CANDIDATE ID: 123

CANDIDATE ID: 123

NUMBER OF GENES: 10
AVERAGE SCORE:    9.9931673e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7842 (orn) (b4162)
   Products of gene:
     - G7842-MONOMER (oligoribonuclease monomer)
     - CPLX0-1821 (oligoribonuclease)
       Reactions:
        EC# 3.1.13.3

- G7841 (rsgA) (b4161)
   Products of gene:
     - G7841-MONOMER (ribosome small subunit-dependent GTPase A)
       Reactions:
        GTP + H2O  ->  GDP + phosphate + H+

- EG11757 (yjeE) (b4168)
   Products of gene:
     - EG11757-MONOMER (essential protein with weak ATPase activity)
     - CPLX0-7798 (essential protein with weak ATPase activity)

- EG11363 (amiB) (b4169)
   Products of gene:
     - NACMURLALAAMI2-MONOMER (N-acetylmuramoyl-L-alanine amidase 2)
       Reactions:
        a peptidoglycan + H2O  =  N-acetylmuramate + a peptide

- EG11281 (mutL) (b4170)
   Products of gene:
     - EG11281-MONOMER (MutL)
     - MUTHLS-CPLX (MutHLS complex, methyl-directed mismatch repair)
       Reactions:
        a mismatched DNA base pair  =  a properly matched DNA base pair

- EG10595 (miaA) (b4171)
   Products of gene:
     - EG10595-MONOMER (tRNA(i6A37) synthase)
       Reactions:
        a tRNA + dimethylallyl diphosphate  =  a tRNA containing N6-dimethylallyladenosine + diphosphate
         In pathways
         PWY-2781 (PWY-2781)

- EG10438 (hfq) (b4172)
   Products of gene:
     - EG10438-MONOMER (RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins)
     - CPLX0-1461 (HF-I, host factor for RNA phage Q β replication)

- EG10437 (hflX) (b4173)
   Products of gene:
     - EG10437-MONOMER (GTPase associated with the 50S subunit of the ribosome)
       Reactions:
        GTP + H2O  ->  GDP + phosphate + H+

- EG10436 (hflK) (b4174)
   Products of gene:
     - EG10436-MONOMER (regulator of FtsH protease)
     - CPLX0-1321 (HflK-HflC complex; regulator of FtsH protease)
     - CPLX0-2982 (HflB, integral membrane ATP-dependent zinc metallopeptidase)
       Reactions:
        EC# 3.4.24.-

- EG10435 (hflC) (b4175)
   Products of gene:
     - EG10435-MONOMER (regulator of FtsH protease)
     - CPLX0-1321 (HflK-HflC complex; regulator of FtsH protease)
     - CPLX0-2982 (HflB, integral membrane ATP-dependent zinc metallopeptidase)
       Reactions:
        EC# 3.4.24.-



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 176
Effective number of orgs (counting one per cluster within 468 clusters): 111

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175810
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295310
YPES386656 ncbi Yersinia pestis Pestoides F10
YPES377628 ncbi Yersinia pestis Nepal51610
YPES360102 ncbi Yersinia pestis Antiqua10
YPES349746 ncbi Yersinia pestis Angola10
YPES214092 ncbi Yersinia pestis CO9210
YPES187410 ncbi Yersinia pestis KIM 1010
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808110
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A9
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110189
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103319
XFAS405440 ncbi Xylella fastidiosa M129
XFAS183190 ncbi Xylella fastidiosa Temecula19
XFAS160492 ncbi Xylella fastidiosa 9a5c9
XCAM487884 Xanthomonas campestris pv. paulliniae9
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-109
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80049
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339139
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3069
VVUL216895 ncbi Vibrio vulnificus CMCP610
VVUL196600 ncbi Vibrio vulnificus YJ01610
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 221063310
VFIS312309 ncbi Vibrio fischeri ES11410
VEIS391735 ncbi Verminephrobacter eiseniae EF01-210
VCHO345073 ncbi Vibrio cholerae O39510
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696110
TTUR377629 ncbi Teredinibacter turnerae T790110
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252599
TCRU317025 ncbi Thiomicrospira crunogena XCL-210
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT210
SSP94122 ncbi Shewanella sp. ANA-310
SSON300269 ncbi Shigella sonnei Ss04610
SSED425104 ncbi Shewanella sediminis HAW-EB310
SPRO399741 ncbi Serratia proteamaculans 56810
SPEA398579 ncbi Shewanella pealeana ATCC 70034510
SONE211586 ncbi Shewanella oneidensis MR-110
SLOI323850 ncbi Shewanella loihica PV-410
SHIGELLA ncbi Shigella flexneri 2a str. 2457T10
SHAL458817 ncbi Shewanella halifaxensis HAW-EB410
SGLO343509 ncbi Sodalis glossinidius morsitans10
SFLE373384 ncbi Shigella flexneri 5 str. 840110
SFLE198214 ncbi Shigella flexneri 2a str. 30110
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47610
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915010
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1810
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty210
SDYS300267 ncbi Shigella dysenteriae Sd19710
SDEN318161 ncbi Shewanella denitrificans OS21710
SDEG203122 ncbi Saccharophagus degradans 2-4010
SBOY300268 ncbi Shigella boydii Sb22710
SBAL402882 ncbi Shewanella baltica OS18510
SBAL399599 ncbi Shewanella baltica OS19510
RSOL267608 ncbi Ralstonia solanacearum GMI100010
RPAL316055 ncbi Rhodopseudomonas palustris BisA539
RMET266264 ncbi Ralstonia metallidurans CH3410
RFER338969 ncbi Rhodoferax ferrireducens T11810
REUT381666 ncbi Ralstonia eutropha H1610
REUT264198 ncbi Ralstonia eutropha JMP13410
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC300010
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a10
PSTU379731 ncbi Pseudomonas stutzeri A150110
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-19
PSP296591 ncbi Polaromonas sp. JS66610
PPUT76869 ncbi Pseudomonas putida GB-110
PPUT351746 ncbi Pseudomonas putida F110
PPUT160488 ncbi Pseudomonas putida KT244010
PPRO298386 ncbi Photobacterium profundum SS910
PNAP365044 ncbi Polaromonas naphthalenivorans CJ210
PMUL272843 ncbi Pasteurella multocida multocida Pm7010
PMEN399739 ncbi Pseudomonas mendocina ymp10
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO110
PING357804 ncbi Psychromonas ingrahamii 3710
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC12510
PFLU220664 ncbi Pseudomonas fluorescens Pf-510
PFLU216595 ncbi Pseudomonas fluorescens SBW2510
PFLU205922 ncbi Pseudomonas fluorescens Pf0-110
PENT384676 ncbi Pseudomonas entomophila L4810
PCAR338963 ncbi Pelobacter carbinolicus DSM 23809
PATL342610 ncbi Pseudoalteromonas atlantica T6c10
PAER208964 ncbi Pseudomonas aeruginosa PAO110
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA1410
NOCE323261 ncbi Nitrosococcus oceani ATCC 197079
NMUL323848 ncbi Nitrosospira multiformis ATCC 2519610
NEUT335283 ncbi Nitrosomonas eutropha C9110
NEUR228410 ncbi Nitrosomonas europaea ATCC 1971810
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E10
MSP400668 ncbi Marinomonas sp. MWYL110
MPET420662 ncbi Methylibium petroleiphilum PM110
MFLA265072 ncbi Methylobacillus flagellatus KT10
MCAP243233 ncbi Methylococcus capsulatus Bath10
MAQU351348 ncbi Marinobacter aquaeolei VT810
LPNE400673 ncbi Legionella pneumophila Corby10
LPNE297246 ncbi Legionella pneumophila Paris10
LPNE297245 ncbi Legionella pneumophila Lens10
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 110
LCHO395495 ncbi Leptothrix cholodnii SP-69
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857810
JSP375286 ncbi Janthinobacterium sp. Marseille10
ILOI283942 ncbi Idiomarina loihiensis L2TR10
HSOM228400 ncbi Haemophilus somnus 233610
HSOM205914 ncbi Haemophilus somnus 129PT10
HINF71421 ncbi Haemophilus influenzae Rd KW209
HINF374930 ncbi Haemophilus influenzae PittEE9
HINF281310 ncbi Haemophilus influenzae 86-028NP9
HHAL349124 ncbi Halorhodospira halophila SL19
HDUC233412 ncbi Haemophilus ducreyi 35000HP10
HCHE349521 ncbi Hahella chejuensis KCTC 239610
HARS204773 ncbi Herminiimonas arsenicoxydans10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-009
FTUL418136 ncbi Francisella tularensis tularensis WY96-34189
FTUL401614 ncbi Francisella novicida U1129
FTUL393115 ncbi Francisella tularensis tularensis FSC1989
FTUL393011 ncbi Francisella tularensis holarctica OSU189
FTUL351581 Francisella tularensis holarctica FSC2009
FRANT ncbi Francisella tularensis tularensis SCHU S49
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250179
ESP42895 Enterobacter sp.10
EFER585054 ncbi Escherichia fergusonii ATCC 3546910
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H710
ECOL585397 ncbi Escherichia coli ED1a10
ECOL585057 ncbi Escherichia coli IAI3910
ECOL585056 ncbi Escherichia coli UMN02610
ECOL585055 ncbi Escherichia coli 5598910
ECOL585035 ncbi Escherichia coli S8810
ECOL585034 ncbi Escherichia coli IAI110
ECOL481805 ncbi Escherichia coli ATCC 873910
ECOL469008 ncbi Escherichia coli BL21(DE3)10
ECOL439855 ncbi Escherichia coli SMS-3-510
ECOL413997 ncbi Escherichia coli B str. REL60610
ECOL409438 ncbi Escherichia coli SE1110
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8910
ECOL362663 ncbi Escherichia coli 53610
ECOL331111 ncbi Escherichia coli E24377A10
ECOL316407 ncbi Escherichia coli K-12 substr. W311010
ECOL199310 ncbi Escherichia coli CFT07310
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104310
DNOD246195 ncbi Dichelobacter nodosus VCS1703A10
DARO159087 ncbi Dechloromonas aromatica RCB10
CVIO243365 ncbi Chromobacterium violaceum ATCC 1247210
CSP78 Caulobacter sp.9
CSAL290398 ncbi Chromohalobacter salexigens DSM 304310
CPSY167879 ncbi Colwellia psychrerythraea 34H10
CJAP155077 Cellvibrio japonicus10
BVIE269482 ncbi Burkholderia vietnamiensis G410
BTHA271848 ncbi Burkholderia thailandensis E26410
BSP36773 Burkholderia sp.10
BPSE320373 ncbi Burkholderia pseudomallei 66810
BPSE320372 ncbi Burkholderia pseudomallei 1710b10
BPSE272560 ncbi Burkholderia pseudomallei K9624310
BPET94624 Bordetella petrii10
BPER257313 ncbi Bordetella pertussis Tohama I10
BPAR257311 ncbi Bordetella parapertussis 1282210
BMAL320389 ncbi Burkholderia mallei NCTC 1024710
BMAL320388 ncbi Burkholderia mallei SAVP110
BMAL243160 ncbi Burkholderia mallei ATCC 2334410
BCEN331272 ncbi Burkholderia cenocepacia HI242410
BCEN331271 ncbi Burkholderia cenocepacia AU 10549
BBRO257310 ncbi Bordetella bronchiseptica RB5010
BAMB398577 ncbi Burkholderia ambifaria MC40-610
BAMB339670 ncbi Burkholderia ambifaria AMMD10
ASP76114 ncbi Aromatoleum aromaticum EbN110
ASP62928 ncbi Azoarcus sp. BH7210
ASP232721 ncbi Acidovorax sp. JS429
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44910
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL0310
APLE416269 ncbi Actinobacillus pleuropneumoniae L2010
AHYD196024 Aeromonas hydrophila dhakensis10
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232709
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-110
ABOR393595 ncbi Alcanivorax borkumensis SK210
ABAU360910 ncbi Bordetella avium 197N10
AAVE397945 ncbi Acidovorax citrulli AAC00-110


