CANDIDATE ID: 132

CANDIDATE ID: 132

NUMBER OF GENES: 10
AVERAGE SCORE:    9.9898842e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7638 (yraI) (b3143)
   Products of gene:
     - G7638-MONOMER (predicted pilin chaperone)

- G6795 (ydeT) (b1505)
   Products of gene:
     - G6795-MONOMER (predicted protein)

- G6794 (ydeS) (b1504)
   Products of gene:
     - G6794-MONOMER (predicted fimbrial-like adhesin protein)

- G6482 (ycbS) (b0940)
   Products of gene:
     - G6482-MONOMER (predicted outer membrane usher protein)

- G6481 (ycbR) (b0939)
   Products of gene:
     - G6481-MONOMER (predicted periplasmic pilin chaperone)

- G6292 (sfmD) (b0532)
   Products of gene:
     - G6292-MONOMER (predicted outer membrane export usher protein)

- G6291 (sfmC) (b0531)
   Products of gene:
     - G6291-MONOMER (predicted pilin chaperone, periplasmic)

- EG11973 (ecpD) (b0140)
   Products of gene:
     - EG11973-MONOMER (probable pilin chaperone similar to PapD)

- EG10311 (fimD) (b4317)
   Products of gene:
     - EG10311-MONOMER (outer membrane protein; export and assembly of type 1 fimbriae)

- EG10310 (fimC) (b4316)
   Products of gene:
     - EG10310-MONOMER (periplasmic chaperone, required for type 1 fimbriae)



Back to top


ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 82
Effective number of orgs (counting one per cluster within 468 clusters): 39

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175810
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295310
YPES386656 ncbi Yersinia pestis Pestoides F10
YPES377628 ncbi Yersinia pestis Nepal51610
YPES360102 ncbi Yersinia pestis Antiqua10
YPES349746 ncbi Yersinia pestis Angola10
YPES214092 ncbi Yersinia pestis CO9210
YPES187410 ncbi Yersinia pestis KIM 1010
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808110
XFAS405440 ncbi Xylella fastidiosa M129
XFAS183190 ncbi Xylella fastidiosa Temecula19
XFAS160492 ncbi Xylella fastidiosa 9a5c9
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT210
SSON300269 ncbi Shigella sonnei Ss04610
SPRO399741 ncbi Serratia proteamaculans 56810
SHIGELLA ncbi Shigella flexneri 2a str. 2457T10
SFLE373384 ncbi Shigella flexneri 5 str. 840110
SFLE198214 ncbi Shigella flexneri 2a str. 30110
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47610
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915010
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1810
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty210
SDYS300267 ncbi Shigella dysenteriae Sd1979
SBOY300268 ncbi Shigella boydii Sb22710
RMET266264 ncbi Ralstonia metallidurans CH3410
REUT381666 ncbi Ralstonia eutropha H1610
REUT264198 ncbi Ralstonia eutropha JMP13410
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC300010
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a10
PSP56811 Psychrobacter sp.10
PPUT76869 ncbi Pseudomonas putida GB-110
PPUT351746 ncbi Pseudomonas putida F19
PPUT160488 ncbi Pseudomonas putida KT24409
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO110
PFLU220664 ncbi Pseudomonas fluorescens Pf-510
PFLU216595 ncbi Pseudomonas fluorescens SBW2510
PFLU205922 ncbi Pseudomonas fluorescens Pf0-19
PAER208964 ncbi Pseudomonas aeruginosa PAO19
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA149
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857810
HDUC233412 ncbi Haemophilus ducreyi 35000HP9
ESP42895 Enterobacter sp.10
EFER585054 ncbi Escherichia fergusonii ATCC 3546910
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H710
ECOL585397 ncbi Escherichia coli ED1a10
ECOL585057 ncbi Escherichia coli IAI3910
ECOL585056 ncbi Escherichia coli UMN02610
ECOL585055 ncbi Escherichia coli 5598910
ECOL585035 ncbi Escherichia coli S8810
ECOL585034 ncbi Escherichia coli IAI110
ECOL481805 ncbi Escherichia coli ATCC 873910
ECOL469008 ncbi Escherichia coli BL21(DE3)10
ECOL439855 ncbi Escherichia coli SMS-3-510
ECOL413997 ncbi Escherichia coli B str. REL60610
ECOL409438 ncbi Escherichia coli SE1110
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8910
ECOL362663 ncbi Escherichia coli 53610
ECOL331111 ncbi Escherichia coli E24377A10
ECOL316407 ncbi Escherichia coli K-12 substr. W311010
ECOL199310 ncbi Escherichia coli CFT07310
CVIO243365 ncbi Chromobacterium violaceum ATCC 1247210
BXEN266265 ncbi Burkholderia xenovorans LB40010
BTHA271848 ncbi Burkholderia thailandensis E26410
BPSE320373 ncbi Burkholderia pseudomallei 66810
BPSE320372 ncbi Burkholderia pseudomallei 1710b10
BPSE272560 ncbi Burkholderia pseudomallei K9624310
BPET94624 Bordetella petrii10
BPER257313 ncbi Bordetella pertussis Tohama I9
BPAR257311 ncbi Bordetella parapertussis 128229
BMAL243160 ncbi Burkholderia mallei ATCC 233449
BCEN331272 ncbi Burkholderia cenocepacia HI24249
BCEN331271 ncbi Burkholderia cenocepacia AU 10549
BBRO257310 ncbi Bordetella bronchiseptica RB509
BAMB398577 ncbi Burkholderia ambifaria MC40-610
BAMB339670 ncbi Burkholderia ambifaria AMMD10
ASP62977 ncbi Acinetobacter sp. ADP110
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44910
AHYD196024 Aeromonas hydrophila dhakensis9
ABAU360910 ncbi Bordetella avium 197N10


