_1268ARTH_0314ARTH_3491ARTH_0485ARTH_1268ARTH_0316ARTH_0317ARTH_0315ARTH_0314
AEHR187272 MLG_1004MLG_1003MLG_1005MLG_1001MLG_1006MLG_1004MLG_1001MLG_1000MLG_1002MLG_1003
AAVE397945 AAVE_0660AAVE_0661AAVE_4381AAVE_0663AAVE_0660AAVE_0663AAVE_0664AAVE_0662AAVE_0661


Organism features enriched in list (features available for 99 out of the 105 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000104133112
Disease:Anthrax 0.000790144
Disease:Brucellosis 0.003302545
Disease:Dysentery 0.000021166
Disease:Food_poisoning 0.008015259
Disease:Glanders_and_pneumonia 0.004773833
Disease:Melioidosis 0.004773833
Disease:opportunistic_infections 0.003302545
Endospores:No 0.002090624211
Endospores:Yes 0.00082801853
GC_Content_Range4:0-40 5.486e-1011213
GC_Content_Range4:40-60 0.000669552224
GC_Content_Range4:60-100 0.001822336145
GC_Content_Range7:30-40 4.816e-611166
GC_Content_Range7:40-50 0.00027578117
GC_Content_Range7:50-60 1.339e-1144107
GC_Content_Range7:60-70 0.003313733134
Genome_Size_Range5:2-4 2.955e-713197
Genome_Size_Range5:4-6 5.938e-1869184
Genome_Size_Range5:6-10 0.00052351747
Genome_Size_Range9:2-3 5.584e-83120
Genome_Size_Range9:4-5 0.00111282796
Genome_Size_Range9:5-6 8.187e-144288
Genome_Size_Range9:6-8 0.00039801538
Gram_Stain:Gram_Neg 0.001793369333
Habitat:Terrestrial 0.00002471531
Motility:No 0.002324715151
Motility:Yes 0.000043463267
Oxygen_Req:Anaerobic 2.037e-63102
Oxygen_Req:Facultative 1.367e-757201
Pathogenic_in:Animal 0.00198782066
Pathogenic_in:Human 0.001343249213
Pathogenic_in:No 0.000378524226
Shape:Coccus 0.0000812382
Shape:Rod 9.816e-1186347
Temp._range:Mesophilic 0.000240992473
Temp._range:Thermophilic 0.0091806135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 332
Effective number of orgs (counting one per cluster within 468 clusters): 267

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae1
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80041
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339131
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-21
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169611
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.1
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10401
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE1313 Streptococcus pneumoniae1
SMAR399550 ncbi Staphylothermus marinus F10
SGLO343509 ncbi Sodalis glossinidius morsitans0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170251
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-31
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT31
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1251
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251961
NEUT335283 ncbi Nitrosomonas eutropha C911
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
MXAN246197 ncbi Myxococcus xanthus DK 16221
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP400668 ncbi Marinomonas sp. MWYL10
MSP266779 ncbi Chelativorans sp. BNC11
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille1
JSP290400 ncbi Jannaschia sp. CCS11
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HDUC233412 ncbi Haemophilus ducreyi 35000HP1
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GURA351605 ncbi Geobacter uraniireducens Rf41
GOXY290633 ncbi Gluconobacter oxydans 621H0
GFOR411154 ncbi Gramella forsetii KT08030
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DRED349161 ncbi Desulfotomaculum reducens MI-11
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPSY167879 ncbi Colwellia psychrerythraea 34H1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP376 Bradyrhizobium sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128221
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB501
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ABUT367737 ncbi Arcobacter butzleri RM40180
ABAU360910 ncbi Bordetella avium 197N0