Names of the homologs of the genes in the group in each of these orgs
  G7842   G7841   EG11757   EG11363   EG11281   EG10595   EG10438   EG10437   EG10436   EG10435   
YPSE349747 YPSIP31758_3661YPSIP31758_3662YPSIP31758_3657YPSIP31758_3656YPSIP31758_3655YPSIP31758_3654YPSIP31758_3653YPSIP31758_3652YPSIP31758_3651YPSIP31758_3650
YPSE273123 YPTB0418YPTB0417YPTB0421YPTB0422YPTB0423YPTB0424YPTB0425YPTB0426YPTB0427YPTB0428
YPES386656 YPDSF_3608YPDSF_3609YPDSF_3605YPDSF_3604YPDSF_3603YPDSF_3602YPDSF_3601YPDSF_3600YPDSF_3599YPDSF_3598
YPES377628 YPN_3305YPN_3306YPN_3302YPN_3301YPN_3300YPN_3299YPN_3298YPN_3297YPN_3296YPN_3295
YPES360102 YPA_3918YPA_3919YPA_3915YPA_3914YPA_3913YPA_3912YPA_3911YPA_3910YPA_3909YPA_3908
YPES349746 YPANGOLA_A0708YPANGOLA_A0709YPANGOLA_A0703YPANGOLA_A0702YPANGOLA_A0701YPANGOLA_A0700YPANGOLA_A0699YPANGOLA_A0698YPANGOLA_A0697YPANGOLA_A0696
YPES214092 YPO0366YPO0365YPO0369YPO0370YPO0371YPO0372YPO0373YPO0374YPO0375YPO0376
YPES187410 Y0623Y0622Y0626Y0627Y0628Y0629Y0630Y0632Y0633Y0634
YENT393305 YE0369YE0368YE0373YE0374YE0375YE0376YE0377YE0378YE0379YE0380
XORY360094 XOOORF_2465XOOORF_1978XOOORF_1979XOOORF_1980XOOORF_1720XOOORF_1721XOOORF_1722XOOORF_4490XOOORF_4489
XORY342109 XOO2077XOO2579XOO2578XOO2577XOO2799XOO2798XOO2797XOO0837XOO0838
XORY291331 XOO2209XOO2734XOO2733XOO2732XOO2947XOO2946XOO2945XOO0912XOO0913
XFAS405440 XFASM12_0591XFASM12_2083XFASM12_2082XFASM12_2081XFASM12_0071XFASM12_0070XFASM12_0069XFASM12_1787XFASM12_1786
XFAS183190 PD_0522PD_1899PD_1898PD_1897PD_0067PD_0066PD_0065PD_1630PD_1629
XFAS160492 XF1257XF0758XF0759XF0760XF0090XF0089XF0088XF0452XF0453
XCAM487884 XCC-B100_2013XCC-B100_1878XCC-B100_1879XCC-B100_1880XCC-B100_2544XCC-B100_2543XCC-B100_2542XCC-B100_3294XCC-B100_3293
XCAM316273 XCAORF_2437XCAORF_2572XCAORF_2571XCAORF_2570XCAORF_1951XCAORF_1952XCAORF_1953XCAORF_1254XCAORF_1255
XCAM314565 XC_1950XC_1815XC_1816XC_1817XC_2516XC_2515XC_2514XC_3196XC_3195
XCAM190485 XCC2168XCC2300XCC2299XCC2298XCC1715XCC1716XCC1717XCC1050XCC1051
XAXO190486 XAC2039XAC2407XAC2406XAC2405XAC1734XAC1735XAC1736XAC1155XAC1156
VVUL216895 VV1_1286VV1_1285VV1_1290VV1_1291VV1_1292VV1_1293VV1_1294VV1_1295VV1_1296VV1_1297
VVUL196600 VV3078VV3077VV3075VV3074VV3073VV3072VV3071VV3070VV3069VV3068
VPAR223926 VP2823VP2824VP2821VP2820VP2819VP2818VP2817VP2816VP2815VP2814
VFIS312309 VF2329VF2330VF2327VF2326VF2325VF2324VF2323VF2322VF2321VF2320
VEIS391735 VEIS_0324VEIS_0321VEIS_1712VEIS_1711VEIS_4225VEIS_4227VEIS_0075VEIS_0074VEIS_0073VEIS_0072
VCHO345073 VC0395_A2743VC0395_A2742VC0395_A2754VC0395_A2755VC0395_A2756VC0395_A2757VC0395_A2758VC0395_A2759VC0395_A2760VC0395_A2761
VCHO VC0341VC0340VC0343VC0344VC0345VC0346VC0347VC0348VC0349VC0350
TTUR377629 TERTU_3568TERTU_3569TERTU_3562TERTU_3561TERTU_3560TERTU_3559TERTU_3558TERTU_3557TERTU_3556TERTU_3554
TDEN292415 TBD_1839TBD_1842TBD_1519TBD_1517TBD_1512TBD_1533TBD_0602TBD_0603TBD_0604
TCRU317025 TCR_0633TCR_0630TCR_1082TCR_1083TCR_1084TCR_1085TCR_1086TCR_1087TCR_1090TCR_1091
STYP99287 STM4350STM4349STM4357STM4358STM4359STM4360STM4361STM4362STM4363STM4364
SSP94122 SHEWANA3_0590SHEWANA3_0589SHEWANA3_0593SHEWANA3_0594SHEWANA3_0595SHEWANA3_0596SHEWANA3_0597SHEWANA3_0598SHEWANA3_0599SHEWANA3_0600
SSON300269 SSO_4347SSO_4346SSO_4353SSO_4354SSO_4355SSO_4356SSO_4357SSO_4358SSO_4359SSO_4360
SSED425104 SSED_0790SSED_0789SSED_0793SSED_0794SSED_0795SSED_0796SSED_0797SSED_0798SSED_0799SSED_0800
SPRO399741 SPRO_0424SPRO_0423SPRO_0427SPRO_0428SPRO_0429SPRO_0430SPRO_0431SPRO_0432SPRO_0433SPRO_0434
SPEA398579 SPEA_3547SPEA_3548SPEA_3544SPEA_3543SPEA_3542SPEA_3541SPEA_3540SPEA_3539SPEA_3538SPEA_3537
SONE211586 SO_0592SO_0591SO_0599SO_0600SO_0601SO_0602SO_0603SO_0604SO_0605SO_0606
SLOI323850 SHEW_0559SHEW_0558SHEW_0562SHEW_0563SHEW_0564SHEW_0565SHEW_0566SHEW_0567SHEW_0568SHEW_0569
SHIGELLA YJERYJEQYJEEAMIBMUTLMIAAHFQHFLXHFLKHFLC
SHAL458817 SHAL_3641SHAL_3642SHAL_3638SHAL_3637SHAL_3636SHAL_3635SHAL_3634SHAL_3633SHAL_3632SHAL_3631
SGLO343509 SG0314SG0313SG0333SG0334SG0335SG0336SG0337SG0338SG0339SG0340
SFLE373384 SFV_4319SFV_4318SFV_4326SFV_4327SFV_4328SFV_4329SFV_4330SFV_4331SFV_4332SFV_4333
SFLE198214 AAN45737.1AAN45736.1AAN45740.1AAN45741.1AAN45742.1AAN45743.1AAN45744.1AAN45745.1AAN45746.1AAN45747.1
SENT454169 SEHA_C4768SEHA_C4767SEHA_C4775SEHA_C4776SEHA_C4777SEHA_C4778SEHA_C4779SEHA_C4780SEHA_C4781SEHA_C4782
SENT321314 SCH_4229SCH_4228SCH_4233SCH_4234SCH_4235SCH_4236SCH_4237SCH_4238SCH_4239SCH_4240
SENT295319 SPA4167SPA4166SPA4174SPA4175SPA4176SPA4177SPA4178SPA4179SPA4180SPA4181
SENT220341 STY4710STY4709STY4714STY4715STY4716STY4717STY4718STY4719STY4720STY4721
SENT209261 T4402T4401T4408T4409T4410T4411T4412T4413T4414T4415
SDYS300267 SDY_4430SDY_4431SDY_4421SDY_4420SDY_4419SDY_4418SDY_4417SDY_4416SDY_4415SDY_4414
SDEN318161 SDEN_3212SDEN_3213SDEN_3209SDEN_3208SDEN_3207SDEN_3206SDEN_3205SDEN_3204SDEN_3203SDEN_3202
SDEG203122 SDE_2676SDE_2677SDE_2671SDE_2670SDE_2669SDE_2668SDE_2667SDE_2666SDE_2665SDE_2664
SBOY300268 SBO_4295SBO_4296SBO_4288SBO_4287SBO_4286SBO_4285SBO_4284SBO_4283SBO_4282SBO_4281
SBAL402882 SHEW185_3774SHEW185_3775SHEW185_3771SHEW185_3770SHEW185_3769SHEW185_3768SHEW185_3767SHEW185_3766SHEW185_3765SHEW185_3764
SBAL399599 SBAL195_3900SBAL195_3901SBAL195_3897SBAL195_3896SBAL195_3895SBAL195_3894SBAL195_3893SBAL195_3892SBAL195_3891SBAL195_3890
RSOL267608 RSC0942RSC0940RSC2540RSC2539RSC2563RSC2564RSC1220RSC1221RSC1222RSC1223
RPAL316055 RPE_4500RPE_0464RPE_2978RPE_1420RPE_2186RPE_2762RPE_2763RPE_2178RPE_2179
RMET266264 RMET_2574RMET_2576RMET_0525RMET_0526RMET_2908RMET_2909RMET_2101RMET_2100RMET_2099RMET_2098
RFER338969 RFER_1412RFER_1409RFER_3302RFER_3303RFER_3308RFER_1535RFER_2302RFER_2301RFER_2300RFER_2299
REUT381666 H16_A2709H16_A2711H16_A0596H16_A0597H16_A3069H16_A3070H16_A2359H16_A2358H16_A2357H16_A2356
REUT264198 REUT_A0907REUT_A0905REUT_A0583REUT_A0584REUT_A2769REUT_A2770REUT_A2081REUT_A2080REUT_A2079REUT_A2078
PSYR223283 PSPTO_4950PSPTO_4951PSPTO_4946PSPTO_4945PSPTO_4944PSPTO_4943PSPTO_4942PSPTO_4941PSPTO_4940PSPTO_4939
PSYR205918 PSYR_0564PSYR_0563PSYR_0568PSYR_0569PSYR_0570PSYR_0571PSYR_0572PSYR_0573PSYR_0574PSYR_0575
PSTU379731 PST_3793PST_3795PST_3672PST_3671PST_3670PST_3669PST_3668PST_3667PST_3666PST_3665
PSP312153 PNUC_0525PNUC_0523PNUC_0596PNUC_0595PNUC_1760PNUC_1286PNUC_1285PNUC_1284PNUC_1283
PSP296591 BPRO_1700BPRO_1697BPRO_3198BPRO_3199BPRO_3209BPRO_3212BPRO_2603BPRO_2602BPRO_2601BPRO_2600
PPUT76869 PPUTGB1_4954PPUTGB1_4955PPUTGB1_4950PPUTGB1_4949PPUTGB1_4948PPUTGB1_4947PPUTGB1_4946PPUTGB1_4945PPUTGB1_4944PPUTGB1_4943
PPUT351746 PPUT_4778PPUT_4779PPUT_4774PPUT_4773PPUT_4772PPUT_4771PPUT_4770PPUT_4769PPUT_4768PPUT_4767
PPUT160488 PP_4902PP_4903PP_4898PP_4897PP_4896PP_4895PP_4894PP_4893PP_4892PP_4891
PPRO298386 PBPRA3370PBPRA3371PBPRA3354PBPRA3353PBPRA3352PBPRA3351PBPRA3350PBPRA3349PBPRA3348PBPRA3347
PNAP365044 PNAP_1470PNAP_1467PNAP_1171PNAP_1170PNAP_1157PNAP_1155PNAP_1877PNAP_1878PNAP_1879PNAP_1880
PMUL272843 PM0900PM0899PM0902PM0903PM0904PM0905PM0906PM0907PM0117PM0118
PMEN399739 PMEN_0628PMEN_0626PMEN_0631PMEN_0632PMEN_0633PMEN_0634PMEN_0635PMEN_0636PMEN_0637PMEN_0638
PLUM243265 PLU4595PLU4596PLU4585PLU4584PLU4583PLU4582PLU4581PLU4580PLU4579PLU4578
PING357804 PING_3335PING_3336PING_3242PING_3241PING_3240PING_3239PING_3238PING_3237PING_3236PING_3235
PHAL326442 PSHAA0488PSHAA0487PSHAA0267PSHAA0268PSHAA0269PSHAA0270PSHAA0271PSHAA0272PSHAA0273PSHAA0274
PFLU220664 PFL_0558PFL_0557PFL_0562PFL_0563PFL_0564PFL_0565PFL_0566PFL_0567PFL_0568PFL_0569
PFLU216595 PFLU0512PFLU0511PFLU0516PFLU0517PFLU0518PFLU0519PFLU0520PFLU0521PFLU0522PFLU0523
PFLU205922 PFL_0515PFL_0514PFL_0519PFL_0520PFL_0521PFL_0522PFL_0523PFL_0524PFL_0525PFL_0526
PENT384676 PSEEN4954PSEEN4955PSEEN4947PSEEN4946PSEEN4945PSEEN4944PSEEN4943PSEEN4942PSEEN4941PSEEN4940
PCAR338963 PCAR_2903PCAR_1005PCAR_1511PCAR_1304PCAR_1305PCAR_1306PCAR_2043PCAR_2262PCAR_2263
PATL342610 PATL_3481PATL_3482PATL_3974PATL_3975PATL_3976PATL_3977PATL_3978PATL_3979PATL_3980PATL_3981
PAER208964 PA4951PA4952PA4948PA4947PA4946PA4945PA4944PA4943PA4942PA4941
PAER208963 PA14_65410PA14_65420PA14_65380PA14_65370PA14_65350PA14_65320PA14_65310PA14_65300PA14_65280PA14_65270
NOCE323261 NOC_0341NOC_0338NOC_0337NOC_0336NOC_2591NOC_2590NOC_2589NOC_2588NOC_2587
NMUL323848 NMUL_A0714NMUL_A0711NMUL_A2531NMUL_A2532NMUL_A1144NMUL_A0092NMUL_A0447NMUL_A0446NMUL_A0445NMUL_A0444
NEUT335283 NEUT_2290NEUT_2287NEUT_1895NEUT_1896NEUT_1828NEUT_0386NEUT_0961NEUT_0962NEUT_0963NEUT_0964
NEUR228410 NE0075NE0078NE0657NE0656NE1742NE1976NE1287NE1286NE1285NE1284
MSUC221988 MS1512MS1511MS1514MS1515MS1516MS1517MS1518MS1519MS1619MS1620
MSP400668 MMWYL1_2638MMWYL1_2639MMWYL1_2636MMWYL1_2635MMWYL1_2634MMWYL1_2633MMWYL1_2632MMWYL1_2631MMWYL1_2630MMWYL1_2629
MPET420662 MPE_A2911MPE_A2914MPE_A2026MPE_A2027MPE_A2031MPE_A2034MPE_A1991MPE_A1990MPE_A1989MPE_A1988