Names of the homologs of the genes in the group in each of these orgs
  G7638   G6795   G6794   G6482   G6481   G6292   G6291   EG11973   EG10311   EG10310   
YPSE349747 YPSIP31758_4105YPSIP31758_2676YPSIP31758_4107YPSIP31758_2676YPSIP31758_1676YPSIP31758_1677YPSIP31758_1676YPSIP31758_1676YPSIP31758_1677YPSIP31758_4105
YPSE273123 YPTB3894YPTB1336YPTB3896YPTB1336YPTB2373YPTB2372YPTB2373YPTB2373YPTB2372YPTB3894
YPES386656 YPDSF_3783YPDSF_4097YPDSF_3786YPDSF_2392YPDSF_1740YPDSF_1739YPDSF_1740YPDSF_1740YPDSF_1739YPDSF_3783
YPES377628 YPN_3688YPN_MT0065YPN_3691YPN_2674YPN_1922YPN_1921YPN_1922YPN_1922YPN_1921YPN_3688
YPES360102 YPA_4131YPA_MT0069YPA_4135YPA_1022YPA_1813YPA_1812YPA_1813YPA_1813YPA_1812YPA_4131
YPES349746 YPANGOLA_A4164YPANGOLA_A1531YPANGOLA_A4167YPANGOLA_A1531YPANGOLA_A2659YPANGOLA_A2658YPANGOLA_A2659YPANGOLA_A2659YPANGOLA_A2658YPANGOLA_A4164
YPES214092 YPO4041YPMT1.83YPO4044YPO1305YPO1708YPO1709YPO1708YPO1708YPO1709YPO4041
YPES187410 Y4060Y1099Y4063Y2880Y1870Y1871Y1870Y1870Y1871Y4060
YENT393305 YE1113YE1112YE0779YE1112YE1113YE1112YE1113YE2694YE1112YE1113
XFAS405440 XFASM12_0064XFASM12_0063XFASM12_0065XFASM12_0063XFASM12_0063XFASM12_0064XFASM12_0064XFASM12_0063XFASM12_0064
XFAS183190 PD_0061PD_0060PD_0062PD_0060PD_0060PD_0061PD_0061PD_0060PD_0061
XFAS160492 XF0082XF0081XF0083XF0081XF0081XF0082XF0082XF0081XF0082
STYP99287 STM3639STM0023STM0026STM0546STM0022STM0546STM0545STM0339STM0546STM0545
SSON300269 SSO_0943SSO_3289SSO_0947SSO_3289SSO_0943SSO_3289SSO_0943SSO_0152SSO_3289SSO_0943
SPRO399741 SPRO_2873SPRO_1053SPRO_1519SPRO_2874SPRO_1054SPRO_1521SPRO_1520SPRO_1520SPRO_1521SPRO_1054
SHIGELLA YRAIYCBSFIMFYCBSFIMCYCBSSFMCYRAIYCBSFIMC
SFLE373384 SFV_3171SFV_4209SFV_4208SFV_0949SFV_0948SFV_0949SFV_4210SFV_3171SFV_0949SFV_4210
SFLE198214 AAN44649.1AAN42570.1AAN45623.1AAN42570.1AAN45626.1AAN42570.1AAN42116.1AAN44649.1AAN42570.1AAN45626.1
SENT454169 SEHA_C3961SEHA_C0026SEHA_C0029SEHA_C0199SEHA_C0025SEHA_C0199SEHA_C0655SEHA_C0210SEHA_C0199SEHA_C0655
SENT321314 SCH_3570SCH_0585SCH_3571SCH_0585SCH_0021SCH_0585SCH_0021SCH_0382SCH_0585SCH_0021
SENT295319 SPA2180SPA0023SPA2182SPA2179SPA0022SPA4403SPA2180SPA0184SPA2179SPA2180
SENT220341 STY0592STY0593STY0031STY0593STY0025STY0593STY0592STY0206STY0593STY0592
SENT209261 T2318T2317T0027T2317T0023T2317T2318T0189T2317T2318
SDYS300267 SDY_0912SDY_0916SDY_0912SDY_2535SDY_2287SDY_0256SDY_2535SDY_4570SDY_0917
SBOY300268 SBO_4366SBO_3240SBO_4368SBO_3240SBO_4366SBO_3240SBO_4366SBO_0126SBO_3240SBO_4366
RMET266264 RMET_4960RMET_4252RMET_4250RMET_4959RMET_0575RMET_4959RMET_0575RMET_4251RMET_4252RMET_0575
REUT381666 H16_B2091H16_B2090H16_B2092H16_B2090H16_B2091H16_B2090H16_B2091H16_B2091H16_B2090H16_B2091
REUT264198 REUT_A1695REUT_A1696REUT_A1694REUT_A1696REUT_A1695REUT_A1696REUT_A1695REUT_A1695REUT_A1696REUT_A1695
PSYR223283 PSPTO_1313PSPTO_2228PSPTO_2227PSPTO_2228PSPTO_1317PSPTO_2228PSPTO_1313PSPTO_2229PSPTO_2228PSPTO_2229
PSYR205918 PSYR_1132PSYR_2037PSYR_2036PSYR_1133PSYR_2038PSYR_1133PSYR_1132PSYR_2038PSYR_1133PSYR_1132
PSP56811 PSYCPRWF_1818PSYCPRWF_1817PSYCPRWF_1819PSYCPRWF_1817PSYCPRWF_1818PSYCPRWF_1817PSYCPRWF_1818PSYCPRWF_1818PSYCPRWF_1817PSYCPRWF_1818
PPUT76869 PPUTGB1_1465PPUTGB1_1455PPUTGB1_1454PPUTGB1_1455PPUTGB1_1465PPUTGB1_1455PPUTGB1_1465PPUTGB1_1465PPUTGB1_1455PPUTGB1_1465
PPUT351746 PPUT_3754PPUT_3835PPUT_3835PPUT_3754PPUT_3755PPUT_3754PPUT_3825PPUT_3835PPUT_3754
PPUT160488 PP_1890PP_1889PP_1889PP_1890PP_1889PP_1890PP_1890PP_1889PP_1890
PLUM243265 PLU2158PLU2157PLU2159PLU0791PLU2158PLU0791PLU0787PLU0506PLU0995PLU2158
PFLU220664 PFL_3923PFL_3924PFL_1462PFL_3924PFL_3923PFL_1464PFL_3923PFL_1463PFL_3924PFL_3923
PFLU216595 PFLU1611PFLU1610PFLU1612PFLU1610PFLU1611PFLU1610PFLU1611PFLU1094PFLU1610PFLU1611
PFLU205922 PFL_3043PFL_3044PFL_3044PFL_3043PFL_3044PFL_3043PFL_3043PFL_3044PFL_3043
PAER208964 PA2132PA2130PA2130PA4085PA4084PA0993PA4085PA2130PA0993
PAER208963 PA14_37000PA14_51450PA14_37030PA14_11070PA14_11080PA14_51460PA14_11070PA14_37030PA14_51460
KPNE272620 GKPORF_B2310GKPORF_B2642GKPORF_B2643GKPORF_B3830GKPORF_B2641GKPORF_B2642GKPORF_B2641GKPORF_B2623GKPORF_B2642GKPORF_B2641
HDUC233412 HD_0284HD_0283HD_0281HD_0283HD_0284HD_0284HD_0284HD_0283HD_0284
ESP42895 ENT638_2449ENT638_1071ENT638_0987ENT638_1071ENT638_0989ENT638_1071ENT638_0989ENT638_0085ENT638_1071ENT638_0989