Names of the homologs of the genes in the group in each of these orgs
  EG12153   EG10648   EG10646   EG10645   EG10643   EG10642   EG10641   EG10640   EG10639   EG10638   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884 XCC-B100_2306
XCAM316273 XCAORF_2287
XCAM314565 XC_2178
XCAM190485 XCC2006
XAXO190486
XAUT78245
WPIP955
WPIP80849
VEIS391735 VEIS_0031
VCHO VCA0675
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX1628
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTEN273068 TTE1681
TSP28240
TSP1755 TETH514_2042
TPSE340099 TETH39_0780
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TERY203124
TELO197221
TDEN326298
TDEN243275
TCRU317025
TACI273075
SWOL335541
STOK273063 ST1839
STHE322159
STHE299768 STR1421
STHE264199 STU1421
SSUI391296 SSU98_0417
SSUI391295 SSU05_0430
SSP84588
SSP64471
SSP644076
SSP387093 SUN_1491
SSP321332
SSP321327
SSP292414 TM1040_0876
SSP1148
SSP1131
SSOL273057
SSAP342451 SSP0947
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE171101 SPR0344
SPNE1313 SPJ_0374
SMAR399550
SGLO343509
SFUM335543 SFUM_1664
SELO269084
SDEN318161
SDEG203122
SAGA211110
SAGA208435
SAGA205921
SACI56780 SYN_01954
SACI330779
RTYP257363
RSPH349102 RSPH17025_0768
RSPH349101
RSPH272943
RSAL288705
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPOM246200 SPO_3558
RPAL316058 RPB_3416
RPAL316057
RPAL316056 RPC_1751
RPAL316055
RPAL258594
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSP312153
PSP117
PRUM264731
PPEN278197
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PING357804
PHOR70601 PH1353
PHAL326442 PSHAA1592
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
OTSU357244
NSEN222891
NPHA348780 NP2584A
NOCE323261
NMUL323848 NMUL_A1236
NEUT335283 NEUT_1840
NEUR228410 NE1738
MXAN246197 MXAN_4071
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSP400668
MSP266779 MESO_1450
MSED399549 MSED_0881
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158 MMARC6_1376
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108 AMB3289
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAER449447
MAEO419665
MACE188937
LXYL281090 LXX08730
LWEL386043 LWE1005
LSAK314315 LSA1370
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMON265669 LMOF2365_1042
LMON169963 LMO1021
LMES203120
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626 LIN1020
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286 MMA_2917
JSP290400 JANN_1442
IHOS453591
HWAL362976
HPYL85963
HPYL357544
HPY
HMOD498761 HM1_1196
HHEP235279
HDUC233412 HD_0305
HBUT415426 HBUT_0372
HACI382638
GVIO251221 GLR3986
GURA351605 GURA_0863
GOXY290633
GFOR411154
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
ERUM302409
ERUM254945
ELIT314225
EFAE226185 EF_2912
ECHA205920
ECAN269484
DVUL882
DSHI398580 DSHI_1237
DRED349161 DRED_2108
DPSY177439
DNOD246195
DDES207559 DDE_0682
CTRA471473
CTRA471472
CTET212717
CTEP194439 CT_0493
CSUL444179
CPSY167879 CPS_1260
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_3936
CPER289380 CPR_2259
CPER195103 CPF_2556
CPER195102 CPE2274
CPEL335992
CNOV386415
CMUR243161
CMIC443906 CMM_1242
CMIC31964 CMS1730
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148 C8J_1484
CJEJ360109
CJEJ354242 CJJ81176_1571
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHUT269798
CHOM360107
CFET360106
CFEL264202
CDIF272563
CDES477974
CCUR360105 CCV52592_2107
CCON360104 CCC13826_2088
CCHL340177 CAG_0620
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CACE272562 CAC3429
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSP376
BSP107806
BQUI283165
BPER257313
BPAR257311 BPP1030
BLON206672 BL0930
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBRO257310 BB1245
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AURANTIMONAS
ASP62977
APHA212042
AMAR234826
ALAI441768
AFER243159
ABUT367737
ABAU360910