MFLA265072 MFLA_1473MFLA_1475MFLA_1380MFLA_1381MFLA_1384MFLA_1385MFLA_1589MFLA_1588MFLA_1587MFLA_1586
MCAP243233 MCA_0539MCA_0537MCA_1300MCA_1296MCA_1692MCA_1691MCA_1983MCA_1982MCA_1981MCA_1980
MAQU351348 MAQU_2776MAQU_2777MAQU_2773MAQU_2772MAQU_2771MAQU_2770MAQU_2769MAQU_2768MAQU_2767MAQU_2766
LPNE400673 LPC_0389LPC_0387LPC_0436LPC_0437LPC_0438LPC_0439LPC_0010LPC_0011LPC_2860LPC_2859
LPNE297246 LPP2797LPP2799LPP2754LPP2753LPP2752LPP2751LPP0009LPP0010LPP0548LPP0549
LPNE297245 LPL2666LPL2668LPL2627LPL2626LPL2625LPL2624LPL0009LPL0010LPL0524LPL0525
LPNE272624 LPG2741LPG2743LPG2699LPG2698LPG2697LPG2696LPG0009LPG0010LPG0484LPG0485
LCHO395495 LCHO_0985LCHO_1130LCHO_1129LCHO_1125LCHO_1285LCHO_2863LCHO_2862LCHO_2861LCHO_2860
KPNE272620 GKPORF_B3917GKPORF_B3916GKPORF_B3924GKPORF_B3925GKPORF_B3926GKPORF_B3927GKPORF_B3928GKPORF_B3929GKPORF_B3930GKPORF_B3931
JSP375286 MMA_0852MMA_0849MMA_0465MMA_0464MMA_0462MMA_0461MMA_2122MMA_2121MMA_2120MMA_2119
ILOI283942 IL2300IL2301IL0329IL0330IL0331IL0332IL0333IL0334IL0335IL0336
HSOM228400 HSM_1007HSM_1008HSM_1566HSM_1567HSM_1568HSM_1569HSM_1074HSM_1075HSM_1785HSM_1784
HSOM205914 HS_1100HS_1099HS_1081HS_1082HS_1083HS_1084HS_1105HS_1104HS_0487HS_0488
HINF71421 HI_1715HI_1714HI_0065HI_0066HI_0067HI_0068HI_0411HI_0151HI_0150
HINF374930 CGSHIEE_03455CGSHIEE_03460CGSHIEE_02970CGSHIEE_02965CGSHIEE_02960CGSHIEE_02955CGSHIEE_00940CGSHIEE_02530CGSHIEE_02535
HINF281310 NTHI2024NTHI2023NTHI0078NTHI0079NTHI0080NTHI0081NTHI0535NTHI0239NTHI0237
HHAL349124 HHAL_0225HHAL_0670HHAL_0669HHAL_0668HHAL_0667HHAL_0666HHAL_0665HHAL_0664HHAL_0663
HDUC233412 HD_0452HD_1027HD_0451HD_0450HD_0743HD_0742HD_0741HD_0740HD_1809HD_1808
HCHE349521 HCH_05390HCH_05392HCH_05388HCH_05387HCH_05385HCH_05384HCH_05383HCH_05382HCH_05381HCH_05380
HARS204773 HEAR0876HEAR0873HEAR0409HEAR0408HEAR0406HEAR0405HEAR1269HEAR1271HEAR1272HEAR1273
FTUL458234 FTA_0197FTA_1665FTA_1382FTA_1661FTA_0948FTA_0949FTA_0950FTA_0954FTA_0955
FTUL418136 FTW_1861FTW_1587FTW_1704FTW_1584FTW_1100FTW_1099FTW_1098FTW_1096FTW_1095
FTUL401614 FTN_0068FTN_0574FTN_0274FTN_0577FTN_1052FTN_1051FTN_1050FTN_1048FTN_1047
FTUL393115 FTF0228CFTF0483CFTF0370CFTF0486FTF0629FTF0630FTF0631FTF0633FTF0634
FTUL393011 FTH_0177FTH_1526FTH_1279FTH_1523FTH_0882FTH_0883FTH_0884FTH_0886FTH_0887
FTUL351581 FTL_0183FTL_1580FTL_1307FTL_1576FTL_0897FTL_0898FTL_0899FTL_0903FTL_0904
FRANT ORNFT.0483CYJEEMUTLMIAAHFQHFLXHFLKHFLC
FPHI484022 FPHI_0765FPHI_0264FPHI_0546FPHI_0261FPHI_1537FPHI_1538FPHI_1539FPHI_1542FPHI_1543
ESP42895 ENT638_0348ENT638_0347ENT638_0351ENT638_0352ENT638_0353ENT638_0354ENT638_0355ENT638_0356ENT638_0357ENT638_0358
EFER585054 EFER_4216EFER_4215EFER_4221EFER_4222EFER_4223EFER_4224EFER_4225EFER_4226EFER_4227EFER_4228
ECOO157 YJERYJEQYJEEAMIBMUTLMIAAHFQHFLXHFLKHFLC
ECOL83334 ECS5141ECS5140ECS5144ECS5145ECS5146ECS5147ECS5148ECS5149ECS5150ECS5151
ECOL585397 ECED1_4949ECED1_4948ECED1_4953ECED1_4954ECED1_4955ECED1_4956ECED1_4957ECED1_4958ECED1_4959ECED1_4960
ECOL585057 ECIAI39_4627ECIAI39_4626ECIAI39_4632ECIAI39_4633ECIAI39_4634ECIAI39_4636ECIAI39_4637ECIAI39_4638ECIAI39_4639ECIAI39_4640
ECOL585056 ECUMN_4696ECUMN_4695ECUMN_4701ECUMN_4702ECUMN_4703ECUMN_4704ECUMN_4705ECUMN_4706ECUMN_4707ECUMN_4708
ECOL585055 EC55989_4719EC55989_4718EC55989_4723EC55989_4724EC55989_4725EC55989_4726EC55989_4727EC55989_4728EC55989_4729EC55989_4730
ECOL585035 ECS88_4750ECS88_4749ECS88_4754ECS88_4755ECS88_4756ECS88_4757ECS88_4758ECS88_4759ECS88_4760ECS88_4761
ECOL585034 ECIAI1_4397ECIAI1_4396ECIAI1_4401ECIAI1_4402ECIAI1_4403ECIAI1_4404ECIAI1_4405ECIAI1_4406ECIAI1_4407ECIAI1_4408
ECOL481805 ECOLC_3848ECOLC_3849ECOLC_3845ECOLC_3844ECOLC_3843ECOLC_3842ECOLC_3841ECOLC_3840ECOLC_3839ECOLC_3838
ECOL469008 ECBD_3869ECBD_3870ECBD_3866ECBD_3865ECBD_3864ECBD_3863ECBD_3862ECBD_3861ECBD_3860ECBD_3859
ECOL439855 ECSMS35_4633ECSMS35_4632ECSMS35_4639ECSMS35_4640ECSMS35_4641ECSMS35_4642ECSMS35_4643ECSMS35_4644ECSMS35_4645ECSMS35_4646
ECOL413997 ECB_04032ECB_04031ECB_04035ECB_04036ECB_04037ECB_04038ECB_04039ECB_04040ECB_04041ECB_04042
ECOL409438 ECSE_4462ECSE_4461ECSE_4465ECSE_4466ECSE_4467ECSE_4468ECSE_4469ECSE_4470ECSE_4471ECSE_4472
ECOL405955 APECO1_2227APECO1_2228APECO1_2223APECO1_2222APECO1_2221APECO1_2220APECO1_2219APECO1_2218APECO1_2217APECO1_2216
ECOL364106 UTI89_C4762UTI89_C4761UTI89_C4768UTI89_C4769UTI89_C4770UTI89_C4771UTI89_C4772UTI89_C4773UTI89_C4774UTI89_C4775
ECOL362663 ECP_4406ECP_4405ECP_4413ECP_4414ECP_4415ECP_4416ECP_4417ECP_4418ECP_4419ECP_4420
ECOL331111 ECE24377A_4719ECE24377A_4718ECE24377A_4725ECE24377A_4727ECE24377A_4728ECE24377A_4729ECE24377A_4730ECE24377A_4731ECE24377A_4732ECE24377A_4733
ECOL316407 ECK4158:JW5740:B4162ECK4157:JW4122:B4161ECK4164:JW4126:B4168ECK4165:JW4127:B4169ECK4166:JW4128:B4170ECK4167:JW4129:B4171ECK4168:JW4130:B4172ECK4169:JW4131:B4173ECK4170:JW4132:B4174ECK4171:JW4133:B4175
ECOL199310 C5249C5248C5252C5253C5254C5255C5256C5257C5258C5259
ECAR218491 ECA3964ECA3965ECA3938ECA3937ECA3936ECA3935ECA3934ECA3933ECA3932ECA3931
DNOD246195 DNO_0904DNO_0649DNO_0149DNO_0311DNO_1116DNO_1117DNO_0595DNO_0596DNO_0597DNO_0598
DARO159087 DARO_3001DARO_3004DARO_3050DARO_3049DARO_3164DARO_3171DARO_2980DARO_2979DARO_2978DARO_2977
CVIO243365 CV_2368CV_2365CV_3821CV_3822CV_1342CV_3389CV_3533CV_3532CV_3531CV_3530
CSP78 CAUL_1373CAUL_4849CAUL_2573CAUL_4062CAUL_3349CAUL_2610CAUL_2611CAUL_3344CAUL_3345
CSAL290398 CSAL_1270CSAL_1269CSAL_1273CSAL_1274CSAL_1275CSAL_1276CSAL_1277CSAL_1278CSAL_1279CSAL_1280
CPSY167879 CPS_4379CPS_4380CPS_0321CPS_0322CPS_0323CPS_0324CPS_0325CPS_0326CPS_0327CPS_0328
CJAP155077 CJA_3117CJA_3118CJA_3086CJA_3082CJA_3081CJA_3080CJA_3079CJA_3078CJA_3077CJA_3076
BVIE269482 BCEP1808_0998BCEP1808_0996BCEP1808_2655BCEP1808_2656BCEP1808_0724BCEP1808_0723BCEP1808_1734BCEP1808_1733BCEP1808_1732BCEP1808_1731
BTHA271848 BTH_I1670BTH_I1668BTH_I0723BTH_I0722BTH_I1320BTH_I1319BTH_I2239BTH_I2240BTH_I2241BTH_I2242
BSP36773 BCEP18194_A4192BCEP18194_A4190BCEP18194_A5894BCEP18194_A5895BCEP18194_A3853BCEP18194_A3852BCEP18194_A5108BCEP18194_A5107BCEP18194_A5106BCEP18194_A5105
BPSE320373 BURPS668_2848BURPS668_2850BURPS668_0908BURPS668_0907BURPS668_3264BURPS668_3265BURPS668_2184BURPS668_2183BURPS668_2182BURPS668_2181
BPSE320372 BURPS1710B_A3207BURPS1710B_A3209BURPS1710B_A1123BURPS1710B_A1122BURPS1710B_A3583BURPS1710B_A3584BURPS1710B_A2551BURPS1710B_A2550BURPS1710B_A2549BURPS1710B_A2548
BPSE272560 BPSL2481BPSL2483BPSL0860BPSL0859BPSL2814BPSL2815BPSL1518BPSL1519BPSL1520BPSL1521
BPET94624 BPET1921BPET1919BPET0831BPET0830BPET0827BPET0826BPET2025BPET2026BPET2027BPET2028
BPER257313 BP2687BP2689BP0247BP0246BP0244BP0243BP2193BP2192BP2191BP2190
BPAR257311 BPP1670BPP1668BPP3620BPP3621BPP3623BPP3624BPP2849BPP2848BPP2847BPP2846
BMAL320389 BMA10247_0239BMA10247_0237BMA10247_0115BMA10247_0114BMA10247_2192BMA10247_2193BMA10247_1101BMA10247_1100BMA10247_1099BMA10247_1098
BMAL320388 BMASAVP1_A2535BMASAVP1_A2537BMASAVP1_A0666BMASAVP1_A0665BMASAVP1_A0514BMASAVP1_A0513BMASAVP1_A1829BMASAVP1_A1828BMASAVP1_A1827BMASAVP1_A1826
BMAL243160 BMA_0392BMA_0394BMA_0366BMA_0365BMA_2314BMA_2315BMA_1340BMA_1339BMA_1338BMA_1337
BCEN331272 BCEN2424_1078BCEN2424_1076BCEN2424_2562BCEN2424_2563BCEN2424_0765BCEN2424_0764BCEN2424_1807BCEN2424_1806BCEN2424_1805BCEN2424_1804
BCEN331271 BCEN_0599BCEN_0597BCEN_1951BCEN_1952BCEN_0281BCEN_0280BCEN_6272BCEN_6274BCEN_6275
BBRO257310 BB3438BB3440BB4055BB4056BB4058BB4059BB3170BB3169BB3168BB3167
BAMB398577 BAMMC406_0958BAMMC406_0956BAMMC406_2481BAMMC406_2482BAMMC406_0685BAMMC406_0684BAMMC406_1718BAMMC406_1717BAMMC406_1716BAMMC406_1715
BAMB339670 BAMB_0954BAMB_0952BAMB_2610BAMB_2611BAMB_0660BAMB_0659BAMB_1745BAMB_1744BAMB_1743BAMB_1742
ASP76114 EBA5206EBA5204EBA4453EBA4451EBA658EBA7097EBA1255EBA1254EBA1253EBA1252
ASP62928 AZO1518AZO1516AZO1244AZO1243AZO3126AZO3131AZO0932AZO0933AZO0934AZO0935
ASP232721 AJS_3346AJS_3349AJS_0983AJS_0978AJS_3111AJS_1175AJS_1176AJS_1177AJS_1178
ASAL382245 ASA_0858ASA_0857ASA_3373ASA_3372ASA_3371ASA_3370ASA_3369ASA_3368ASA_3367ASA_3366
APLE434271 APJL_1153APJL_0131APJL_1154APJL_1155APJL_2005APJL_2007APJL_2008APJL_2009APJL_1093APJL_1092
APLE416269 APL_1134APL_0130APL_1135APL_1136APL_1958APL_1960APL_1961APL_1962APL_1077APL_1076
AHYD196024 AHA_3459AHA_3460AHA_0920AHA_0921AHA_0922AHA_0923AHA_0924AHA_0925AHA_0926AHA_0927
AFER243159 AFE_0779AFE_1164AFE_0742AFE_1163AFE_1162AFE_1202AFE_1201AFE_1200AFE_1199
AEHR187272 MLG_1502MLG_1503MLG_0569MLG_0570MLG_0571MLG_0572MLG_0573MLG_0574MLG_0575MLG_0576
ABOR393595 ABO_2210ABO_2211ABO_2207ABO_2206ABO_2205ABO_2204ABO_2203ABO_2202ABO_2201ABO_2200
ABAU360910 BAV1378BAV1376BAV0732BAV0731BAV0725BAV0724BAV2338BAV2337BAV2336BAV2335
AAVE397945 AAVE_1893AAVE_1890AAVE_1306AAVE_1305AAVE_1300AAVE_1294AAVE_1429AAVE_1430AAVE_1431AAVE_1432


