CANDIDATE ID: 141

CANDIDATE ID: 141

NUMBER OF GENES: 10
AVERAGE SCORE:    9.9942891e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7510 (ygfY) (b2897)
   Products of gene:
     - G7510-MONOMER (conserved protein)

- G7348 (rseB) (b2571)
   Products of gene:
     - G7348-MONOMER (rseB)
     - CPLX0-7648 (anti-sigma factor)

- EG12341 (rseA) (b2572)
   Products of gene:
     - EG12341-MONOMER (anti-sigma factor)

- EG11897 (rpoE) (b2573)
   Products of gene:
     - RPOE-MONOMER (RNA polymerase, sigma 24 (sigma E) factor)
     - RNAPE-CPLX (RNA polymerase sigma 24)

- EG10857 (rnc) (b2567)
   Products of gene:
     - EG10857-MONOMER (RNase III)
     - CPLX0-3281 (RNase III)
       Reactions:
        RNase III mRNA processing substrate  ->  RNase III processing product mRNA + 2 a single-stranded RNA

- EG10832 (recO) (b2565)
   Products of gene:
     - EG10832-MONOMER (protein interacts with RecR and possibly RecF proteins)
     - RECFOR-CPLX (RecFOR complex)
       Reactions:
        an unstable RecA filament-DNA complex  =  a stabilized RecA filament-DNA complex

- EG10631 (nadB) (b2574)
   Products of gene:
     - L-ASPARTATE-OXID-MONOMER (L-aspartate oxidase)
       Reactions:
        L-aspartate + fumarate  ->  alpha-iminosuccinate + succinate + H+
        L-aspartate + oxygen  ->  hydrogen peroxide + alpha-iminosuccinate + H+
         In pathways
         PWY0-781 (aspartate superpathway)
         PYRIDNUCSYN-PWY (NAD biosynthesis I (from aspartate))

- EG10530 (lepB) (b2568)
   Products of gene:
     - EG10530-MONOMER (leader peptidase (signal peptidase I))
       Reactions:
        a peptide with a leader sequence  ->  a peptide + a leader sequence

- EG10529 (lepA) (b2569)
   Products of gene:
     - EG10529-MONOMER (elongation factor 4)

- EG10270 (era) (b2566)
   Products of gene:
     - EG10270-MONOMER (GTP-binding protein)



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 124
Effective number of orgs (counting one per cluster within 468 clusters): 78

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175810
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295310
YPES386656 ncbi Yersinia pestis Pestoides F10
YPES377628 ncbi Yersinia pestis Nepal51610
YPES360102 ncbi Yersinia pestis Antiqua10
YPES349746 ncbi Yersinia pestis Angola10
YPES214092 ncbi Yersinia pestis CO9210
YPES187410 ncbi Yersinia pestis KIM 1010
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808110
VVUL216895 ncbi Vibrio vulnificus CMCP610
VVUL196600 ncbi Vibrio vulnificus YJ01610
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 221063310
VFIS312309 ncbi Vibrio fischeri ES11410
VCHO345073 ncbi Vibrio cholerae O39510
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696110
TTUR377629 ncbi Teredinibacter turnerae T79019
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252599
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT210
SSP94122 ncbi Shewanella sp. ANA-310
SSON300269 ncbi Shigella sonnei Ss0469
SSED425104 ncbi Shewanella sediminis HAW-EB310
SPRO399741 ncbi Serratia proteamaculans 56810
SPEA398579 ncbi Shewanella pealeana ATCC 70034510
SONE211586 ncbi Shewanella oneidensis MR-110
SLOI323850 ncbi Shewanella loihica PV-410
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SHAL458817 ncbi Shewanella halifaxensis HAW-EB410
SGLO343509 ncbi Sodalis glossinidius morsitans10
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47610
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915010
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1810
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty210
SDYS300267 ncbi Shigella dysenteriae Sd19710
SDEN318161 ncbi Shewanella denitrificans OS21710
SDEG203122 ncbi Saccharophagus degradans 2-4010
SBOY300268 ncbi Shigella boydii Sb2279
SBAL402882 ncbi Shewanella baltica OS18510
SBAL399599 ncbi Shewanella baltica OS19510
RSOL267608 ncbi Ralstonia solanacearum GMI10009
RMET266264 ncbi Ralstonia metallidurans CH349
REUT381666 ncbi Ralstonia eutropha H169
REUT264198 ncbi Ralstonia eutropha JMP1349
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC300010
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a10
PSTU379731 ncbi Pseudomonas stutzeri A15019
PPUT76869 ncbi Pseudomonas putida GB-19
PPUT351746 ncbi Pseudomonas putida F19
PPUT160488 ncbi Pseudomonas putida KT24409
PPRO298386 ncbi Photobacterium profundum SS910
PMUL272843 ncbi Pasteurella multocida multocida Pm7010
PMEN399739 ncbi Pseudomonas mendocina ymp9
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO110
PING357804 ncbi Psychromonas ingrahamii 3710
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC12510
PFLU220664 ncbi Pseudomonas fluorescens Pf-510
PFLU216595 ncbi Pseudomonas fluorescens SBW2510
PFLU205922 ncbi Pseudomonas fluorescens Pf0-110
PENT384676 ncbi Pseudomonas entomophila L489
PATL342610 ncbi Pseudoalteromonas atlantica T6c10
PAER208964 ncbi Pseudomonas aeruginosa PAO110
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA1410
NOCE323261 ncbi Nitrosococcus oceani ATCC 1970710
NMUL323848 ncbi Nitrosospira multiformis ATCC 251969
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E9
MSP400668 ncbi Marinomonas sp. MWYL19
MFLA265072 ncbi Methylobacillus flagellatus KT9
MCAP243233 ncbi Methylococcus capsulatus Bath9
MAQU351348 ncbi Marinobacter aquaeolei VT89
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857810
JSP375286 ncbi Janthinobacterium sp. Marseille9
ILOI283942 ncbi Idiomarina loihiensis L2TR10
HSOM228400 ncbi Haemophilus somnus 23369
HSOM205914 ncbi Haemophilus somnus 129PT9
HINF71421 ncbi Haemophilus influenzae Rd KW209
HINF281310 ncbi Haemophilus influenzae 86-028NP9
HHAL349124 ncbi Halorhodospira halophila SL19
HCHE349521 ncbi Hahella chejuensis KCTC 239610
HARS204773 ncbi Herminiimonas arsenicoxydans9
ESP42895 Enterobacter sp.10
EFER585054 ncbi Escherichia fergusonii ATCC 3546910
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H710
ECOL585397 ncbi Escherichia coli ED1a10
ECOL585057 ncbi Escherichia coli IAI3910
ECOL585056 ncbi Escherichia coli UMN0269
ECOL585055 ncbi Escherichia coli 5598910
ECOL585035 ncbi Escherichia coli S8810
ECOL585034 ncbi Escherichia coli IAI110
ECOL481805 ncbi Escherichia coli ATCC 873910
ECOL469008 ncbi Escherichia coli BL21(DE3)10
ECOL439855 ncbi Escherichia coli SMS-3-510
ECOL413997 ncbi Escherichia coli B str. REL60610
ECOL409438 ncbi Escherichia coli SE1110
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8910
ECOL362663 ncbi Escherichia coli 53610
ECOL331111 ncbi Escherichia coli E24377A10
ECOL316407 ncbi Escherichia coli K-12 substr. W311010
ECOL199310 ncbi Escherichia coli CFT07310
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104310
CVIO243365 ncbi Chromobacterium violaceum ATCC 124729
CSAL290398 ncbi Chromohalobacter salexigens DSM 30439
CPSY167879 ncbi Colwellia psychrerythraea 34H10
CJAP155077 Cellvibrio japonicus10
BVIE269482 ncbi Burkholderia vietnamiensis G49
BTHA271848 ncbi Burkholderia thailandensis E2649
BPSE320372 ncbi Burkholderia pseudomallei 1710b9
BPSE272560 ncbi Burkholderia pseudomallei K962439
BMAL320389 ncbi Burkholderia mallei NCTC 102479
BMAL320388 ncbi Burkholderia mallei SAVP19
BMAL243160 ncbi Burkholderia mallei ATCC 233449
BAMB398577 ncbi Burkholderia ambifaria MC40-69
BAMB339670 ncbi Burkholderia ambifaria AMMD9
ASP76114 ncbi Aromatoleum aromaticum EbN110
ASP62928 ncbi Azoarcus sp. BH7210
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44910
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL039
APLE416269 ncbi Actinobacillus pleuropneumoniae L209
AHYD196024 Aeromonas hydrophila dhakensis10
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-19
ABOR393595 ncbi Alcanivorax borkumensis SK29


