CANDIDATE ID: 143

CANDIDATE ID: 143

NUMBER OF GENES: 10
AVERAGE SCORE:    9.9948702e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    8.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7484 (ygeR) (b2865)
   Products of gene:
     - G7484-MONOMER (putative lipoprotein; predicted DNA-binding transcriptional regulator)

- G7424 (ftsB) (b2748)
   Products of gene:
     - G7424-MONOMER (essential cell division protein FtsB)

- G7423 (ispD) (b2747)
   Products of gene:
     - G7423-MONOMER (4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer)
     - CPLX0-234 (4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
       Reactions:
        2-C-methyl-D-erythritol-4-phosphate + CTP + H+  =  4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + diphosphate
         In pathways
         PWY-5121 (PWY-5121)
         PWY-6270 (PWY-6270)
         NONMEVIPP-PWY (methylerythritol phosphate pathway)

- G7422 (truD) (b2745)
   Products of gene:
     - G7422-MONOMER (tRNA pseudouridine 13 synthase)
       Reactions:
        tRNA uridine  ->  tRNA pseudouridine

- EG12111 (nlpD) (b2742)
   Products of gene:
     - EG12111-MONOMER (NlpD putative outer membrane lipoprotein)

- EG11817 (surE) (b2744)
   Products of gene:
     - EG11817-MONOMER (broad specificity 5'(3')-nucleotidase and polyphosphatase)
       Reactions:
        a nucleoside 3'-phosphate + H2O  =  a ribonucleoside + phosphate
        a ribonucleoside monophosphate + H2O  =  a ribonucleoside + phosphate
         In pathways
         P165-PWY (P165-PWY)
         PWY-5043 (PWY-5043)
         PWY-6353 (PWY-6353)
         PWY-5044 (PWY-5044)

- EG11816 (ispF) (b2746)
   Products of gene:
     - EG11816-MONOMER (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer)
     - CPLX0-721 (2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase)
       Reactions:
        2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol  ->  CMP + 2-C-methyl-D-erythritol-2,4-cyclodiphosphate
         In pathways
         PWY-5121 (PWY-5121)
         PWY-6270 (PWY-6270)
         NONMEVIPP-PWY (methylerythritol phosphate pathway)

- EG10689 (pcm) (b2743)
   Products of gene:
     - EG10689-MONOMER (L-isoaspartate protein carboxylmethyltransferase type II)
       Reactions:
        S-adenosyl-L-methionine + a protein L-beta-isoaspartate  ->  S-adenosyl-L-homocysteine + a protein L-beta-isoaspartate alpha-methyl ester

- EG10510 (rpoS) (b2741)
   Products of gene:
     - RPOS-MONOMER (RNA polymerase, sigma S (sigma 38) factor)
     - RNAPS-CPLX (RNA polymerase sigma 38)

- EG10258 (eno) (b2779)
   Products of gene:
     - ENOLASE-MONOMER (Eno)
     - ENOLASE-CPLX (enolase)
       Reactions:
        2-phospho-D-glycerate  =  phosphoenolpyruvate + H2O
         In pathways
         PWY-5464 (PWY-5464)
         PWY-6146 (PWY-6146)
         GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)
         GLYCOLYSIS-TCA-GLYOX-BYPASS (superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass)
         ANAEROFRUCAT-PWY (ANAEROFRUCAT-PWY)
         P441-PWY (P441-PWY)
         PWY-3801 (PWY-3801)
         NPGLUCAT-PWY (NPGLUCAT-PWY)
         ANARESP1-PWY (respiration (anaerobic))
         PWY-2221 (PWY-2221)
         PWY-1042 (PWY-1042)
         P122-PWY (P122-PWY)
         PWY-1622 (PWY-1622)
         GLUCONEO-PWY (gluconeogenesis I)
         P341-PWY (P341-PWY)
         PWY-6142 (PWY-6142)
         ANAGLYCOLYSIS-PWY (ANAGLYCOLYSIS-PWY)
         GLYCOLYSIS (glycolysis I)
         P124-PWY (P124-PWY)
         PWY-5723 (PWY-5723)
         PWY-5484 (PWY-5484)
     - CPLX0-2381 (degradosome)



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 129
Effective number of orgs (counting one per cluster within 468 clusters): 78

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175810
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295310
YPES386656 ncbi Yersinia pestis Pestoides F10
YPES377628 ncbi Yersinia pestis Nepal51610
YPES360102 ncbi Yersinia pestis Antiqua10
YPES349746 ncbi Yersinia pestis Angola10
YPES214092 ncbi Yersinia pestis CO9210
YPES187410 ncbi Yersinia pestis KIM 1010
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808110
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A9
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110189
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103319
XFAS405440 ncbi Xylella fastidiosa M129
XCAM487884 Xanthomonas campestris pv. paulliniae9
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-109
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80049
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339139
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3069
VVUL216895 ncbi Vibrio vulnificus CMCP610
VVUL196600 ncbi Vibrio vulnificus YJ01610
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 221063310
VFIS312309 ncbi Vibrio fischeri ES11410
VCHO345073 ncbi Vibrio cholerae O39510
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696110
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252599
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT210
SSP94122 ncbi Shewanella sp. ANA-310
SSON300269 ncbi Shigella sonnei Ss04610
SSED425104 ncbi Shewanella sediminis HAW-EB310
SPRO399741 ncbi Serratia proteamaculans 56810
SPEA398579 ncbi Shewanella pealeana ATCC 70034510
SONE211586 ncbi Shewanella oneidensis MR-110
SLOI323850 ncbi Shewanella loihica PV-410
SHIGELLA ncbi Shigella flexneri 2a str. 2457T10
SHAL458817 ncbi Shewanella halifaxensis HAW-EB410
SGLO343509 ncbi Sodalis glossinidius morsitans9
SFLE373384 ncbi Shigella flexneri 5 str. 840110
SFLE198214 ncbi Shigella flexneri 2a str. 30110
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47610
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915010
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1810
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty210
SDYS300267 ncbi Shigella dysenteriae Sd19710
SDEN318161 ncbi Shewanella denitrificans OS21710
SDEG203122 ncbi Saccharophagus degradans 2-409
SBOY300268 ncbi Shigella boydii Sb22710
SBAL402882 ncbi Shewanella baltica OS18510
SBAL399599 ncbi Shewanella baltica OS19510
RSOL267608 ncbi Ralstonia solanacearum GMI10009
RMET266264 ncbi Ralstonia metallidurans CH349
REUT381666 ncbi Ralstonia eutropha H169
REUT264198 ncbi Ralstonia eutropha JMP1349
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC300010
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a10
PSTU379731 ncbi Pseudomonas stutzeri A150110
PPUT76869 ncbi Pseudomonas putida GB-110
PPUT351746 ncbi Pseudomonas putida F110
PPUT160488 ncbi Pseudomonas putida KT244010
PPRO298386 ncbi Photobacterium profundum SS910
PMEN399739 ncbi Pseudomonas mendocina ymp10
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO110
PING357804 ncbi Psychromonas ingrahamii 379
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC12510
PFLU220664 ncbi Pseudomonas fluorescens Pf-510
PFLU216595 ncbi Pseudomonas fluorescens SBW2510
PFLU205922 ncbi Pseudomonas fluorescens Pf0-110
PENT384676 ncbi Pseudomonas entomophila L4810
PCRY335284 ncbi Psychrobacter cryohalolentis K59
PCAR338963 ncbi Pelobacter carbinolicus DSM 23809
PATL342610 ncbi Pseudoalteromonas atlantica T6c10
PAER208964 ncbi Pseudomonas aeruginosa PAO110
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA1410
NOCE323261 ncbi Nitrosococcus oceani ATCC 1970710
NMUL323848 ncbi Nitrosospira multiformis ATCC 251969
MSP400668 ncbi Marinomonas sp. MWYL110
MPET420662 ncbi Methylibium petroleiphilum PM19
MAQU351348 ncbi Marinobacter aquaeolei VT810
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857810
JSP375286 ncbi Janthinobacterium sp. Marseille9
ILOI283942 ncbi Idiomarina loihiensis L2TR10
HHAL349124 ncbi Halorhodospira halophila SL110
HCHE349521 ncbi Hahella chejuensis KCTC 239610
HARS204773 ncbi Herminiimonas arsenicoxydans9
ESP42895 Enterobacter sp.10
EFER585054 ncbi Escherichia fergusonii ATCC 3546910
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H710
ECOL585397 ncbi Escherichia coli ED1a10
ECOL585057 ncbi Escherichia coli IAI3910
ECOL585056 ncbi Escherichia coli UMN02610
ECOL585055 ncbi Escherichia coli 5598910
ECOL585035 ncbi Escherichia coli S8810
ECOL585034 ncbi Escherichia coli IAI110
ECOL481805 ncbi Escherichia coli ATCC 873910
ECOL469008 ncbi Escherichia coli BL21(DE3)10
ECOL439855 ncbi Escherichia coli SMS-3-510
ECOL413997 ncbi Escherichia coli B str. REL60610
ECOL409438 ncbi Escherichia coli SE1110
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8910
ECOL362663 ncbi Escherichia coli 53610
ECOL331111 ncbi Escherichia coli E24377A10
ECOL316407 ncbi Escherichia coli K-12 substr. W311010
ECOL199310 ncbi Escherichia coli CFT07310
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10439
DARO159087 ncbi Dechloromonas aromatica RCB9
CSAL290398 ncbi Chromohalobacter salexigens DSM 304310
CPSY167879 ncbi Colwellia psychrerythraea 34H10
CJAP155077 Cellvibrio japonicus9
BVIE269482 ncbi Burkholderia vietnamiensis G49
BTHA271848 ncbi Burkholderia thailandensis E2649
BSP36773 Burkholderia sp.9
BPSE320373 ncbi Burkholderia pseudomallei 6689
BPSE272560 ncbi Burkholderia pseudomallei K962439
BMAL320389 ncbi Burkholderia mallei NCTC 102479
BMAL320388 ncbi Burkholderia mallei SAVP19
BMAL243160 ncbi Burkholderia mallei ATCC 233449
BCEN331272 ncbi Burkholderia cenocepacia HI24249
BCEN331271 ncbi Burkholderia cenocepacia AU 10549
BAMB398577 ncbi Burkholderia ambifaria MC40-69
BAMB339670 ncbi Burkholderia ambifaria AMMD9
ASP76114 ncbi Aromatoleum aromaticum EbN19
ASP62928 ncbi Azoarcus sp. BH729
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44910
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL039
APLE416269 ncbi Actinobacillus pleuropneumoniae L209
AHYD196024 Aeromonas hydrophila dhakensis10
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-110


