CANDIDATE ID: 144

CANDIDATE ID: 144

NUMBER OF GENES: 10
AVERAGE SCORE:    9.9942918e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6780 (ddpB) (b1486)
   Products of gene:
     - YDDR-MONOMER (YddR)
     - ABC-59-CPLX (YddO/YddP/YddQ/YddR/YddS ABC transporter)

- G6779 (ddpC) (b1485)
   Products of gene:
     - YDDQ-MONOMER (YddQ)
     - ABC-59-CPLX (YddO/YddP/YddQ/YddR/YddS ABC transporter)

- G6777 (ddpF) (b1483)
   Products of gene:
     - YDDO-MONOMER (YddO)
     - ABC-59-CPLX (YddO/YddP/YddQ/YddR/YddS ABC transporter)

- G2002 (sapA) (b1294)
   Products of gene:
     - SAPA-MONOMER (SapA)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- G2001 (sapB) (b1293)
   Products of gene:
     - SAPB-MONOMER (SapB)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG12628 (dppF) (b3540)
   Products of gene:
     - DPPF-MONOMER (DppF)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG12627 (dppD) (b3541)
   Products of gene:
     - DPPD-MONOMER (DppD)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG12626 (dppC) (b3542)
   Products of gene:
     - DPPC-MONOMER (DppC)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG12625 (dppB) (b3543)
   Products of gene:
     - DPPB-MONOMER (DppB)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG10248 (dppA) (b3544)
   Products of gene:
     - DPPA-MONOMER (DppA)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 143
Effective number of orgs (counting one per cluster within 468 clusters): 96

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317589
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329539
YPES386656 ncbi Yersinia pestis Pestoides F9
YPES377628 ncbi Yersinia pestis Nepal5169
YPES360102 ncbi Yersinia pestis Antiqua9
YPES214092 ncbi Yersinia pestis CO929
YPES187410 ncbi Yersinia pestis KIM 109
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80819
VEIS391735 ncbi Verminephrobacter eiseniae EF01-210
TTHE300852 ncbi Thermus thermophilus HB89
TTHE262724 ncbi Thermus thermophilus HB2710
TSP28240 Thermotoga sp.9
TROS309801 ncbi Thermomicrobium roseum DSM 515910
TMAR243274 ncbi Thermotoga maritima MSB89
TLET416591 ncbi Thermotoga lettingae TMO10
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT210
STRO369723 ncbi Salinispora tropica CNB-4409
STHE292459 ncbi Symbiobacterium thermophilum IAM 1486310
SSP644076 Silicibacter sp. TrichCH4B10
SSP292414 ncbi Ruegeria sp. TM10409
SSON300269 ncbi Shigella sonnei Ss04610
SPRO399741 ncbi Serratia proteamaculans 56810
SMEL266834 ncbi Sinorhizobium meliloti 102110
SMED366394 ncbi Sinorhizobium medicae WSM41910
SLAC55218 Ruegeria lacuscaerulensis10
SHIGELLA ncbi Shigella flexneri 2a str. 2457T10
SGLO343509 ncbi Sodalis glossinidius morsitans10
SFLE373384 ncbi Shigella flexneri 5 str. 840110
SFLE198214 ncbi Shigella flexneri 2a str. 30110