Names of the homologs of the genes in the group in each of these orgs
  G7510   G7348   EG12341   EG11897   EG10857   EG10832   EG10631   EG10530   EG10529   EG10270   
YPSE349747 YPSIP31758_0873YPSIP31758_1131YPSIP31758_1130YPSIP31758_1129YPSIP31758_1136YPSIP31758_1138YPSIP31758_1128YPSIP31758_1135YPSIP31758_1134YPSIP31758_1137
YPSE273123 YPTB3173YPTB2895YPTB2896YPTB2897YPTB2890YPTB2888YPTB2898YPTB2891YPTB2892YPTB2889
YPES386656 YPDSF_0618YPDSF_1558YPDSF_1559YPDSF_1560YPDSF_1553YPDSF_1551YPDSF_1561YPDSF_1554YPDSF_1555YPDSF_1552
YPES377628 YPN_3097YPN_1201YPN_1200YPN_1199YPN_1206YPN_1208YPN_1198YPN_1205YPN_1204YPN_1207
YPES360102 YPA_0371YPA_2447YPA_2446YPA_2445YPA_2452YPA_2454YPA_2444YPA_2451YPA_2450YPA_2453
YPES349746 YPANGOLA_A3841YPANGOLA_A3606YPANGOLA_A3605YPANGOLA_A3604YPANGOLA_A3611YPANGOLA_A3613YPANGOLA_A3603YPANGOLA_A3610YPANGOLA_A3609YPANGOLA_A3612
YPES214092 YPO0897YPO2713YPO2712YPO2711YPO2718YPO2720YPO2710YPO2717YPO2716YPO2719
YPES187410 Y3282Y1292Y1291Y1290Y1297Y1299Y1289Y1296Y1295Y1298
YENT393305 YE3386YE1012YE1011YE1010YE1017YE1019YE1009YE1016YE1015YE1018
VVUL216895 VV1_1557VV1_1561VV1_1560VV1_1559VV1_1565VV1_1567VV1_1558VV1_1564VV1_1563VV1_1566
VVUL196600 VV2841VV2836VV2837VV2838VV2831VV2829VV2839VV2832VV2833VV2830
VPAR223926 VP2582VP2576VP2577VP2578VP2572VP2570VP2580VP2573VP2574VP2571
VFIS312309 VF2096VF2091VF2092VF2093VF2087VF2085VF2094VF2088VF2089VF2086
VCHO345073 VC0395_A2048VC0395_A2043VC0395_A2044VC0395_A2045VC0395_A2039VC0395_A2037VC0395_A2046VC0395_A2040VC0395_A2041VC0395_A2038
VCHO VC2471VC2465VC2466VC2467VC2461VC2459VC2469VC2462VC2463VC2460
TTUR377629 TERTU_1177TERTU_1182TERTU_1180TERTU_1188TERTU_1190TERTU_1178TERTU_1186TERTU_1185TERTU_1189
TDEN292415 TBD_1186TBD_2093TBD_2095TBD_2086TBD_2084TBD_2096TBD_2088TBD_2089TBD_2085
STYP99287 STM3047STM2638STM2639STM2640STM2581STM2579STM2641STM2582STM2583STM2580
SSP94122 SHEWANA3_3035SHEWANA3_3030SHEWANA3_3031SHEWANA3_3032SHEWANA3_3026SHEWANA3_3024SHEWANA3_3033SHEWANA3_3027SHEWANA3_3028SHEWANA3_3025
SSON300269 SSO_3050SSO_2695SSO_2696SSO_2697SSO_2691SSO_2689SSO_2692SSO_2693SSO_2690
SSED425104 SSED_1139SSED_1144SSED_1143SSED_1142SSED_1148SSED_1150SSED_1141SSED_1147SSED_1146SSED_1149
SPRO399741 SPRO_3898SPRO_3674SPRO_3675SPRO_3676SPRO_3669SPRO_3667SPRO_3677SPRO_3670SPRO_3671SPRO_3668
SPEA398579 SPEA_1028SPEA_1033SPEA_1032SPEA_1031SPEA_1037SPEA_1039SPEA_1030SPEA_1036SPEA_1035SPEA_1038
SONE211586 SO_1339SO_1344SO_1343SO_1342SO_1348SO_1350SO_1341SO_1347SO_1346SO_1349
SLOI323850 SHEW_1045SHEW_1050SHEW_1049SHEW_1048SHEW_1054SHEW_1056SHEW_1047SHEW_1053SHEW_1052SHEW_1055
SHIGELLA YGFYRSEBRSEARPOERNCRECOLEPBLEPAERA
SHAL458817 SHAL_1074SHAL_1079SHAL_1078SHAL_1077SHAL_1083SHAL_1085SHAL_1076SHAL_1082SHAL_1081SHAL_1084
SGLO343509 SG1996SG1791SG1792SG1793SG1787SG1785SG1794SG1788SG1789SG1786
SFLE373384 SFV_2945SFV_2634SFV_2635SFV_2636SFV_2630SFV_2628SFV_2631SFV_2632SFV_2629
SFLE198214 AAN44368.1AAN44130.1AAN44131.1AAN44132.1AAN44126.1AAN44124.1AAN44127.1AAN44128.1AAN44125.1
SENT454169 SEHA_C3279SEHA_C2852SEHA_C2853SEHA_C2854SEHA_C2847SEHA_C2845SEHA_C2856SEHA_C2849SEHA_C2850SEHA_C2846
SENT321314 SCH_2987SCH_2643SCH_2644SCH_2645SCH_2576SCH_2574SCH_2646SCH_2577SCH_2578SCH_2575
SENT295319 SPA2915SPA0280SPA0279SPA0278SPA0284SPA0286SPA0277SPA0283SPA0282SPA0285
SENT220341 STY3203STY2831STY2832STY2833STY2827STY2825STY2834STY2828STY2829STY2826
SENT209261 T2965T0272T0271T0270T0277T0278T0269T0275T0274T0276
SDYS300267 SDY_3185SDY_2812SDY_2813SDY_2814SDY_2808SDY_2806SDY_2815SDY_2809SDY_2810SDY_2807
SDEN318161 SDEN_2775SDEN_2770SDEN_2771SDEN_2772SDEN_2766SDEN_2764SDEN_2773SDEN_2767SDEN_2768SDEN_2765
SDEG203122 SDE_2254SDE_2249SDE_2250SDE_2251SDE_2243SDE_2241SDE_2252SDE_2245SDE_2246SDE_2242
SBOY300268 SBO_3095SBO_2599SBO_2600SBO_2601SBO_2595SBO_2593SBO_2596SBO_2597SBO_2594
SBAL402882 SHEW185_1236SHEW185_1241SHEW185_1240SHEW185_1239SHEW185_1245SHEW185_1247SHEW185_1238SHEW185_1244SHEW185_1243SHEW185_1246
SBAL399599 SBAL195_1269SBAL195_1274SBAL195_1273SBAL195_1272SBAL195_1278SBAL195_1280SBAL195_1271SBAL195_1277SBAL195_1276SBAL195_1279
RSOL267608 RSC1992RSC1057RSC1055RSC1063RSC1065RSC2447RSC1061RSC1060RSC1064
RMET266264 RMET_2482RMET_2423RMET_2425RMET_2418RMET_2416RMET_2872RMET_2420RMET_2421RMET_2417
REUT381666 H16_A2628H16_A2561H16_A2563H16_A2555H16_A2553H16_A3036H16_A2557H16_A2558H16_A2554
REUT264198 REUT_A2321REUT_A2257REUT_A2259REUT_A2252REUT_A2250REUT_A2735REUT_A2254REUT_A2255REUT_A2251
PSYR223283 PSPTO_4227PSPTO_4222PSPTO_4223PSPTO_4224PSPTO_4217PSPTO_4215PSPTO_4225PSPTO_4219PSPTO_4220PSPTO_4216
PSYR205918 PSYR_3961PSYR_3956PSYR_3957PSYR_3958PSYR_3951PSYR_3949PSYR_3959PSYR_3953PSYR_3954PSYR_3950
PSTU379731 PST_1220PST_1225PST_1223PST_1231PST_1233PST_1222PST_1229PST_1228PST_1232
PPUT76869 PPUTGB1_4387PPUTGB1_4378PPUTGB1_4380PPUTGB1_4374PPUTGB1_4372PPUTGB1_4381PPUTGB1_4375PPUTGB1_4376PPUTGB1_4373
PPUT351746 PPUT_4297PPUT_4292PPUT_4294PPUT_4288PPUT_4286PPUT_4295PPUT_4289PPUT_4290PPUT_4287
PPUT160488 PP_1424PP_1429PP_1427PP_1433PP_1435PP_1426PP_1432PP_1431PP_1434
PPRO298386 PBPRA3099PBPRA3093PBPRA3094PBPRA3095PBPRA3089PBPRA3087PBPRA3097PBPRA3090PBPRA3091PBPRA3088
PMUL272843 PM1790PM1787PM1788PM1789PM0061PM1867PM0201PM0062PM0063PM0060
PMEN399739 PMEN_1464PMEN_1469PMEN_1467PMEN_1475PMEN_1477PMEN_1466PMEN_1473PMEN_1472PMEN_1476
PLUM243265 PLU3555PLU3344PLU3345PLU3346PLU3340PLU3338PLU3347PLU3341PLU3342PLU3339
PING357804 PING_0063PING_0067PING_0066PING_0065PING_0640PING_0642PING_0064PING_0639PING_0638PING_0641
PHAL326442 PSHAA0723PSHAA0728PSHAA0727PSHAA0726PSHAA0732PSHAA0734PSHAA0725PSHAA0731PSHAA0730PSHAA0733
PFLU220664 PFL_1445PFL_1450PFL_1449PFL_1448PFL_1071PFL_1073PFL_1447PFL_1070PFL_1069PFL_1072
PFLU216595 PFLU1455PFLU1469PFLU1468PFLU1467PFLU1060PFLU1062PFLU1465PFLU1059PFLU1058PFLU1061
PFLU205922 PFL_1358PFL_1364PFL_1363PFL_1362PFL_0994PFL_0996PFL_1360PFL_0993PFL_0992PFL_0995
PENT384676 PSEEN4299PSEEN4294PSEEN4296PSEEN4290PSEEN4288PSEEN4297PSEEN4291PSEEN4292PSEEN4289
PATL342610 PATL_3159PATL_3153PATL_3154PATL_3155PATL_3149PATL_3710PATL_3156PATL_3150PATL_3151PATL_3148
PAER208964 PA0760PA0764PA0763PA0762PA0770PA0772PA0761PA0768PA0767PA0771