Names of the homologs of the genes in the group in each of these orgs
  G7484   G7424   G7423   G7422   EG12111   EG11817   EG11816   EG10689   EG10510   EG10258   
YPSE349747 YPSIP31758_3294YPSIP31758_3300YPSIP31758_3299YPSIP31758_3297YPSIP31758_3294YPSIP31758_3296YPSIP31758_3298YPSIP31758_3295YPSIP31758_3293YPSIP31758_3316
YPSE273123 YPTB0775YPTB0769YPTB0770YPTB0772YPTB0775YPTB0773YPTB0771YPTB0774YPTB0776YPTB0755
YPES386656 YPDSF_3004YPDSF_2998YPDSF_2999YPDSF_3001YPDSF_3004YPDSF_3002YPDSF_3000YPDSF_3003YPDSF_3005YPDSF_2983
YPES377628 YPN_0737YPN_0731YPN_0732YPN_0734YPN_0737YPN_0735YPN_0733YPN_0736YPN_0738YPN_0716
YPES360102 YPA_2787YPA_2781YPA_2782YPA_2784YPA_2787YPA_2785YPA_2783YPA_2786YPA_2788YPA_2874
YPES349746 YPANGOLA_A0959YPANGOLA_A0965YPANGOLA_A0964YPANGOLA_A0962YPANGOLA_A0959YPANGOLA_A0961YPANGOLA_A0963YPANGOLA_A0960YPANGOLA_A0958YPANGOLA_A0979
YPES214092 YPO3356YPO3362YPO3361YPO3359YPO3356YPO3358YPO3360YPO3357YPO3355YPO3376
YPES187410 Y0833Y0827Y0828Y0830Y0833Y0831Y0829Y0832Y0834Y0814
YENT393305 YE2451YE0768YE0769YE0771YE0774YE0772YE0770YE0773YE0775YE0747
XORY360094 XOOORF_1714XOOORF_1706XOOORF_1707XOOORF_1709XOOORF_1714XOOORF_1711XOOORF_1708XOOORF_1712XOOORF_1705
XORY342109 XOO2805XOO2813XOO2812XOO2810XOO2805XOO2808XOO2811XOO2807XOO2814
XORY291331 XOO2953XOO2962XOO2961XOO2959XOO2953XOO2956XOO2960XOO2955XOO2963
XFAS405440 XFASM12_1995XFASM12_0617XFASM12_0618XFASM12_1995XFASM12_1992XFASM12_0619XFASM12_1993XFASM12_0703XFASM12_0616
XCAM487884 XCC-B100_2550XCC-B100_2558XCC-B100_2557XCC-B100_2555XCC-B100_2550XCC-B100_2553XCC-B100_2556XCC-B100_2552XCC-B100_2559
XCAM316273 XCAORF_1945XCAORF_1937XCAORF_1938XCAORF_1940XCAORF_1945XCAORF_1942XCAORF_1939XCAORF_1943XCAORF_1936
XCAM314565 XC_2522XC_2530XC_2529XC_2527XC_2522XC_2525XC_2528XC_2524XC_2531
XCAM190485 XCC1709XCC1701XCC1702XCC1704XCC1709XCC1706XCC1703XCC1707XCC1700
XAXO190486 XAC1728XAC1720XAC1721XAC1723XAC1728XAC1725XAC1722XAC1726XAC1719
VVUL216895 VV1_1587VV1_1581VV1_1582VV1_1584VV1_1587VV1_1585VV1_1583VV1_1586VV1_1588VV1_1579
VVUL196600 VV2810VV2817VV2816VV2813VV2810VV2812VV2814VV2811VV2808VV2818
VPAR223926 VP2554VP2560VP2559VP2557VP2554VP2556VP2558VP2555VP2553VP2561
VFIS312309 VF2068VF2074VF2073VF2071VF2068VF2070VF2072VF2069VF2067VF2075
VCHO345073 VC0395_A0061VC0395_A0055VC0395_A0056VC0395_A0058VC0395_A0061VC0395_A0059VC0395_A0057VC0395_A0060VC0395_A0062VC0395_A2025
VCHO VC0533VC0527VC0528VC0530VC0533VC0531VC0529VC0532VC0534VC2447
TDEN292415 TBD_0837TBD_0622TBD_1003TBD_0837TBD_0835TBD_1004TBD_0836TBD_0838TBD_0621
STYP99287 STM3038STM2931STM2930STM2928STM2925STM2927STM2929STM2926STM2924STM2952
SSP94122 SHEWANA3_1123SHEWANA3_1117SHEWANA3_1118SHEWANA3_1120SHEWANA3_1123SHEWANA3_1121SHEWANA3_1119SHEWANA3_1122SHEWANA3_1124SHEWANA3_1116
SSON300269 SSO_3016SSO_2896SSO_2895SSO_2893SSO_2890SSO_2892SSO_2894SSO_2891SSO_2889SSO_2936
SSED425104 SSED_1297SSED_1291SSED_1292SSED_1294SSED_1297SSED_1295SSED_1293SSED_1296SSED_1298SSED_1290
SPRO399741 SPRO_0299SPRO_0825SPRO_0826SPRO_0828SPRO_0831SPRO_0829SPRO_0827SPRO_0830SPRO_0832SPRO_0795
SPEA398579 SPEA_1192SPEA_1186SPEA_1187SPEA_1189SPEA_1192SPEA_1190SPEA_1188SPEA_1191SPEA_1193SPEA_1185
SONE211586 SO_3433SO_3439SO_3438SO_3436SO_3433SO_3435SO_3437SO_3434SO_3432SO_3440
SLOI323850 SHEW_1212SHEW_1206SHEW_1207SHEW_1209SHEW_1212SHEW_1210SHEW_1208SHEW_1211SHEW_1213SHEW_1205
SHIGELLA S3067S2964YGBPYGBONLPDSUREYGBBPCMRPODENO
SHAL458817 SHAL_1229SHAL_1223SHAL_1224SHAL_1226SHAL_1229SHAL_1227SHAL_1225SHAL_1228SHAL_1230SHAL_1222
SGLO343509 SG0530SG0525SG0526SG0530SG0528SG0527SG0529SG0251SG0513
SFLE373384 SFV_2928SFV_2750SFV_2751SFV_2753SFV_2756SFV_2754SFV_2752SFV_2755SFV_2757SFV_2676
SFLE198214 AAN44353.1AAN44260.1AAN44259.1AAN44257.1AAN44254.1AAN44256.1AAN44258.1AAN44255.1AAN44253.1AAN44282.1
SENT454169 SEHA_C3268SEHA_C3121SEHA_C3120SEHA_C3118SEHA_C3114SEHA_C3117SEHA_C3119SEHA_C3116SEHA_C3113SEHA_C3149
SENT321314 SCH_2978SCH_2863SCH_2862SCH_2860SCH_2857SCH_2859SCH_2861SCH_2858SCH_2856SCH_2886
SENT295319 SPA2906SPA2787SPA2786SPA2784SPA2781SPA2783SPA2785SPA2782SPA2780SPA2809
SENT220341 STY3194STY3056STY3055STY3053STY3050STY3052STY3054STY3051STY3049STY3081
SENT209261 T2956T2832T2831T2829T2826T2828T2830T2827T2825T2853
SDYS300267 SDY_2941SDY_2947SDY_2946SDY_2944SDY_2941SDY_2943SDY_2945SDY_2942SDY_2940SDY_2996
SDEN318161 SDEN_1203SDEN_1197SDEN_1198SDEN_1200SDEN_1203SDEN_1201SDEN_1199SDEN_1202SDEN_1204SDEN_1196
SDEG203122 SDE_1252SDE_1246SDE_1247SDE_1249SDE_1252SDE_1248SDE_1250SDE_1253SDE_1245
SBOY300268 SBO_3121SBO_2772SBO_2773SBO_2775SBO_2778SBO_2776SBO_2774SBO_2777SBO_2779SBO_2660
SBAL402882 SHEW185_3129SHEW185_3135SHEW185_3134SHEW185_3132SHEW185_3129SHEW185_3131SHEW185_3133SHEW185_3130SHEW185_3128SHEW185_3136
SBAL399599 SBAL195_3272SBAL195_3278SBAL195_3277SBAL195_3275SBAL195_3272SBAL195_3274SBAL195_3276SBAL195_3273SBAL195_3271SBAL195_3279
RSOL267608 RSC1206RSC1130RSC1643RSC1206RSC1204RSC1644RSC1205RSC1207RSC1129
RMET266264 RMET_2116RMET_1056RMET_1954RMET_2116RMET_2118RMET_1953RMET_2117RMET_2115RMET_1055
REUT381666 H16_A2374H16_A1189H16_A1456H16_A2374H16_A2376H16_A1457H16_A1622H16_A2373H16_A1188
REUT264198 REUT_A2096REUT_A1092REUT_A1361REUT_A2096REUT_A2098REUT_A1362REUT_A2097REUT_A2095REUT_A1091
PSYR223283 PSPTO_1564PSPTO_1555PSPTO_1556PSPTO_1561PSPTO_1564PSPTO_1562PSPTO_1560PSPTO_1563PSPTO_1565PSPTO_1554
PSYR205918 PSYR_1373PSYR_1364PSYR_1365PSYR_1370PSYR_1373PSYR_1371PSYR_1369PSYR_1372PSYR_1374PSYR_1363
PSTU379731 PST_1571PST_1558PST_1559PST_1567PST_1571PST_1568PST_1566PST_1569PST_1572PST_1557
PPUT76869 PPUTGB1_1176PPUTGB1_1167PPUTGB1_1168PPUTGB1_1173PPUTGB1_1176PPUTGB1_1174PPUTGB1_1172PPUTGB1_1175PPUTGB1_1177PPUTGB1_1166
PPUT351746 PPUT_4155PPUT_4164PPUT_4163PPUT_4158PPUT_4155PPUT_4157PPUT_4159PPUT_4156PPUT_4154PPUT_1850
PPUT160488 PP_1622PP_1613PP_1614PP_1619PP_1622PP_1620PP_1618PP_1621PP_1623PP_1612
PPRO298386 PBPRA3072PBPRA3078PBPRA3077PBPRA3075PBPRA3072PBPRA3074PBPRA3076PBPRA3073PBPRA3071PBPRA3079
PMEN399739 PMEN_3021PMEN_3032PMEN_3031PMEN_3025PMEN_3021PMEN_3024PMEN_3026PMEN_3023PMEN_3020PMEN_3033
PLUM243265 PLU0718PLU0712PLU0713PLU0715PLU0718PLU0716PLU0714PLU0717PLU0719PLU0913
PING357804 PING_0676PING_0671PING_0672PING_0674PING_0676PING_0675PING_0673PING_0677PING_0669
PHAL326442 PSHAA0690PSHAA0683PSHAA0684PSHAA0686PSHAA0690PSHAA0687PSHAA0685PSHAA0688PSHAA0691PSHAA0742
PFLU220664 PFL_1206PFL_1197PFL_1198PFL_1203PFL_1206PFL_1204PFL_1202PFL_1205PFL_1207PFL_1196
PFLU216595 PFLU1301PFLU1292PFLU1293PFLU1298PFLU1301PFLU1299PFLU1297PFLU1300PFLU1302PFLU1291
PFLU205922 PFL_1131PFL_1122PFL_1123PFL_1128PFL_1131PFL_1129PFL_1127PFL_1130PFL_1132PFL_1121