Organism features enriched in list (features available for 311 out of the 332 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.003311699
Arrangment:Chains 0.00011216592
Arrangment:Filaments 0.0052822110
Arrangment:Pairs 0.000169043112
Arrangment:Singles 0.0010049170286
Disease:Pharyngitis 0.006284488
Disease:Wide_range_of_infections 0.00091531111
Disease:bronchitis_and_pneumonitis 0.006284488
Endospores:No 0.0019577128211
Endospores:Yes 0.00325981953
GC_Content_Range4:0-40 1.358e-19165213
GC_Content_Range4:40-60 0.0004724101224
GC_Content_Range4:60-100 7.758e-1144145
GC_Content_Range7:0-30 1.240e-124647
GC_Content_Range7:30-40 7.887e-9119166
GC_Content_Range7:50-60 3.853e-734107
GC_Content_Range7:60-70 3.119e-942134
Genome_Size_Range5:0-2 1.987e-32142155
Genome_Size_Range5:4-6 3.705e-1358184
Genome_Size_Range5:6-10 1.117e-12347
Genome_Size_Range9:0-1 6.359e-72627
Genome_Size_Range9:1-2 2.782e-24116128
Genome_Size_Range9:4-5 0.00027593696
Genome_Size_Range9:5-6 3.650e-92288
Genome_Size_Range9:6-8 7.289e-11238
Gram_Stain:Gram_Pos 0.000753864150
Habitat:Host-associated 0.0008306127206
Habitat:Multiple 0.007103783178
Habitat:Terrestrial 0.0000616631
Motility:Yes 0.0078122130267
Optimal_temp.:30 0.0068213315
Optimal_temp.:30-37 0.0011660318
Optimal_temp.:37 0.006809467106
Oxygen_Req:Anaerobic 3.837e-1082102
Oxygen_Req:Facultative 3.208e-974201
Oxygen_Req:Microaerophilic 0.00611131518
Shape:Rod 3.727e-6159347
Shape:Sphere 0.00073311719
Shape:Spiral 1.151e-73234



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 8
Effective number of orgs (counting one per cluster within 468 clusters): 8

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
PACN267747 ncbi Propionibacterium acnes KPA171202 0.00095388679
PARC259536 ncbi Psychrobacter arcticus 273-4 0.0013827131210
STRO369723 ncbi Salinispora tropica CNB-440 0.004839510429
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA 0.00518657328
TDEN292415 ncbi Thiobacillus denitrificans ATCC 25259 0.0055152150610
SARE391037 ncbi Salinispora arenicola CNS-205 0.005721310629
ANAE240017 Actinomyces oris MG1 0.00693527608
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-1 0.0096869159310


Names of the homologs of the genes in the group in each of these orgs
  EG12153   EG10648   EG10646   EG10645   EG10643   EG10642   EG10641   EG10640   EG10639   EG10638   
PACN267747 PPA0511PPA0510PPA0925PPA0926PPA0511PPA0508PPA0507PPA0509PPA0510
PARC259536 PSYC_0604PSYC_0605PSYC_0603PSYC_0607PSYC_0602PSYC_0604PSYC_0607PSYC_0608PSYC_0606PSYC_0605
STRO369723 STROP_0175STROP_0177STROP_1578STROP_1796STROP_3865STROP_0179STROP_0180STROP_0178STROP_0177
CVES412965 COSY_0649COSY_0915COSY_0647COSY_0914COSY_0647COSY_0646COSY_0648COSY_0649
TDEN292415 TBD_1402TBD_1403TBD_1400TBD_1405TBD_1399TBD_1402TBD_1405TBD_1406TBD_1404TBD_1403
SARE391037 SARE_0190SARE_0192SARE_1529SARE_1603SARE_4255SARE_0194SARE_0195SARE_0193SARE_0192
ANAE240017 ANA_1444ANA_1445ANA_1827ANA_1444ANA_1447ANA_1448ANA_1446ANA_1445
AEHR187272 MLG_1004MLG_1003MLG_1005MLG_1001MLG_1006MLG_1004MLG_1001MLG_1000MLG_1002MLG_1003


Organism features enriched in list (features available for 7 out of the 8 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-6196 (serine racemization)102630.5308
PWY-6374 (vibriobactin biosynthesis)77500.4823
GLUCARDEG-PWY (D-glucarate degradation I)152710.4531
PWY0-1182 (trehalose degradation II (trehalase))70450.4508
GALACTITOLCAT-PWY (galactitol degradation)73440.4226
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31260.4097
PWY-561 (superpathway of glyoxylate cycle)162690.4076
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45320.4044



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10648   EG10646   EG10645   EG10643   EG10642   EG10641   EG10640   EG10639   EG10638   
EG121530.9996450.9988220.9993270.9989590.9998760.9995020.9995350.9996050.999639