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47610
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915010
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1810
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty210
SDYS300267 ncbi Shigella dysenteriae Sd19710
SBOY300268 ncbi Shigella boydii Sb22710
SARE391037 ncbi Salinispora arenicola CNS-2059
RXYL266117 ncbi Rubrobacter xylanophilus DSM 994110
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170259
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 1702910
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.19
RSOL267608 ncbi Ralstonia solanacearum GMI10009
RRUB269796 ncbi Rhodospirillum rubrum ATCC 1117010
RPOM246200 ncbi Ruegeria pomeroyi DSS-39
RMET266264 ncbi Ralstonia metallidurans CH3410
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 384110
RFER338969 ncbi Rhodoferax ferrireducens T11810
REUT381666 ncbi Ralstonia eutropha H1610
RETL347834 ncbi Rhizobium etli CFN 4210
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30009
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a10
PSP56811 Psychrobacter sp.10
PSP296591 ncbi Polaromonas sp. JS66610
PPUT76869 ncbi Pseudomonas putida GB-110
PPUT351746 ncbi Pseudomonas putida F110
PPUT160488 ncbi Pseudomonas putida KT244010
PMUL272843 ncbi Pasteurella multocida multocida Pm7010
PMEN399739 ncbi Pseudomonas mendocina ymp10
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO19
PFLU220664 ncbi Pseudomonas fluorescens Pf-510
PFLU216595 ncbi Pseudomonas fluorescens SBW2510
PFLU205922 ncbi Pseudomonas fluorescens Pf0-110
PENT384676 ncbi Pseudomonas entomophila L4810
PCRY335284 ncbi Psychrobacter cryohalolentis K510
PAER208964 ncbi Pseudomonas aeruginosa PAO110
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA1410
OIHE221109 ncbi Oceanobacillus iheyensis HTE83110
OANT439375 ncbi Ochrobactrum anthropi ATCC 4918810
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E10
MSP409 Methylobacterium sp.9
MSP400668 ncbi Marinomonas sp. MWYL110
MSP266779 ncbi Chelativorans sp. BNC110
MLOT266835 ncbi Mesorhizobium loti MAFF30309910
LSPH444177 ncbi Lysinibacillus sphaericus C3-4110
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857810
HINF71421 ncbi Haemophilus influenzae Rd KW2010
HINF281310 ncbi Haemophilus influenzae 86-028NP10
HDUC233412 ncbi Haemophilus ducreyi 35000HP10
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 2377910
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-210
ESP42895 Enterobacter sp.10
EFER585054 ncbi Escherichia fergusonii ATCC 3546910
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H710
ECOL585397 ncbi Escherichia coli ED1a10
ECOL585057 ncbi Escherichia coli IAI3910
ECOL585056 ncbi Escherichia coli UMN02610
ECOL585055 ncbi Escherichia coli 5598910
ECOL585035 ncbi Escherichia coli S8810
ECOL585034 ncbi Escherichia coli IAI110