PAER208963 PA14_54470PA14_54410PA14_54420PA14_54430PA14_54330PA14_54300PA14_54450PA14_54350PA14_54370PA14_54320
NOCE323261 NOC_2469NOC_2464NOC_2465NOC_2466NOC_2458NOC_0794NOC_2467NOC_2460NOC_2461NOC_2457
NMUL323848 NMUL_A0859NMUL_A1748NMUL_A1746NMUL_A1753NMUL_A1757NMUL_A1743NMUL_A1752NMUL_A1751NMUL_A1754
MSUC221988 MS2227MS2230MS2229MS2228MS0368MS0239MS0370MS0371MS0367
MSP400668 MMWYL1_1095MMWYL1_1100MMWYL1_1098MMWYL1_1246MMWYL1_1248MMWYL1_1097MMWYL1_1245MMWYL1_1244MMWYL1_1247
MFLA265072 MFLA_1002MFLA_1001MFLA_1000MFLA_1007MFLA_1010MFLA_0999MFLA_1005MFLA_1004MFLA_1008
MCAP243233 MCA_1541MCA_1469MCA_1471MCA_1463MCA_1461MCA_1472MCA_1465MCA_1466MCA_1462
MAQU351348 MAQU_2265MAQU_2261MAQU_2263MAQU_2245MAQU_2243MAQU_2264MAQU_2247MAQU_2248MAQU_2244
KPNE272620 GKPORF_B2681GKPORF_B2227GKPORF_B2228GKPORF_B2229GKPORF_B2223GKPORF_B2221GKPORF_B2232GKPORF_B2224GKPORF_B2225GKPORF_B2222
JSP375286 MMA_1510MMA_1364MMA_1362MMA_1370MMA_1372MMA_1997MMA_1368MMA_1367MMA_1371
ILOI283942 IL0819IL0814IL0815IL0816IL0810IL0808IL0817IL0811IL0812IL0809
HSOM228400 HSM_0407HSM_0404HSM_0405HSM_0406HSM_0838HSM_1984HSM_0837HSM_0836HSM_0839
HSOM205914 HS_1604HS_1607HS_1606HS_1605HS_1240HS_0093HS_1241HS_1242HS_1239
HINF71421 HI_0627HI_0630HI_0629HI_0628HI_0014HI_0332HI_0015HI_0016HI_0013
HINF281310 NTHI0720NTHI0716NTHI0718NTHI0719NTHI0019NTHI0450NTHI0020NTHI0021NTHI0018
HHAL349124 HHAL_0042HHAL_0038HHAL_0040HHAL_0034HHAL_0032HHAL_0041HHAL_0035HHAL_0036HHAL_0033
HCHE349521 HCH_01788HCH_01792HCH_01791HCH_01790HCH_01800HCH_01803HCH_01789HCH_01798HCH_01797HCH_01801
HARS204773 HEAR1774HEAR2069HEAR2071HEAR2063HEAR2061HEAR1385HEAR2065HEAR2066HEAR2062
ESP42895 ENT638_3315ENT638_3058ENT638_3059ENT638_3060ENT638_3054ENT638_3052ENT638_3061ENT638_3055ENT638_3056ENT638_3053
EFER585054 EFER_2832EFER_0503EFER_0502EFER_0501EFER_0507EFER_0509EFER_0499EFER_0506EFER_0505EFER_0508
ECOO157 YGFYRSEBRSEARPOERNCRECONADBLEPBLEPAERA
ECOL83334 ECS3769ECS3437ECS3438ECS3439ECS3433ECS3431ECS3440ECS3434ECS3435ECS3432
ECOL585397 ECED1_3356ECED1_3001ECED1_3002ECED1_3003ECED1_2996ECED1_2994ECED1_3005ECED1_2998ECED1_2999ECED1_2995
ECOL585057 ECIAI39_3313ECIAI39_2776ECIAI39_2777ECIAI39_2778ECIAI39_2772ECIAI39_2770ECIAI39_2779ECIAI39_2773ECIAI39_2774ECIAI39_2771
ECOL585056 ECUMN_3239ECUMN_2893ECUMN_2894ECUMN_2895ECUMN_2888ECUMN_2886ECUMN_2890ECUMN_2891ECUMN_2887
ECOL585055 EC55989_3183EC55989_2860EC55989_2861EC55989_2862EC55989_2855EC55989_2853EC55989_2863EC55989_2857EC55989_2858EC55989_2854
ECOL585035 ECS88_3177ECS88_2745ECS88_2746ECS88_2747ECS88_2740ECS88_2738ECS88_2748ECS88_2742ECS88_2743ECS88_2739
ECOL585034 ECIAI1_3016ECIAI1_2684ECIAI1_2685ECIAI1_2686ECIAI1_2678ECIAI1_2676ECIAI1_2688ECIAI1_2680ECIAI1_2681ECIAI1_2677
ECOL481805 ECOLC_0812ECOLC_1106ECOLC_1105ECOLC_1104ECOLC_1110ECOLC_1112ECOLC_1103ECOLC_1109ECOLC_1108ECOLC_1111
ECOL469008 ECBD_0840ECBD_1110ECBD_1109ECBD_1108ECBD_1114ECBD_1116ECBD_1106ECBD_1113ECBD_1112ECBD_1115
ECOL439855 ECSMS35_3030ECSMS35_2724ECSMS35_2725ECSMS35_2726ECSMS35_2720ECSMS35_2718ECSMS35_2728ECSMS35_2721ECSMS35_2722ECSMS35_2719
ECOL413997 ECB_02729ECB_02465ECB_02466ECB_02467ECB_02461ECB_02459ECB_02468ECB_02462ECB_02463ECB_02460
ECOL409438 ECSE_3160ECSE_2859ECSE_2860ECSE_2861ECSE_2855ECSE_2853ECSE_2862ECSE_2856ECSE_2857ECSE_2854
ECOL405955 APECO1_3630APECO1_3960APECO1_3959APECO1_3958APECO1_3964APECO1_3966APECO1_3957APECO1_3963APECO1_3962APECO1_3965
ECOL364106 UTI89_C3282UTI89_C2893UTI89_C2894UTI89_C2895UTI89_C2888UTI89_C2886UTI89_C2896UTI89_C2890UTI89_C2891UTI89_C2887
ECOL362663 ECP_2890ECP_2573ECP_2574ECP_2575ECP_2569ECP_2567ECP_2576ECP_2570ECP_2571ECP_2568
ECOL331111 ECE24377A_3223ECE24377A_2857ECE24377A_2858ECE24377A_2859ECE24377A_2853ECE24377A_2851ECE24377A_2862ECE24377A_2854ECE24377A_2855ECE24377A_2852
ECOL316407 ECK2892:JW2865:B2897ECK2569:JW2555:B2571ECK2570:JW2556:B2572ECK2571:JW2557:B2573ECK2565:JW2551:B2567ECK2563:JW2549:B2565ECK2572:JW2558:B2574ECK2566:JW2552:B2568ECK2567:JW2553:B2569ECK2564:JW2550:B2566
ECOL199310 C3477C3095C3096C3097C3091C3089C3098C3092C3093C3090
ECAR218491 ECA0759ECA3282ECA3283ECA3284ECA3278ECA3276ECA3285ECA3279ECA3280ECA3277
CVIO243365 CV_2060CV_2059CV_2058CV_2066CV_2069CV_3930CV_2064CV_2063CV_2067
CSAL290398 CSAL_2151CSAL_1627CSAL_1626CSAL_1631CSAL_1633CSAL_1215CSAL_1630CSAL_1629CSAL_1632
CPSY167879 CPS_4131CPS_4127CPS_4128CPS_4129CPS_4122CPS_4120CPS_4130CPS_4123CPS_4124CPS_4121
CJAP155077 CJA_2215CJA_2211CJA_2212CJA_2213CJA_2581CJA_2578CJA_2214CJA_2583CJA_2584CJA_2580
BVIE269482 BCEP1808_4414BCEP1808_1048BCEP1808_1046BCEP1808_1053BCEP1808_1055BCEP1808_2582BCEP1808_1052BCEP1808_1051BCEP1808_1054
BTHA271848 BTH_II0664BTH_I1725BTH_I1723BTH_I1730BTH_I1732BTH_I0778BTH_I1729BTH_I1728BTH_I1731
BPSE320372 BURPS1710B_B0932BURPS1710B_A3147BURPS1710B_A3149BURPS1710B_A3141BURPS1710B_A3139BURPS1710B_A1190BURPS1710B_A3142BURPS1710B_A3143BURPS1710B_A3140
BPSE272560 BPSS1716BPSL2434BPSL2436BPSL2429BPSL2427BPSL0914BPSL2430BPSL2431BPSL2428
BMAL320389 BMA10247_A0503BMA10247_1794BMA10247_1796BMA10247_1789BMA10247_1787BMA10247_2103BMA10247_1790BMA10247_1791BMA10247_1788
BMAL320388 BMASAVP1_1625BMASAVP1_A2471BMASAVP1_A2473BMASAVP1_A2466BMASAVP1_A2464BMASAVP1_A2649BMASAVP1_A2467BMASAVP1_A2468BMASAVP1_A2465
BMAL243160 BMA_A1745BMA_0538BMA_0536BMA_0543BMA_0545BMA_2233BMA_0542BMA_0541BMA_0544
BAMB398577 BAMMC406_3831BAMMC406_1009BAMMC406_1007BAMMC406_1014BAMMC406_1016BAMMC406_2422BAMMC406_1013BAMMC406_1012BAMMC406_1015
BAMB339670 BAMB_3315BAMB_1005BAMB_1003BAMB_1010BAMB_1012BAMB_2551BAMB_1009BAMB_1008BAMB_1011
ASP76114 EBA6688EBA5465EBA5464EBA5463EBA5539EBA5541EBA5461EBA5536EBA5535EBA5540
ASP62928 AZO1553AZO1632AZO1631AZO1630AZO1642AZO1644AZO1629AZO1640AZO1639AZO1643
ASAL382245 ASA_3495ASA_3490ASA_3491ASA_3492ASA_3486ASA_3484ASA_3493ASA_3487ASA_3488ASA_3485
APLE434271 APJL_1547APJL_0416APJL_0415APJL_0536APJL_0538APJL_1556APJL_0535APJL_0534APJL_0537
APLE416269 APL_1521APL_0395APL_0394APL_0543APL_0545APL_1529APL_0542APL_0541APL_0544
AHYD196024 AHA_0791AHA_0796AHA_0795AHA_0794AHA_0800AHA_0802AHA_0793AHA_0799AHA_0798AHA_0801
AEHR187272 MLG_1336MLG_1341MLG_1339MLG_1347MLG_1349MLG_1338MLG_1345MLG_1344MLG_1348
ABOR393595 ABO_1643ABO_1637ABO_1639ABO_1631ABO_1629ABO_1641ABO_1633ABO_1634ABO_1630