EFER585054 EFER_3403EFER_3402EFER_3401EFER_3402EFER_3403EFER_3402EFER_3403EFER_0163EFER_3402EFER_3403
ECOO157 YRAIZ2202Z2204SFMDYCBRSFMDSFMCECPDSFMDFIMC
ECOL83334 ECS4021ECS2110ECS2109ECS1024ECS1022ECS1024ECS0593ECS0144ECS1024ECS5275
ECOL585397 ECED1_4230ECED1_1647ECED1_4231ECED1_4229ECED1_5201ECED1_4098ECED1_5201ECED1_0145ECED1_5202ECED1_5201
ECOL585057 ECIAI39_4789ECIAI39_4790ECIAI39_4791ECIAI39_0497ECIAI39_2208ECIAI39_0497ECIAI39_0496ECIAI39_0144ECIAI39_0497ECIAI39_4789
ECOL585056 ECUMN_4923ECUMN_1759ECUMN_1758ECUMN_1759ECUMN_4923ECUMN_1759ECUMN_0571ECUMN_0137ECUMN_1759ECUMN_4923
ECOL585055 EC55989_3563EC55989_1637EC55989_1636EC55989_4000EC55989_0988EC55989_4201EC55989_0545EC55989_0134EC55989_1637EC55989_1638
ECOL585035 ECS88_4934ECS88_4935ECS88_4936ECS88_4935ECS88_4934ECS88_4935ECS88_4934ECS88_0150ECS88_4935ECS88_4934
ECOL585034 ECIAI1_3293ECIAI1_1515ECIAI1_1514ECIAI1_4533ECIAI1_0980ECIAI1_4533ECIAI1_0533ECIAI1_0138ECIAI1_4533ECIAI1_4532
ECOL481805 ECOLC_0555ECOLC_2152ECOLC_2153ECOLC_3090ECOLC_2657ECOLC_3090ECOLC_3091ECOLC_3519ECOLC_3090ECOLC_3091
ECOL469008 ECBD_0597ECBD_3718ECBD_2135ECBD_0596ECBD_2656ECBD_3718ECBD_3127ECBD_3479ECBD_3718ECBD_3719
ECOL439855 ECSMS35_4843ECSMS35_1666ECSMS35_1667ECSMS35_1666ECSMS35_2180ECSMS35_1666ECSMS35_0576ECSMS35_0151ECSMS35_1666ECSMS35_4843
ECOL413997 ECB_03010ECB_01463ECB_01462ECB_04186ECB_00943ECB_04186ECB_00481ECB_00139ECB_04186ECB_04185
ECOL409438 ECSE_3429ECSE_1595ECSE_1594ECSE_4590ECSE_1000ECSE_4590ECSE_0556ECSE_0140ECSE_4590ECSE_4589
ECOL405955 APECO1_2114APECO1_632APECO1_631APECO1_632APECO1_2114APECO1_632APECO1_2114APECO1_1845APECO1_632APECO1_2114
ECOL364106 UTI89_C5013UTI89_C5014UTI89_C5015UTI89_C5014UTI89_C5013UTI89_C5014UTI89_C5013UTI89_C0154UTI89_C5014UTI89_C5013
ECOL362663 ECP_4651ECP_1499ECP_1498ECP_4652ECP_0295ECP_4652ECP_4651ECP_0150ECP_4652ECP_4651
ECOL331111 ECE24377A_3625ECE24377A_4914ECE24377A_1693ECE24377A_1055ECE24377A_1054ECE24377A_1055ECE24377A_0573ECE24377A_0143ECE24377A_1055ECE24377A_0573
ECOL316407 ECK3131:JW3112:B3143ECK1498:JW1499:B1505ECK1497:JW1498:B1504ECK4308:JW5780:B4317ECK0930:JW0922:B0939ECK4308:JW5780:B4317ECK0524:JW0520:B0531ECK0139:JW0136:B0140ECK4308:JW5780:B4317ECK4307:JW4279:B4316
ECOL199310 C5395C1934C1933C5396C5395C5396C5395C0171C5396C5395
CVIO243365 CV_1295CV_1296CV_1294CV_1296CV_1295CV_1296CV_1295CV_1295CV_1296CV_1295
BXEN266265 BXE_B2971BXE_B2970BXE_C1150BXE_C1151BXE_B2971BXE_B2970BXE_B2971BXE_B2971BXE_B2970BXE_B2971
BTHA271848 BTH_II0116BTH_II0117BTH_II0115BTH_II0117BTH_II0116BTH_II0117BTH_II0116BTH_II0116BTH_II0117BTH_II0116
BPSE320373 BURPS668_2032BURPS668_2031BURPS668_2033BURPS668_2031BURPS668_2032BURPS668_2031BURPS668_2032BURPS668_A0151BURPS668_2031BURPS668_2032
BPSE320372 BURPS1710B_A2420BURPS1710B_A2419BURPS1710B_A2421BURPS1710B_A2419BURPS1710B_A2420BURPS1710B_A2419BURPS1710B_A2420BURPS1710B_B1889BURPS1710B_A2419BURPS1710B_A2420
BPSE272560 BPSL1627BPSL1628BPSL1626BPSL1628BPSL1627BPSL1628BPSL1627BPSS0092BPSL1628BPSL1627
BPET94624 BPET0113BPET4130BPET0114BPET0112BPET4466BPET0112BPET4466BPET4466BPET0112BPET4466
BPER257313 BP1881BP1882BP1882BP1881BP1882BP1881BP1881BP1882BP1881
BPAR257311 BPP3025BPP3024BPP3024BPP3025BPP3024BPP3025BPP3025BPP3024BPP3025
BMAL243160 BMA_1022BMA_1023BMA_1023BMA_1022BMA_1023BMA_1022BMA_1022BMA_1023BMA_1022
BCEN331272 BCEN2424_1628BCEN2424_1626BCEN2424_1627BCEN2424_1628BCEN2424_1627BCEN2424_1628BCEN2424_1628BCEN2424_1627BCEN2424_1628
BCEN331271 BCEN_1148BCEN_1146BCEN_1147BCEN_1148BCEN_1147BCEN_1148BCEN_1148BCEN_1147BCEN_1148
BBRO257310 BB2991BB2990BB2990BB2991BB2990BB2991BB2991BB2990BB2991
BAMB398577 BAMMC406_3291BAMMC406_6638BAMMC406_1546BAMMC406_6638BAMMC406_3291BAMMC406_3292BAMMC406_6668BAMMC406_6637BAMMC406_3292BAMMC406_3291
BAMB339670 BAMB_4023BAMB_4024BAMB_1523BAMB_2831BAMB_1525BAMB_2831BAMB_4023BAMB_4023BAMB_4024BAMB_1525
ASP62977 ACIAD0120ACIAD0121ACIAD0119ACIAD0121ACIAD0120ACIAD0121ACIAD0120ACIAD0388ACIAD0121ACIAD0120
ASAL382245 ASA_3728ASA_3727ASA_3730ASA_3727ASA_3728ASA_3727ASA_3728ASA_3728ASA_3727ASA_3728
AHYD196024 AHA_0522AHA_0521AHA_0519AHA_0521AHA_0522AHA_0521AHA_0522AHA_0522AHA_0522
ABAU360910 BAV1964BAV1774BAV1777BAV1774BAV1964BAV1774BAV1964BAV1964BAV1963BAV1964