PENT384676 PSEEN4190PSEEN4199PSEEN4198PSEEN4193PSEEN4190PSEEN4192PSEEN4194PSEEN4191PSEEN4189PSEEN4200
PCRY335284 PCRYO_0661PCRYO_1869PCRYO_1868PCRYO_1971PCRYO_0661PCRYO_0660PCRYO_1149PCRYO_1124PCRYO_1870
PCAR338963 PCAR_1429PCAR_0103PCAR_0760PCAR_1429PCAR_1426PCAR_0102PCAR_1427PCAR_1430PCAR_1230
PATL342610 PATL_3863PATL_3856PATL_3857PATL_3859PATL_3863PATL_3860PATL_3858PATL_3861PATL_3864PATL_3266
PAER208964 PA3623PA3634PA3633PA3626PA3623PA3625PA3627PA3624PA3622PA3635
PAER208963 PA14_17470PA14_17330PA14_17340PA14_17440PA14_17470PA14_17450PA14_17420PA14_17460PA14_17480PA14_17320
NOCE323261 NOC_0792NOC_0853NOC_0854NOC_0856NOC_0792NOC_0789NOC_0855NOC_0790NOC_0183NOC_0852
NMUL323848 NMUL_A0497NMUL_A1229NMUL_A2127NMUL_A0497NMUL_A0495NMUL_A2126NMUL_A0496NMUL_A0498NMUL_A1228
MSP400668 MMWYL1_1307MMWYL1_1300MMWYL1_1301MMWYL1_1303MMWYL1_1307MMWYL1_1304MMWYL1_1302MMWYL1_1305MMWYL1_1308MMWYL1_1299
MPET420662 MPE_A1254MPE_A2848MPE_A1570MPE_A1254MPE_A1252MPE_A1571MPE_A1253MPE_A1255MPE_A2847
MAQU351348 MAQU_0929MAQU_0922MAQU_0923MAQU_0925MAQU_0929MAQU_0926MAQU_0924MAQU_0927MAQU_0930MAQU_0921
KPNE272620 GKPORF_B2672GKPORF_B2441GKPORF_B2440GKPORF_B2438GKPORF_B2435GKPORF_B2437GKPORF_B2439GKPORF_B2436GKPORF_B2434GKPORF_B2457
JSP375286 MMA_2135MMA_1271MMA_1409MMA_2135MMA_2137MMA_1410MMA_2136MMA_2134MMA_1270
ILOI283942 IL0746IL0753IL0752IL0750IL0746IL0749IL0751IL0748IL0745IL0772
HHAL349124 HHAL_1428HHAL_1436HHAL_1435HHAL_1433HHAL_1428HHAL_1431HHAL_1434HHAL_1430HHAL_1427HHAL_1437
HCHE349521 HCH_01876HCH_01868HCH_01869HCH_01871HCH_01876HCH_01872HCH_01870HCH_01874HCH_01877HCH_01867
HARS204773 HEAR1256HEAR2187HEAR1912HEAR1256HEAR1254HEAR1911HEAR1255HEAR1257HEAR2188
ESP42895 ENT638_3306ENT638_3219ENT638_3218ENT638_3216ENT638_3213ENT638_3215ENT638_3217ENT638_3214ENT638_3212ENT638_3233
EFER585054 EFER_2807EFER_0320EFER_0321EFER_0323EFER_0327EFER_0324EFER_0322EFER_0325EFER_0328EFER_0285
ECOO157 Z4203Z4056YGBPYGBONLPDSUREYGBBPCMRPOSENO
ECOL83334 ECS3738ECS3602ECS3601ECS3599ECS3596ECS3598ECS3600ECS3597ECS3595ECS3639
ECOL585397 ECED1_3325ECED1_3204ECED1_3203ECED1_3201ECED1_3197ECED1_3200ECED1_3202ECED1_3199ECED1_3196ECED1_3232
ECOL585057 ECIAI39_3280ECIAI39_2937ECIAI39_2936ECIAI39_2934ECIAI39_2930ECIAI39_2933ECIAI39_2935ECIAI39_2932ECIAI39_2929ECIAI39_3198
ECOL585056 ECUMN_3208ECUMN_3072ECUMN_3071ECUMN_3069ECUMN_3065ECUMN_3068ECUMN_3070ECUMN_3067ECUMN_3064ECUMN_3110
ECOL585055 EC55989_3152EC55989_3020EC55989_3019EC55989_3017EC55989_3013EC55989_3016EC55989_3018EC55989_3015EC55989_3012EC55989_3054
ECOL585035 ECS88_3143ECS88_3018ECS88_3017ECS88_3015ECS88_3011ECS88_3014ECS88_3016ECS88_3013ECS88_3010ECS88_3047
ECOL585034 ECIAI1_2984ECIAI1_2849ECIAI1_2848ECIAI1_2846ECIAI1_2842ECIAI1_2845ECIAI1_2847ECIAI1_2844ECIAI1_3215ECIAI1_2887
ECOL481805 ECOLC_0843ECOLC_0964ECOLC_0965ECOLC_0967ECOLC_0970ECOLC_0968ECOLC_0966ECOLC_0969ECOLC_0971ECOLC_0933
ECOL469008 ECBD_0872ECBD_0976ECBD_0977ECBD_0979ECBD_0982ECBD_0980ECBD_0978ECBD_0981ECBD_0983ECBD_0950
ECOL439855 ECSMS35_2998ECSMS35_2873ECSMS35_2872ECSMS35_2870ECSMS35_2867ECSMS35_2869ECSMS35_2871ECSMS35_2868ECSMS35_2866ECSMS35_2917
ECOL413997 ECB_02698ECB_02598ECB_02597ECB_02595ECB_02592ECB_02594ECB_02596ECB_02593ECB_02591ECB_02624
ECOL409438 ECSE_3129ECSE_3000ECSE_2999ECSE_2997ECSE_2994ECSE_2996ECSE_2998ECSE_2995ECSE_2993ECSE_3037
ECOL405955 APECO1_3660APECO1_3775APECO1_3776APECO1_3778APECO1_3781APECO1_3779APECO1_3777APECO1_3780APECO1_3782APECO1_3751
ECOL364106 UTI89_C3250UTI89_C3119UTI89_C3118UTI89_C3116UTI89_C3112UTI89_C3115UTI89_C3117UTI89_C3114UTI89_C3111UTI89_C3148
ECOL362663 ECP_2859ECP_2730ECP_2729ECP_2727ECP_2723ECP_2726ECP_2728ECP_2725ECP_2722ECP_2760
ECOL331111 ECE24377A_3190ECE24377A_3049ECE24377A_3048ECE24377A_3046ECE24377A_3043ECE24377A_3045ECE24377A_3047ECE24377A_3044ECE24377A_3042ECE24377A_3083
ECOL316407 ECK2861:JW2833:B2865ECK2743:JW2718:B2748ECK2742:JW2717:B2747ECK2740:JW2715:B2745ECK2737:JW2712:B2742ECK2739:JW2714:B2744ECK2741:JW2716:B2746ECK2738:JW2713:B2743ECK2736:JW5437:B2741ECK2773:JW2750:B2779
ECOL199310 C3443C3315C3314C3312C3308C3311C3313C3310C3306C3344
ECAR218491 ECA3531ECA3536ECA3535ECA3533ECA3531ECA3534ECA3532ECA3530ECA3566
DARO159087 DARO_2522DARO_2363DARO_1973DARO_2522DARO_2524DARO_1974DARO_2523DARO_2521DARO_2364
CSAL290398 CSAL_2632CSAL_2639CSAL_2638CSAL_2636CSAL_2632CSAL_2635CSAL_2637CSAL_2634CSAL_2631CSAL_0619
CPSY167879 CPS_1078CPS_1071CPS_1072CPS_1074CPS_1078CPS_1075CPS_1073CPS_1076CPS_1079CPS_4106
CJAP155077 CJA_2219CJA_2224CJA_2223CJA_2221CJA_2219CJA_2222CJA_2220CJA_2218CJA_2225
BVIE269482 BCEP1808_1280BCEP1808_2185BCEP1808_1870BCEP1808_1748BCEP1808_1750BCEP1808_1869BCEP1808_1749BCEP1808_1747BCEP1808_2186
BTHA271848 BTH_I2752BTH_I1895BTH_I2089BTH_I2752BTH_I2223BTH_I2090BTH_I2224BTH_I2226BTH_I1894
BSP36773 BCEP18194_A4460BCEP18194_A5412BCEP18194_A5254BCEP18194_A4460BCEP18194_A5124BCEP18194_A5253BCEP18194_A5123BCEP18194_A5121BCEP18194_A5413
BPSE320373 BURPS668_1511BURPS668_2576BURPS668_2358BURPS668_1511BURPS668_2201BURPS668_2357BURPS668_2200BURPS668_2198BURPS668_2577
BPSE272560 BPSL1381BPSL2269BPSL2099BPSL1381BPSL1502BPSL2098BPSL1503BPSL1505BPSL2270
BMAL320389 BMA10247_0602BMA10247_1465BMA10247_1259BMA10247_0602BMA10247_1119BMA10247_1258BMA10247_1118BMA10247_1116BMA10247_1466
BMAL320388 BMASAVP1_A1320BMASAVP1_A2192BMASAVP1_A1987BMASAVP1_A1320BMASAVP1_A1847BMASAVP1_A1986BMASAVP1_A1846BMASAVP1_A1844BMASAVP1_A2193
BMAL243160 BMA_0803BMA_1688BMA_1490BMA_0803BMA_1357BMA_1489BMA_1356BMA_1354BMA_1689
BCEN331272 BCEN2424_1317BCEN2424_2106BCEN2424_1943BCEN2424_1821BCEN2424_1823BCEN2424_1942BCEN2424_1822BCEN2424_1820BCEN2424_2107
BCEN331271 BCEN_0836BCEN_5971BCEN_6136BCEN_6258BCEN_6256BCEN_6137BCEN_6257BCEN_6259BCEN_5970
BAMB398577 BAMMC406_1228BAMMC406_2016BAMMC406_1858BAMMC406_1228BAMMC406_1734BAMMC406_1857BAMMC406_1733BAMMC406_1731BAMMC406_2017
BAMB339670 BAMB_1202BAMB_2143BAMB_1931BAMB_4030BAMB_1761BAMB_1930BAMB_1760BAMB_1758BAMB_2144
ASP76114 EBA779EBD109EBA6543EBA779EBA782EBA6542EBA781EBA778EBA6162
ASP62928 AZO1089AZO2143AZO1682AZO1089AZO1087AZO1683AZO1088AZO1090AZO2144
ASAL382245 ASA_3467ASA_3474ASA_3473ASA_3471ASA_3467ASA_3470ASA_3472ASA_3469ASA_3466ASA_3475
APLE434271 APJL_1978APJL_0806APJL_0807APJL_1973APJL_1978APJL_1974APJL_0808APJL_1500APJL_1132
APLE416269 APL_1930APL_0801APL_0802APL_1926APL_1930APL_1927APL_0803APL_1475APL_1113
AHYD196024 AHA_0829AHA_0822AHA_0823AHA_0825AHA_0829AHA_0826AHA_0824AHA_0827AHA_0830AHA_0821
AEHR187272 MLG_1826MLG_1838MLG_1837MLG_1835MLG_1826MLG_1829MLG_1836MLG_1828MLG_1825MLG_1839