Organism features enriched in list (features available for 167 out of the 176 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00008061292
Arrangment:Singles 0.001617397286
Disease:Bubonic_plague 0.000517766
Disease:Dysentery 0.000517766
Disease:Gastroenteritis 0.00033361013
Disease:Legionnaire's_disease 0.006560844
Disease:Tularemia 0.001847055
Endospores:No 4.227e-931211
GC_Content_Range4:0-40 2.270e-1719213
GC_Content_Range4:40-60 1.392e-894224
GC_Content_Range4:60-100 0.002786354145
GC_Content_Range7:30-40 6.705e-1019166
GC_Content_Range7:50-60 1.946e-855107
GC_Content_Range7:60-70 0.000329854134
Genome_Size_Range5:0-2 3.092e-1312155
Genome_Size_Range5:2-4 5.935e-732197
Genome_Size_Range5:4-6 6.270e-20100184
Genome_Size_Range5:6-10 0.00111162347
Genome_Size_Range9:1-2 3.293e-912128
Genome_Size_Range9:2-3 0.000055818120
Genome_Size_Range9:3-4 0.00950101477
Genome_Size_Range9:4-5 6.696e-74896
Genome_Size_Range9:5-6 5.488e-115288
Genome_Size_Range9:6-8 0.00006872238
Gram_Stain:Gram_Neg 2.027e-32155333
Habitat:Specialized 0.0011493653
Motility:No 6.106e-819151
Motility:Yes 3.608e-11112267
Optimal_temp.:- 0.001341589257
Optimal_temp.:35-37 0.0021799913
Oxygen_Req:Anaerobic 4.665e-106102
Oxygen_Req:Facultative 3.541e-886201
Pathogenic_in:Animal 0.00201772966
Pathogenic_in:No 6.152e-642226
Pathogenic_in:Plant 0.00031831115
Shape:Coccus 7.417e-9482
Shape:Rod 2.392e-18144347
Shape:Spiral 0.0007325234
Temp._range:Mesophilic 0.0004711149473
Temp._range:Thermophilic 0.0000737135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 92
Effective number of orgs (counting one per cluster within 468 clusters): 80