Organism features enriched in list (features available for 77 out of the 82 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000070528112
Arrangment:Singles 0.000219852286
Disease:Bubonic_plague 4.461e-666
Disease:Dysentery 4.461e-666
Disease:Gastroenteritis 0.0004314713
Disease:Melioidosis 0.002226433
Disease:Opportunistic_infections 0.001241245
Disease:Urinary_tract_infection 0.007769334
Endospores:No 0.000864516211
GC_Content_Range4:0-40 1.331e-151213
GC_Content_Range4:40-60 2.880e-750224
GC_Content_Range7:30-40 2.493e-111166
GC_Content_Range7:50-60 1.112e-1138107
GC_Content_Range7:60-70 0.007090326134
Genome_Size_Range5:0-2 2.056e-101155
Genome_Size_Range5:2-4 1.712e-95197
Genome_Size_Range5:4-6 7.098e-1150184
Genome_Size_Range5:6-10 1.880e-82147
Genome_Size_Range9:1-2 2.775e-81128
Genome_Size_Range9:2-3 9.767e-63120
Genome_Size_Range9:3-4 0.0007279277
Genome_Size_Range9:4-5 6.955e-72996
Genome_Size_Range9:5-6 0.00133842188
Genome_Size_Range9:6-8 1.153e-92038
Gram_Stain:Gram_Neg 4.052e-1472333
Habitat:Aquatic 0.0000127191
Habitat:Multiple 0.000243537178
Motility:No 6.957e-92151
Motility:Yes 7.247e-755267
Optimal_temp.:28-30 0.006630747
Oxygen_Req:Anaerobic 2.207e-61102
Oxygen_Req:Facultative 1.441e-849201
Pathogenic_in:Animal 0.00432361666
Pathogenic_in:Human 5.139e-646213
Pathogenic_in:No 4.804e-107226
Pathogenic_in:Rodent 0.006630747
Shape:Coccus 0.0000511182
Shape:Rod 4.354e-1574347
Temp._range:Mesophilic 5.947e-776473