EG106480.9986820.999440.9986610.999630.999680.999690.9998240.999885
EG106460.9987360.9996210.9988640.9987680.9987310.9986520.998711
EG106450.998760.9993110.9995160.9994870.9995290.99944
EG106430.9989380.9987360.9986740.9985610.998663
EG106420.9994680.9995010.9995870.999626
EG106410.9997660.9997290.99968
EG106400.9997260.99969
EG106390.999814
EG10638



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PAIRWISE BLAST SCORES:

  EG12153   EG10648   EG10646   EG10645   EG10643   EG10642   EG10641   EG10640   EG10639   EG10638   
EG121530.0f0----0----
EG10648-0.0f0-------0
EG10646--0.0f0-------
EG10645---0.0f0--1.5e-47---
EG10643----0.0f0-----
EG106420----0.0f0----
EG10641---4.1e-61--0.0f0---
EG10640-------0.0f0--
EG10639--------0.0f0-
EG10638-0-------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-3261 (NarGH catalytic dimer of nitrate reductase A) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.200, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9986 EG10639 (narH) NARH-MONOMER (nitrate reductase A, β subunit)
   *in cand* 0.9995 0.9987 EG10638 (narG) NARG-MONOMER (nitrate reductase A, α subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9987 EG10640 (narI) NARI-MONOMER (nitrate reductase A, γ subunit)
   *in cand* 0.9995 0.9987 EG10641 (narJ) NARJ-MONOMER (molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1)
   *in cand* 0.9995 0.9989 EG10642 (narK) NARK-MONOMER (NarK MFS nitrate/nitrite antiporter)
   *in cand* 0.9990 0.9986 EG10643 (narL) PHOSPHO-NARL (NarL-Phosphorylated transcriptional dual regulator)
   *in cand* 0.9994 0.9987 EG10645 (narW) NARW-MONOMER (NarW, probable private chaperone for NarZ nitrate reductase subunit)
   *in cand* 0.9990 0.9987 EG10646 (narX) PHOSPHO-NARX (NarX-Phis)
   *in cand* 0.9995 0.9987 EG10648 (narZ) NARZ-MONOMER (nitrate reductase Z, α subunit)
   *in cand* 0.9995 0.9988 EG12153 (narU) NARU-MONOMER (NarU MFS nitrate/nitrite antiporter)

- NITRATREDUCTA-CPLX (nitrate reductase A) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.300, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9987 EG10638 (narG) NARG-MONOMER (nitrate reductase A, α subunit)
   *in cand* 0.9995 0.9986 EG10639 (narH) NARH-MONOMER (nitrate reductase A, β subunit)
   *in cand* 0.9995 0.9987 EG10640 (narI) NARI-MONOMER (nitrate reductase A, γ subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9987 EG10641 (narJ) NARJ-MONOMER (molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1)
   *in cand* 0.9995 0.9989 EG10642 (narK) NARK-MONOMER (NarK MFS nitrate/nitrite antiporter)
   *in cand* 0.9990 0.9986 EG10643 (narL) PHOSPHO-NARL (NarL-Phosphorylated transcriptional dual regulator)
   *in cand* 0.9994 0.9987 EG10645 (narW) NARW-MONOMER (NarW, probable private chaperone for NarZ nitrate reductase subunit)
   *in cand* 0.9990 0.9987 EG10646 (narX) PHOSPHO-NARX (NarX-Phis)
   *in cand* 0.9995 0.9987 EG10648 (narZ) NARZ-MONOMER (nitrate reductase Z, α subunit)
   *in cand* 0.9995 0.9988 EG12153 (narU) NARU-MONOMER (NarU MFS nitrate/nitrite antiporter)

- PWY0-1352 (NADH to nitrate electron transfer) (degree of match pw to cand: 0.211, degree of match cand to pw: 0.400, average score: 0.807)
  Genes in pathway or complex:
             0.5963 0.3261 EG12083 (nuoB) NUOB-MONOMER (NADH:ubiquinone oxidoreductase, chain B)
             0.5943 0.3549 EG12084 (nuoC) NUOC-MONOMER (NADH:ubiquinone oxidoreductase, chain CD)
             0.6673 0.4965 EG12089 (nuoI) NUOI-MONOMER (NADH:ubiquinone oxidoreductase, chain I)
             0.6715 0.2060 EG12086 (nuoE) NUOE-MONOMER (NADH:ubiquinone oxidoreductase, chain E)
             0.6286 0.3837 EG11774 (nuoF) NUOF-MONOMER (NADH:ubiquinone oxidoreductase, chain F)
             0.6175 0.4003 EG12087 (nuoG) NUOG-MONOMER (NADH:ubiquinone oxidoreductase, chain G)