Organism features enriched in list (features available for 123 out of the 129 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 6.961e-6592
Disease:Bubonic_plague 0.000080066
Disease:Dysentery 0.000080066
Disease:Gastroenteritis 0.00001921013
Disease:Glanders_and_pneumonia 0.009210533
Disease:Plant_rot 0.009210533
Disease:Rice_bacterial_blight_disease 0.009210533
Endospores:No 0.000027826211
GC_Content_Range4:0-40 3.147e-252213
GC_Content_Range4:40-60 2.606e-1281224
GC_Content_Range4:60-100 0.008565840145
GC_Content_Range7:30-40 6.062e-182166
GC_Content_Range7:40-50 0.006773734117
GC_Content_Range7:50-60 1.458e-947107
GC_Content_Range7:60-70 0.002055340134
Genome_Size_Range5:2-4 2.198e-1014197
Genome_Size_Range5:4-6 2.156e-2487184
Genome_Size_Range5:6-10 0.00002532247
Genome_Size_Range9:2-3 6.214e-86120
Genome_Size_Range9:3-4 0.0046043877
Genome_Size_Range9:4-5 1.923e-84296
Genome_Size_Range9:5-6 4.847e-124588
Genome_Size_Range9:6-8 1.372e-62138
Gram_Stain:Gram_Neg 4.267e-20112333
Habitat:Multiple 0.006497448178
Motility:No 2.120e-116151
Motility:Yes 6.832e-1594267
Optimal_temp.:- 0.001589668257
Oxygen_Req:Anaerobic 1.390e-83102
Oxygen_Req:Facultative 1.767e-1276201
Pathogenic_in:No 0.000012928226
Pathogenic_in:Plant 0.0008602915
Pathogenic_in:Rice 0.009210533
Shape:Coccus 1.760e-8182
Shape:Rod 4.275e-16110347
Shape:Spiral 0.0023722134
Temp._range:Psychrophilic 0.000372179



