CANDIDATE ID: 118

CANDIDATE ID: 118

NUMBER OF GENES: 10
AVERAGE SCORE:    9.9946920e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7665 (lptA) (b3200)
   Products of gene:
     - YHBN-MONOMER (LptA)
     - ABC-53-CPLX (LptABCFG ABC transporter)

- G7663 (kdsC) (b3198)
   Products of gene:
     - G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
     - KDO-8PPHOSPHAT-CPLX (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase)
       Reactions:
        3-deoxy-D-manno-octulosonate 8-P + H2O  ->  3-deoxy-D-manno-octulosonate + phosphate
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)
         PWY-5111 (PWY-5111)
         PWY-1269 (CMP-KDO biosynthesis I)

- G7662 (kdsD) (b3197)
   Products of gene:
     - G7662-MONOMER (D-arabinose 5-phosphate isomerase)
     - CPLX0-1262 (D-arabinose 5-phosphate isomerase)
       Reactions:
        D-arabinose 5-phosphate  =  D-ribulose-5-phosphate
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)
         PWY-1269 (CMP-KDO biosynthesis I)

- EG12147 (npr) (b3206)
   Products of gene:
     - EG12147-MONOMER (phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr)

- EG12146 (yhbJ) (b3205)
   Products of gene:
     - EG12146-MONOMER (predicted P-loop containing ATPase)

- EG11682 (ptsN) (b3204)
   Products of gene:
     - EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)

- EG11681 (hpf) (b3203)
   Products of gene:
     - EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)

- EG11680 (lptB) (b3201)
   Products of gene:
     - YHBG-MONOMER (LptB)
     - ABC-53-CPLX (LptABCFG ABC transporter)

- EG10898 (rpoN) (b3202)
   Products of gene:
     - RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
     - RNAP54-CPLX (RNA polymerase sigma 54)

- EG10610 (mreD) (b3249)
   Products of gene:
     - EG10610-MONOMER (MreD)
     - CPLX0-8 (longitudinal peptidoglycan synthesis/chromosome segregation-directing complex)



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 147
Effective number of orgs (counting one per cluster within 468 clusters): 93

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175810
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295310
YPES386656 ncbi Yersinia pestis Pestoides F10
YPES377628 ncbi Yersinia pestis Nepal51610
YPES360102 ncbi Yersinia pestis Antiqua10
YPES349746 ncbi Yersinia pestis Angola10
YPES214092 ncbi Yersinia pestis CO9210
YPES187410 ncbi Yersinia pestis KIM 1010
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808110
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A10
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 31101810
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC1033110
XFAS405440 ncbi Xylella fastidiosa M129
XFAS183190 ncbi Xylella fastidiosa Temecula19
XFAS160492 ncbi Xylella fastidiosa 9a5c9
XCAM487884 Xanthomonas campestris pv. paulliniae10
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-1010
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 800410
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 3391310
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 30610
VVUL216895 ncbi Vibrio vulnificus CMCP610
VVUL196600 ncbi Vibrio vulnificus YJ01610
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106339
VFIS312309 ncbi Vibrio fischeri ES11410
VEIS391735 ncbi Verminephrobacter eiseniae EF01-29
VCHO345073 ncbi Vibrio cholerae O39510
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696110
TTUR377629 ncbi Teredinibacter turnerae T790110
TDEN292415 ncbi Thiobacillus denitrificans ATCC 2525910
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT210
SSP94122 ncbi Shewanella sp. ANA-310
SSON300269 ncbi Shigella sonnei Ss04610
SSED425104 ncbi Shewanella sediminis HAW-EB310
SPRO399741 ncbi Serratia proteamaculans 56810
SPEA398579 ncbi Shewanella pealeana ATCC 7003459
SONE211586 ncbi Shewanella oneidensis MR-110
SLOI323850 ncbi Shewanella loihica PV-410
SHIGELLA ncbi Shigella flexneri 2a str. 2457T10
SHAL458817 ncbi Shewanella halifaxensis HAW-EB410
SGLO343509 ncbi Sodalis glossinidius morsitans10
SFLE373384 ncbi Shigella flexneri 5 str. 840110
SFLE198214 ncbi Shigella flexneri 2a str. 30110
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47610
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915010
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1810
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty210
SDYS300267 ncbi Shigella dysenteriae Sd19710
SDEN318161 ncbi Shewanella denitrificans OS21710
SDEG203122 ncbi Saccharophagus degradans 2-4010
SBOY300268 ncbi Shigella boydii Sb22710
SBAL402882 ncbi Shewanella baltica OS18510
SBAL399599 ncbi Shewanella baltica OS19510
SACI56780 ncbi Syntrophus aciditrophicus SB9
RSOL267608 ncbi Ralstonia solanacearum GMI10009
RMET266264 ncbi Ralstonia metallidurans CH349
REUT381666 ncbi Ralstonia eutropha H169
REUT264198 ncbi Ralstonia eutropha JMP1349
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC300010
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a10
PSTU379731 ncbi Pseudomonas stutzeri A150110
PSP296591 ncbi Polaromonas sp. JS6669
PPUT76869 ncbi Pseudomonas putida GB-110
PPUT351746 ncbi Pseudomonas putida F110
PPUT160488 ncbi Pseudomonas putida KT244010
PPRO298386 ncbi Photobacterium profundum SS910
PNAP365044 ncbi Polaromonas naphthalenivorans CJ29
PMEN399739 ncbi Pseudomonas mendocina ymp10
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO110
PING357804 ncbi Psychromonas ingrahamii 3710
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC12510
PFLU220664 ncbi Pseudomonas fluorescens Pf-510
PFLU216595 ncbi Pseudomonas fluorescens SBW2510
PFLU205922 ncbi Pseudomonas fluorescens Pf0-110
PENT384676 ncbi Pseudomonas entomophila L4810
PCAR338963 ncbi Pelobacter carbinolicus DSM 23809
PATL342610 ncbi Pseudoalteromonas atlantica T6c10
PAER208964 ncbi Pseudomonas aeruginosa PAO110
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA1410
NOCE323261 ncbi Nitrosococcus oceani ATCC 197079
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E9
MSP400668 ncbi Marinomonas sp. MWYL19
MPET420662 ncbi Methylibium petroleiphilum PM110
MFLA265072 ncbi Methylobacillus flagellatus KT9
MAQU351348 ncbi Marinobacter aquaeolei VT810
LCHO395495 ncbi Leptothrix cholodnii SP-610
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857810
JSP375286 ncbi Janthinobacterium sp. Marseille10
ILOI283942 ncbi Idiomarina loihiensis L2TR10
HHAL349124 ncbi Halorhodospira halophila SL110
HCHE349521 ncbi Hahella chejuensis KCTC 239610
HARS204773 ncbi Herminiimonas arsenicoxydans10
GURA351605 ncbi Geobacter uraniireducens Rf49
GSUL243231 ncbi Geobacter sulfurreducens PCA9
GMET269799 ncbi Geobacter metallireducens GS-159
ESP42895 Enterobacter sp.10
EFER585054 ncbi Escherichia fergusonii ATCC 3546910
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H710
ECOL585397 ncbi Escherichia coli ED1a10
ECOL585057 ncbi Escherichia coli IAI3910
ECOL585056 ncbi Escherichia coli UMN02610
ECOL585055 ncbi Escherichia coli 5598910
ECOL585035 ncbi Escherichia coli S8810
ECOL585034 ncbi Escherichia coli IAI110
ECOL481805 ncbi Escherichia coli ATCC 873910
ECOL469008 ncbi Escherichia coli BL21(DE3)10
ECOL439855 ncbi Escherichia coli SMS-3-510
ECOL413997 ncbi Escherichia coli B str. REL60610
ECOL409438 ncbi Escherichia coli SE1110
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8910
ECOL362663 ncbi Escherichia coli 53610
ECOL331111 ncbi Escherichia coli E24377A10
ECOL316407 ncbi Escherichia coli K-12 substr. W311010
ECOL199310 ncbi Escherichia coli CFT07310
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104310
DARO159087 ncbi Dechloromonas aromatica RCB10
CVIO243365 ncbi Chromobacterium violaceum ATCC 1247210
CSAL290398 ncbi Chromohalobacter salexigens DSM 304310
CPSY167879 ncbi Colwellia psychrerythraea 34H10
CJAP155077 Cellvibrio japonicus10
BVIE269482 ncbi Burkholderia vietnamiensis G49
BTHA271848 ncbi Burkholderia thailandensis E26410
BSP36773 Burkholderia sp.10
BPSE320373 ncbi Burkholderia pseudomallei 6689
BPSE320372 ncbi Burkholderia pseudomallei 1710b10
BPSE272560 ncbi Burkholderia pseudomallei K9624310
BPET94624 Bordetella petrii9
BPAR257311 ncbi Bordetella parapertussis 128229
BMAL320389 ncbi Burkholderia mallei NCTC 1024710
BMAL320388 ncbi Burkholderia mallei SAVP110
BMAL243160 ncbi Burkholderia mallei ATCC 2334410
BCEN331272 ncbi Burkholderia cenocepacia HI242410
BCEN331271 ncbi Burkholderia cenocepacia AU 105410
BBRO257310 ncbi Bordetella bronchiseptica RB509
BAMB398577 ncbi Burkholderia ambifaria MC40-610
BAMB339670 ncbi Burkholderia ambifaria AMMD10
ASP76114 ncbi Aromatoleum aromaticum EbN110
ASP62928 ncbi Azoarcus sp. BH7210
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44910
AHYD196024 Aeromonas hydrophila dhakensis10
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 2327010
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-110
ABOR393595 ncbi Alcanivorax borkumensis SK210
ABAU360910 ncbi Bordetella avium 197N9
AAVE397945 ncbi Acidovorax citrulli AAC00-19