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17401
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TPEN368408 ncbi Thermofilum pendens Hrk 51
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 71
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P21
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
PTOR263820 ncbi Picrophilus torridus DSM 97900
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma1
PAER178306 ncbi Pyrobaculum aerophilum IM20
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR267377 ncbi Methanococcus maripaludis S21
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266950
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K11
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ABUT367737 ncbi Arcobacter butzleri RM40181


Names of the homologs of the genes in the group in each of these orgs
  G7842   G7841   EG11757   EG11363   EG11281   EG10595   EG10438   EG10437   EG10436   EG10435   
WSUC273121 WS0243
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX961
TWHI218496 TW0342
TWHI203267 TW406
TVOL273116
TTHE300852 TTHA0572
TTHE262724 TT_C0204
TPEN368408 TPEN_0832
TDEN326298 TMDEN_0722
TACI273075
STOK273063 ST2208
SSP84588 SYNW0094OR2354
SSP64471 GSYN0100
SSP387093 SUN_1742
SSP1131 SYNCC9605_0086
SSOL273057 SSO2195
SACI330779
PTOR263820
PMAR93060
PMAR74547 PMT0120
PMAR74546
PMAR59920 PMN2A_1214
PMAR167555 NATL1_20891
PMAR167546
PMAR167542
PMAR167540
PMAR167539 PRO_1797
PMAR146891
PISL384616
PFUR186497 PF1534
PAST100379 PAM182
PAER178306
MSYN262723
MSTA339860
MSED399549
MPUL272635 MYPU_0680
MPNE272634
MPEN272633
MMYC272632 MSC_0306
MMOB267748
MMAR444158 MMARC6_1623
MMAR426368 MMARC7_0290
MMAR402880 MMARC5_0557
MMAR267377 MMP1036
MLAB410358 MLAB_1703
MKAN190192 MK0847
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311 MFL222
MCAP340047 MCAP_0261
MBUR259564 MBUR_1703
MART243272 MART0611
MAEO419665 MAEO_0253
IHOS453591
HPYL85963 JHP0709
HPYL357544 HPAG1_0757
HPY
HHEP235279 HH_0828
HBUT415426 HBUT_1010
HACI382638
CSUL444179
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMET456442
CMAQ397948
CKOR374847
CJEJ407148 C8J_1213
CJEJ360109 JJD26997_0456
CJEJ354242 CJJ81176_1285
CJEJ195099 CJE_1405
CJEJ192222 CJ1269C
CHOM360107 CHAB381_1278
CFET360106 CFF8240_1209
CFEL264202 CF0631
CCUR360105 CCV52592_0486
CCON360104 CCC13826_0497
CABO218497 CAB364
BXEN266265
AYEL322098 AYWB_537
AURANTIMONAS
APER272557 APE2153
AFUL224325 AF_1420
ABUT367737 ABU_0642


Organism features enriched in list (features available for 86 out of the 92 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.00012845112
Arrangment:Singles 0.000038859286
Disease:Pharyngitis 0.000183768
Disease:bronchitis_and_pneumonitis 0.000183768
Endospores:No 3.961e-650211
GC_Content_Range4:0-40 1.887e-753213
GC_Content_Range4:60-100 1.137e-74145
GC_Content_Range7:0-30 0.00031351647
GC_Content_Range7:30-40 0.000707337166
GC_Content_Range7:60-70 7.811e-74134
Genome_Size_Range5:0-2 2.830e-2464155
Genome_Size_Range5:6-10 0.0035220147
Genome_Size_Range9:0-1 3.850e-71527
Genome_Size_Range9:1-2 6.427e-1549128
Genome_Size_Range9:3-4 0.0002119277
Gram_Stain:Gram_Pos 4.472e-102150
Habitat:Aquatic 0.00069212491
Habitat:Multiple 4.088e-78178
Habitat:Specialized 0.00133121653
Optimal_temp.:100 0.003114833
Optimal_temp.:37 0.000217828106
Oxygen_Req:Aerobic 0.003182017185
Oxygen_Req:Facultative 0.001387618201
Oxygen_Req:Microaerophilic 4.804e-61118
Shape:Irregular_coccus 0.00002191017
Shape:Oval 0.001913145
Shape:Rod 3.580e-1617347
Shape:Sphere 9.114e-121619
Shape:Spiral 2.765e-61634
Temp._range:Hyperthermophilic 0.00001541223
Temp._range:Mesophilic 0.008993462473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 26
Effective number of orgs (counting one per cluster within 468 clusters): 17

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
DNOD246195 ncbi Dichelobacter nodosus VCS1703A 0.000053594910
TCRU317025 ncbi Thiomicrospira crunogena XCL-2 0.0012609130010
NEUR228410 ncbi Nitrosomonas europaea ATCC 19718 0.0012904130310
NEUT335283 ncbi Nitrosomonas eutropha C91 0.0013513130910
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 1 0.0016963133910
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-00 0.00172449279
FTUL393011 ncbi Francisella tularensis holarctica OSU18 0.00174099289
LPNE297245 ncbi Legionella pneumophila Lens 0.0018829135310
HDUC233412 ncbi Haemophilus ducreyi 35000HP 0.0019252135610
LPNE400673 ncbi Legionella pneumophila Corby 0.0019539135810
LPNE297246 ncbi Legionella pneumophila Paris 0.0020124136210
FRANT ncbi Francisella tularensis tularensis SCHU S4 0.00222249549
NMUL323848 ncbi Nitrosospira multiformis ATCC 25196 0.0022791137910
FTUL393115 ncbi Francisella tularensis tularensis FSC198 0.00230619589
FTUL351581 Francisella tularensis holarctica FSC200 0.00230619589
FTUL418136 ncbi Francisella tularensis tularensis WY96-3418 0.00269359759
BCIC186490 Candidatus Baumannia cicadellinicola 0.00276436758
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN 0.00335396928
FTUL401614 ncbi Francisella novicida U112 0.005352910549
MFLA265072 ncbi Methylobacillus flagellatus KT 0.0053701150210
MCAP243233 ncbi Methylococcus capsulatus Bath 0.0056264150910
HSOM205914 ncbi Haemophilus somnus 129PT 0.0063787152810
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 25017 0.007794211009
HSOM228400 ncbi Haemophilus somnus 2336 0.0082659156810
ABOR393595 ncbi Alcanivorax borkumensis SK2 0.0095055159010
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-1 0.0096869159310