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 70
Effective number of orgs (counting one per cluster within 468 clusters): 55

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STOK273063 ncbi Sulfolobus tokodaii 71
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSOL273057 ncbi Sulfolobus solfataricus P21
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SMAR399550 ncbi Staphylothermus marinus F11
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford1
PAST100379 Onion yellows phytoplasma1
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NFAR247156 ncbi Nocardia farcinica IFM 101521
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LACI272621 ncbi Lactobacillus acidophilus NCFM1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CJEI306537 ncbi Corynebacterium jeikeium K4111
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B311
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K11
ANAE240017 Actinomyces oris MG11


Names of the homologs of the genes in the group in each of these orgs
  G7484   G7424   G7423   G7422   EG12111   EG11817   EG11816   EG10689   EG10510   EG10258   
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116 TVN1380
TACI273075 TA0214
STOK273063 ST0182
SSUI391295 SSU05_1428
SSOL273057 SSO2599
SPYO293653 M5005_SPY0600
SPYO286636 M6_SPY0617
SMAR399550 SMAR_0720
SACI330779 SACI_0434
RTYP257363
RRIC452659 RRIOWA_1304
RRIC392021 A1G_06075
RPRO272947
RMAS416276
RFEL315456 RF_0195
RCON272944 RC1093
RCAN293613 A1E_04700
RBEL391896
RBEL336407
RAKA293614 A1C_05580
PAST100379 PAM284
OTSU357244
NFAR247156 NFA4360
MTUB419947 MRA_3621
MTUB336982 TBFG_13615
MTBRV RV3582C
MTBCDC MT3688
MSYN262723
MSED399549 MSED_2163
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311 MFL270
MCAP340047 MCAP_0213
MBOV410289 BCG_3647C
MBOV233413 MB3613C
MART243272
MABS561007 MAB_0569
LREU557436 LREU_0743
LHEL405566 LHV_1296
LDEL390333 LDB1246
LDEL321956 LBUL_1164
LBRE387344 LVIS_0664
LACI272621 LBA1196
IHOS453591 IGNI_0877
CSUL444179
CJEI306537 JK1559
CDIP257309 DIP1973
BTUR314724
BLON206672 BL0324
BHER314723
BGAR290434
BBUR224326 BB_0337
BAPH372461 BCC_264
BAFZ390236
AYEL322098 AYWB_437
AURANTIMONAS
APER272557 APE1011
ANAE240017 ANA_1973