ECOL481805 ncbi Escherichia coli ATCC 873910
ECOL469008 ncbi Escherichia coli BL21(DE3)10
ECOL439855 ncbi Escherichia coli SMS-3-510
ECOL413997 ncbi Escherichia coli B str. REL60610
ECOL409438 ncbi Escherichia coli SE1110
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8910
ECOL362663 ncbi Escherichia coli 53610
ECOL331111 ncbi Escherichia coli E24377A10
ECOL316407 ncbi Escherichia coli K-12 substr. W311010
ECOL199310 ncbi Escherichia coli CFT07310
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104310
DRED349161 ncbi Desulfotomaculum reducens MI-110
DRAD243230 ncbi Deinococcus radiodurans R19
DHAF138119 ncbi Desulfitobacterium hafniense Y5110
DGEO319795 ncbi Deinococcus geothermalis DSM 113009
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G2010
CVIO243365 ncbi Chromobacterium violaceum ATCC 1247210
CSP501479 Citreicella sp. SE459
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-290110
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C9
BVIE269482 ncbi Burkholderia vietnamiensis G410
BTHA271848 ncbi Burkholderia thailandensis E26410
BSP376 Bradyrhizobium sp.10
BSP36773 Burkholderia sp.10
BPUM315750 ncbi Bacillus pumilus SAFR-03210
BPSE320373 ncbi Burkholderia pseudomallei 66810
BPSE320372 ncbi Burkholderia pseudomallei 1710b10
BPSE272560 ncbi Burkholderia pseudomallei K9624310
BPET94624 Bordetella petrii10
BPAR257311 ncbi Bordetella parapertussis 1282210
BMEL359391 ncbi Brucella melitensis biovar Abortus 23089
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M10
BMAL320389 ncbi Burkholderia mallei NCTC 1024710
BMAL320388 ncbi Burkholderia mallei SAVP110
BMAL243160 ncbi Burkholderia mallei ATCC 2334410
BLIC279010 ncbi Bacillus licheniformis ATCC 1458010
BHAL272558 ncbi Bacillus halodurans C-12510
BCLA66692 ncbi Bacillus clausii KSM-K1610
BCEN331272 ncbi Burkholderia cenocepacia HI242410
BCEN331271 ncbi Burkholderia cenocepacia AU 105410
BBRO257310 ncbi Bordetella bronchiseptica RB5010
BANT592021 ncbi Bacillus anthracis A02489
BANT261594 ncbi Bacillus anthracis Ames Ancestor9
BAMB398577 ncbi Burkholderia ambifaria MC40-610
BAMB339670 ncbi Burkholderia ambifaria AMMD10
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL0310
APLE416269 ncbi Actinobacillus pleuropneumoniae L2010
APER272557 ncbi Aeropyrum pernix K19
AORE350688 ncbi Alkaliphilus oremlandii OhILAs9
AMET293826 ncbi Alkaliphilus metalliredigens QYMF10
ABAU360910 ncbi Bordetella avium 197N10
AAVE397945 ncbi Acidovorax citrulli AAC00-110


Names of the homologs of the genes in the group in each of these orgs
  G6780   G6779   G6777   G2002   G2001   EG12628   EG12627   EG12626   EG12625   EG10248   
YPSE349747 YPSIP31758_4074YPSIP31758_3553YPSIP31758_1784YPSIP31758_1783YPSIP31758_4071YPSIP31758_4072YPSIP31758_4073YPSIP31758_4074YPSIP31758_4075