             0.6070 0.3721 EG12093 (nuoN) NUON-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit N)
             0.6513 0.4527 EG11773 (nuoM) NUOM-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit M)
             0.5950 0.3443 EG12092 (nuoL) NUOL-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit L)
             0.6771 0.4782 EG12091 (nuoK) NUOK-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit K)
             0.6416 0.4291 EG12090 (nuoJ) NUOJ-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit J)
             0.6408 0.4370 EG12088 (nuoH) NUOH-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit H)
             0.6037 0.3546 EG12082 (nuoA) NUOA-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit A)
   *in cand* 0.9995 0.9987 EG10638 (narG) NARG-MONOMER (nitrate reductase A, α subunit)
   *in cand* 0.9995 0.9986 EG10639 (narH) NARH-MONOMER (nitrate reductase A, β subunit)
   *in cand* 0.9995 0.9987 EG10640 (narI) NARI-MONOMER (nitrate reductase A, γ subunit)
             0.9994 0.9982 EG10644 (narV) NARV-MONOMER (nitrate reductase Z, γ subunit)
   *in cand* 0.9995 0.9987 EG10648 (narZ) NARZ-MONOMER (nitrate reductase Z, α subunit)
             0.9995 0.9985 EG10647 (narY) NARY-MONOMER (nitrate reductase Z, β subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9987 EG10641 (narJ) NARJ-MONOMER (molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1)
   *in cand* 0.9995 0.9989 EG10642 (narK) NARK-MONOMER (NarK MFS nitrate/nitrite antiporter)
   *in cand* 0.9990 0.9986 EG10643 (narL) PHOSPHO-NARL (NarL-Phosphorylated transcriptional dual regulator)
   *in cand* 0.9994 0.9987 EG10645 (narW) NARW-MONOMER (NarW, probable private chaperone for NarZ nitrate reductase subunit)
   *in cand* 0.9990 0.9987 EG10646 (narX) PHOSPHO-NARX (NarX-Phis)
   *in cand* 0.9995 0.9988 EG12153 (narU) NARU-MONOMER (NarU MFS nitrate/nitrite antiporter)

- PWY0-1321 (formate to nitrate electron transfer) (degree of match pw to cand: 0.333, degree of match cand to pw: 0.400, average score: 0.844)
  Genes in pathway or complex:
             0.8793 0.5497 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
             0.8907 0.6593 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
             0.2872 0.1052 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
             0.3391 0.1366 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
   *in cand* 0.9995 0.9987 EG10638 (narG) NARG-MONOMER (nitrate reductase A, α subunit)
   *in cand* 0.9995 0.9986 EG10639 (narH) NARH-MONOMER (nitrate reductase A, β subunit)
   *in cand* 0.9995 0.9987 EG10640 (narI) NARI-MONOMER (nitrate reductase A, γ subunit)
             0.9994 0.9982 EG10644 (narV) NARV-MONOMER (nitrate reductase Z, γ subunit)
   *in cand* 0.9995 0.9987 EG10648 (narZ) NARZ-MONOMER (nitrate reductase Z, α subunit)
             0.9995 0.9985 EG10647 (narY) NARY-MONOMER (nitrate reductase Z, β subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9987 EG10641 (narJ) NARJ-MONOMER (molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1)
   *in cand* 0.9995 0.9989 EG10642 (narK) NARK-MONOMER (NarK MFS nitrate/nitrite antiporter)
   *in cand* 0.9990 0.9986 EG10643 (narL) PHOSPHO-NARL (NarL-Phosphorylated transcriptional dual regulator)
   *in cand* 0.9994 0.9987 EG10645 (narW) NARW-MONOMER (NarW, probable private chaperone for NarZ nitrate reductase subunit)
   *in cand* 0.9990 0.9987 EG10646 (narX) PHOSPHO-NARX (NarX-Phis)
   *in cand* 0.9995 0.9988 EG12153 (narU) NARU-MONOMER (NarU MFS nitrate/nitrite antiporter)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10638 EG10639 EG10640 EG10641 EG10642 EG10643 EG10646 (centered at EG10638)
EG10645 EG10648 EG12153 (centered at EG10648)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12153   EG10648   EG10646   EG10645   EG10643   EG10642   EG10641   EG10640   EG10639   EG10638   