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 534
Effective number of orgs (counting one per cluster within 468 clusters): 425

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VVUL216895 ncbi Vibrio vulnificus CMCP60
VVUL196600 ncbi Vibrio vulnificus YJ0160
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106330
VFIS312309 ncbi Vibrio fischeri ES1140
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-11
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10210
SMED366394 ncbi Sinorhizobium medicae WSM4190
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis0
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SCO ncbi Streptomyces coelicolor A3(2)0
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA10
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPRO298386 ncbi Photobacterium profundum SS90
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PENT384676 ncbi Pseudomonas entomophila L480
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSP400668 ncbi Marinomonas sp. MWYL10
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-60
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSP501479 Citreicella sp. SE450
CSAL290398 ncbi Chromohalobacter salexigens DSM 30430
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1680
BSP376 Bradyrhizobium sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1100
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
ASP1667 Arthrobacter sp.0
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABUT367737 ncbi Arcobacter butzleri RM40180
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7638   G6795   G6794   G6482   G6481   G6292   G6291   EG11973   EG10311   EG10310   
ZMOB264203
XORY360094
XORY342109
XORY291331
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WSUC273121
WPIP955
WPIP80849
VVUL216895
VVUL196600
VPAR223926
VFIS312309
VEIS391735
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TROS309801
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE292459
STHE264199
SSUI391296
SSUI391295
SSP94122
SSP84588
SSP64471
SSP644076
SSP387093
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSOL273057
SSED425104
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579
SONE211586 SO_4579
SMUT210007
SMEL266834
SMED366394
SMAR399550
SLOI323850
SLAC55218
SHAL458817
SHAE279808
SGOR29390
SGLO343509
SFUM335543
SERY405948
SEPI176280
SEPI176279
SELO269084
SDEN318161
SDEG203122
SCO
SBAL402882
SBAL399599
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779
RXYL266117
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSP357808
RSP101510
RSOL267608
RSAL288705
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMAS416276
RLEG216596
RFER338969
RFEL315456
RETL347834
RDEN375451
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSTU379731
PSP312153
PSP296591
PSP117
PRUM264731
PPRO298386
PPEN278197
PNAP365044
PMUL272843
PMOB403833
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PING357804
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PENT384676
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747
PABY272844
OTSU357244
OIHE221109
OCAR504832
OANT439375
NWIN323098
NSP387092
NSP35761
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSUC221988
MSTA339860
MSP409
MSP400668
MSP266779
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLOT266835
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940
JSP375286
JSP290400
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761
HMAR272569
HINF71421
HINF374930
HINF281310
HHEP235279
HHAL349124
HCHE349521
HBUT415426
HAUR316274
HARS204773
HACI382638
GVIO251221
GURA351605
GTHE420246
GSUL243231
GOXY290633
GMET269799
GKAU235909
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580
DRED349161
DRAD243230
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DGEO319795
DETH243164
DDES207559
DARO159087
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP78
CSP501479
CSAL290398
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHYD246194
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CBEI290402
CAULO
CACE272562
CABO218497
BWEI315730
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BSUI470137
BSUI204722
BSUB
BSP376
BSP107806
BQUI283165
BPUM315750
BOVI236
BMEL359391
BMEL224914
BLON206672
BLIC279010
BJAP224911
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405
BFRA272559
BCLA66692
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BCAN483179
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAFZ390236
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62928
ASP232721
ASP1667
APLE434271
APLE416269
APHA212042
APER272557
AORE350688
ANAE240017
AMET293826
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACRY349163
ACEL351607
ACAU438753
ABUT367737
ABAC204669
AAVE397945
AAUR290340
AAEO224324