YPSE273123 YPTB3841YPTB0522YPTB2272YPTB2273YPTB3838YPTB3839YPTB3840YPTB3841YPTB3842
YPES386656 YPDSF_3368YPDSF_3261YPDSF_0788YPDSF_0787YPDSF_3365YPDSF_3366YPDSF_3367YPDSF_3368YPDSF_3369
YPES377628 YPN_3651YPN_0637YPN_1815YPN_1816YPN_3648YPN_3649YPN_3650YPN_3651YPN_3652
YPES360102 YPA_2952YPA_2953YPA_1704YPA_1705YPA_3826YPA_3827YPA_3828YPA_3829YPA_3830
YPES214092 YPO3450YPO3451YPO2355YPO2356YPO3999YPO4000YPO4001YPO4002YPO4003
YPES187410 Y0737Y0736Y1977Y1976Y3830Y3829Y3828Y3826Y3825
YENT393305 YE0490YE0489YE2125YE2126YE4079YE4080YE4081YE4082YE4083
VEIS391735 VEIS_4120VEIS_4119VEIS_4117VEIS_4121VEIS_4120VEIS_4962VEIS_1298VEIS_1299VEIS_4120VEIS_4591
TTHE300852 TTHA1337TTHA1338TTHA0473TTHA1336TTHA1337TTHA0473TTHA0472TTHA1338TTHA1336
TTHE262724 TT_C0972TT_C0973TT_C0102TT_C0971TT_C0972TT_C0102TT_C0101TT_C0973TT_C0972TT_C0971
TSP28240 TRQ2_1667TRQ2_1663TRQ2_0889TRQ2_1666TRQ2_1667TRQ2_1075TRQ2_0434TRQ2_1667TRQ2_1666
TROS309801 TRD_1861TRD_1280TRD_1630TRD_A0699TRD_1279TRD_1630TRD_1629TRD_1280TRD_1861TRD_A0699
TMAR243274 TM_1149TM_1153TM_1063TM_1150TM_1149TM_1750TM_0501TM_1149TM_1150
TLET416591 TLET_0854TLET_0855TLET_0644TLET_0202TLET_0854TLET_0644TLET_0648TLET_0855TLET_0854TLET_0071
STYP99287 STM3629STM3628STM3626STM1692STM1693STM3626STM3627STM3628STM3629STM3630
STRO369723 STROP_0217STROP_1671STROP_3819STROP_0217STROP_3819STROP_0219STROP_1671STROP_0217STROP_0216
STHE292459 STH2314STH2654STH2823STH2315STH1108STH1111STH2824STH2313STH2314STH2315
SSP644076 SCH4B_2930SCH4B_2931SCH4B_2892SCH4B_2895SCH4B_3822SCH4B_3702SCH4B_0504SCH4B_3405SCH4B_3406SCH4B_2895
SSP292414 TM1040_2715TM1040_2716TM1040_2683TM1040_2686TM1040_0037TM1040_3600TM1040_0036TM1040_0037TM1040_2686
SSON300269 SSO_1638SSO_1639SSO_1641SSO_1846SSO_1847SSO_3850SSO_3849SSO_3848SSO_3847SSO_3846
SPRO399741 SPRO_2348SPRO_2349SPRO_2351SPRO_2629SPRO_2630SPRO_0142SPRO_0141SPRO_0140SPRO_0139SPRO_3431
SMEL266834 SMC01526SMC01527SMC02424SMC00786SMC00787SMC00790SMA1371SMC00788SMC00787SMC00786
SMED366394 SMED_0330SMED_2324SMED_5788SMED_0329SMED_0330SMED_0333SMED_5064SMED_0331SMED_0330SMED_0329
SLAC55218 SL1157_0096SL1157_0095SL1157_0093SL1157_0098SL1157_0096SL1157_0093SL1157_0094SL1157_0095SL1157_0096SL1157_0098
SHIGELLA DPPBS1873OPPFSAPASAPBDPPFDPPDDPPCDPPBDPPA
SGLO343509 SG0061SG0062SG1377SG1506SG1507SG0064SG0063SG0062SG0061SG0060
SFLE373384 SFV_3544SFV_1736SFV_1738SFV_1308SFV_1307SFV_3547SFV_3546SFV_1736SFV_3544SFV_3543
SFLE198214 AAN45029.1AAN45028.1AAN43314.1AAN42910.1AAN42909.1AAN45026.1AAN45027.1AAN45028.1AAN45029.1AAN45030.1
SENT454169 SEHA_C3949SEHA_C3948SEHA_C3946SEHA_C1878SEHA_C1879SEHA_C3946SEHA_C3947SEHA_C3948SEHA_C3949SEHA_C3950
SENT321314 SCH_3560SCH_3559SCH_3557SCH_1685SCH_1686SCH_3557SCH_3558SCH_3559SCH_3560SCH_3561
SENT295319 SPA3486SPA3485SPA3483SPA1192SPA1191SPA3483SPA3484SPA3485SPA3486SPA3487
SENT220341 STY4169STY4170STY4172STY1369STY1368STY4172STY4171STY4170STY4169STY4168