Names of the homologs of the genes in the group in each of these orgs
  G7842   G7841   EG11757   EG11363   EG11281   EG10595   EG10438   EG10437   EG10436   EG10435   
DNOD246195 DNO_0904DNO_0649DNO_0149DNO_0311DNO_1116DNO_1117DNO_0595DNO_0596DNO_0597DNO_0598
TCRU317025 TCR_0633TCR_0630TCR_1082TCR_1083TCR_1084TCR_1085TCR_1086TCR_1087TCR_1090TCR_1091
NEUR228410 NE0075NE0078NE0657NE0656NE1742NE1976NE1287NE1286NE1285NE1284
NEUT335283 NEUT_2290NEUT_2287NEUT_1895NEUT_1896NEUT_1828NEUT_0386NEUT_0961NEUT_0962NEUT_0963NEUT_0964
LPNE272624 LPG2741LPG2743LPG2699LPG2698LPG2697LPG2696LPG0009LPG0010LPG0484LPG0485
FTUL458234 FTA_0197FTA_1665FTA_1382FTA_1661FTA_0948FTA_0949FTA_0950FTA_0954FTA_0955
FTUL393011 FTH_0177FTH_1526FTH_1279FTH_1523FTH_0882FTH_0883FTH_0884FTH_0886FTH_0887
LPNE297245 LPL2666LPL2668LPL2627LPL2626LPL2625LPL2624LPL0009LPL0010LPL0524LPL0525
HDUC233412 HD_0452HD_1027HD_0451HD_0450HD_0743HD_0742HD_0741HD_0740HD_1809HD_1808
LPNE400673 LPC_0389LPC_0387LPC_0436LPC_0437LPC_0438LPC_0439LPC_0010LPC_0011LPC_2860LPC_2859
LPNE297246 LPP2797LPP2799LPP2754LPP2753LPP2752LPP2751LPP0009LPP0010LPP0548LPP0549
FRANT ORNFT.0483CYJEEMUTLMIAAHFQHFLXHFLKHFLC
NMUL323848 NMUL_A0714NMUL_A0711NMUL_A2531NMUL_A2532NMUL_A1144NMUL_A0092NMUL_A0447NMUL_A0446NMUL_A0445NMUL_A0444
FTUL393115 FTF0228CFTF0483CFTF0370CFTF0486FTF0629FTF0630FTF0631FTF0633FTF0634
FTUL351581 FTL_0183FTL_1580FTL_1307FTL_1576FTL_0897FTL_0898FTL_0899FTL_0903FTL_0904
FTUL418136 FTW_1861FTW_1587FTW_1704FTW_1584FTW_1100FTW_1099FTW_1098FTW_1096FTW_1095
BCIC186490 BCI_0586BCI_0585BCI_0584BCI_0583BCI_0581BCI_0580BCI_0579BCI_0578
CBLO291272 BPEN_077BPEN_079BPEN_080BPEN_081BPEN_082BPEN_083BPEN_084BPEN_085
FTUL401614 FTN_0068FTN_0574FTN_0274FTN_0577FTN_1052FTN_1051FTN_1050FTN_1048FTN_1047
MFLA265072 MFLA_1473MFLA_1475MFLA_1380MFLA_1381MFLA_1384MFLA_1385MFLA_1589MFLA_1588MFLA_1587MFLA_1586
MCAP243233 MCA_0539MCA_0537MCA_1300MCA_1296MCA_1692MCA_1691MCA_1983MCA_1982MCA_1981MCA_1980
HSOM205914 HS_1100HS_1099HS_1081HS_1082HS_1083HS_1084HS_1105HS_1104HS_0487HS_0488
FPHI484022 FPHI_0765FPHI_0264FPHI_0546FPHI_0261FPHI_1537FPHI_1538FPHI_1539FPHI_1542FPHI_1543
HSOM228400 HSM_1007HSM_1008HSM_1566HSM_1567HSM_1568HSM_1569HSM_1074HSM_1075HSM_1785HSM_1784
ABOR393595 ABO_2210ABO_2211ABO_2207ABO_2206ABO_2205ABO_2204ABO_2203ABO_2202ABO_2201ABO_2200
AEHR187272 MLG_1502MLG_1503MLG_0569MLG_0570MLG_0571MLG_0572MLG_0573MLG_0574MLG_0575MLG_0576


Organism features enriched in list (features available for 24 out of the 26 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Legionnaire's_disease 2.230e-644
Disease:Pneumonia 0.0097017312
Disease:Tularemia 7.704e-855
Disease:and_reproductive_problems 0.001626922
Disease:arthritis 0.001626922
Disease:myocarditis 0.001626922
Endospores:No 0.00157292211
GC_Content_Range4:0-40 0.005328815213
GC_Content_Range7:30-40 0.001305414166
Genome_Size_Range5:2-4 0.007192814197
Genome_Size_Range9:3-4 0.0061645877
Gram_Stain:Gram_Neg 0.000179222333
Optimal_temp.:- 0.004676317257
Oxygen_Req:Aerobic 0.000283216185
Pathogenic_in:Animal 0.00008331066



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181570.7132
GLYCOCAT-PWY (glycogen degradation I)2461630.6820
AST-PWY (arginine degradation II (AST pathway))1201050.6428
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001710.6154
PWY-5918 (heme biosynthesis I)2721590.5906
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951310.5836
PWY-1269 (CMP-KDO biosynthesis I)3251730.5794
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861610.5738
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251400.5673
PWY-5386 (methylglyoxal degradation I)3051650.5623
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911260.5571
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911600.5559
PWY-4041 (γ-glutamyl cycle)2791560.5534
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961610.5524
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901590.5509
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481730.5363
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761170.5328
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391700.5314
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81730.5313
PWY-5913 (TCA cycle variation IV)3011580.5206
TYRFUMCAT-PWY (tyrosine degradation I)1841180.5159
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491010.4923
PWY0-1182 (trehalose degradation II (trehalase))70630.4880
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831140.4877
GALACTITOLCAT-PWY (galactitol degradation)73640.4808
GLUCONSUPER-PWY (D-gluconate degradation)2291290.4755
PWY-5148 (acyl-CoA hydrolysis)2271280.4732
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911140.4643
GLUCARDEG-PWY (D-glucarate degradation I)152980.4571
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491330.4560
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491330.4560
PWY0-981 (taurine degradation IV)106780.4559
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96730.4531
LIPASYN-PWY (phospholipases)2121200.4523
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291560.4503
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94710.4427
KDOSYN-PWY (KDO transfer to lipid IVA I)1801070.4417
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791060.4367
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981710.4347
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551310.4275
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001430.4156
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135860.4142
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161720.4124
PWY-6196 (serine racemization)102710.4065
PWY-6134 (tyrosine biosynthesis IV)89650.4061
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50450.4052
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112750.4026
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221720.4026
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)1781010.4002



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7841   EG11757   EG11363   EG11281   EG10595   EG10438   EG10437   EG10436   EG10435   
G78420.9997970.9992760.9992770.9991640.9990260.9990420.9988350.998870.998821
G78410.9988370.9989760.9991360.9990640.9990610.9987530.998640.998709
EG117570.9997960.999550.9994030.9990770.9988520.9990170.998982
EG113630.999660.9995550.9994480.9993930.9992540.999214
EG112810.9998930.9997060.9993530.9991630.999151
EG105950.9998850.9997360.9995390.99952
EG104380.9999610.9997030.999675
EG104370.9997730.999716
EG104360.999994
EG10435



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PAIRWISE BLAST SCORES:

  G7842   G7841   EG11757   EG11363   EG11281   EG10595   EG10438   EG10437   EG10436   EG10435   
G78420.0f0---------
G7841-0.0f0--------
EG11757--0.0f0-------
EG11363---0.0f0------
EG11281----0.0f0-----
EG10595-----0.0f0----
EG10438------0.0f0---
EG10437-------0.0f0--
EG10436--------0.0f0-
EG10435---------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-2982 (HflB, integral membrane ATP-dependent zinc metallopeptidase) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.200, average score: 0.943)
  Genes in pathway or complex:
             0.7666 0.4485 EG11506 (ftsH) EG11506-MONOMER (ATP-dependent zinc metalloprotease FtsH)
   *in cand* 0.9994 0.9986 EG10436 (hflK) EG10436-MONOMER (regulator of FtsH protease)
   *in cand* 0.9994 0.9987 EG10435 (hflC) EG10435-MONOMER (regulator of FtsH protease)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9988 EG10437 (hflX) EG10437-MONOMER (GTPase associated with the 50S subunit of the ribosome)
   *in cand* 0.9996 0.9990 EG10438 (hfq) EG10438-MONOMER (RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins)
   *in cand* 0.9996 0.9990 EG10595 (miaA) EG10595-MONOMER (tRNA(i6A37) synthase)
   *in cand* 0.9995 0.9991 EG11281 (mutL) EG11281-MONOMER (MutL)
   *in cand* 0.9995 0.9990 EG11363 (amiB) NACMURLALAAMI2-MONOMER (N-acetylmuramoyl-L-alanine amidase 2)
   *in cand* 0.9993 0.9988 EG11757 (yjeE) EG11757-MONOMER (essential protein with weak ATPase activity)
   *in cand* 0.9991 0.9986 G7841 (rsgA) G7841-MONOMER (ribosome small subunit-dependent GTPase A)
   *in cand* 0.9992 0.9988 G7842 (orn) G7842-MONOMER (oligoribonuclease monomer)