Organism features enriched in list (features available for 500 out of the 534 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000042082112
Arrangment:Singles 0.0000513229286
Disease:Gastroenteritis 0.0006931613
Disease:Opportunistic_infections 0.001665515
Disease:urinary_tract_infection 0.009643014
Endospores:No 0.0001730195211
Endospores:Yes 0.00019175353
GC_Content_Range4:0-40 5.403e-17212213
GC_Content_Range4:40-60 2.634e-7171224
GC_Content_Range4:60-100 0.0085862116145
GC_Content_Range7:0-30 0.00052884747
GC_Content_Range7:30-40 2.481e-12165166
GC_Content_Range7:50-60 1.097e-1266107
GC_Content_Range7:60-70 0.0027782105134
Genome_Size_Range5:0-2 2.480e-11154155
Genome_Size_Range5:2-4 1.140e-9191197
Genome_Size_Range5:4-6 8.171e-12130184
Genome_Size_Range5:6-10 1.295e-82547
Genome_Size_Range9:1-2 5.229e-9127128
Genome_Size_Range9:2-3 2.510e-6117120
Genome_Size_Range9:3-4 0.00152907477
Genome_Size_Range9:4-5 1.199e-66696
Genome_Size_Range9:5-6 0.00022766488
Genome_Size_Range9:6-8 5.150e-91838
Gram_Stain:Gram_Neg 1.090e-15255333
Gram_Stain:Gram_Pos 1.943e-12150150
Habitat:Aquatic 0.00003788991
Habitat:Multiple 0.0002899139178
Motility:No 6.197e-7146151
Motility:Yes 1.118e-6209267
Optimal_temp.:28-30 0.008686737
Oxygen_Req:Anaerobic 6.209e-7101102
Oxygen_Req:Facultative 1.018e-8149201
Pathogenic_in:Animal 0.00151634866
Pathogenic_in:Human 3.815e-6164213
Pathogenic_in:No 1.278e-9217226
Pathogenic_in:Plant 0.0096989915
Pathogenic_in:Rodent 0.008686737
Shape:Coccus 0.00001928182
Shape:Rod 1.315e-16267347
Shape:Spiral 0.00456943434
Temp._range:Mesophilic 1.691e-6392473
Temp._range:Thermophilic 0.00387863535



Back to top


ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 2
Effective number of orgs (counting one per cluster within 468 clusters): 2

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
BXEN266265 ncbi Burkholderia xenovorans LB400 0.0003144113210
PSP56811 Psychrobacter sp. 0.0048886148810