SENT209261 T3886T3887T3889T1597T1598T3889T3888T3887T3886T3885
SDYS300267 SDY_4566SDY_4565SDY_1611SDY_1638SDY_1639SDY_4563SDY_4564SDY_4565SDY_4566SDY_4567
SBOY300268 SBO_1571SBO_1572SBO_1574SBO_1768SBO_1769SBO_3539SBO_3540SBO_3541SBO_3542SBO_1768
SARE391037 SARE_1662SARE_1663SARE_4209SARE_0256SARE_4209SARE_0258SARE_1663SARE_0256SARE_0255
RXYL266117 RXYL_2423RXYL_2422RXYL_0876RXYL_2424RXYL_3026RXYL_0876RXYL_0875RXYL_2422RXYL_2423RXYL_2424
RSPH349102 RSPH17025_3964RSPH17025_0374RSPH17025_3963RSPH17025_3964RSPH17025_3967RSPH17025_3966RSPH17025_3965RSPH17025_3964RSPH17025_3963
RSPH349101 RSPH17029_3970RSPH17029_2463RSPH17029_4158RSPH17029_3969RSPH17029_3970RSPH17029_3973RSPH17029_4157RSPH17029_3971RSPH17029_3970RSPH17029_3969
RSPH272943 RSP_3232RSP_0805RSP_3231RSP_3232RSP_3236RSP_3235RSP_3233RSP_3232RSP_3231
RSOL267608 RSC1381RSC1382RSC2866RSC1380RSC1381RSC1884RSC2868RSC1381RSC1380
RRUB269796 RRU_A2357RRU_A1919RRU_A2174RRU_A2356RRU_A2357RRU_A2360RRU_A2359RRU_A2358RRU_A2357RRU_A2356
RPOM246200 SPO_1544SPO_1545SPO_2551SPO_2554SPO_1544SPO_3778SPO_1545SPO_1544SPO_2554
RMET266264 RMET_1409RMET_1410RMET_4580RMET_1408RMET_3157RMET_4580RMET_5091RMET_3156RMET_4576RMET_1408
RLEG216596 RL0779RL4649PRL100280RL0778RL0779RL0782RL0781RL0780RL0779RL0778
RFER338969 RFER_1953RFER_1952RFER_0981RFER_1949RFER_1953RFER_1950RFER_1951RFER_1952RFER_1953RFER_1949
REUT381666 H16_A2099H16_A2098H16_A1304H16_A3298H16_A3297H16_B0716H16_B1125H16_A2098H16_B0720H16_A2100
RETL347834 RHE_CH03993RHE_CH03994RHE_CH00740RHE_CH00736RHE_CH00737RHE_CH00740RHE_CH00739RHE_CH00738RHE_CH00737RHE_CH00736
PSYR223283 PSPTO_4562PSPTO_3250PSPTO_2572PSPTO_4557PSPTO_4562PSPTO_4564PSPTO_4563PSPTO_4562PSPTO_4559
PSYR205918 PSYR_4239PSYR_2680PSYR_2263PSYR_4235PSYR_4239PSYR_4242PSYR_4241PSYR_4240PSYR_4239PSYR_4236
PSP56811 PSYCPRWF_1527PSYCPRWF_1528PSYCPRWF_1530PSYCPRWF_1526PSYCPRWF_1527PSYCPRWF_1530PSYCPRWF_1529PSYCPRWF_1528PSYCPRWF_1527PSYCPRWF_1526
PSP296591 BPRO_2812BPRO_2813BPRO_4337BPRO_2816BPRO_2812BPRO_2815BPRO_2814BPRO_2813BPRO_2812BPRO_2816
PPUT76869 PPUTGB1_0924PPUTGB1_0923PPUTGB1_0921PPUTGB1_0928PPUTGB1_0924PPUTGB1_0921PPUTGB1_0922PPUTGB1_0923PPUTGB1_0924PPUTGB1_0928
PPUT351746 PPUT_0920PPUT_1881PPUT_0917PPUT_0924PPUT_0920PPUT_0917PPUT_0918PPUT_0919PPUT_0920PPUT_0924
PPUT160488 PP_0881PP_0880PP_0878PP_0885PP_0881PP_0878PP_0879PP_0880PP_0881PP_0885
PMUL272843 PM0237PM0238PM0240PM0911PM0912PM0240PM0239PM0238PM0237PM0236
PMEN399739 PMEN_0840PMEN_0839PMEN_0837PMEN_0841PMEN_0840PMEN_0837PMEN_0838PMEN_0839PMEN_0840PMEN_0845
PLUM243265 PLU0301PLU0302PLU2587PLU2588PLU0304PLU0303PLU0302PLU0301PLU0300
PFLU220664 PFL_4025PFL_4026PFL_4028PFL_0881PFL_0877PFL_0874PFL_0875PFL_0876PFL_0877PFL_0881
PFLU216595 PFLU0822PFLU2281PFLU0819PFLU0827PFLU0822PFLU0819PFLU0820PFLU0821PFLU0822PFLU0827