Organism features enriched in list (features available for 120 out of the 124 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000508692
Arrangment:Pairs 0.007531632112
Arrangment:Singles 0.009527969286
Disease:Bubonic_plague 0.000068766
Disease:Dysentery 0.000068766
Disease:Gastroenteritis 0.00001511013
Disease:Glanders_and_pneumonia 0.008547633
Disease:Plant_rot 0.008547633
Endospores:No 0.000062926211
GC_Content_Range4:0-40 4.387e-196213
GC_Content_Range4:40-60 6.362e-1482224
GC_Content_Range7:30-40 9.279e-136166
GC_Content_Range7:40-50 0.002464735117
GC_Content_Range7:50-60 5.141e-1047107
Genome_Size_Range5:0-2 6.842e-162155
Genome_Size_Range5:2-4 1.915e-718197
Genome_Size_Range5:4-6 2.507e-1980184
Genome_Size_Range5:6-10 0.00020952047
Genome_Size_Range9:1-2 2.049e-122128
Genome_Size_Range9:2-3 0.000041710120
Genome_Size_Range9:3-4 0.0061030877
Genome_Size_Range9:4-5 4.097e-73996
Genome_Size_Range9:5-6 1.161e-94188
Genome_Size_Range9:6-8 0.00002101938
Gram_Stain:Gram_Neg 1.639e-22112333
Habitat:Multiple 0.003906848178
Motility:No 2.655e-98151
Motility:Yes 5.657e-1288267
Oxygen_Req:Aerobic 0.004239527185
Oxygen_Req:Anaerobic 2.660e-83102
Oxygen_Req:Facultative 3.622e-1680201
Pathogenic_in:Human 0.008419054213
Pathogenic_in:No 0.000167230226
Shape:Coccus 3.852e-7282
Shape:Rod 2.202e-15107347
Shape:Spiral 0.0028905134
Temp._range:Mesophilic 0.0074391106473
Temp._range:Psychrophilic 0.002979169
Temp._range:Thermophilic 0.0023306135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 112
Effective number of orgs (counting one per cluster within 468 clusters): 102