205/623206/623226/62391/623235/623178/623137/623158/623217/623195/623
AAEO224324:0:Tyes0-------711-
AAUR290340:2:Tyes0---27070----
AAVE397945:0:Tyes0136583-03421
ABAC204669:0:Tyes--1636-0-----
ABOR393595:0:Tyes43-1-41023
ACAU438753:0:Tyes01-3-03421
ACEL351607:0:Tyes05--1254-2135
ACRY349163:8:Tyes50-2--2310
ADEH290397:0:Tyes1771731-0177-176174173
AEHR187272:0:Tyes4351641023
AFUL224325:0:Tyes-0------21790
AHYD196024:0:Tyes--1-0---1662-
AMAR329726:9:Tyes--1192-0-----
AMET293826:0:Tyes--92-0-----
ANAE240017:0:Tyes01--35803421
AORE350688:0:Tyes--0-1-----
APER272557:0:Tyes-0------60
APLE416269:0:Tyes-1658411-0----1658
APLE434271:0:Tno-1660418-0----1660
ASAL382245:5:Tyes--0-1-----
ASP1667:3:Tyes96703207-1729672310
ASP232721:2:Tyes3406136754
ASP62928:0:Tyes0-1703------2403
ASP76114:2:Tyes1653165201650116531650164916511652
AVAR240292:1:Tyes--0-------
AVAR240292:3:Tyes----0-----
BABO262698:0:Tno01-3-03421
BABO262698:1:Tno----0-----
BAMB339670:1:Tno05-3-03245
BAMB339670:2:Tno--0-1166-----
BAMB398577:1:Tno2532580256-253256255257258
BAMB398577:2:Tno----0-----
BAMY326423:0:Tyes285228480-36628522846284528472848
BANT260799:0:Tno130131-3289132310
BANT261594:2:Tno130129-3275132310
BANT568206:2:Tyes013673-3137011101213
BANT592021:2:Tno130135-3438132310
BBRO257310:0:Tyes--------0-
BCAN483179:0:Tno43-1-41023
BCAN483179:1:Tno----0-----
BCEN331271:1:Tno--0-1174-----
BCEN331271:2:Tno-0--------
BCEN331272:2:Tyes--0-1305-----
BCEN331272:3:Tyes-0--------
BCER226900:1:Tyes6766660-3883676668669667666
BCER288681:0:Tno6156050-3787615607608606605
BCER315749:1:Tyes30223031904-030223033303430323031
BCER405917:1:Tyes-10431124-0----1043
BCER572264:1:Tno150814981632-015081500150114991498
BCLA66692:0:Tyes93902472-24737-310
BHAL272558:0:Tyes-16700-1018----1670
BJAP224911:0:Fyes0----0----
BLIC279010:0:Tyes016643592-303616711662166116631664
BLON206672:0:Tyes----0-----
BMAL243160:1:Tno0153603421
BMAL320388:1:Tno0153603421
BMAL320389:1:Tyes0264704532
BMEL224914:0:Tno02-4-04532
BMEL224914:1:Tno----0-----
BMEL359391:0:Tno-0-2--2310
BMEL359391:1:Tno----0-----
BOVI236:0:Tyes-3-1--1023
BOVI236:1:Tyes----0-----
BPAR257311:0:Tno--------0-
BPET94624:0:Tyes1171117211791174118011711011731172
BPSE272560:0:Tyes-3-1--1023
BPSE272560:1:Tyes0-5-60----
BPSE320372:0:Tno-3-1--1023
BPSE320372:1:Tno0-6-70----
BPSE320373:0:Tno-3-1--1023
BPSE320373:1:Tno0-6-70----
BPUM315750:0:Tyes-01150-1149-----
BSP36773:1:Tyes--1626-0-----
BSP36773:2:Tyes-0--------
BSUB:0:Tyes335533512926-033553349334833503351
BSUI204722:0:Tyes43-1-41023
BSUI204722:1:Tyes----0-----
BSUI470137:0:Tno43-1-41023
BSUI470137:1:Tno----0-----
BTHA271848:0:Tno---0--01--
BTHA271848:1:Tno651-06--45
BTHU281309:1:Tno10093-3118102310
BTHU412694:1:Tno127512641394-012751266126712651264
BVIE269482:5:Tyes50-2-52310
BVIE269482:6:Tyes--1055-0-----
BWEI315730:4:Tyes10401030439-010401032103310311030
BXEN266265:0:Tyes--0-------
BXEN266265:1:Tyes----944---0-
CACE272562:1:Tyes----0-----
CAULO:0:Tyes0----0----
CBEI290402:0:Tyes-0--64----0
CCHL340177:0:Tyes-0--------
CCON360104:2:Tyes--------0-
CCUR360105:0:Tyes-0--------
CDIP257309:0:Tyes4241--04239384041
CEFF196164:0:Fyes43--634-023
CGLU196627:0:Tyes43---41023
CHYD246194:0:Tyes-0------4650
CJEJ354242:2:Tyes--------0-
CJEJ407148:0:Tno--------0-
CMIC31964:2:Tyes----0-----
CMIC443906:2:Tyes----0-----
CPER195102:1:Tyes0---------
CPER195103:0:Tno0---------
CPER289380:3:Tyes0---------
CPHY357809:0:Tyes----0-----
CPSY167879:0:Tyes----0-----
CRUT413404:0:Tyes0-306-305-----
CSAL290398:0:Tyes01-3-03421
CSP501479:8:Fyes-0------10
CSP78:2:Tyes01-3-03421
CTEP194439:0:Tyes------0---
CVES412965:0:Tyes-32551254-1023
CVIO243365:0:Tyes109071107689
DARO159087:0:Tyes017658-90--17641765
DDES207559:0:Tyes-0--------
DETH243164:0:Tyes--541-----0-
DGEO319795:0:Tyes0---4260----
DGEO319795:1:Tyes--0-------
DHAF138119:0:Tyes02557-383804532
DOLE96561:0:Tyes-0------20