Names of the homologs of the genes in the group in each of these orgs
  G7665   G7663   G7662   EG12147   EG12146   EG11682   EG11681   EG11680   EG10898   EG10610   
YPSE349747 YPSIP31758_0443YPSIP31758_0445YPSIP31758_0446YPSIP31758_0437YPSIP31758_0438YPSIP31758_0439YPSIP31758_0440YPSIP31758_0442YPSIP31758_0441YPSIP31758_0400
YPSE273123 YPTB3524YPTB3522YPTB3521YPTB3530YPTB3529YPTB3528YPTB3527YPTB3525YPTB3526YPTB3563
YPES386656 YPDSF_0317YPDSF_0319YPDSF_0320YPDSF_0310YPDSF_0311YPDSF_0312YPDSF_0313YPDSF_0316YPDSF_0315YPDSF_0274
YPES377628 YPN_3462YPN_3460YPN_3459YPN_3469YPN_3468YPN_3467YPN_3466YPN_3463YPN_3464YPN_3504
YPES360102 YPA_3723YPA_3725YPA_3726YPA_3716YPA_3717YPA_3718YPA_3719YPA_3722YPA_3721YPA_3680
YPES349746 YPANGOLA_A1151YPANGOLA_A1149YPANGOLA_A1148YPANGOLA_A1157YPANGOLA_A1156YPANGOLA_A1155YPANGOLA_A1154YPANGOLA_A1152YPANGOLA_A1153YPANGOLA_A1196
YPES214092 YPO3580YPO3578YPO3577YPO3587YPO3586YPO3585YPO3279YPO3581YPO3582YPO3667
YPES187410 Y0152Y0150Y0149Y0159Y0158Y0157Y0156Y0153Y0154Y0199
YENT393305 YE3757YE3755YE3754YE3763YE3762YE3761YE3760YE3758YE3759YE3803
XORY360094 XOOORF_4032XOOORF_4030XOOORF_4029XOOORF_4041XOOORF_4038XOOORF_4036XOOORF_4035XOOORF_4033XOOORF_4034XOOORF_0923
XORY342109 XOO1185XOO1187XOO1188XOO1176XOO1179XOO1181XOO1182XOO1184XOO1183XOO3746
XORY291331 XOO1286XOO1288XOO1289XOO1278XOO1280XOO1282XOO1283XOO1285XOO1284XOO3969
XFAS405440 XFASM12_0758XFASM12_0760XFASM12_0761XFASM12_0751XFASM12_0753XFASM12_0755XFASM12_0757XFASM12_0756XFASM12_0670
XFAS183190 PD_0639PD_0641PD_0642PD_0632PD_0634PD_0636PD_0638PD_0637PD_0559
XFAS160492 XF1410XF1412XF1413XF1403XF1405XF1407XF1409XF1408XF1311
XCAM487884 XCC-B100_1360XCC-B100_1362XCC-B100_1363XCC-B100_1352XCC-B100_1354XCC-B100_1356XCC-B100_1357XCC-B100_1359XCC-B100_1358XCC-B100_0726
XCAM316273 XCAORF_3171XCAORF_3169XCAORF_3168XCAORF_3179XCAORF_3177XCAORF_3175XCAORF_3174XCAORF_3172XCAORF_3173XCAORF_3804
XCAM314565 XC_1313XC_1315XC_1316XC_1305XC_1307XC_1309XC_1310XC_1312XC_1311XC_0693
XCAM190485 XCC2800XCC2798XCC2797XCC2808XCC2806XCC2804XCC2803XCC2801XCC2802XCC3468
XAXO190486 XAC2970XAC2968XAC2967XAC2978XAC2976XAC2974XAC2973XAC2971XAC2972XAC0658
VVUL216895 VV1_0690VV1_0688VV1_0687VV1_0697VV1_0695VV1_0694VV1_0693VV1_0691VV1_0692VV1_1451
VVUL196600 VV0450VV0452VV0453VV0444VV0445VV0446VV0447VV0449VV0448VV2932
VPAR223926 VP2668VP2666VP2674VP2673VP2672VP2671VP2669VP2670VP2689
VFIS312309 VF0389VF0391VF0392VF0383VF0384VF0385VF0386VF0388VF0387VF0374
VEIS391735 VEIS_0576VEIS_0153VEIS_0154VEIS_1281VEIS_1053VEIS_0601VEIS_0600VEIS_0577VEIS_0578
VCHO345073 VC0395_A2107VC0395_A2105VC0395_A2104VC0395_A2113VC0395_A2112VC0395_A2111VC0395_A2110VC0395_A2108VC0395_A2109VC0395_A2836
VCHO VC2527VC2524VC2523VC2533VC2532VC2531VC2530VC2528VC2529VC0417
TTUR377629 TERTU_3819TERTU_3817TERTU_3816TERTU_3825TERTU_3824TERTU_3823TERTU_3543TERTU_3820TERTU_3821TERTU_3832
TDEN292415 TBD_0535TBD_0537TBD_0538TBD_2413TBD_0529TBD_0531TBD_0532TBD_0534TBD_0533TBD_0262
STYP99287 STM3318STM3316STM3315STM3324STM3323STM3322STM3321STM3319STM3320STM3372
SSP94122 SHEWANA3_0674SHEWANA3_0676SHEWANA3_0677SHEWANA3_0668SHEWANA3_0669SHEWANA3_0670SHEWANA3_0671SHEWANA3_0673SHEWANA3_0672SHEWANA3_3646
SSON300269 SSO_3348SSO_3346SSO_3345SSO_3354SSO_3353SSO_3352SSO_3351SSO_3349SSO_3350SSO_3390
SSED425104 SSED_0728SSED_0730SSED_0731SSED_0722SSED_0723SSED_0724SSED_0725SSED_0727SSED_0726SSED_0560
SPRO399741 SPRO_4365SPRO_4363SPRO_4362SPRO_4371SPRO_4370SPRO_4369SPRO_4368SPRO_4366SPRO_4367SPRO_4409
SPEA398579 SPEA_3614SPEA_3612SPEA_3611SPEA_3621SPEA_3618SPEA_3617SPEA_3615SPEA_3616SPEA_3752
SONE211586 SO_3959SO_3957SO_3956SO_3965SO_3964SO_3963SO_3962SO_3960SO_3961SO_4096
SLOI323850 SHEW_3309SHEW_3307SHEW_3306SHEW_3315SHEW_3314SHEW_3313SHEW_3312SHEW_3310SHEW_3311SHEW_0405
SHIGELLA YHBNYRBIYRBHPTSOYHBJPTSNYHBHYHBGRPONMRED
SHAL458817 SHAL_3703SHAL_3701SHAL_3700SHAL_3709SHAL_3708SHAL_3707SHAL_3706SHAL_3704SHAL_3705SHAL_3837
SGLO343509 SG0201SG0203SG0204SG0195SG0196SG0197SG0198SG0200SG0199SG0158
SFLE373384 SFV_3230SFV_3228SFV_3227SFV_3236SFV_3235SFV_3234SFV_3233SFV_3231SFV_3232SFV_3275
SFLE198214 AAN44706.1AAN44704.1AAN44703.1AAN44712.1AAN44711.1AAN44710.1AAN44709.1AAN44707.1AAN44708.1AAN44751.1
SENT454169 SEHA_C3615SEHA_C3613SEHA_C3612SEHA_C3621SEHA_C3620SEHA_C3619SEHA_C3618SEHA_C3616SEHA_C3617SEHA_C3670
SENT321314 SCH_3256SCH_3254SCH_3253SCH_3262SCH_3261SCH_3260SCH_3259SCH_3257SCH_3258SCH_3310
SENT295319 SPA3185SPA3183SPA3182SPA3191SPA3190SPA3189SPA3188SPA3186SPA3187SPA3239
SENT220341 STY3497STY3495STY3494STY3503STY3502STY3501STY3500STY3498STY3499STY3552
SENT209261 T3235T3233T3232T3241T3240T3239T3238T3236T3237T3287
SDYS300267 SDY_3381SDY_3379SDY_3378SDY_3387SDY_3386SDY_3385SDY_3384SDY_3382SDY_3383SDY_3424
SDEN318161 SDEN_0491SDEN_0493SDEN_0494SDEN_0485SDEN_0486SDEN_0487SDEN_0488SDEN_0490SDEN_0489SDEN_3332
SDEG203122 SDE_3177SDE_3175SDE_3174SDE_3182SDE_3181SDE_3180SDE_0532SDE_3178SDE_3179SDE_3190
SBOY300268 SBO_3182SBO_3184SBO_3185SBO_3176SBO_3177SBO_3178SBO_2635SBO_3181SBO_3180SBO_3139
SBAL402882 SHEW185_0688SHEW185_0690SHEW185_0691SHEW185_0682SHEW185_0683SHEW185_0684SHEW185_0685SHEW185_0687SHEW185_0686SHEW185_0499
SBAL399599 SBAL195_0718SBAL195_0720SBAL195_0721SBAL195_0712SBAL195_0713SBAL195_0714SBAL195_0715SBAL195_0717SBAL195_0716SBAL195_0520
SACI56780 SYN_00947SYN_00949SYN_00471SYN_01728SYN_00941SYN_00943SYN_00944SYN_00946SYN_00945
RSOL267608 RSC0410RSC0412RSC0413RSC0347RSC0403RSC0406RSC0407RSC0409RSC0408
RMET266264 RMET_0305RMET_0307RMET_0245RMET_0297RMET_0300RMET_0302RMET_0304RMET_0303RMET_0053
REUT381666 H16_A0389H16_A0391H16_A0325H16_A0381H16_A0384H16_A0386H16_A0388H16_A0387H16_A0115
REUT264198 REUT_A0357REUT_A0359REUT_A0296REUT_A0350REUT_A0353REUT_A0354REUT_A0356REUT_A0355REUT_A0078
PSYR223283 PSPTO_4451PSPTO_4449PSPTO_4448PSPTO_4457PSPTO_4456PSPTO_4455PSPTO_4454PSPTO_4452PSPTO_4453PSPTO_4470
PSYR205918 PSYR_4145PSYR_4143PSYR_4142PSYR_4151PSYR_4150PSYR_4149PSYR_4148PSYR_4146PSYR_4147PSYR_4161
PSTU379731 PST_1033PST_1035PST_1036PST_1027PST_1028PST_1029PST_1030PST_1032PST_1031PST_1017
PSP296591 BPRO_4487BPRO_4897BPRO_4898BPRO_0298BPRO_1300BPRO_4612BPRO_4613BPRO_4486BPRO_4485
PPUT76869 PPUTGB1_0961PPUTGB1_0963PPUTGB1_0964PPUTGB1_0955PPUTGB1_0956PPUTGB1_0957PPUTGB1_0958PPUTGB1_0960PPUTGB1_0959PPUTGB1_0942
PPUT351746 PPUT_0993PPUT_0995PPUT_0996PPUT_0987PPUT_0988PPUT_0989PPUT_0990PPUT_0992PPUT_0991PPUT_0975
PPUT160488 PP_0954PP_0956PP_0957PP_0948PP_0949PP_0950PP_0951PP_0953PP_0952PP_0935
PPRO298386 PBPRA3253PBPRA3251PBPRA3250PBPRA3259PBPRA3258PBPRA3257PBPRA3256PBPRA3254PBPRA3255PBPRA3268
PNAP365044 PNAP_3708PNAP_4107PNAP_4108PNAP_0238PNAP_0906PNAP_3793PNAP_3794PNAP_3709PNAP_3710
PMEN399739 PMEN_0872PMEN_0874PMEN_0875PMEN_0866PMEN_0867PMEN_0868PMEN_0869PMEN_0871PMEN_0870PMEN_0858
PLUM243265 PLU4039PLU4037PLU4036PLU4045PLU4044PLU4043PLU4042PLU4040PLU4041PLU4069
PING357804 PING_2890PING_2888PING_0617PING_2895PING_2894PING_2893PING_0288PING_2891PING_2892PING_1124
PHAL326442 PSHAA2549PSHAA2547PSHAA2546PSHAA2555PSHAA2554PSHAA2553PSHAA2552PSHAA2550PSHAA2551PSHAA2680
PFLU220664 PFL_0917PFL_0919PFL_0920PFL_0911PFL_0912PFL_0913PFL_0914PFL_0916PFL_0915PFL_0898
PFLU216595 PFLU0884PFLU0886PFLU0887PFLU0878PFLU0879PFLU0880PFLU0881PFLU0883PFLU0882PFLU0865
PFLU205922 PFL_0859PFL_0861PFL_0862PFL_0853PFL_0854PFL_0855PFL_0856PFL_0858PFL_0857PFL_0840
PENT384676 PSEEN1095PSEEN1097PSEEN1098PSEEN1089PSEEN1090PSEEN1091PSEEN1092PSEEN1094PSEEN1093PSEEN1076
PCAR338963 PCAR_1940PCAR_1942PCAR_1943PCAR_1930PCAR_1935PCAR_1936PCAR_1937PCAR_1939PCAR_1938