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 71
SSP64471 ncbi Synechococcus sp. CC93111
SSOL273057 ncbi Sulfolobus solfataricus P21
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RBEL336407 ncbi Rickettsia bellii RML369-C1
PTOR263820 ncbi Picrophilus torridus DSM 97901
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LACI272621 ncbi Lactobacillus acidophilus NCFM1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
DRAD243230 ncbi Deinococcus radiodurans R11
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CCAV227941 ncbi Chlamydophila caviae GPIC0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1351
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi1
BBUR224326 ncbi Borrelia burgdorferi B311
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K11
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G7510   G7348   EG12341   EG11897   EG10857   EG10832   EG10631   EG10530   EG10529   EG10270   
UURE95667
UURE95664 UUR10_0331
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TPAL243276 TP_0809
TKOD69014
TDEN243275 TDE_2320
TACI273075
STOK273063 ST1196
SSP64471 GSYN2692
SSOL273057 SSO0997
SMAR399550
SHAE279808 SH1332
SAUR93061 SAOUHSC_01688
SACI330779 SACI_0549
RSAL288705 RSAL33209_1384
RBEL336407 RBE_1182
PTOR263820 PTO0995
PPEN278197 PEPE_1104
PMAR167542 P9515ORF_0116
PMAR167540 PMM0100
PMAR167539 PRO_0119
PISL384616
PHOR70601
PFUR186497
PAST100379 PAM625
PARS340102
PAER178306
PACN267747 PPA1266
PABY272844
NPHA348780 NP2416A
MTHE349307
MTHE187420 MTH1502
MSYN262723
MSTA339860 MSP_0180
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632 MSC_0462
MMOB267748
MMAZ192952
MMAR444158 MMARC6_1397
MMAR426368 MMARC7_0522
MMAR402880 MMARC5_0315
MMAR368407 MEMAR_0221
MMAR267377 MMP1277
MLAB410358 MLAB_0140
MKAN190192 MK0828
MJAN243232 MJ_0033
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_3053
MGEN243273
MFLO265311 MFL266
MCAP340047 MCAP_0507
MBUR259564
MBAR269797
MART243272 MART0536
MAEO419665
MACE188937
LREU557436 LREU_0738
LMES203120 LEUM_0780
LJOH257314 LJ_1322
LHEL405566 LHV_1301
LGAS324831 LGAS_1118
LDEL390333 LDB1251
LDEL321956 LBUL_1169
LBRE387344 LVIS_0751
LACI272621 LBA1201
IHOS453591 IGNI_0276
HWAL362976 HQ3217A
HSP64091 VNG1883G
HSAL478009 OE3646F
HPYL85963 JHP0607
HPYL357544 HPAG1_0647
HMUK485914 HMUK_1496
HMAR272569 RRNAC3409
HBUT415426
DRAD243230 DR_0646
DETH243164 DET_1025
CTRA471473
CTRA471472
CSUL444179
CPRO264201 PC0274
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMUR243161
CMET456442
CMAQ397948 CMAQ_1793
CKOR374847
CFEL264202
CEFF196164 CE1976
CCAV227941
CABO218497
BXEN266265
BTUR314724 BT0705
BLON206672 BL1375
BHER314723
BGAR290434 BG0727
BBUR224326 BB_0705
AYEL322098 AYWB_110
AURANTIMONAS
APER272557 APE0950
AFUL224325