Names of the homologs of the genes in the group in each of these orgs
  G7638   G6795   G6794   G6482   G6481   G6292   G6291   EG11973   EG10311   EG10310   
BXEN266265 BXE_B2971BXE_B2970BXE_C1150BXE_C1151BXE_B2971BXE_B2970BXE_B2971BXE_B2971BXE_B2970BXE_B2971
PSP56811 PSYCPRWF_1818PSYCPRWF_1817PSYCPRWF_1819PSYCPRWF_1817PSYCPRWF_1818PSYCPRWF_1817PSYCPRWF_1818PSYCPRWF_1818PSYCPRWF_1817PSYCPRWF_1818


Organism features enriched in list (features available for 1 out of the 2 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Opportunistic_infections 0.008576315
Pathogenic_in:Plants 0.001715311



Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-981 (taurine degradation IV)106610.5945
GALACTITOLCAT-PWY (galactitol degradation)73490.5815
AST-PWY (arginine degradation II (AST pathway))120630.5683
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112600.5596
PWY0-1182 (trehalose degradation II (trehalase))70430.5079
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176710.5044
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45330.4966
ECASYN-PWY (enterobacterial common antigen biosynthesis)191720.4825
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50340.4791
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96490.4782
GLUCARDEG-PWY (D-glucarate degradation I)152630.4753
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218760.4709
PWY-6196 (serine racemization)102490.4565
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156620.4544
GLYCOCAT-PWY (glycogen degradation I)246790.4528
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212720.4419
ANAPHENOXI-PWY (phenylalanine degradation II (anaerobic))38270.4364
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31240.4349
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195680.4334
PWY-46 (putrescine biosynthesis III)138560.4326
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91440.4305
SORBDEG-PWY (sorbitol degradation II)53320.4259
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37260.4245
PYRUVOX-PWY (pyruvate oxidation pathway)70370.4177
PHESYN (phenylalanine biosynthesis I)110480.4174
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149570.4161
PWY-5148 (acyl-CoA hydrolysis)227720.4156
PWY0-1356 (formate to dimethyl sulfoxide electron transfer)22190.4143
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135530.4060
GLUTDEG-PWY (glutamate degradation II)194650.4046
RHAMCAT-PWY (rhamnose degradation)91420.4036
GLUCONSUPER-PWY (D-gluconate degradation)229710.4023
PWY0-1338 (biosynthesis of 4-amino-4-deoxy-L-arabinose-modified lipid A)21180.4008
PWY0-901 (selenocysteine biosynthesis I (bacteria))230710.4007
FUC-RHAMCAT-PWY (superpathway of fucose and rhamnose degradation)19170.4003



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6795   G6794   G6482   G6481   G6292   G6291   EG11973   EG10311   EG10310   
G76380.9987970.9987850.9991270.9991410.9990230.9992330.9986770.9990110.999222
G67950.9988920.9991640.9990080.9990950.9989450.9985180.9991780.999085
G67940.9987930.9988760.9988530.9988010.9985040.9986580.998999
G64820.9987370.9993330.9990840.9985330.9993060.999084
G64810.9989660.9993040.998950.9988450.999328
G62920.9991780.9989470.9993080.999075
G62910.9989680.9991570.999354
EG119730.9987870.998784
EG103110.999066
EG10310



Back to top


PAIRWISE BLAST SCORES:

  G7638   G6795   G6794   G6482   G6481   G6292   G6291   EG11973   EG10311   EG10310   
G76380.0f0---5.4e-27-5.1e-311.8e-26-1.8e-35
G6795-0.0f0-2.6e-75-1.1e-69--4.6e-117-
G6794--0.0f0-------
G6482-2.0e-77-0.0f0-0--0-
G64815.4e-27---0.0f0-1.1e-377.8e-19-4.9e-42
G6292-1.0e-73-0-0.0f0--0-
G62918.6e-29---2.6e-34-0.0f01.6e-20-2.0e-45
EG119731.8e-26------0.0f0-2.2e-23
EG10311-2.7e-112-0-0--0.0f0-
EG103101.8e-35---4.9e-42-5.5e-502.2e-23-0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G6291 G6292 (centered at G6292)
EG10310 EG10311 (centered at EG10311)
G7638 (centered at G7638)
EG11973 (centered at EG11973)
G6794 G6795 (centered at G6795)
G6481 G6482 (centered at G6482)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7638   G6795   G6794   G6482   G6481   G6292   G6291   EG11973   EG10311   EG10310   
86/62382/62379/62388/62384/62387/62389/62389/62385/62387/623
ABAU360910:0:Tyes1880301880188188187188
ABOR393595:0:Tyes01-1-1001-
AHYD196024:0:Tyes32023233-3
ASAL382245:5:Tyes1030101101
ASP62977:0:Tyes120212125421
BAMB339670:2:Tno01----001-
BAMB339670:3:Tno--0133321333---2
BAMB398577:0:Tno-1-1--190--
BAMB398577:2:Tno0---01--10
BAMB398577:3:Tno--0-------
BBRO257310:0:Tyes10-0101101
BCEN331271:2:Tno2-01212212
BCEN331272:3:Tyes2-01212212
BMAL243160:1:Tno01-1010010
BMAL320388:1:Tno--31010010
BMAL320389:1:Tyes----0-00-0
BPAR257311:0:Tno10-0101101
BPER257313:0:Tyes01-1010010
BPET94624:0:Tyes1406720440204402440204402
BPSE272560:0:Tyes-------0--
BPSE272560:1:Tyes1202121-21
BPSE320372:0:Tno-------0--
BPSE320372:1:Tno1020101-01
BPSE320373:0:Tno-------0--
BPSE320373:1:Tno1020101-01
BSP36773:2:Tyes2-012122-2
BTHA271848:0:Tno1202121121
BVIE269482:6:Tyes0-210100-0
BXEN266265:0:Tyes--01------
BXEN266265:1:Tyes01--010010
CVIO243365:0:Tyes1202121121
ECAR218491:0:Tyes0-21-1001-
ECOL199310:0:Tno5121170817075122512151225121051225121
ECOL316407:0:Tno29971372137141627944162385041624161
ECOL331111:6:Tno3335456814808668658664090866409
ECOL362663:0:Tno447713401339447814444784477044784477
ECOL364106:1:Tno4836483748384837483648374836048374836
ECOL405955:2:Tyes4288133413331334428813344288013344288
ECOL409438:6:Tyes33511483148245548844554424045544553
ECOL413997:0:Tno28881331133040848174084347040844083
ECOL439855:4:Tno452414621463146219721462411014624524
ECOL469008:0:Tno1311015380204931102514287431103111
ECOL481805:0:Tno0159715982545210125452546297425452546
ECOL585034:0:Tno31191367136643158404315389043154314
ECOL585035:0:Tno4602460346044603460246034602046034602
ECOL585055:0:Tno33901498149738198464012405014981499
ECOL585056:2:Tno476816291628162947681629433016294768
ECOL585057:0:Tno464946504651351206335135003514649
ECOL585397:0:Tno3966145039673965489538394895048964895
ECOL83334:0:Tno39682006200590490290445809045267
ECOLI:0:Tno306413941393806805394393042564255
ECOO157:0:Tno398018561857455100545545404555246
EFER585054:1:Tyes3221322032193220322132203221032203221
ESP42895:1:Tyes23849989169989189989180998918
HDUC233412:0:Tyes32023-3323
KPNE272620:2:Tyes03253261475324325324306325324
PAER208963:0:Tyes20993267-2101013268021013268
PAER208964:0:Tno11451143-1143312031190312011430
PFLU205922:0:Tyes01-1010010
PFLU216595:1:Tyes4984974994974984974980497498
PFLU220664:0:Tyes2431243202432243122431124322431
PLUM243265:0:Fyes170217011703294170229429004991702
PPUT160488:0:Tno10-0101101
PPUT351746:0:Tyes092-9201082920
PPUT76869:0:Tno9101919919
PSP56811:2:Tyes1020101101
PSYR205918:0:Tyes091491319151091510
PSYR223283:2:Tyes091291191249120913912913
REUT264198:3:Tyes1202121121
REUT381666:1:Tyes1020101101
RMET266264:1:Tyes70620705-705-12-
RMET266264:2:Tyes----0-0--0
SBOY300268:1:Tyes4011293940122939401129394011029394011
SDYS300267:1:Tyes-62763162721631922021634033632
SENT209261:0:Tno218321823218202182218316421822183
SENT220341:0:Tno50850935090509508164509508
SENT295319:0:Tno206812070206704204206815820672068
SENT321314:2:Tno36085713609571057103685710
SENT454169:2:Tno3793141660166608177166608
SFLE198214:0:Tyes260447436154743618474026044743618
SFLE373384:0:Tno2104309130901013092210413092
SHIGELLA:0:Tno254348435274843530484025434843530
SONE211586:1:Tyes--0-------
SPRO399741:1:Tyes18420479184314814804804811
SSON300269:1:Tyes75529847582984755298475502984755
STYP99287:1:Tyes3591145230523522315523522
XFAS160492:2:Tno1020-01101
XFAS183190:1:Tyes1020-01101
XFAS405440:0:Tno1020-01101
YENT393305:1:Tyes33633503353363353361831335336
YPES187410:5:Tno29810298417817747757747747752981
YPES214092:2:Tno-0--------
YPES214092:3:Tno2641-264203833843833833842641
YPES349746:2:Tno2569025720109910981099109910982569
YPES360102:2:Tyes-0--------
YPES360102:3:Tyes3154-315808038028038038023154
YPES377628:1:Tno-0--------
YPES377628:2:Tno1801-1804762101101801
YPES386656:1:Tno-0--------
YPES386656:2:Tno2066-2069650101102066
YPSE273123:2:Tno2551025530103710361037103710362551
YPSE349747:2:Tno24019902403990010012401



Back to top