PATL342610 PATL_0566PATL_0564PATL_0563PATL_0572PATL_0571PATL_0570PATL_0569PATL_0567PATL_0568PATL_0185
PAER208964 PA4460PA4458PA4457PA4466PA4465PA4464PA4463PA4461PA4462PA4479
PAER208963 PA14_57920PA14_57900PA14_57890PA14_57980PA14_57970PA14_57960PA14_57950PA14_57930PA14_57940PA14_58120
NOCE323261 NOC_2791NOC_2789NOC_2788NOC_2799NOC_2797NOC_2795NOC_2794NOC_2792NOC_2793
MSUC221988 MS1715MS0995MS0996MS2180MS1718MS1717MS0352MS1716MS0593
MSP400668 MMWYL1_2416MMWYL1_1125MMWYL1_1123MMWYL1_2420MMWYL1_2419MMWYL1_3245MMWYL1_2417MMWYL1_2418MMWYL1_1939
MPET420662 MPE_A0150MPE_A3808MPE_A3809MPE_A0324MPE_A3336MPE_A0225MPE_A0226MPE_A0149MPE_A0148MPE_A0081
MFLA265072 MFLA_0140MFLA_0138MFLA_0137MFLA_0147MFLA_0145MFLA_0143MFLA_0141MFLA_0142MFLA_2493
MAQU351348 MAQU_2713MAQU_2711MAQU_2710MAQU_2719MAQU_2718MAQU_2717MAQU_2716MAQU_2714MAQU_2715MAQU_2726
LCHO395495 LCHO_4227LCHO_0183LCHO_0182LCHO_1031LCHO_3490LCHO_0472LCHO_0471LCHO_4226LCHO_4225LCHO_0502
KPNE272620 GKPORF_B2945GKPORF_B2943GKPORF_B2942GKPORF_B2951GKPORF_B2950GKPORF_B2949GKPORF_B2948GKPORF_B2946GKPORF_B2947GKPORF_B2995
JSP375286 MMA_3350MMA_3348MMA_3347MMA_0174MMA_3120MMA_3118MMA_3353MMA_3351MMA_3352MMA_0198
ILOI283942 IL0398IL0400IL0401IL0392IL0393IL0394IL0395IL0397IL0396IL0383
HHAL349124 HHAL_2124HHAL_2122HHAL_2121HHAL_2132HHAL_2130HHAL_2128HHAL_2127HHAL_2125HHAL_2126HHAL_1007
HCHE349521 HCH_05318HCH_05316HCH_05315HCH_05325HCH_05324HCH_05323HCH_05322HCH_05319HCH_05320HCH_05332
HARS204773 HEAR3107HEAR3105HEAR3104HEAR0148HEAR2885HEAR2883HEAR3110HEAR3108HEAR3109HEAR0170
GURA351605 GURA_2974GURA_2976GURA_2977GURA_2966GURA_2968GURA_0893GURA_2971GURA_2973GURA_2972
GSUL243231 GSU_1889GSU_1892GSU_1893GSU_1882GSU_1884GSU_0735GSU_1886GSU_1888GSU_1887
GMET269799 GMET_1281GMET_1279GMET_1278GMET_1288GMET_1286GMET_2604GMET_1284GMET_1282GMET_1283
ESP42895 ENT638_3636ENT638_3634ENT638_3633ENT638_3642ENT638_3641ENT638_3640ENT638_3639ENT638_3637ENT638_3638ENT638_3685
EFER585054 EFER_3177EFER_3175EFER_3174EFER_3183EFER_3182EFER_3181EFER_3180EFER_3178EFER_3179EFER_3226
ECOO157 YHBNYRBIYRBHPTSOYHBJPTSNYHBHYHBGRPONMRED
ECOL83334 ECS4079ECS4077ECS4076ECS4085ECS4084ECS4083ECS4082ECS4080ECS4081ECS4121
ECOL585397 ECED1_3858ECED1_3856ECED1_3855ECED1_3864ECED1_3863ECED1_3862ECED1_3861ECED1_3859ECED1_3860ECED1_3898
ECOL585057 ECIAI39_3695ECIAI39_3693ECIAI39_3692ECIAI39_3701ECIAI39_3700ECIAI39_3699ECIAI39_3698ECIAI39_3696ECIAI39_3697ECIAI39_3741
ECOL585056 ECUMN_3680ECUMN_3678ECUMN_3677ECUMN_3686ECUMN_3685ECUMN_3684ECUMN_3683ECUMN_3681ECUMN_3682ECUMN_3722
ECOL585055 EC55989_3618EC55989_3616EC55989_3615EC55989_3624EC55989_3623EC55989_3622EC55989_3621EC55989_3619EC55989_3620EC55989_3661
ECOL585035 ECS88_3583ECS88_3581ECS88_3580ECS88_3590ECS88_3588ECS88_3587ECS88_3586ECS88_3584ECS88_3585ECS88_3624
ECOL585034 ECIAI1_3348ECIAI1_3346ECIAI1_3345ECIAI1_3354ECIAI1_3353ECIAI1_3352ECIAI1_3351ECIAI1_3349ECIAI1_3350ECIAI1_3390
ECOL481805 ECOLC_0500ECOLC_0502ECOLC_0503ECOLC_0494ECOLC_0495ECOLC_0496ECOLC_0497ECOLC_0499ECOLC_0498ECOLC_0458
ECOL469008 ECBD_0542ECBD_0544ECBD_0545ECBD_0536ECBD_0537ECBD_0538ECBD_0539ECBD_0541ECBD_0540ECBD_0498
ECOL439855 ECSMS35_3496ECSMS35_3494ECSMS35_3493ECSMS35_3502ECSMS35_3501ECSMS35_3500ECSMS35_3499ECSMS35_3497ECSMS35_3498ECSMS35_3544
ECOL413997 ECB_03065ECB_03063ECB_03062ECB_03071ECB_03070ECB_03069ECB_03068ECB_03066ECB_03067ECB_03108
ECOL409438 ECSE_3484ECSE_3482ECSE_3481ECSE_3490ECSE_3489ECSE_3488ECSE_3487ECSE_3485ECSE_3486ECSE_3528
ECOL405955 APECO1_3235APECO1_3237APECO1_3238APECO1_3229APECO1_3230APECO1_3231APECO1_3232APECO1_3234APECO1_3233APECO1_3196
ECOL364106 UTI89_C3636UTI89_C3634UTI89_C3633UTI89_C3642UTI89_C3641UTI89_C3640UTI89_C3639UTI89_C3637UTI89_C3638UTI89_C3679
ECOL362663 ECP_3288ECP_3286ECP_3285ECP_3294ECP_3293ECP_3292ECP_3291ECP_3289ECP_3290ECP_3332
ECOL331111 ECE24377A_3688ECE24377A_3686ECE24377A_3685ECE24377A_3694ECE24377A_3693ECE24377A_3692ECE24377A_3691ECE24377A_3689ECE24377A_3690ECE24377A_3731
ECOL316407 ECK3189:JW3167:B3200ECK3187:JW3165:B3198ECK3186:JW3164:B3197ECK3195:JW3173:B3206ECK3194:JW3172:B3205ECK3193:JW3171:B3204ECK3192:JW3170:B3203ECK3190:JW3168:B3201ECK3191:JW3169:B3202ECK3237:JW3218:B3249
ECOL199310 C3960C3958C3957C3966C3965C3964C3963C3961C3962C4003
ECAR218491 ECA0290ECA0292ECA0293ECA0284ECA0285ECA0286ECA0287ECA0289ECA0288ECA0269
DARO159087 DARO_3421DARO_3419DARO_3418DARO_4083DARO_0070DARO_4147DARO_4148DARO_4150DARO_4149DARO_0114
CVIO243365 CV_3330CV_3328CV_3327CV_0815CV_3336CV_3334CV_3333CV_3331CV_3332CV_4359
CSAL290398 CSAL_2224CSAL_2222CSAL_2221CSAL_2230CSAL_2229CSAL_2228CSAL_2227CSAL_2225CSAL_2226CSAL_2238
CPSY167879 CPS_4541CPS_4539CPS_4538CPS_4547CPS_4546CPS_4545CPS_4544CPS_4542CPS_4543CPS_4558
CJAP155077 CJA_2803CJA_2801CJA_2800CJA_2810CJA_2809CJA_2808CJA_2807CJA_2804CJA_2806CJA_2815
BVIE269482 BCEP1808_2894BCEP1808_2892BCEP1808_2891BCEP1808_2961BCEP1808_2900BCEP1808_2898BCEP1808_2897BCEP1808_2895BCEP1808_2896
BTHA271848 BTH_I0488BTH_I0490BTH_I0491BTH_I0412BTH_I0482BTH_I0484BTH_I0485BTH_I0487BTH_I0486BTH_I0144
BSP36773 BCEP18194_A6119BCEP18194_A6117BCEP18194_A6116BCEP18194_A6190BCEP18194_A6125BCEP18194_A6123BCEP18194_A6122BCEP18194_A6120BCEP18194_A6121BCEP18194_A6463
BPSE320373 BURPS668_0583BURPS668_0585BURPS668_0586BURPS668_0473BURPS668_0577BURPS668_0579BURPS668_0582BURPS668_0581BURPS668_0168
BPSE320372 BURPS1710B_A0809BURPS1710B_A0811BURPS1710B_A0812BURPS1710B_A0698BURPS1710B_A0803BURPS1710B_A0805BURPS1710B_A0806BURPS1710B_A0808BURPS1710B_A0807BURPS1710B_A0387
BPSE272560 BPSL0535BPSL0537BPSL0538BPSL0439BPSL0529BPSL0531BPSL0532BPSL0534BPSL0533BPSL0184
BPET94624 BPET0452BPET0453BPET2830BPET0443BPET0447BPET0448BPET0449BPET0085BPET0429
BPAR257311 BPP4029BPP4028BPP1967BPP4038BPP4034BPP4033BPP4032BPP4336BPP4054
BMAL320389 BMA10247_2944BMA10247_2946BMA10247_2947BMA10247_2833BMA10247_2938BMA10247_2940BMA10247_2941BMA10247_2943BMA10247_2942BMA10247_2372
BMAL320388 BMASAVP1_A0074BMASAVP1_A0072BMASAVP1_A0071BMASAVP1_A0186BMASAVP1_A0080BMASAVP1_A0078BMASAVP1_A0077BMASAVP1_A0075BMASAVP1_A0076BMASAVP1_A2787
BMAL243160 BMA_3105BMA_3103BMA_3102BMA_3212BMA_3112BMA_3110BMA_3109BMA_3107BMA_3108BMA_0160
BCEN331272 BCEN2424_2789BCEN2424_2787BCEN2424_2786BCEN2424_2861BCEN2424_2795BCEN2424_2793BCEN2424_2792BCEN2424_2790BCEN2424_2791BCEN2424_3112
BCEN331271 BCEN_2175BCEN_2173BCEN_2172BCEN_2247BCEN_2181BCEN_2179BCEN_2178BCEN_2176BCEN_2177BCEN_2498
BBRO257310 BB4502BB4501BB2154BB4511BB4507BB4506BB4505BB4922BB4527
BAMB398577 BAMMC406_2707BAMMC406_2705BAMMC406_2704BAMMC406_2778BAMMC406_2713BAMMC406_2711BAMMC406_2710BAMMC406_2708BAMMC406_2709BAMMC406_3050
BAMB339670 BAMB_2849BAMB_2847BAMB_2846BAMB_2916BAMB_2855BAMB_2853BAMB_2852BAMB_2850BAMB_2851BAMB_3167
ASP76114 EBA1320EBA1316EBA1315EBD68EBA3650EBA3391EBB108EBA3394EBA3393EBA3038
ASP62928 AZO0791AZO0793AZO0794AZO3781AZO0399AZO0502AZO0503AZO0505AZO0504AZO0176
ASAL382245 ASA_0313ASA_0311ASA_0310ASA_0319ASA_0318ASA_0317ASA_0316ASA_0314ASA_0315ASA_3935
AHYD196024 AHA_3925AHA_3927AHA_3928AHA_3919AHA_3920AHA_3921AHA_3922AHA_3924AHA_3923AHA_0402
AFER243159 AFE_0083AFE_0081AFE_0080AFE_0091AFE_0089AFE_0087AFE_0086AFE_0084AFE_0085AFE_0538
AEHR187272 MLG_2228MLG_2226MLG_2225MLG_2234MLG_2233MLG_2232MLG_2231MLG_2229MLG_2230MLG_0171
ABOR393595 ABO_0554ABO_0556ABO_0557ABO_0548ABO_0549ABO_0550ABO_0551ABO_0553ABO_0552ABO_0532
ABAU360910 BAV3115BAV3114BAV1397BAV3158BAV3156BAV3155BAV3118BAV3349BAV3174
AAVE397945 AAVE_0417AAVE_4784AAVE_4785AAVE_0353AAVE_3603AAVE_4557AAVE_4558AAVE_0418AAVE_0419