Organism features enriched in list (features available for 107 out of the 112 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0029907892
Arrangment:Pairs 0.006523312112
Arrangment:Singles 0.002380965286
Disease:Pharyngitis 1.033e-688
Disease:bronchitis_and_pneumonitis 1.033e-688
Endospores:No 1.213e-1068211
GC_Content_Range4:0-40 0.000835753213
GC_Content_Range4:60-100 0.000023411145
GC_Content_Range7:0-30 0.00013371947
GC_Content_Range7:60-70 0.000138611134
Genome_Size_Range5:0-2 2.245e-2170155
Genome_Size_Range5:4-6 9.071e-154184
Genome_Size_Range5:6-10 0.0005453147
Genome_Size_Range9:0-1 1.071e-102027
Genome_Size_Range9:1-2 1.066e-1050128
Genome_Size_Range9:3-4 0.0086761777
Genome_Size_Range9:4-5 1.444e-6396
Genome_Size_Range9:5-6 8.162e-8188
Gram_Stain:Gram_Neg 2.313e-1032333
Habitat:Multiple 2.851e-614178
Habitat:Specialized 0.00077401953
Optimal_temp.:- 0.000013028257
Optimal_temp.:100 0.006041033
Optimal_temp.:35-40 0.006041033
Optimal_temp.:42 0.006041033
Optimal_temp.:85 0.001083244
Oxygen_Req:Aerobic 0.000025617185
Oxygen_Req:Anaerobic 3.071e-636102
Pathogenic_in:Human 0.004051328213
Pathogenic_in:No 0.001154655226
Salinity:Extreme_halophilic 0.002743457
Shape:Irregular_coccus 8.947e-121617
Shape:Rod 9.831e-1134347
Shape:Sphere 3.590e-101619
Temp._range:Hyperthermophilic 3.575e-91723
Temp._range:Mesophilic 0.000838875473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 1
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
NOCE323261 ncbi Nitrosococcus oceani ATCC 19707 0.0021656137210