PFLU205922 PFL_0812PFL_0811PFL_0809PFL_0816PFL_0812PFL_0809PFL_0810PFL_0811PFL_0812PFL_0816
PENT384676 PSEEN1056PSEEN1055PSEEN1053PSEEN1060PSEEN1056PSEEN1053PSEEN1054PSEEN1055PSEEN1056PSEEN1060
PCRY335284 PCRYO_0758PCRYO_0757PCRYO_0755PCRYO_0759PCRYO_0758PCRYO_0755PCRYO_0756PCRYO_0757PCRYO_0758PCRYO_0759
PAER208964 PA4503PA4504PA4506PA4500PA4503PA4506PA4505PA4504PA4503PA4502
PAER208963 PA14_58440PA14_58450PA14_58490PA14_58390PA14_58440PA14_58490PA14_58470PA14_58450PA14_58440PA14_58420
OIHE221109 OB2450OB2449OB3070OB2451OB2450OB2452OB3069OB2449OB2450OB2451
OANT439375 OANT_1583OANT_3090OANT_1839OANT_1582OANT_1583OANT_1586OANT_1585OANT_1584OANT_1583OANT_4405
MSUC221988 MS1367MS1366MS1364MS0856MS0855MS1364MS1365MS1366MS1367MS2053
MSP409 M446_1691M446_1692M446_1690M446_1691M446_1694M446_1693M446_1692M446_1691M446_1690
MSP400668 MMWYL1_0113MMWYL1_2058MMWYL1_1682MMWYL1_0114MMWYL1_0113MMWYL1_0110MMWYL1_0111MMWYL1_0112MMWYL1_0113MMWYL1_0114
MSP266779 MESO_0066MESO_1504MESO_3136MESO_0067MESO_0066MESO_0063MESO_0064MESO_0065MESO_0066MESO_0067
MLOT266835 MLR6671MLR6673MLR6675MLR5416MLR5417MLR5420MLR5419MLR5418MLR5417MLR5416
LSPH444177 BSPH_0319BSPH_0320BSPH_4236BSPH_0318BSPH_0319BSPH_2217BSPH_4235BSPH_0320BSPH_0319BSPH_0318
KPNE272620 GKPORF_B3251GKPORF_B4993GKPORF_B1329GKPORF_B0330GKPORF_B0329GKPORF_B3248GKPORF_B3249GKPORF_B3250GKPORF_B3251GKPORF_B3252
HINF71421 HI_1187HI_1186HI_1184HI_1638HI_1639HI_1184HI_1185HI_1186HI_1187HI_0853
HINF281310 NTHI1357NTHI1355NTHI1353NTHI1401NTHI1400NTHI1353NTHI1354NTHI1355NTHI1357NTHI1021
HDUC233412 HD_0312HD_0313HD_0316HD_1230HD_1231HD_0316HD_0315HD_0313HD_0312HD_0215
HAUR316274 HAUR_1606HAUR_1607HAUR_1227HAUR_1605HAUR_1606HAUR_3497HAUR_3498HAUR_1607HAUR_1606HAUR_1605
GTHE420246 GTNG_0479GTNG_0480GTNG_0477GTNG_0478GTNG_0479GTNG_3281GTNG_3282GTNG_0480GTNG_0479GTNG_0478
ESP42895 ENT638_1104ENT638_2704ENT638_0752ENT638_2171ENT638_2172ENT638_0188ENT638_0187ENT638_0186ENT638_0185ENT638_2107
EFER585054 EFER_3540EFER_3539EFER_1708EFER_1660EFER_1661EFER_3537EFER_3538EFER_3539EFER_3540EFER_3541
ECOO157 Z2224Z2225Z2227SAPASAPBDPPFDPPDDPPCDPPBDPPA
ECOL83334 ECS2090ECS2089ECS2087ECS1871ECS1870ECS4420ECS4421ECS4422ECS4423ECS4424
ECOL585397 ECED1_4222ECED1_4809ECED1_1399ECED1_1509ECED1_1508ECED1_4219ECED1_4220ECED1_4221ECED1_4222ECED1_4223
ECOL585057 ECIAI39_1750ECIAI39_1749ECIAI39_1747ECIAI39_1645ECIAI39_1644ECIAI39_4049ECIAI39_4050ECIAI39_4051ECIAI39_4052ECIAI39_4053
ECOL585056 ECUMN_1740ECUMN_1739ECUMN_1737ECUMN_1599ECUMN_1598ECUMN_4050ECUMN_4051ECUMN_4052ECUMN_4053ECUMN_4055
ECOL585055 EC55989_1618EC55989_1617EC55989_1615EC55989_1456EC55989_1455EC55989_3991EC55989_3992EC55989_3993EC55989_3994EC55989_3996
ECOL585035 ECS88_3963ECS88_4574ECS88_1315ECS88_1440ECS88_1439ECS88_3960ECS88_3961ECS88_3962ECS88_3963ECS88_3964
ECOL585034 ECIAI1_1496ECIAI1_1495ECIAI1_1493ECIAI1_1319ECIAI1_1318ECIAI1_3698ECIAI1_3699ECIAI1_3700ECIAI1_3701ECIAI1_3703