Organism features enriched in list (features available for 65 out of the 70 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.00136494112
Disease:Rocky_Mountain_Spotted_Fever 0.001329433
Disease:Tuberculosis 0.001329433
Endospores:No 1.410e-743211
GC_Content_Range4:0-40 4.778e-844213
GC_Content_Range4:40-60 0.000048811224
GC_Content_Range7:0-30 5.335e-102147
GC_Content_Range7:50-60 0.00058143107
Genome_Size_Range5:0-2 1.881e-1546155
Genome_Size_Range5:2-4 0.000784711197
Genome_Size_Range5:4-6 0.00002837184
Genome_Size_Range9:0-1 6.392e-141927
Genome_Size_Range9:1-2 0.000084827128
Genome_Size_Range9:5-6 0.0001600188
Gram_Stain:Gram_Neg 0.005784728333
Habitat:Aquatic 0.0001091191
Habitat:Host-associated 6.030e-843206
Habitat:Multiple 0.004043311178
Motility:No 0.000094430151
Motility:Yes 3.358e-613267
Optimal_temp.:37 0.000224423106
Oxygen_Req:Anaerobic 0.00100593102
Pathogenic_in:Human 0.008991932213
Pathogenic_in:No 0.004606316226
Pathogenic_in:Swine 0.000635745
Salinity:Non-halophilic 0.000621522106
Shape:Rod 0.001912828347
Shape:Sphere 2.851e-121519



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 4
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
NOCE323261 ncbi Nitrosococcus oceani ATCC 19707 0.0021656137210
HHAL349124 ncbi Halorhodospira halophila SL1 0.0022957138010
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L550 0.00594407458
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-1 0.0096869159310


Names of the homologs of the genes in the group in each of these orgs
  G7484   G7424   G7423   G7422   EG12111   EG11817   EG11816   EG10689   EG10510   EG10258   
NOCE323261 NOC_0792NOC_0853NOC_0854NOC_0856NOC_0792NOC_0789NOC_0855NOC_0790NOC_0183NOC_0852
HHAL349124 HHAL_1428HHAL_1436HHAL_1435HHAL_1433HHAL_1428HHAL_1431HHAL_1434HHAL_1430HHAL_1427HHAL_1437
LBOR355276 LBL_0236LBL_2796LBL_0188LBL_2791LBL_0610LBL_2753LBL_0403LBL_1785
AEHR187272 MLG_1826MLG_1838MLG_1837MLG_1835MLG_1826MLG_1829MLG_1836MLG_1828MLG_1825MLG_1839


Organism features enriched in list (features available for 4 out of the 4 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Genome_Size_Range9:3-4 0.0077693377



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120910.6645
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951130.6204
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181160.5885
GLYCOCAT-PWY (glycogen degradation I)2461230.5840
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81630.5445
PWY-5148 (acyl-CoA hydrolysis)2271130.5432
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176980.5416
GALACTITOLCAT-PWY (galactitol degradation)73590.5405
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251100.5230
PWY0-1182 (trehalose degradation II (trehalase))70560.5206
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001270.5144
GLUCONSUPER-PWY (D-gluconate degradation)2291100.5142
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149860.5121
PWY-5918 (heme biosynthesis I)2721200.5086
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491140.5050
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491140.5050
ECASYN-PWY (enterobacterial common antigen biosynthesis)191970.4936
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901220.4920
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911220.4902
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961230.4895
PWY-4041 (γ-glutamyl cycle)2791190.4878
PWY0-981 (taurine degradation IV)106680.4855
GLUCARDEG-PWY (D-glucarate degradation I)152840.4845
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96640.4841
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861200.4832
PWY-5386 (methylglyoxal degradation I)3051240.4822
PWY-1269 (CMP-KDO biosynthesis I)3251280.4814
LIPASYN-PWY (phospholipases)2121000.4691
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391290.4677
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481280.4463
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138750.4429
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135740.4427
TYRFUMCAT-PWY (tyrosine degradation I)184890.4420
PWY-5913 (TCA cycle variation IV)3011180.4413
THREONINE-DEG2-PWY (threonine degradation II)214970.4395
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50400.4323
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001160.4272
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94580.4265
LACTOSEUTIL-PWY (lactose degradation II)53410.4263
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135720.4235
PWY-46 (putrescine biosynthesis III)138720.4142
PWY-6134 (tyrosine biosynthesis IV)89550.4140
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651270.4135
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)178840.4134
PWY-561 (superpathway of glyoxylate cycle)162790.4105
GLYOXYLATE-BYPASS (glyoxylate cycle)169810.4099
GLUTDEG-PWY (glutamate degradation II)194880.4092
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4083
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91550.4056
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291190.4037
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212920.4022



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7424   G7423   G7422   EG12111   EG11817   EG11816   EG10689   EG10510   EG10258   
G74840.9993080.9993240.9994160.9999670.9998430.9993740.9998560.999530.999168
G74240.9997230.9995690.9994290.9994310.9996080.9994110.9993210.99979
G74230.9995750.999470.9993290.9999890.999420.999010.999504
G74220.9995450.9995520.9996420.9994910.9994030.999201
EG121110.999860.9994930.9998780.9996550.999218
EG118170.9995380.9998660.9995670.999147
EG118160.9994420.9990830.999377
EG106890.9996160.999227
EG105100.99875
EG10258



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PAIRWISE BLAST SCORES:

  G7484   G7424   G7423   G7422   EG12111   EG11817   EG11816   EG10689   EG10510   EG10258   
G74840.0f0---2.3e-55-----
G7424-0.0f0--------
G7423--0.0f0-------
G7422---0.0f0------
EG121111.0e-56---0.0f0-----
EG11817-----0.0f0----
EG11816------0.0f0---
EG10689-------0.0f0--
EG10510--------0.0f0-
EG10258---------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- NONMEVIPP-PWY (methylerythritol phosphate pathway) (degree of match pw to cand: 0.222, degree of match cand to pw: 0.200, average score: 0.646)
  Genes in pathway or complex:
             0.2428 0.0021 G6237 (dxs) DXS-MONOMER (Dxs)
             0.9888 0.9816 EG12715 (dxr) DXPREDISOM-MONOMER (Dxr)
             0.8170 0.2804 EG10370 (ispG) EG10370-MONOMER (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase)
             0.5427 0.0688 EG11081 (ispH) EG11081-MONOMER (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase)
   *in cand* 0.9995 0.9990 G7423 (ispD) G7423-MONOMER (4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer)
             0.2645 0.0022 EG11294 (ispE) EG11294-MONOMER (IspE)
   *in cand* 0.9996 0.9991 EG11816 (ispF) EG11816-MONOMER (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer)
             0.9045 0.8403 G7508 (idi) IPPISOM-MONOMER (isopentenyl diphosphate isomerase)
             0.9412 0.8620 EG11328 (fdx) OX-FERREDOXIN (oxidized ferredoxin)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9988 EG10258 (eno) ENOLASE-MONOMER (Eno)
   *in cand* 0.9994 0.9988 EG10510 (rpoS) RPOS-MONOMER (RNA polymerase, sigma S (sigma 38) factor)
   *in cand* 0.9996 0.9992 EG10689 (pcm) EG10689-MONOMER (L-isoaspartate protein carboxylmethyltransferase type II)
   *in cand* 0.9996 0.9991 EG11817 (surE) EG11817-MONOMER (broad specificity 5'(3')-nucleotidase and polyphosphatase)
   *in cand* 0.9997 0.9992 EG12111 (nlpD) EG12111-MONOMER (NlpD putative outer membrane lipoprotein)
   *in cand* 0.9995 0.9992 G7422 (truD) G7422-MONOMER (tRNA pseudouridine 13 synthase)
   *in cand* 0.9996 0.9993 G7424 (ftsB) G7424-MONOMER (essential cell division protein FtsB)
   *in cand* 0.9996 0.9992 G7484 (ygeR) G7484-MONOMER (putative lipoprotein; predicted DNA-binding transcriptional regulator)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10510 EG10689 EG11816 EG11817 EG12111 G7422 G7423 G7424 (centered at G7422)
EG10258 (centered at EG10258)
G7484 (centered at G7484)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7484   G7424   G7423   G7422   EG12111   EG11817   EG11816   EG10689   EG10510   EG10258   
299/623188/623418/623198/623282/623397/623415/623318/623332/623408/623
AAEO224324:0:Tyes115-582870-237325--0
AAUR290340:2:Tyes------0--359
AAVE397945:0:Tyes950258-959325994-1
ABAC204669:0:Tyes--1---02306-893
ABAU360910:0:Tyes9171071-9179190918-106
ABOR393595:0:Tyes71247-35-0
ABUT367737:0:Tyes---611-21300-881-
ACAU438753:0:Tyes519-1891-5190189151624511863
ACEL351607:0:Tyes--1448-293-0-1628-
ACRY349163:8:Tyes--384---18711614-0
ADEH290397:0:Tyes0-525292401525986-902
AEHR187272:0:Tyes113121014113014
AFER243159:0:Tyes-0465463-3734643723711
AFUL224325:0:Tyes---1620-892-0--
AHYD196024:0:Tyes8124853690
ALAI441768:0:Tyes-----297--5370
AMAR234826:0:Tyes0-907--242906---
AMAR329726:9:Tyes0-2453-011321392---
AMET293826:0:Tyes2129-1877-212901876-352918
ANAE240017:0:Tyes------0---
AORE350688:0:Tyes2394-0-2394-1-811503
APER272557:0:Tyes-------0--
APHA212042:0:Tyes-----0703---
APLE416269:0:Tyes1174011170117411712-692312
APLE434271:0:Tno1222011217122212182-715326
ASAL382245:5:Tyes1875146309
ASP1667:3:Tyes------0--423
ASP232721:2:Tyes16002080-1601582079159-1
ASP62928:0:Tyes21079611-20612131080
ASP62977:0:Tyes1734733-10730--735
ASP76114:2:Tyes131753394-133393203174
AVAR240292:3:Tyes2002-1218-2002923615-0-
AYEL322098:4:Tyes---------0
BABO262698:1:Tno2-211-202111554222
BAMB339670:2:Tno----0-----
BAMB339670:3:Tno0965745--571744570568966
BAMB398577:3:Tno0797632-0508631507505798
BAMY326423:0:Tyes--0---1-22313006
BANT260799:0:Tno--0---1-41504959
BANT261594:2:Tno--0---1-40764876
BANT568206:2:Tyes--0---1-43095135
BANT592021:2:Tno--0---1-42975120
BAPH198804:0:Tyes-54---3--0
BAPH372461:0:Tyes---------0
BBAC264462:0:Tyes1633---1633--21930-
BBAC360095:0:Tyes1-20-1-20041112
BBRO257310:0:Tyes0695810-028091-696
BBUR224326:21:Fno---------0
BCAN483179:1:Tno2-234-202341595246
BCEN331271:0:Tno-1173-2992971742983000
BCEN331271:2:Tno0---------
BCEN331272:3:Tyes0788625-503505624504502789
BCER226900:1:Tyes--0---1-40984926
BCER288681:0:Tno--0---1-40114812
BCER315749:1:Tyes--0---1-27913420
BCER405917:1:Tyes--0---1-40584892
BCER572264:1:Tno--0---1-41354943
BCIC186490:0:Tyes--30-0-29-40740
BCLA66692:0:Tyes--0---1-15982942
BFRA272559:1:Tyes--2969-273903019--427
BFRA295405:0:Tno--3230-296703279--421
BHAL272558:0:Tyes--0---1-13223521
BHEN283166:0:Tyes1-20-1-20054610
BJAP224911:0:Fyes260-0-2602630261-311
BLIC279010:0:Tyes--0-2274-1-25253438
BLON206672:0:Tyes--0-------
BMAL243160:1:Tno0766596-0476595475473767
BMAL320388:1:Tno0851654-0518653517515852
BMAL320389:1:Tyes0844644-0508643507505845
BMEL224914:1:Tno561-337-5615633375620325
BMEL359391:1:Tno2-205-202051536216
BOVI236:1:Tyes5-182-501821489194
BPAR257311:0:Tno0185298-022971-186
BPER257313:0:Tyes77013680-7707681769-1369
BPET94624:0:Tyes8511080-8518531852-107
BPSE272560:1:Tyes0885712-0124711125127886
BPSE320372:1:Tno01007--0721-7207181008
BPSE320373:1:Tno01028821-06718206706681029
BPUM315750:0:Tyes--0-1988-1-22013012
BQUI283165:0:Tyes1-20-1-20038410
BSP107806:2:Tyes143-1-2--0
BSP36773:2:Tyes0971805-0671804670668972
BSP376:0:Tyes161-0-1611640162-216
BSUB:0:Tyes--0---1-25813506
BSUI204722:1:Tyes2-228-202281577240
BSUI470137:1:Tno2-238-202381589250
BTHA271848:1:Tno8411189-8413211903223240
BTHE226186:0:Tyes--39--1200--694
BTHU281309:1:Tno--0---1-39124685
BTHU412694:1:Tno--0---1-36684399
BTRI382640:1:Tyes1-22-1-22070410
BVIE269482:7:Tyes0897583-462464582463461898
BWEI315730:4:Tyes--0---1-40474843
BXEN266265:0:Tyes-------0--
BXEN266265:1:Tyes0---31-----
CABO218497:0:Tyes--0--335----
CACE272562:1:Tyes--2751---0-865278
CAULO:0:Tyes276-14-27627814277-0