Names of the homologs of the genes in the group in each of these orgs
  G7510   G7348   EG12341   EG11897   EG10857   EG10832   EG10631   EG10530   EG10529   EG10270   
NOCE323261 NOC_2469NOC_2464NOC_2465NOC_2466NOC_2458NOC_0794NOC_2467NOC_2460NOC_2461NOC_2457


Organism features enriched in list (features available for 1 out of the 1 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Shape:Ellipse 0.003430512



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181210.6542
AST-PWY (arginine degradation II (AST pathway))120880.6536
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176990.5712
GLYCOCAT-PWY (glycogen degradation I)2461180.5678
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951040.5651
GALACTITOLCAT-PWY (galactitol degradation)73590.5558
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81620.5484
ECASYN-PWY (enterobacterial common antigen biosynthesis)191990.5317
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50440.5038
PWY-5148 (acyl-CoA hydrolysis)2271050.4997
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251040.4956
GLUCONSUPER-PWY (D-gluconate degradation)2291040.4871
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001200.4851
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491080.4796
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491080.4796
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901170.4778
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911170.4761
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961180.4756
PWY-5918 (heme biosynthesis I)2721120.4690
GLUCARDEG-PWY (D-glucarate degradation I)152800.4656
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91590.4654
PWY-5913 (TCA cycle variation IV)3011170.4593
PWY-1269 (CMP-KDO biosynthesis I)3251210.4532
PWY-5386 (methylglyoxal degradation I)3051170.4527
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861130.4524
PWY-4041 (γ-glutamyl cycle)2791100.4403
PWY-6196 (serine racemization)102600.4313
GLUTDEG-PWY (glutamate degradation II)194880.4288
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391200.4240
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4200
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481210.4188
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149740.4179
PWY-46 (putrescine biosynthesis III)138700.4118
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96560.4108
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94550.4076
PWY0-981 (taurine degradation IV)106590.4055
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183820.4023
PWY0-901 (selenocysteine biosynthesis I (bacteria))230940.4017
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135680.4013



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7348   EG12341   EG11897   EG10857   EG10832   EG10631   EG10530   EG10529   EG10270   
G75100.9992970.9991060.9993620.9987440.998650.999290.9987930.9988080.998823
G73480.9996250.9997730.9996160.9995570.9994830.9996560.999690.999602
EG123410.9996520.9992960.9992040.999450.9993360.9993760.999273
EG118970.9995320.9995430.9994740.9995540.9996040.99952
EG108570.9997880.9989440.9999270.999750.999929
EG108320.9990930.9997370.999720.999885
EG106310.9990440.9991760.999062
EG105300.9998620.999887
EG105290.999808
EG10270



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PAIRWISE BLAST SCORES:

  G7510   G7348   EG12341   EG11897   EG10857   EG10832   EG10631   EG10530   EG10529   EG10270   
G75100.0f0---------
G7348-0.0f0--------
EG12341--0.0f0-------
EG11897---0.0f0------
EG10857----0.0f0-----
EG10832-----0.0f0----
EG10631------0.0f0---
EG10530-------0.0f0--
EG10529--------0.0f0-
EG10270---------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10270 EG10529 EG10530 EG10631 EG10832 EG10857 EG11897 EG12341 G7348 (centered at EG10529)
G7510 (centered at G7510)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7510   G7348   EG12341   EG11897   EG10857   EG10832   EG10631   EG10530   EG10529   EG10270   
162/623140/623101/623287/623414/623219/623364/623368/623416/623406/623
AAEO224324:0:Tyes-------0-741
AAUR290340:2:Tyes---106--0---
AAVE397945:0:Tyes-2-0792604548
ABAC204669:0:Tyes---2468-9592024363803316
ABAU360910:0:Tyes-2-068-547
ABOR393595:0:Tyes148-102012451
ABUT367737:0:Tyes----1132-4421560-
ACAU438753:0:Tyes976--21981771--177001772
ACEL351607:0:Tyes---19311359-0---
ACRY349163:8:Tyes----1-1291010262
ADEH290397:0:Tyes---267936-19691039
AEHR187272:0:Tyes05-3111329812
AFER243159:0:Tyes---8209451
AHYD196024:0:Tyes054391128710
ALAI441768:0:Tyes--------0269
AMAR234826:0:Tyes----263--0--
AMAR329726:9:Tyes---0--36413031646-
AMET293826:0:Tyes---3049268229460-29742948
ANAE240017:0:Tyes---20480-----
AORE350688:0:Tyes---025450--2649
APER272557:0:Tyes------0---
APHA212042:0:Tyes----932-0605--
APLE416269:0:Tyes1148-101481501156147146149
APLE434271:0:Tno1135-101081101144107106109
ASAL382245:5:Tyes11678209341
ASP1667:3:Tyes---93--0---
ASP232721:2:Tyes-7-920220451
ASP62928:0:Tyes0818079919378898892
ASP62977:0:Tyes560---208451
ASP76114:2:Tyes72032144460424145
AVAR240292:3:Tyes---4509--19549404091
AYEL322098:4:Tyes---------0
BABO262698:0:Tno--------0-
BABO262698:1:Tno-------0-3
BAFZ390236:2:Fyes----44----0
BAMB339670:2:Tno0---------
BAMB339670:3:Tno-2-0791590658
BAMB398577:2:Tno0---------
BAMB398577:3:Tno-2-0791439658
BAMY326423:0:Tyes---01349-2264-21532131
BANT260799:0:Tno----0-624-516497
BANT261594:2:Tno----0-647-537517
BANT568206:2:Tyes----0-3967-38523833
BANT592021:2:Tno----0-657-541522
BAPH198804:0:Tyes----1--230
BAPH372461:0:Tyes----0--12-
BBAC264462:0:Tyes---01107-22139997-
BBAC360095:0:Tyes----13-0787-
BBRO257310:0:Tyes-6-820-341
BBUR224326:21:Fno----0-----
BCAN483179:0:Tno--------0-
BCAN483179:1:Tno-------0-3
BCEN331271:2:Tno-2-0791263658
BCEN331272:3:Tyes-2-0791375658
BCER226900:1:Tyes----2649-3217031113091
BCER288681:0:Tno----0-565-456437
BCER315749:1:Tyes----10-6410545526
BCER405917:1:Tyes----0-603-490470
BCER572264:1:Tno----0-582-470451
BCIC186490:0:Tyes----1-312230
BCLA66692:0:Tyes---0208614651329-14371463
BFRA272559:1:Tyes---3414--0125-3786
BFRA295405:0:Tno---3757--0160-4124
BGAR290434:2:Fyes----0-----
BHAL272558:0:Tyes---02270---11191144
BHEN283166:0:Tyes----419421-4180-
BJAP224911:0:Fyes---162533-0253456412532
BLIC279010:0:Tyes---0--2635--2444
BLON206672:0:Tyes------0---
BMAL243160:0:Tno0---------
BMAL243160:1:Tno-2-0791487658
BMAL320388:0:Tno0---------
BMAL320388:1:Tno-7-920179341
BMAL320389:0:Tyes0---------
BMAL320389:1:Tyes-7-920305341
BMEL224914:0:Tno--------0-
BMEL224914:1:Tno-------2-0
BMEL359391:0:Tno--------0-
BMEL359391:1:Tno-------0-3
BOVI236:0:Tyes--------0-
BOVI236:1:Tyes-------0-3
BPAR257311:0:Tno-6-820-341
BPER257313:0:Tyes-6-820-341
BPET94624:0:Tyes-2-0683154547
BPSE272560:0:Tyes0---------
BPSE272560:1:Tyes-1526-1528152115190152215231520
BPSE320372:0:Tno0---------
BPSE320372:1:Tno-1845-1847183918370184018411838
BPSE320373:0:Tno0---------
BPSE320373:1:Tno-1738-1740-17320173417351733
BPUM315750:0:Tyes---01358-2277120321392117
BQUI283165:0:Tyes----327329-3260-
BSP107806:2:Tyes----1--230
BSP36773:2:Tyes-2-0791629658
BSP376:0:Tyes----355635533619355703555
BSUB:0:Tyes---0151424842750-25092486
BSUI204722:0:Tyes--------0-
BSUI204722:1:Tyes-------0-3
BSUI470137:0:Tno--------0-
BSUI470137:1:Tno-------0--
BTHA271848:0:Tno0---------
BTHA271848:1:Tno-928-9269339350932931934
BTHE226186:0:Tyes---1481--0136-661
BTHU281309:1:Tno----0-571-464445
BTHU412694:1:Tno----0-516-416399
BTRI382640:1:Tyes----631633-6300632
BTUR314724:0:Fyes----0-----
BVIE269482:6:Tyes0---------
BVIE269482:7:Tyes-2-0791520658
BWEI315730:4:Tyes---01947-2540193724362417
CACE272562:1:Tyes---1983448--460-0
CAULO:0:Tyes----53954319135380-
CBEI290402:0:Tyes----343--3031020
CBLO203907:0:Tyes----0--12-
CBLO291272:0:Tno----0--12-
CBOT36826:1:Tno----11503-0522504
CBOT441770:0:Tyes----12--0605587
CBOT441771:0:Tno----11--0555537
CBOT441772:1:Tno----0---490472
CBOT498213:1:Tno----0---601583
CBOT508765:1:Tyes----350---019
CBOT515621:2:Tyes----11--0-525
CBOT536232:0:Tno----12--0600582
CBUR227377:1:Tyes740---133913370134013411338
CBUR360115:1:Tno832---139913970140014011398
CBUR434922:2:Tno429---241453103
CCHL340177:0:Tyes---14011172-6680--
CCON360104:2:Tyes----0--263287-
CCUR360105:0:Tyes----1359--0856-
CDES477974:0:Tyes---1968499-051619071891
CDIF272563:1:Tyes----0---12401209
CDIP257309:0:Tyes---0828-----
CEFF196164:0:Fyes----0-----
CFET360106:0:Tyes----549--0287-
CGLU196627:0:Tyes----0221----
CHOM360107:1:Tyes----821--2640-
CHUT269798:0:Tyes---0---1349-1846
CHYD246194:0:Tyes----1009-1903926020
CJAP155077:0:Tyes40123693673371372368
CJEI306537:0:Tyes---4340-----
CJEJ192222:0:Tyes----765--0173-
CJEJ195099:0:Tno----832--0220-
CJEJ354242:2:Tyes----731--0169-
CJEJ360109:0:Tyes----1162--2410-
CJEJ407148:0:Tno----752--0175-
CKLU431943:1:Tyes------0647-165
CMAQ397948:0:Tyes------0---
CMIC31964:2:Tyes---12710-----
CMIC443906:2:Tyes---039-----
CNOV386415:0:Tyes----8701129-011481130
CPEL335992:0:Tyes-------6130-
CPER195102:1:Tyes-----1425-014491426
CPER195103:0:Tno-----1665-016891666
CPER289380:3:Tyes-----0--241
CPHY357809:0:Tyes----1777--220916480
CPRO264201:0:Fyes----0-----
CPSY167879:0:Tyes117892010341
CRUT413404:0:Tyes----7-3301506
CSAL290398:0:Tyes963-4254244294310428427430
CSP501479:6:Fyes----169-0168-172
CSP78:2:Tyes---1140563-31635620-
CTEP194439:0:Tyes---851535-0875--
CTET212717:0:Tyes----0--9727711
CVES412965:0:Tyes----7-2961406
CVIO243365:0:Tyes-2108111918659
DARO159087:0:Tyes838--18100659
DDES207559:0:Tyes----0-126112811291920
DETH243164:0:Tyes----0-----
DGEO319795:1:Tyes---1104--0---
DHAF138119:0:Tyes---42572485-0242029702938
DNOD246195:0:Tyes0---168--169170167
DOLE96561:0:Tyes----1000-9880-613
DPSY177439:2:Tyes----1172-6160-1628
DRAD243230:3:Tyes---------0
DRED349161:0:Tyes---2140192123340-23602338
DSHI398580:5:Tyes----1--0-2
DSP216389:0:Tyes----0-285---
DSP255470:0:Tno----0-282---
DVUL882:1:Tyes----1382-17506486470
ECAN269484:0:Tyes----488--0--
ECAR218491:0:Tyes0253925402541253525332542253625372534
ECHA205920:0:Tyes----703-0359--
ECOL199310:0:Tno382678209341
ECOL316407:0:Tno322678209341
ECOL331111:6:Tno3506782010341
ECOL362663:0:Tno328678209341
ECOL364106:1:Tno3937892010451
ECOL405955:2:Tyes353678209341
ECOL409438:6:Tyes320678209341
ECOL413997:0:Tno282678209341
ECOL439855:4:Tno296678209341
ECOL469008:0:Tno0281280279285287277284283286
ECOL481805:0:Tno0305304303309311302308307310
ECOL585034:0:Tno32089102011451
ECOL585035:0:Tno425678209341
ECOL585055:0:Tno321678209341
ECOL585056:2:Tno35667820-341
ECOL585057:0:Tno5687892010451
ECOL585397:0:Tno362678209341
ECOL83334:0:Tno354678209341
ECOLI:0:Tno331678209341
ECOO157:0:Tno3607892010451
EFAE226185:3:Tyes----70251--052
EFER585054:1:Tyes2322321790658
ELIT314225:0:Tyes------138524950
ERUM254945:0:Tyes----486--0--
ERUM302409:0:Tno----481--0--
ESP42895:1:Tyes272678209341
FALN326424:0:Tyes---1920-842---
FJOH376686:0:Tyes---935--38760-1696
FMAG334413:1:Tyes----112----0
FNOD381764:0:Tyes---50433----0
FNUC190304:0:Tyes----0---625-
FPHI484022:1:Tyes1946---12331469188812327210
FRANT:0:Tno0---3906531039149712
FSP106370:0:Tyes---2486231703105---
FSP1855:0:Tyes---762-19120---
FSUC59374:0:Tyes----2461263102060--
FTUL351581:0:Tno656---44159311574400645
FTUL393011:0:Tno614---40855010584070601
FTUL393115:0:Tyes0---3746429637548112
FTUL401614:0:Tyes1016---13441127582134501029
FTUL418136:0:Tno705---131124301305717
FTUL458234:0:Tno652---43558710994340640
GBET391165:0:Tyes-------0516-
GFOR411154:0:Tyes---0----27972463
GKAU235909:1:Tyes---01084-2513109524202400
GMET269799:1:Tyes----558118019710556
GOXY290633:5:Tyes-------155701559
GSUL243231:0:Tyes----1643012436866851641
GTHE420246:1:Tyes---0887-2342179122552236
GURA351605:0:Tyes---03039-2385240224013037
GVIO251221:0:Tyes---2775--011901941-
HACI382638:1:Tyes----0--545--
HARS204773:0:Tyes365638-6406326300634635631
HAUR316274:2:Tyes---01209-1932-2818-
HCHE349521:0:Tyes0432101218711
HDUC233412:0:Tyes0-98097913411339-134213431340
HHAL349124:0:Tyes106-8209341
HHEP235279:0:Tyes----703-0138787-
HINF281310:0:Tyes6506476486491396-230
HINF374930:0:Tyes13501347134813493180-317316-
HINF71421:0:Tno5955985975961305-230
HMAR272569:8:Tyes------0---
HMOD498761:0:Tyes---013151623461133516021621
HMUK485914:1:Tyes------0---
HNEP81032:0:Tyes------546-0-
HPY:0:Tno----85--0--
HPYL357544:1:Tyes----0-----
HPYL85963:0:Tno----0-----
HSAL478009:4:Tyes------0---
HSOM205914:1:Tyes150915121511151011520-115311541151
HSOM228400:0:Tno30124381596-437436439
HSP64091:2:Tno------0---
HWAL362976:1:Tyes------0---
IHOS453591:0:Tyes------0---
ILOI283942:0:Tyes11678209341
JSP290400:1:Tyes----1-290029433
JSP375286:0:Tyes1562-0810646659
KPNE272620:2:Tyes4476782010341
KRAD266940:2:Fyes---1680-2368---
LACI272621:0:Tyes---------0
LBIF355278:2:Tyes---1621--0305--
LBIF456481:2:Tno---1666--0312--
LBOR355276:1:Tyes---032-917971741-
LBOR355277:1:Tno---01081-728782549-
LBRE387344:2:Tyes---------0
LCAS321967:1:Tyes--------470
LCHO395495:0:Tyes-7-9201440451
LDEL321956:0:Tyes---------0
LDEL390333:0:Tyes---------0
LGAS324831:0:Tyes---------0
LHEL405566:0:Tyes---------0
LINN272626:1:Tno----446---150
LINT189518:0:Tyes----0-----
LINT189518:1:Tyes---0--3081594685-
LINT267671:0:Tno----0-----
LINT267671:1:Tno---1227--9930756-
LINT363253:3:Tyes----207-0559356280
LJOH257314:0:Tyes---------0
LLAC272622:5:Tyes----432---7620
LLAC272623:0:Tyes----451---7570
LMES203120:1:Tyes---------0
LMON169963:0:Tno----371---170
LMON265669:0:Tyes----346-562-170
LPLA220668:0:Tyes--------400
LPNE272624:0:Tno---7761067143010691070142
LPNE297245:1:Fno608--6099911420993994141
LPNE297246:1:Fyes675--6749761440978979143
LPNE400673:0:Tno2--0305131614633073081317
LREU557436:0:Tyes---------0
LSAK314315:0:Tyes--------4150
LSPH444177:1:Tyes---292502071-1021892072
LWEL386043:0:Tyes----538--0206191
LXYL281090:0:Tyes---8070-----
MABS561007:1:Tyes---02018-1435---
MAER449447:0:Tyes---02892-3386209537291431
MAQU351348:2:Tyes2117-192020451
MART243272:0:Tyes---------0
MAVI243243:0:Tyes---968588-0---
MBOV233413:0:Tno---16481343-0---
MBOV410289:0:Tno---17231322-0---
MCAP243233:0:Tyes788-102011451
MCAP340047:0:Tyes---------0
MEXT419610:0:Tyes----1226015991225-1227
MFLA265072:0:Tyes-3218110659
MFLO265311:0:Tyes---------0
MGIL350054:3:Tyes---1073573-0---
MHUN323259:0:Tyes------0---
MJAN243232:2:Tyes------0---
MKAN190192:0:Tyes------0---
MLAB410358:0:Tyes------0---
MLEP272631:0:Tyes----264-0---
MLOT266835:2:Tyes---2933--1051263902641
MMAG342108:0:Tyes----1-1627016052
MMAR267377:0:Tyes------0---
MMAR368407:0:Tyes------0---
MMAR394221:0:Tyes----1419---0-
MMAR402880:1:Tyes------0---
MMAR426368:0:Tyes------0---
MMAR444158:0:Tyes------0---
MMYC272632:0:Tyes---------0
MPET420662:1:Tyes-2-0810909659
MSME246196:0:Tyes---0499-1277---
MSP164756:1:Tno---0572-1697---
MSP164757:0:Tno---0507-1663---
MSP189918:2:Tyes---0589-1726---
MSP266779:3:Tyes---302--1624031472
MSP400668:0:Tyes05-31491512148147150
MSP409:2:Tyes---59756153--615406152
MSTA339860:0:Tyes------0---
MSUC221988:0:Tyes20532056205520541310-133134130
MTBCDC:0:Tno---17821438-0---
MTBRV:0:Tno---16461344-0---
MTHE187420:0:Tyes------0---
MTHE264732:0:Tyes---1232---376019
MTUB336982:0:Tno---16211313-0---
MTUB419947:0:Tyes---17161397-0---
MVAN350058:0:Tyes---0391-1015---
MXAN246197:0:Tyes---3153241-108410244
NARO279238:0:Tyes------0141022051408
NEUR228410:0:Tyes489--448441-0443444440
NEUT335283:2:Tyes0--912905-1124907908904
NFAR247156:2:Tyes---503--0---
NGON242231:0:Tyes----01137119177781
NHAM323097:2:Tyes---01963-251919642181962
NMEN122586:0:Tno----287530366367288
NMEN122587:0:Tyes----01094114579801
NMEN272831:0:Tno----091597577781
NMEN374833:0:Tno----01040109486871
NMUL323848:3:Tyes0883-881888892878887886889
NOCE323261:1:Tyes1647164216431644163601645163816391635
NPHA348780:2:Tyes------0---
NSEN222891:0:Tyes----123--0--
NSP103690:6:Tyes---2391--306208416120
NSP35761:1:Tyes---4220281314530---
NSP387092:0:Tyes----0-1154516234-
NWIN323098:0:Tyes----1597-2105159801596
OANT439375:5:Tyes---1030--022439292241
OCAR504832:0:Tyes---01589-2687158833221590
OIHE221109:0:Tyes---01332--134417841763
OTSU357244:0:Fyes263-----02--
PACN267747:0:Tyes---0------
PAER208963:0:Tyes1389102011451
PAER208964:0:Tno0432101218711
PARC259536:0:Tyes1414---35301104
PAST100379:0:Tyes---------0
PATL342610:0:Tyes1156715618230
PCAR338963:0:Tyes---2547809072810271028811
PCRY335284:1:Tyes1648---35235104
PDIS435591:0:Tyes---207--598413-0
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PMAR167539:0:Tyes------0---
PMAR167540:0:Tyes------0---
PMAR167542:0:Tyes------0---
PMAR167546:0:Tyes------0-322-
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PMAR93060:0:Tyes------0585392-
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PSP312153:0:Tyes----24720103
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SGLO343509:3:Tyes215678209341
SGOR29390:0:Tyes----70---1110
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SHAL458817:0:Tyes054391128710
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SMED366394:3:Tyes------19027502
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ZMOB264203:0:Tyes----1262-0160816391272



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