Organism features enriched in list (features available for 140 out of the 147 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 8.938e-6792
Disease:Bubonic_plague 0.000176566
Disease:Dysentery 0.000176566
Disease:Gastroenteritis 0.00006541013
Endospores:No 9.061e-630211
GC_Content_Range4:0-40 9.260e-302213
GC_Content_Range4:40-60 3.992e-1187224
GC_Content_Range4:60-100 0.000166151145
GC_Content_Range7:30-40 3.691e-212166
GC_Content_Range7:50-60 3.970e-1255107
GC_Content_Range7:60-70 0.000013351134
Genome_Size_Range5:2-4 7.072e-1019197
Genome_Size_Range5:4-6 8.992e-2898184
Genome_Size_Range5:6-10 0.00006562347
Genome_Size_Range9:2-3 1.820e-79120
Genome_Size_Range9:3-4 0.00510531077
Genome_Size_Range9:4-5 1.077e-84696
Genome_Size_Range9:5-6 8.220e-155288
Genome_Size_Range9:6-8 2.944e-62238
Gram_Stain:Gram_Neg 6.533e-24128333
Habitat:Multiple 0.005305354178
Habitat:Specialized 0.0089323653
Motility:No 1.139e-911151
Motility:Yes 1.826e-14103267
Oxygen_Req:Anaerobic 7.729e-77102
Oxygen_Req:Facultative 1.624e-876201
Pathogenic_in:No 0.000375638226
Pathogenic_in:Plant 0.00005511115
Shape:Coccus 1.081e-8282
Shape:Rod 2.176e-19126347
Shape:Spiral 0.0007440134
Temp._range:Mesophilic 0.0006208126473
Temp._range:Psychrophilic 0.006700369