DRAD243230:3:Tyes--557-0-----
DRED349161:0:Tyes----0-----
DSHI398580:5:Tyes--------0-
DSP216389:0:Tyes--713-378---0-
DSP255470:0:Tno--790-436---0-
ECAR218491:0:Tyes2315025643
ECOL199310:0:Tno2132121210021367211212
ECOL316407:0:Tno2552541252025556253254
ECOL331111:6:Tno2672661264026767265266
ECOL362663:0:Tno1991981196019967197198
ECOL364106:1:Tno2702691267027067268269
ECOL405955:2:Tyes2742731271027456272273
ECOL409438:6:Tyes2862851283028667284285
ECOL413997:0:Tno2232221220022356221222
ECOL439855:4:Tno2062052080209206203202204205
ECOL469008:0:Tno2162152180219216213212214215
ECOL481805:0:Tno2122112130214212209208210211
ECOL585034:0:Tno2292281226022967227228
ECOL585035:0:Tno2532521250025367251252
ECOL585055:0:Tno2832821280028356281282
ECOL585056:2:Tno2042031201020456202203
ECOL585057:0:Tno1771761174017767175176
ECOL585397:0:Tno2322311229023267230231
ECOL83334:0:Tno3543531351035456352353
ECOLI:0:Tno2592581256025643
ECOO157:0:Tno2242251227022456226225
EFAE226185:3:Tyes--0-------
EFER585054:1:Tyes4351641023
ESP42895:1:Tyes2472462480249247244243245246
FALN326424:0:Tyes750-3377-0750----
FJOH376686:0:Tyes1---0-----
FSP106370:0:Tyes550-800-0550----
FSP1855:0:Tyes0-475-42740----
GBET391165:0:Tyes586----586---0
GKAU235909:1:Tyes357-0-278035714321433--
GMET269799:1:Tyes36961846--30698697696
GSUL243231:0:Tyes--183-1216---0-
GTHE420246:1:Tyes2062100--20612551256211210
GURA351605:0:Tyes--------0-
GVIO251221:0:Tyes--0-------
HARS204773:0:Tyes119071117689
HAUR316274:2:Tyes233-1423-0233---3386
HBUT415426:0:Tyes--------0-
HCHE349521:0:Tyes1134112111023
HDUC233412:0:Tyes----0-----
HHAL349124:0:Tyes--29-30---0-
HINF281310:0:Tyes-7640-477---763-
HINF374930:0:Tyes-8760-1172-----
HINF71421:0:Tno-7660-448---765-
HMAR272569:8:Tyes-0------10
HMOD498761:0:Tyes----0-----
HMUK485914:1:Tyes-1------01
HNEP81032:0:Tyes01-3-03521
HSAL478009:4:Tyes-0-------0
HSOM205914:1:Tyes--1472-0---861-
HSOM228400:0:Tno--0-1466---902-
HSP64091:2:Tno-0-------0
ILOI283942:0:Tyes1-2-01----
JSP290400:1:Tyes--------0-
JSP375286:0:Tyes--0-------
KPNE272620:2:Tyes3773753780379377373372374375
KRAD266940:2:Fyes0---20580----
LCAS321967:1:Tyes--1-0-----
LCHO395495:0:Tyes1801-0--1801----
LINN272626:1:Tno--0-------
LLAC272622:5:Tyes--0-1-----
LLAC272623:0:Tyes--0-1-----
LMON169963:0:Tno--0-------
LMON265669:0:Tyes--0-------
LPLA220668:0:Tyes016---018191716
LSAK314315:0:Tyes--0-------
LSPH444177:1:Tyes--1326-0-----
LWEL386043:0:Tyes--0-------
LXYL281090:0:Tyes----0-----
MABS561007:1:Tyes0-365--0----
MAQU351348:2:Tyes543516541023
MAVI243243:0:Tyes35460---35462310
MBOV233413:0:Tno2105931---09331510932931
MBOV410289:0:Tno2061927---09291485928927
MCAP243233:0:Tyes0---170-----
MEXT419610:0:Tyes01640-------1640
MFLA265072:0:Tyes0-122-123-----
MGIL350054:3:Tyes8720---8722310
MLEP272631:0:Tyes0----0----
MLOT266835:2:Tyes----0---839-
MMAG342108:0:Tyes--------0-
MMAR394221:0:Tyes43-1-41023
MMAR444158:0:Tyes---------0
MPET420662:1:Tyes2019017-2017161819
MSED399549:0:Tyes0---------
MSME246196:0:Tyes046684769-105504666466546674668
MSP164756:1:Tno0996327-3280994993995996
MSP164757:0:Tno01029326-32701027102610281029
MSP189918:2:Tyes01006328-32901004100310051006
MSP266779:3:Tyes0---------
MSP409:2:Tyes43-13341023
MSUC221988:0:Tyes--2075-0-----
MTBCDC:0:Tno2208970---09721573971970
MTBRV:0:Tno2083907---09091487908907
MTHE264732:0:Tyes-9190-1---409919
MTUB336982:0:Tno2067915---09171481916915
MTUB419947:0:Tyes2149931---09331524932931
MVAN350058:0:Tyes207531230--20753121312031223123
MXAN246197:0:Tyes--0-------
NARO279238:0:Tyes0----0----
NEUR228410:0:Tyes--0-------
NEUT335283:2:Tyes--0-------
NFAR247156:2:Tyes419941830-273941994185418641844183
NGON242231:0:Tyes--1-0-----
NHAM323097:2:Tyes10021492---0-194419461492
NMEN122586:0:Tno--0-1-----
NMEN122587:0:Tyes--0-1-----
NMEN272831:0:Tno--0-1-----
NMEN374833:0:Tno--0-1-----
NMUL323848:3:Tyes--0-------