CBEI290402:0:Tyes--0--872166-718470
CBLO203907:0:Tyes98--9----0
CBLO291272:0:Tno114111112-114-113-0103
CBOT36826:1:Tno3500-3401-35001630-2841160
CBOT441770:0:Tyes3459-3361-34591650-2736162
CBOT441771:0:Tno3325-3226-33251660-2659163
CBOT441772:1:Tno3539-3436--1650-2791162
CBOT498213:1:Tno3552-3455--1700-2879167
CBOT508765:1:Tyes--0-32432722136-6602781
CBOT515621:2:Tyes3705-3606-37051720-3028169
CBOT536232:0:Tno3809-3706-38091640-3109161
CBUR227377:1:Tyes14--12--0-
CBUR360115:1:Tno13--12--0-
CBUR434922:2:Tno20--21--3-
CCAV227941:1:Tyes--0--352----
CCHL340177:0:Tyes--642--01503---
CCON360104:2:Tyes---285-01301420--
CCUR360105:0:Tyes---0-539258872--
CDES477974:0:Tyes1951-0-195110080-293121
CDIF272563:1:Tyes--0---1-14473180
CDIP257309:0:Tyes--0-------
CEFF196164:0:Fyes--1630-0----109
CFEL264202:1:Tyes--364--0----
CFET360106:0:Tyes---58-2883720--
CGLU196627:0:Tyes--1788-0-----
CHOM360107:1:Tyes---795-10977180--
CHUT269798:0:Tyes--2131--02212985-2164
CHYD246194:0:Tyes2266-1995129822666501994-1600
CJAP155077:0:Tyes16531-4207
CJEI306537:0:Tyes----0-----
CJEJ192222:0:Tyes---1207-6013450--
CJEJ195099:0:Tno---1311-5714500--
CJEJ354242:2:Tyes---1153-6312960--
CJEJ360109:0:Tyes---1466-135116300--
CJEJ407148:0:Tno---1190-6413350--
CKLU431943:1:Tyes--0--7833526-7373148
CKOR374847:0:Tyes---223-0-221--
CMAQ397948:0:Tyes---40---0--
CMET456442:0:Tyes---658-671-0--
CMIC31964:2:Tyes--0---0---
CMIC443906:2:Tyes--0---0---
CMUR243161:1:Tyes--252--0----
CNOV386415:0:Tyes--0---2026-1370320
CPEL335992:0:Tyes------911-0-
CPER195102:1:Tyes--1185-1383-1062-7150
CPER195103:0:Tno--1170-1354-1058-7390
CPER289380:3:Tyes--1074-1256-961-6670
CPHY357809:0:Tyes--0---2945-31382624
CPNE115711:1:Tyes--0--326----
CPNE115713:0:Tno--314--0----
CPNE138677:0:Tno--320--0----
CPNE182082:0:Tno--336--0----
CPRO264201:0:Fyes--0--555-545--
CPSY167879:0:Tyes7013742582947
CRUT413404:0:Tyes--368--516-566-0
CSAL290398:0:Tyes2053206020592057205320562058205520520
CSP501479:6:Fyes--------0-
CSP501479:8:Fyes359-0--3610360-632
CSP78:2:Tyes521-0-5215230522-160
CTEP194439:0:Tyes--1096--133313770--
CTET212717:0:Tyes--2277--081-1715220
CTRA471472:0:Tyes--256--0----
CTRA471473:0:Tno--256--0----
CVES412965:0:Tyes--352--466-513-0
CVIO243365:0:Tyes248822540-24882486124872489-
DARO159087:0:Tyes5453860-5455471546544387
DDES207559:0:Tyes0-1501--212815011862183752
DETH243164:0:Tyes--0--7171-483523
DGEO319795:1:Tyes1503-176588-35---0
DHAF138119:0:Tyes1187-0-453614071-26404438
DNOD246195:0:Tyes573--745573574--6910
DOLE96561:0:Tyes--1827--83513402434-0
DPSY177439:2:Tyes--0---018--
DRAD243230:3:Tyes--2330172961021300--2360
DRED349161:0:Tyes3012-0-301215851-22902827
DSHI398580:5:Tyes574-0--5720573-581
DSP216389:0:Tyes--0--6781-472515
DSP255470:0:Tno--0--6121-386429
DVUL882:1:Tyes--1127--18091127152014600
ECAN269484:0:Tyes--1--1900-217-
ECAR218491:0:Tyes16531-42036
ECHA205920:0:Tyes--1--6060-575-
ECOL199310:0:Tno1339862574037
ECOL316407:0:Tno1257641352037
ECOL331111:6:Tno1397641352039
ECOL362663:0:Tno1368751463038
ECOL364106:1:Tno1398751463037
ECOL405955:2:Tyes1247641352032
ECOL409438:6:Tyes1407641352044
ECOL413997:0:Tno1107641352033
ECOL439855:4:Tno1287641352051
ECOL469008:0:Tno010610710911211010811111380
ECOL481805:0:Tno012412512713012812612913193
ECOL585034:0:Tno132653024136341
ECOL585035:0:Tno1327641352033
ECOL585055:0:Tno1307641352039
ECOL585056:2:Tno1467641352042
ECOL585057:0:Tno36976413520283
ECOL585397:0:Tno1317641352034
ECOL83334:0:Tno1497641352044
ECOLI:0:Tno1297641352038
ECOO157:0:Tno1507641352044
EFAE226185:3:Tyes------0-13951796
EFER585054:1:Tyes250430313337343235380
ELIT314225:0:Tyes0---011159-10321047
ERUM254945:0:Tyes-----2230---
ERUM302409:0:Tno-----2220---
ESP42895:1:Tyes987641352021
FALN326424:0:Tyes--6085--06084---
FJOH376686:0:Tyes-----1074-3109-0
FMAG334413:1:Tyes--447---446-340
FNOD381764:0:Tyes1496-0-1496782-559251-
FNUC190304:0:Tyes--0---208-1867184
FPHI484022:1:Tyes-10---1330--2
FRANT:0:Tno-12---387--0
FSP106370:0:Tyes--2423---24220--
FSP1855:0:Tyes5536-0---1---
FSUC59374:0:Tyes--0--881928---
FTUL351581:0:Tno-614613---0--615
FTUL393011:0:Tno-530529---0--531
FTUL393115:0:Tyes-12---385--0
FTUL401614:0:Tyes-12---485--0
FTUL418136:0:Tno-281280---0--282
FTUL458234:0:Tno-544543---0--545
GBET391165:0:Tyes--505---5050-667
GFOR411154:0:Tyes-----2296-0-2141
GKAU235909:1:Tyes--0---1-24733062
GMET269799:1:Tyes--12978-13620136313642324
GOXY290633:5:Tyes--0---0--610
GSUL243231:0:Tyes--28340-99728339989991758
GTHE420246:1:Tyes--0---1-22962880
GURA351605:0:Tyes--31730-1647317423491645804
GVIO251221:0:Tyes705-2377-705031441273901-
HACI382638:1:Tyes---614-6106470--
HARS204773:0:Tyes2874620-2061913875
HAUR316274:2:Tyes4039---40394716-19330-
HBUT415426:0:Tyes---0-440-4--
HCHE349521:0:Tyes1145711869120
HDUC233412:0:Tyes237739738-237240737--0
HHAL349124:0:Tyes19861473010
HHEP235279:0:Tyes---1211-01278282221-
HINF281310:0:Tyes30212630270--280
HINF374930:0:Tyes235272273239235238274--0
HINF71421:0:Tno33212933300--259
HMAR272569:8:Tyes---1143-0-1578--
HMOD498761:0:Tyes233-693-2331914693-13280
HMUK485914:1:Tyes---0-2344-497--
HNEP81032:0:Tyes--84--1840-51
HPY:0:Tno---562-5666610--
HPYL357544:1:Tyes---485-4890617--
HPYL85963:0:Tno---451-4560607--
HSAL478009:4:Tyes---0-798----
HSOM205914:1:Tyes940933934937940938936--0
HSOM228400:0:Tno0763024--1129
HSP64091:2:Tno---0-776----
HWAL362976:1:Tyes---0-2315-74--
IHOS453591:0:Tyes-------0--
ILOI283942:0:Tyes18751463027
JSP290400:1:Tyes0-1180--3118022415737
JSP375286:0:Tyes8791144-8798811458808780
KPNE272620:2:Tyes2347641352023
KRAD266940:2:Fyes--1---0---
LACI272621:0:Tyes--------0-
LBIF355278:2:Tyes1294----1230--1323
LBIF456481:2:Tno1336----1310--1367
LBOR355276:1:Tyes46-2364023593942323200-1449
LBOR355277:1:Tno2264-0-51936382120-1132
LBRE387344:2:Tyes---------0
LCAS321967:1:Tyes--122-----5130
LCHO395495:0:Tyes75701138-7577591136758-1
LDEL321956:0:Tyes--------0-
LDEL390333:0:Tyes--------0-
LGAS324831:0:Tyes--------0183
LHEL405566:0:Tyes--------0-
LINN272626:1:Tno--0---1-12212326
LINT189518:1:Tyes3722-527052233773092613-1437
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