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 112
Effective number of orgs (counting one per cluster within 468 clusters): 98

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPEN368408 ncbi Thermofilum pendens Hrk 51
TMAR243274 ncbi Thermotoga maritima MSB81
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 71
SSOL273057 ncbi Sulfolobus solfataricus P21
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA11
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1291
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G371
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEI306537 ncbi Corynebacterium jeikeium K4111
BXEN266265 ncbi Burkholderia xenovorans LB4001
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR234826 ncbi Anaplasma marginale St. Maries0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G7665   G7663   G7662   EG12147   EG12146   EG11682   EG11681   EG11680   EG10898   EG10610   
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX953
TWHI218496
TWHI203267
TVOL273116
TROS309801
TPEN368408 TPEN_1091
TMAR243274 TM_1054
TKOD69014
TACI273075
STRO369723 STROP_3101
STOK273063 ST1422
SSOL273057 SSO0094
SMAR399550
SACI330779
RSP357808 ROSERS_3303
RSP101510 RHA1_RO07174
RALB246199 GRAORF_1682
PTOR263820
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
OTSU357244
NSEN222891
NPHA348780
NFAR247156 NFA35930
MVAN350058 MVAN_2698
MTUB419947 MRA_1430
MTUB336982 TBFG_11450
MTHE349307
MTHE187420 MTH1071
MTBRV RV1421
MTBCDC MT1464
MSYN262723
MSTA339860
MSP189918 MKMS_2443
MSP164757 MJLS_2437
MSP164756 MMCS_2396
MSED399549
MPUL272635
MPNE272634 MPN053
MMYC272632 MSC_0842
MMOB267748 MMOB4060
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML0563
MLAB410358
MKAN190192
MJAN243232
MHYO295358 MHP628
MHYO262722 MHP7448_0609
MHYO262719 MHJ_0611
MHUN323259
MGIL350054 MFLV_3714
MGEN243273 MG_041
MFLO265311 MFL181
MCAP340047 MCAP_0853
MBUR259564
MBOV410289 BCG_1482
MBOV233413 MB1456
MBAR269797
MAVI243243 MAV_3359
MART243272
MAEO419665
MACE188937 MA3766
MABS561007 MAB_2783C
LXYL281090 LXX11490
KRAD266940 KRAD_2934
IHOS453591
HWAL362976 HQ2708A
HSP64091
HSAL478009
HMUK485914
HBUT415426
FSP1855 FRANEAN1_2060
FSP106370 FRANCCI3_1634
FALN326424 FRAAL4592
ERUM302409
ERUM254945
ECHA205920
ECAN269484
DSP255470
DSP216389
DETH243164
CSUL444179
CMET456442
CMAQ397948
CKOR374847 KCR_1255
CJEI306537 JK1004
BXEN266265 BXE_B1172
BSP107806
BAPH372461
BAPH198804
AYEL322098
AURANTIMONAS
APHA212042
APER272557
ANAE240017 ANA_0711
AMAR234826
AFUL224325