- CPLX0-1321 (HflK-HflC complex; regulator of FtsH protease) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.200, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9994 0.9987 EG10435 (hflC) EG10435-MONOMER (regulator of FtsH protease)
   *in cand* 0.9994 0.9986 EG10436 (hflK) EG10436-MONOMER (regulator of FtsH protease)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9988 EG10437 (hflX) EG10437-MONOMER (GTPase associated with the 50S subunit of the ribosome)
   *in cand* 0.9996 0.9990 EG10438 (hfq) EG10438-MONOMER (RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins)
   *in cand* 0.9996 0.9990 EG10595 (miaA) EG10595-MONOMER (tRNA(i6A37) synthase)
   *in cand* 0.9995 0.9991 EG11281 (mutL) EG11281-MONOMER (MutL)
   *in cand* 0.9995 0.9990 EG11363 (amiB) NACMURLALAAMI2-MONOMER (N-acetylmuramoyl-L-alanine amidase 2)
   *in cand* 0.9993 0.9988 EG11757 (yjeE) EG11757-MONOMER (essential protein with weak ATPase activity)
   *in cand* 0.9991 0.9986 G7841 (rsgA) G7841-MONOMER (ribosome small subunit-dependent GTPase A)
   *in cand* 0.9992 0.9988 G7842 (orn) G7842-MONOMER (oligoribonuclease monomer)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10435 EG10436 EG10437 EG10438 EG10595 EG11281 EG11363 EG11757 (centered at EG10438)
G7841 G7842 (centered at G7842)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7842   G7841   EG11757   EG11363   EG11281   EG10595   EG10438   EG10437   EG10436   EG10435   
241/623368/623410/623308/623415/623410/623332/623394/623345/623353/623
AAEO224324:0:Tyes---1111-6690---
AAUR290340:2:Tyes783----0-3576-
AAVE397945:0:Tyes592589121160135136137138
ABAC204669:0:Tyes--214102079343732143213--
ABAU360910:0:Tyes65665487101621162016191618
ABOR393595:0:Tyes101176543210
ABUT367737:0:Tyes---0------
ACAU438753:0:Tyes---12450182693692176177
ACEL351607:0:Tyes11140---949-947621-
ACRY349163:8:Tyes--82314070-11351134--
ADEH290397:0:Tyes-29551308150615271317-033503351
AEHR187272:0:Tyes92892901234567
AFER243159:0:Tyes37-4180417416455454453452
AFUL224325:0:Tyes---------0
AHYD196024:0:Tyes2468246901234567
ALAI441768:0:Tyes-0------579-
AMAR234826:0:Tyes--682-0---530531
AMAR329726:9:Tyes-----1052-0--
AMET293826:0:Tyes-192901145169716961695-22482247
ANAE240017:0:Tyes0----90-95240753
AORE350688:0:Tyes-01106-117116115348--
APER272557:0:Tyes---------0
APHA212042:0:Tyes--175-----01
APLE416269:0:Tyes10020100310041867186918701871947946
APLE434271:0:Tno99109929931890189218931894931930
ASAL382245:5:Tyes1024112410240924082407240624052404
ASP1667:3:Tyes974----0-3724-
ASP232721:2:Tyes22852288-502051190191192193
ASP62928:0:Tyes608606326325223322380123
ASP62977:0:Tyes6786793-210574540-
ASP76114:2:Tyes266426622221222003747342341340339
AVAR240292:3:Tyes--01357-2409-1726-4931
AYEL322098:4:Tyes-0--------
BABO262698:0:Tno----0-----
BABO262698:1:Tno--11130-441176175447446
BAFZ390236:2:Fyes-0------107108
BAMB339670:3:Tno30330120032004101112111111101109
BAMB398577:3:Tno27727518261827101046104510441043
BAMY326423:0:Tyes-9240-105210761077---
BANT260799:0:Tno-34850-339333363335148217141714
BANT261594:2:Tno-34220-333332763275144116691669
BANT568206:2:Tyes-3060-399462463242621802180
BANT592021:2:Tno-36290-353734743473151617571757
BAPH198804:0:Tyes6--82---10
BAPH372461:0:Tyes2----0----
BBAC264462:0:Tyes01271-1267-210-459-1242
BBAC360095:0:Tyes--676163527-01278277
BBRO257310:0:Tyes2782809039049069073210
BBUR224326:21:Fno-0------102103
BCAN483179:0:Tno----0-----
BCAN483179:1:Tno--11770-478198197485484
BCEN331271:0:Tno------0-12
BCEN331271:2:Tno3263241696169710----
BCEN331272:3:Tyes31431217951796101041104010391038
BCER226900:1:Tyes-34980-340933583357335317421742
BCER288681:0:Tno-34140-332132673266326016851685
BCER315749:1:Tyes-21400-204720202019201312631263
BCER405917:1:Tyes-34180-332032613260325417711771
BCER572264:1:Tno-35430-345033893388338217421742
BCIC186490:0:Tyes8--7653210
BCLA66692:0:Tyes-146302608133513331332---
BFRA272559:1:Tyes-0322931------
BFRA295405:0:Tno-0363178------
BGAR290434:2:Fyes-0------103104
BHAL272558:0:Tyes-19860-185118491848-26522651
BHEN283166:0:Tyes---5680-451452774773
BHER314723:0:Fyes-0------100101
BJAP224911:0:Fyes--03566678057863756375757915790
BLIC279010:0:Tyes-1153022091283131213131340--
BLON206672:0:Tyes317----0----
BMAL243160:1:Tno26281017201721852851850849
BMAL320388:1:Tno19751977153152101289128812871286
BMAL320389:1:Tyes1221201020292030965964963962
BMEL224914:0:Tno----0-----
BMEL224914:1:Tno--1440458-626726801
BMEL359391:0:Tno----0-----
BMEL359391:1:Tno--10710-425171170432431
BOVI236:0:Tyes----0-----
BOVI236:1:Tyes--9820-387146145393392
BPAR257311:0:Tno2018681869187118721131113011291128
BPER257313:0:Tyes2206220843101738173717361735
BPET94624:0:Tyes1100109854101204120512061207
BPSE272560:1:Tyes163116331019721973671672673674
BPSE320372:1:Tno1971197310233923401411141014091408
BPSE320373:1:Tno1863186510226222631237123612351234
BPUM315750:0:Tyes-9640-1095111011111120--
BQUI283165:0:Tyes--0503210-454455750749
BSP107806:2:Tyes7--932--10
BSP36773:2:Tyes34934720852086101278127712761275
BSP376:0:Tyes--03244569852033573357252115210
BSUB:0:Tyes-1053019251179120712081217--
BSUI204722:0:Tyes----0-----
BSUI204722:1:Tyes--11440-461190189468467
BSUI470137:0:Tno----0-----
BSUI470137:1:Tno--9590-473203202480479
BTHA271848:1:Tno931929105905891485148614871488
BTHE226186:0:Tyes-109660------
BTHU281309:1:Tno-33380-324531953194318916371637
BTHU412694:1:Tno-31150-302129692968296215411541
BTRI382640:1:Tyes--01029230-1153115213711370
BTUR314724:0:Fyes-0------100101
BVIE269482:7:Tyes27427219121913101003100210011000
BWEI315730:4:Tyes-34110-326832083207320117111711
CABO218497:0:Tyes---0------
CACE272562:1:Tyes-6691786-774773772122900
CAULO:0:Tyes--288611990142510681069--
CBEI290402:0:Tyes-95627902344234323423961852-
CBLO203907:0:Tyes0-23-4-567
CBLO291272:0:Tno0-23-45678
CBOT36826:1:Tno-19342746--12271226-00
CBOT441770:0:Tyes-17622722-113611351134-00
CBOT441771:0:Tno-18542704-125512541253-00
CBOT441772:1:Tno-19012771-115511541153-00
CBOT498213:1:Tno-18612760-116211611160253100
CBOT508765:1:Tyes-6810-127112701269464550-
CBOT515621:2:Tyes-20872910-134113401339-00
CBOT536232:0:Tno-20942989-126612651264-00
CBUR227377:1:Tyes224-81797776-0--
CBUR360115:1:Tno488-352023-87--
CBUR434922:2:Tno258-135134132131-0--
CCAV227941:1:Tyes---109---0--
CCHL340177:0:Tyes-25419220701328-1106--
CCON360104:2:Tyes---0------
CCUR360105:0:Tyes---0------
CDES477974:0:Tyes-10201448943023534--
CDIF272563:1:Tyes-247502659-18641863647738-
CDIP257309:0:Tyes370----4-0--
CEFF196164:0:Fyes544----5-0--
CFEL264202:1:Tyes---0------
CFET360106:0:Tyes---0------
CGLU196627:0:Tyes541----4-0--
CHOM360107:1:Tyes---0------
CHUT269798:0:Tyes-2671-72902718-3767--
CHYD246194:0:Tyes-7350--652651---
CJAP155077:0:Tyes4142106543210
CJEI306537:0:Tyes0----619-616--
CJEJ192222:0:Tyes---0------
CJEJ195099:0:Tno---0------
CJEJ354242:2:Tyes---0------
CJEJ360109:0:Tyes---0------
CJEJ407148:0:Tno---0------
CKLU431943:1:Tyes-6040-803804805-222222
CMIC31964:2:Tyes316------0--
CMIC443906:2:Tyes0------596--
CMUR243161:1:Tyes---0---116--
CNOV386415:0:Tyes-131792--01-430430
CPEL335992:0:Tyes--189-----10
CPER195102:1:Tyes-6781113-969798905-0
CPER195103:0:Tno-6621082--4445878-0
CPER289380:3:Tyes-568984--4142782-0
CPHY357809:0:Tyes-21180--2012-18834453444
CPRO264201:0:Fyes-396-01130-1660--
CPSY167879:0:Tyes3942394301234567
CRUT413404:0:Tyes0448693--605-91395394
CSAL290398:0:Tyes104567891011
CSP501479:7:Fyes--131-0-----
CSP501479:8:Fyes---1330--35835901
CSP78:2:Tyes-035091204272319951241124219901991
CTEP194439:0:Tyes-1498-01946909-1310--
CTET212717:0:Tyes-5091623--580-142300
CTRA471472:0:Tyes---0---114--
CTRA471473:0:Tno---0---114--
CVES412965:0:Tyes0411637--565--359358
CVIO243365:0:Tyes1045104225382539020922245224422432242
DARO159087:0:Tyes242773721871943210