NPHA348780:2:Tyes--------0-
NSP103690:6:Tyes--0-2520-----
NSP35761:1:Tyes0979585-22790981982980979
NSP387092:0:Tyes0----0--387-
NWIN323098:0:Tyes11305---1-01851305
OANT439375:4:Tyes01-3-03421
OANT439375:5:Tyes----0-----
OCAR504832:0:Tyes4204210423-420423424422421
OIHE221109:0:Tyes--1-0-----
PABY272844:0:Tyes-0-------0
PACN267747:0:Tyes43425-42641023
PAER178306:0:Tyes-758-----0759758
PAER208963:0:Tyes3416036754
PAER208964:0:Tno4361741023
PARC259536:0:Tyes2315025643
PARS340102:0:Tyes-1------01
PENT384676:0:Tyes1231-0-------
PFLU205922:0:Tyes0-3393-------
PFLU216595:1:Tyes2188-0-1-----
PFLU220664:0:Tyes--1771-0-----
PHAL326442:1:Tyes--0-------
PHOR70601:0:Tyes-0--------
PLUM243265:0:Fyes--0-681-----
PMEN399739:0:Tyes0-1926-21050----
PMUL272843:1:Tyes-1031868-1087---01031
PNAP365044:8:Tyes4371641023
PPRO298386:1:Tyes-324------0324
PPRO298386:2:Tyes--1-0-----
PPUT160488:0:Tno1683-0-------
PPUT351746:0:Tyes3216-0-------
PPUT76869:0:Tno1200-0--1200----
PSP296591:2:Tyes4371641023
PSP56811:2:Tyes2-1402453-
PSTU379731:0:Tyes2517027865
PSYR205918:0:Tyes166---0166----
PSYR223283:2:Tyes1734-0-15621734----
PTHE370438:0:Tyes--0-604-----
RCAS383372:0:Tyes--0-954-----
RDEN375451:4:Tyes01-3-03421
RETL347834:5:Tyes49---049----
REUT264198:2:Tyes016436503421
REUT381666:0:Tyes450-14-865
REUT381666:1:Tyes---0--0---
RFER338969:1:Tyes189718989761900018971900190118991898
RLEG216596:6:Tyes0----0----
RMET266264:2:Tyes011331403421
RPAL316056:0:Tyes-0--------
RPAL316058:0:Tyes-0--------
RPOM246200:1:Tyes--------0-
RSOL267608:0:Tyes0163703421
RSP101510:3:Fyes6196-2094-06196----
RSP357808:0:Tyes--1039-0-----
RSPH349102:5:Tyes--------0-
RXYL266117:0:Tyes011395-159103421
SACI56780:0:Tyes--0-------
SALA317655:1:Tyes0----0----
SARE391037:0:Tyes021323-139539574532
SAUR158878:1:Tno09---0-689
SAUR158879:1:Tno09---0-689
SAUR196620:0:Tno011---0-81011
SAUR273036:0:Tno09---0-689
SAUR282458:0:Tno08---0-578
SAUR282459:0:Tno09---0-689
SAUR359786:1:Tno0----0-68-
SAUR359787:1:Tno0----0-79-
SAUR367830:3:Tno010---0-7910
SAUR418127:0:Tyes09---0-689
SAUR426430:0:Tno09---0-689
SAUR93061:0:Fno010---0-7910
SAUR93062:1:Tno08---0-578
SAVE227882:1:Fyes0-1372-13730----
SBAL399599:3:Tyes-01657-1658---1682-
SBAL402882:1:Tno--0-1---22-
SBOY300268:1:Tyes4351641023
SCO:2:Fyes275463556244-280427540635263546355
SDYS300267:1:Tyes34135403673534
SENT209261:0:Tno4351641023
SENT220341:0:Tno1821811179018256180181
SENT295319:0:Tno17517415017556173174
SENT321314:2:Tno1831821840185183180179181182
SENT454169:2:Tno1921911930194192189188190191
SEPI176279:1:Tyes07-----467
SEPI176280:0:Tno07-----467
SERY405948:0:Tyes0271--33740269268270271
SFLE198214:0:Tyes4983150498564993
SFLE373384:0:Tno2315025643
SFUM335543:0:Tyes----0-----
SGOR29390:0:Tyes--0-1-----
SHAE279808:0:Tyes70---7-310
SHAL458817:0:Tyes3355335615033555335933573356
SHIGELLA:0:Tno49631504965643
SLAC55218:1:Fyes----1398---0-
SLOI323850:0:Tyes--610-609---30870
SMED366394:2:Tyes0---3630----
SMEL266834:1:Tyes0---929-----
SMUT210007:0:Tyes--0-1-----
SONE211586:1:Tyes-02512-2513----2884
SPEA398579:0:Tno-20841-0---20833150
SPNE1313:0:Tyes----0-----
SPNE170187:0:Tyes--0-1-----
SPNE171101:0:Tno----0-----
SPNE487213:0:Tno--0-1-----
SPNE487214:0:Tno--0-1-----
SPNE488221:0:Tno--0-1-----
SPRO399741:1:Tyes18319120181023
SSAP342451:2:Tyes----0-----
SSED425104:0:Tyes1058105901061105610581061106210601059
SSON300269:1:Tyes2752742770278275272271273274
SSP292414:2:Tyes----0-----
SSP387093:0:Tyes0---------
SSP94122:1:Tyes-305922-21---03059
SSUI391295:0:Tyes--0-------
SSUI391296:0:Tyes--0-------
STHE264199:0:Tyes--0-------
STHE292459:0:Tyes-0134-427---1961861
STHE299768:0:Tno--0-------
STOK273063:0:Tyes--------0-
STRO369723:0:Tyes021408-162436794532
STYP99287:1:Tyes1861851870188186183182184185
TDEN292415:0:Tyes3416036754
TFUS269800:0:Tyes--832-0-----
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