Organism features enriched in list (features available for 103 out of the 112 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.009489059
Arrangment:Chains 6.695e-6392
Arrangment:Pairs 0.00086559112
Arrangment:Singles 0.000615865286
Disease:Tuberculosis 0.005382633
Endospores:No 1.228e-1472211
Endospores:Yes 0.0015347253
GC_Content_Range7:0-30 0.00002002047
GC_Content_Range7:30-40 0.000932517166
GC_Content_Range7:50-60 0.008760911107
Genome_Size_Range5:0-2 8.500e-1155155
Genome_Size_Range5:2-4 0.003955724197
Genome_Size_Range5:4-6 0.000210718184
Genome_Size_Range9:0-1 6.897e-101927
Genome_Size_Range9:1-2 0.000332036128
Genome_Size_Range9:3-4 0.0017988577
Genome_Size_Range9:4-5 0.0067071996
Gram_Stain:Gram_Neg 4.462e-1129333
Habitat:Multiple 8.643e-614178
Habitat:Specialized 0.00001162253
Motility:No 0.000046943151
Motility:Yes 0.001360534267
Optimal_temp.:- 0.003806134257
Optimal_temp.:100 0.005382633
Optimal_temp.:35-40 0.005382633
Optimal_temp.:85 0.000928044
Oxygen_Req:Anaerobic 3.425e-635102
Oxygen_Req:Facultative 0.000121220201
Pathogenic_in:Human 7.253e-619213
Pathogenic_in:No 0.004414751226
Pathogenic_in:Ruminant 0.005382633
Shape:Irregular_coccus 4.982e-141717
Shape:Rod 1.449e-934347
Shape:Sphere 4.134e-91519
Temp._range:Hyperthermophilic 1.124e-101823
Temp._range:Mesophilic 7.063e-863473
Temp._range:Thermophilic 0.00751641235



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 5
Effective number of orgs (counting one per cluster within 468 clusters): 5

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 23270 0.0012512129910
HHAL349124 ncbi Halorhodospira halophila SL1 0.0022957138010
TDEN292415 ncbi Thiobacillus denitrificans ATCC 25259 0.0055152150610
ABOR393595 ncbi Alcanivorax borkumensis SK2 0.0095055159010
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-1 0.0096869159310