DDES207559:0:Tyes----31381428-026082609
DETH243164:0:Tyes--0-766335-331--
DGEO319795:1:Tyes--0--806----
DHAF138119:0:Tyes-11062407-310---
DNOD246195:0:Tyes7294890156933934436437438439
DOLE96561:0:Tyes-268764499401634--404405
DPSY177439:2:Tyes-306---869-187410
DRAD243230:3:Tyes--652--0--445-
DRED349161:0:Tyes-460163914456256236220--
DSHI398580:5:Tyes--31108220-1224122324092408
DSP216389:0:Tyes--0-655303-299--
DSP255470:0:Tno--0-675324-301--
DVUL882:1:Tyes-1724-187601045-2738199198
ECAN269484:0:Tyes----0---630631
ECAR218491:0:Tyes363776543210
ECHA205920:0:Tyes----0---156157
ECOL199310:0:Tno104567891011
ECOL316407:0:Tno107891011121314
ECOL331111:6:Tno1045789101112
ECOL362663:0:Tno1089101112131415
ECOL364106:1:Tno107891011121314
ECOL405955:2:Tyes1056789101112
ECOL409438:6:Tyes107891011121314
ECOL413997:0:Tno107891011121314
ECOL439855:4:Tno104567891011
ECOL469008:0:Tno131476543210
ECOL481805:0:Tno131476543210
ECOL585034:0:Tno107891011121314
ECOL585035:0:Tno107891011121314
ECOL585055:0:Tno107891011121314
ECOL585056:2:Tno107891011121314
ECOL585057:0:Tno107891011121314
ECOL585397:0:Tno107891011121314
ECOL83334:0:Tno107891011121314
ECOLI:0:Tno1089101112131415
ECOO157:0:Tno107891011121314
EFAE226185:3:Tyes-20480-20891142----
EFER585054:1:Tyes1089101112131415
ELIT314225:0:Tyes--03511559924924812731274
ERUM254945:0:Tyes----0---656657
ERUM302409:0:Tno----0---652653
ESP42895:1:Tyes107891011121314
FALN326424:0:Tyes04156---3863-3858--
FJOH376686:0:Tyes-308273443990--970--
FMAG334413:1:Tyes-0559-7980----
FNOD381764:0:Tyes-1597---1540-580581
FNUC190304:0:Tyes-1259150919141042368--0-
FPHI484022:1:Tyes5203296-013291330133113341335
FRANT:0:Tno0248142-251378379380382383
FSP106370:0:Tyes02722---2465-2460--
FSP1855:0:Tyes44800---275-278--
FSUC59374:0:Tyes0102396-------
FTUL351581:0:Tno01234993-1230635636637641642
FTUL393011:0:Tno01116919-1114589590591592593
FTUL393115:0:Tyes0242138-245371372373375376
FTUL401614:0:Tyes0502205-505976975974972971
FTUL418136:0:Tno620384487-38154310
FTUL458234:0:Tno01160946-1158629630631632633
GBET391165:0:Tyes---01811200841842--
GFOR411154:0:Tyes-01434-452315-2778--
GKAU235909:1:Tyes-969030851099110411051116--
GMET269799:1:Tyes-010966331271127012691767--
GOXY290633:5:Tyes--16412587846210---
GSUL243231:0:Tyes-15157868079869859840--
GTHE420246:1:Tyes-8110-940944945956--
GURA351605:0:Tyes-015261592973974975113--
GVIO251221:0:Tyes--827--1088-1992-0
HARS204773:0:Tyes4374344310815816817818
HAUR316274:2:Tyes-6742071-741350-0--
HBUT415426:0:Tyes---------0
HCHE349521:0:Tyes111287543210
HDUC233412:0:Tyes25091024624524424311741173
HHAL349124:0:Tyes0-449448447446445444443442
HHEP235279:0:Tyes---0------
HINF281310:0:Tyes175417530123421-157156
HINF374930:0:Tyes4334343453443433420-273274
HINF71421:0:Tno161216110123329-8180
HMAR272569:8:Tyes----669----0
HMOD498761:0:Tyes-42201026890887886879--
HMUK485914:1:Tyes----0----2636
HNEP81032:0:Tyes--14122214580152915281718
HPYL357544:1:Tyes---0------
HPYL85963:0:Tno---0------
HSAL478009:4:Tyes----0----121
HSOM205914:1:Tyes61461359559659759861961801
HSOM228400:0:Tno015595605615626768779778
HSP64091:2:Tno----0----124
HWAL362976:1:Tyes----0---3737
ILOI283942:0:Tyes2024202501234567
JSP290400:1:Tyes--18493011834-01946945
JSP375286:0:Tyes40039743101691169016891688
KPNE272620:2:Tyes1056789101112
KRAD266940:2:Fyes23352112783--3-02977-
LACI272621:0:Tyes-889321-0-----
LBIF355278:2:Tyes--0---433---
LBIF456481:2:Tno--0---453---
LBOR355276:1:Tyes-2182-01521-1243---
LBOR355277:1:Tno-0-21751867-1406---
LBRE387344:2:Tyes-864586--894--0-
LCAS321967:1:Tyes-6070-1204---71-
LCHO395495:0:Tyes0-1491481443041907190619051904
LDEL321956:0:Tyes--0-780-----
LDEL390333:0:Tyes--0-712-----
LGAS324831:0:Tyes-338840-0-----
LHEL405566:0:Tyes-807296-0-----
LINN272626:1:Tno-627877-10901---
LINT189518:1:Tyes-0-33271050-1394---
LINT267671:1:Tno-0-6092350-2086---
LINT363253:3:Tyes----3450--392393
LJOH257314:0:Tyes-859257-0-----
LLAC272622:5:Tyes-16060-1906-----
LLAC272623:0:Tyes-0--282-----
LMES203120:1:Tyes-021-65-----
LMON169963:0:Tno-553811-11001---
LMON265669:0:Tyes-531794-11201---
LPLA220668:0:Tyes-1168421-17001074--0-
LPNE272624:0:Tno27252727268426832682268101474475
LPNE297245:1:Fno26532655261326122611261001513514
LPNE297246:1:Fyes27882790274427432742274101536537
LPNE400673:0:Tno3753734214224234240127922791
LREU557436:0:Tyes-8020-128838----
LSAK314315:0:Tyes-3661016-0-----
LSPH444177:1:Tyes-0-2279158162-276124852484
LWEL386043:0:Tyes-529790-11101---
LXYL281090:0:Tyes0416-----158--
MABS561007:1:Tyes0----1519-1517--
MACE188937:0:Tyes-2842--0-----
MAEO419665:0:Tyes---------0
MAER449447:0:Tyes--5965216-0-2129--
MAQU351348:2:Tyes101176543210
MART243272:0:Tyes-0--------
MAVI243243:0:Tyes0----1936-1934--
MBAR269797:1:Tyes-1191--0-----
MBOV233413:0:Tno0----214-212--
MBOV410289:0:Tno0----215-213--
MBUR259564:0:Tyes----0-----
MCAP243233:0:Tyes20708704108110801361136013591358
MCAP340047:0:Tyes-0--------
MEXT419610:0:Tyes--17699991601017017143
MFLA265072:0:Tyes93950145209208207206
MFLO265311:0:Tyes-0--------
MGIL350054:3:Tyes0----1431-14291121-
MKAN190192:0:Tyes---------0
MLAB410358:0:Tyes---------0
MLEP272631:0:Tyes0------346--
MLOT266835:2:Tyes--379106399988149150994993
MMAG342108:0:Tyes--1877866204411340111171118
MMAR267377:0:Tyes---------0
MMAR368407:0:Tyes-395-------0
MMAR394221:0:Tyes--0121153119351362136319381937
MMAR402880:1:Tyes---------0
MMAR426368:0:Tyes---------0
MMAR444158:0:Tyes---------0
MMAZ192952:0:Tyes-897--0-----
MMYC272632:0:Tyes-0--------
MPET420662:1:Tyes920923383943463210
MPUL272635:0:Tyes---------0
MSME246196:0:Tyes1972----0-2--
MSP164756:1:Tno1495----0-2972-
MSP164757:0:Tno1506----0-2991-
MSP189918:2:Tyes1520----0-2985-
MSP266779:3:Tyes--31521280013131184118313191318
MSP400668:0:Tyes91076543210
MSP409:2:Tyes--051345899546552295230564563
MSUC221988:0:Tyes105678910113114
MTBCDC:0:Tno0----232-230--
MTBRV:0:Tno0----222-220--
MTHE187420:0:Tyes--------00
MTHE264732:0:Tyes-38316020581582583---
MTHE349307:0:Tyes----0----245
MTUB336982:0:Tno0----207-205--
MTUB419947:0:Tyes0----227-225--
MVAN350058:0:Tyes1647------0--
MXAN246197:0:Tyes5606877-243125682282-017431744
NARO279238:0:Tyes--75395203-0114311430
NEUR228410:0:Tyes03593592168919311228122712261225
NEUT335283:2:Tyes187718741493149414270567568569570
NFAR247156:2:Tyes10970---3664-3661--
NGON242231:0:Tyes0154513301331652826263602--
NHAM323097:2:Tyes--01708299925901726172725952594
NMEN122586:0:Tno153901851841134653471755--
NMEN122587:0:Tyes0155513601361983505341784--
NMEN272831:0:Tno89012531254986601410817--
NMEN374833:0:Tno0150113081309980510347784--
NMUL323848:3:Tyes6206172419242010460354353352351
NOCE323261:1:Tyes5-21022182217221622152214
NPHA348780:2:Tyes----0----300
NSEN222891:0:Tyes--------01
NSP103690:6:Tyes--22290-5226-3804--
NSP35761:0:Tyes---------0
NSP35761:1:Tyes0350---2502-24961237-
NSP387092:0:Tyes-0-671------
NWIN323098:0:Tyes--01694253323251418141923302329
OANT439375:4:Tyes----0-----
OANT439375:5:Tyes--01488-10101426142510031004
OCAR504832:0:Tyes--01501275379916151616794795
OIHE221109:0:Tyes-8820-1004100610071020--
OTSU357244:0:Fyes--181-63---01
PABY272844:0:Tyes--------00
PACN267747:0:Tyes625252---0-2--
PAER208963:0:Tyes101176543210
PAER208964:0:Tno101176543210
PARC259536:0:Tyes12011202562--56456501791-
PARS340102:0:Tyes--------00
PAST100379:0:Tyes-0--------
PATL342610:0:Tyes01492493494495496497498499
PCAR338963:0:Tyes-19120510296297298104912671268
PCRY335284:1:Tyes133213331096--1094109302049-
PDIS435591:0:Tyes-98995515800--900--
PENT384676:0:Tyes121376543210
PFLU205922:0:Tyes1056789101112
PFLU216595:1:Tyes1056789101112
PFLU220664:0:Tyes1056789101112
PFUR186497:0:Tyes---------0
PGIN242619:0:Tyes-12964565610--1282--
PHAL326442:1:Tyes22122001234567
PHOR70601:0:Tyes--------00
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