Names of the homologs of the genes in the group in each of these orgs
  G7665   G7663   G7662   EG12147   EG12146   EG11682   EG11681   EG11680   EG10898   EG10610   
AFER243159 AFE_0083AFE_0081AFE_0080AFE_0091AFE_0089AFE_0087AFE_0086AFE_0084AFE_0085AFE_0538
HHAL349124 HHAL_2124HHAL_2122HHAL_2121HHAL_2132HHAL_2130HHAL_2128HHAL_2127HHAL_2125HHAL_2126HHAL_1007
TDEN292415 TBD_0535TBD_0537TBD_0538TBD_2413TBD_0529TBD_0531TBD_0532TBD_0534TBD_0533TBD_0262
ABOR393595 ABO_0554ABO_0556ABO_0557ABO_0548ABO_0549ABO_0550ABO_0551ABO_0553ABO_0552ABO_0532
AEHR187272 MLG_2228MLG_2226MLG_2225MLG_2234MLG_2233MLG_2232MLG_2231MLG_2229MLG_2230MLG_0171


Organism features enriched in list (features available for 5 out of the 5 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Genome_Size_Range5:2-4 0.00425845197



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951270.6603
AST-PWY (arginine degradation II (AST pathway))120960.6489
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181330.6465
GLYCOCAT-PWY (glycogen degradation I)2461400.6338
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251270.5817
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761090.5666
PWY-5918 (heme biosynthesis I)2721380.5627
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001440.5539
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149970.5481
PWY-5148 (acyl-CoA hydrolysis)2271220.5376
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861380.5350
PWY-1269 (CMP-KDO biosynthesis I)3251450.5170
GALACTITOLCAT-PWY (galactitol degradation)73610.5145
PWY0-981 (taurine degradation IV)106760.5130
PWY-4041 (γ-glutamyl cycle)2791330.5106
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911070.5078
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81640.5046
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901350.5045
GLUCARDEG-PWY (D-glucarate degradation I)152930.5029
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911350.5027
GLUCONSUPER-PWY (D-gluconate degradation)2291180.5015
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961360.5008
PWY-5386 (methylglyoxal degradation I)3051380.4994
PWY0-1182 (trehalose degradation II (trehalase))70580.4966
TYRFUMCAT-PWY (tyrosine degradation I)1841030.4938
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491220.4881
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491220.4881
LIPASYN-PWY (phospholipases)2121110.4865
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481450.4788
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001340.4783
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96680.4748
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391420.4707
PWY-5913 (TCA cycle variation IV)3011320.4613
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135810.4510
PWY-6196 (serine racemization)102670.4386
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156870.4380
PWY-6134 (tyrosine biosynthesis IV)89610.4321
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121040.4307
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183950.4301
PWY-561 (superpathway of glyoxylate cycle)162880.4290
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651420.4288
GALACTARDEG-PWY (D-galactarate degradation I)151840.4267
GLYOXYLATE-BYPASS (glyoxylate cycle)169900.4262
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135780.4234
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91610.4231
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138790.4228
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94620.4206
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291330.4193
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112690.4191
PWY-6087 (4-chlorocatechol degradation)2231050.4131
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))191950.4094
PWY0-1299 (arginine dependent acid resistance)199970.4058
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301060.4052
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981450.4021
THREONINE-DEG2-PWY (threonine degradation II)2141010.4021



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7663   G7662   EG12147   EG12146   EG11682   EG11681   EG11680   EG10898   EG10610   
G76650.9997630.9997230.9995040.9996230.99970.9996740.9998980.9997750.998524
G76630.9998450.9993860.999560.9995660.9996190.9997280.9996410.998588
G76620.9993080.999460.9995440.9995690.9996930.9995310.998664
EG121470.9997440.999550.9994930.9995010.9995230.998808
EG121460.9997350.9997250.9996440.9997390.998843
EG116820.999770.9998650.9998010.998819
EG116810.9997350.9998350.998712
EG116800.9999520.998704
EG108980.99873
EG10610



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PAIRWISE BLAST SCORES:

  G7665   G7663   G7662   EG12147   EG12146   EG11682   EG11681   EG11680   EG10898   EG10610   
G76650.0f0---------
G7663-0.0f0--------
G7662--0.0f0-------
EG12147---0.0f0------
EG12146----0.0f0-----
EG11682-----0.0f0----
EG11681------0.0f0---
EG11680-------0.0f0--
EG10898--------0.0f0-
EG10610---------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis) (degree of match pw to cand: 0.125, degree of match cand to pw: 0.200, average score: 0.609)
  Genes in pathway or complex:
             0.8483 0.7608 EG10520 (waaA) KDOTRANS-MONOMER (KDO transferase)
             0.0466 0.0003 EG10545 (lpxA) UDPNACETYLGLUCOSAMACYLTRANS-MONOMER (LpxA)
             0.9478 0.8872 EG10265 (lpxC) UDPACYLGLCNACDEACETYL-MONOMER (UDP-3-O-acyl-N-acetylglucosamine deacetylase)
             0.1015 0.0003 EG10316 (lpxD) UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-MONO (UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase)
             0.0654 0.0034 EG12666 (lpxH) EG12666-MONOMER (UDP-2,3-diacylglucosamine hydrolase)
             0.2333 0.0415 EG11409 (lpxK) TETRAACYLDISACC4KIN-MONOMER (tetraacyldisaccharide 4'-kinase)
             0.0537 0.0003 EG10546 (lpxB) LIPIDADISACCHARIDESYNTH-MONOMER (LpxB)
             0.7920 0.6885 EG10464 (lpxL) LAUROYLACYLTRAN-MONOMER (lauroyl acyltransferase)
             0.9287 0.8955 G7241 (lpxP) PALMITOTRANS-MONOMER (palmitoleoyl acyltransferase)
             0.5433 0.2885 EG10614 (lpxM) MYRISTOYLACYLTRAN-MONOMER (myristoyl-acyl carrier protein (ACP)-dependent acyltransferase)
             0.9994 0.9981 EG10973 (gutQ) EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
   *in cand* 0.9995 0.9987 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
             0.6305 0.0520 EG10518 (kdsA) KDO-8PSYNTH-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate synthase)
   *in cand* 0.9996 0.9986 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
             0.6852 0.0332 EG10519 (kdsB) CPM-KDOSYNTH-MONOMER (3-deoxy-D-manno-octulosonate cytidylyltransferase)
             0.0061 0.0003 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9988 0.9985 EG10610 (mreD) EG10610-MONOMER (MreD)
   *in cand* 0.9997 0.9987 EG10898 (rpoN) RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
   *in cand* 0.9997 0.9987 EG11680 (lptB) YHBG-MONOMER (LptB)
   *in cand* 0.9996 0.9987 EG11681 (hpf) EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)
   *in cand* 0.9996 0.9988 EG11682 (ptsN) EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)
   *in cand* 0.9996 0.9988 EG12146 (yhbJ) EG12146-MONOMER (predicted P-loop containing ATPase)
   *in cand* 0.9995 0.9988 EG12147 (npr) EG12147-MONOMER (phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr)
   *in cand* 0.9996 0.9985 G7665 (lptA) YHBN-MONOMER (LptA)

- ABC-53-CPLX (LptABCFG ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.200, average score: 0.907)
  Genes in pathway or complex:
             0.9991 0.9969 G7664 (lptC) G7664-MONOMER (LptC)
   *in cand* 0.9997 0.9987 EG11680 (lptB) YHBG-MONOMER (LptB)
   *in cand* 0.9996 0.9985 G7665 (lptA) YHBN-MONOMER (LptA)
             0.6874 0.4725 G7888 (lptF) G7888-MONOMER (LptF)
             0.7726 0.4104 G7889 (lptG) G7889-MONOMER (LptG)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9988 0.9985 EG10610 (mreD) EG10610-MONOMER (MreD)
   *in cand* 0.9997 0.9987 EG10898 (rpoN) RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
   *in cand* 0.9996 0.9987 EG11681 (hpf) EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)
   *in cand* 0.9996 0.9988 EG11682 (ptsN) EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)
   *in cand* 0.9996 0.9988 EG12146 (yhbJ) EG12146-MONOMER (predicted P-loop containing ATPase)
   *in cand* 0.9995 0.9988 EG12147 (npr) EG12147-MONOMER (phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr)
   *in cand* 0.9995 0.9987 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
   *in cand* 0.9996 0.9986 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)

- LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis) (degree of match pw to cand: 0.080, degree of match cand to pw: 0.200, average score: 0.607)
  Genes in pathway or complex:
             0.0466 0.0003 EG10545 (lpxA) UDPNACETYLGLUCOSAMACYLTRANS-MONOMER (LpxA)
             0.9478 0.8872 EG10265 (lpxC) UDPACYLGLCNACDEACETYL-MONOMER (UDP-3-O-acyl-N-acetylglucosamine deacetylase)
             0.1015 0.0003 EG10316 (lpxD) UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-MONO (UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase)
             0.0654 0.0034 EG12666 (lpxH) EG12666-MONOMER (UDP-2,3-diacylglucosamine hydrolase)
             0.2333 0.0415 EG11409 (lpxK) TETRAACYLDISACC4KIN-MONOMER (tetraacyldisaccharide 4'-kinase)
             0.0537 0.0003 EG10546 (lpxB) LIPIDADISACCHARIDESYNTH-MONOMER (LpxB)
             0.9994 0.9981 EG10973 (gutQ) EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
   *in cand* 0.9995 0.9987 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
             0.6305 0.0520 EG10518 (kdsA) KDO-8PSYNTH-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate synthase)
   *in cand* 0.9996 0.9986 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
             0.6852 0.0332 EG10519 (kdsB) CPM-KDOSYNTH-MONOMER (3-deoxy-D-manno-octulosonate cytidylyltransferase)
             0.8483 0.7608 EG10520 (waaA) KDOTRANS-MONOMER (KDO transferase)
             0.5433 0.2885 EG10614 (lpxM) MYRISTOYLACYLTRAN-MONOMER (myristoyl-acyl carrier protein (ACP)-dependent acyltransferase)
             0.7920 0.6885 EG10464 (lpxL) LAUROYLACYLTRAN-MONOMER (lauroyl acyltransferase)
             0.7393 0.5386 EG11423 (waaK) EG11423-MONOMER (lipopolysaccharide core biosynthesis; heptosyl transferase IV; probably hexose transferase)
             0.8078 0.5749 EG11353 (waaJ) EG11353-MONOMER (UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase)
             0.8110 0.6211 EG11352 (waaI) EG11352-MONOMER (UDP-D-glucose:(glucosyl)LPS α-1,3-glucosyltransferase)
             0.5936 0.3179 EG11351 (waaB) EG11351-MONOMER (UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase)
             0.8267 0.7695 EG11425 (waaY) EG11425-MONOMER (lipopolysaccharide core heptose (II) kinase)
             0.8033 0.7201 EG11341 (waaQ) EG11341-MONOMER (lipopolysaccharide core heptosyl transferase III)
             0.8210 0.7785 EG11340 (waaP) EG11340-MONOMER (lipopolysaccharide core heptose (I) kinase)
             0.6913 0.3633 EG11339 (waaG) EG11339-MONOMER (lipopolysaccharide glucosyltransferase I)
             0.8610 0.6957 EG12210 (waaF) EG12210-MONOMER (ADP-heptose:LPS heptosyltransferase II)
             0.7657 0.5875 EG11189 (waaC) EG11189-MONOMER (ADP-heptose:LPS heptosyl transferase I)
             0.0061 0.0003 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9988 0.9985 EG10610 (mreD) EG10610-MONOMER (MreD)
   *in cand* 0.9997 0.9987 EG10898 (rpoN) RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
   *in cand* 0.9997 0.9987 EG11680 (lptB) YHBG-MONOMER (LptB)
   *in cand* 0.9996 0.9987 EG11681 (hpf) EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)
   *in cand* 0.9996 0.9988 EG11682 (ptsN) EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)
   *in cand* 0.9996 0.9988 EG12146 (yhbJ) EG12146-MONOMER (predicted P-loop containing ATPase)
   *in cand* 0.9995 0.9988 EG12147 (npr) EG12147-MONOMER (phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr)
   *in cand* 0.9996 0.9985 G7665 (lptA) YHBN-MONOMER (LptA)

- PWY-1269 (CMP-KDO biosynthesis I) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.200, average score: 0.969)
  Genes in pathway or complex:
             0.6852 0.0332 EG10519 (kdsB) CPM-KDOSYNTH-MONOMER (3-deoxy-D-manno-octulosonate cytidylyltransferase)
   *in cand* 0.9996 0.9986 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
             0.6305 0.0520 EG10518 (kdsA) KDO-8PSYNTH-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate synthase)
   *in cand* 0.9995 0.9987 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
             0.9994 0.9981 EG10973 (gutQ) EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9988 0.9985 EG10610 (mreD) EG10610-MONOMER (MreD)
   *in cand* 0.9997 0.9987 EG10898 (rpoN) RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
   *in cand* 0.9997 0.9987 EG11680 (lptB) YHBG-MONOMER (LptB)
   *in cand* 0.9996 0.9987 EG11681 (hpf) EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)
   *in cand* 0.9996 0.9988 EG11682 (ptsN) EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)
   *in cand* 0.9996 0.9988 EG12146 (yhbJ) EG12146-MONOMER (predicted P-loop containing ATPase)
   *in cand* 0.9995 0.9988 EG12147 (npr) EG12147-MONOMER (phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr)
   *in cand* 0.9996 0.9985 G7665 (lptA) YHBN-MONOMER (LptA)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10898 EG11680 EG11681 EG11682 EG12146 EG12147 G7662 G7663 G7665 (centered at EG10898)
EG10610 (centered at EG10610)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7665   G7663   G7662   EG12147   EG12146   EG11682   EG11681   EG11680   EG10898   EG10610   
191/623249/623332/623309/623381/623344/623346/623388/623340/623163/623
AAEO224324:0:Tyes12411239794----0132-
AAUR290340:2:Tyes---01865--354--
AAVE397945:0:Tyes644355435603194413441356566-
ABAC204669:0:Tyes-27290-2742--604605-
ABAU360910:0:Tyes-172417230176717651763172719611783
ABOR393595:0:Tyes2224251617181921200
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CSP501479:1:Fyes-0--------
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HMAR272569:7:Tyes---1-0----
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