ECOL481805 ECOLC_2171ECOLC_2172ECOLC_2174ECOLC_2331ECOLC_2332ECOLC_0175ECOLC_0174ECOLC_0173ECOLC_0172ECOLC_0171
ECOL469008 ECBD_2153ECBD_2154ECBD_2156ECBD_2323ECBD_2324ECBD_0196ECBD_0195ECBD_0194ECBD_0193ECBD_0192
ECOL439855 ECSMS35_1687ECSMS35_1688ECSMS35_1690ECSMS35_1828ECSMS35_1829ECSMS35_3859ECSMS35_3860ECSMS35_3861ECSMS35_3862ECSMS35_3863
ECOL413997 ECB_01444ECB_01443ECB_01441ECB_01271ECB_01270ECB_03391ECB_03392ECB_03393ECB_03394ECB_03395
ECOL409438 ECSE_1576ECSE_1575ECSE_1573ECSE_1346ECSE_1345ECSE_3813ECSE_3814ECSE_3815ECSE_3816ECSE_3817
ECOL405955 APECO1_2905APECO1_2375APECO1_362APECO1_457APECO1_456APECO1_2908APECO1_2907APECO1_2906APECO1_2905APECO1_2904
ECOL364106 UTI89_C4081UTI89_C4672UTI89_C1445UTI89_C1571UTI89_C1570UTI89_C4078UTI89_C4079UTI89_C4080UTI89_C4081UTI89_C4082
ECOL362663 ECP_3644ECP_4316ECP_1294ECP_1352ECP_1351ECP_3641ECP_3642ECP_3643ECP_3644ECP_3646
ECOL331111 ECE24377A_1675ECE24377A_1674ECE24377A_1672ECE24377A_1501ECE24377A_1500ECE24377A_4032ECE24377A_4033ECE24377A_4034ECE24377A_4035ECE24377A_4037
ECOL316407 ECK1480:JW1481:B1486ECK1479:JW1480:B1485ECK1477:JW1478:B1483ECK1289:JW1287:B1294ECK1288:JW1286:B1293ECK3527:JW3509:B3540ECK3528:JW3510:B3541ECK3529:JW3511:B3542ECK3530:JW3512:B3543ECK3531:JW3513:B3544
ECOL199310 C4358C5079C1711C1771C1770C4355C4356C4357C4358C4361
ECAR218491 ECA4075ECA4074ECA2320ECA1977ECA1976ECA4390ECA4391ECA4392ECA4393ECA4394
DRED349161 DRED_0390DRED_0391DRED_0393DRED_2454DRED_2453DRED_2450DRED_2451DRED_2452DRED_2453DRED_2454
DRAD243230 DR_0959DR_0958DR_1290DR_0959DR_1567DR_1568DR_0958DR_0959DR_1290
DHAF138119 DSY0503DSY0504DSY0647DSY0502DSY0503DSY0506DSY0505DSY4357DSY0503DSY0502
DGEO319795 DGEO_1190DGEO_0326DGEO_1340DGEO_1189DGEO_1190DGEO_1340DGEO_1341DGEO_1190DGEO_1189
DDES207559 DDE_1184DDE_1183DDE_1181DDE_1185DDE_1184DDE_1181DDE_1182DDE_1183DDE_1184DDE_1185
CVIO243365 CV_1098CV_1099CV_1101CV_1097CV_1098CV_1101CV_1100CV_1099CV_1098CV_1097
CSP501479 CSE45_2493CSE45_2494CSE45_3616CSE45_3619CSE45_2493CSE45_4845CSE45_2494CSE45_4965CSE45_3619
CHYD246194 CHY_1129CHY_1130CHY_1127CHY_1128CHY_1129CHY_1127CHY_1126CHY_1130CHY_1129CHY_1128
CDES477974 DAUD_0386DAUD_0387DAUD_1982DAUD_0386DAUD_0389DAUD_0388DAUD_0387DAUD_0386DAUD_1982
BVIE269482 BCEP1808_3129BCEP1808_5116BCEP1808_3126BCEP1808_3130BCEP1808_3129BCEP1808_3126BCEP1808_3127BCEP1808_3128BCEP1808_3129BCEP1808_3130
BTHA271848 BTH_I0221BTH_II1444BTH_I0224BTH_I0220BTH_I0221BTH_I0224BTH_I0223BTH_I0222BTH_I0221BTH_I0220
BSP376 BRADO6822BRADO1799BRADO3023BRADO1743BRADO1742BRADO1739BRADO1740BRADO1741BRADO1742BRADO1743
BSP36773 BCEP18194_A6391BCEP18194_B1251BCEP18194_A6388BCEP18194_B2067BCEP18194_A6391BCEP18194_A6388BCEP18194_A6389BCEP18194_A6390BCEP18194_A6391BCEP18194_B2067
BPUM315750 BPUM_0822BPUM_0823BPUM_1061BPUM_0821BPUM_0822BPUM_1061BPUM_1060BPUM_0823BPUM_0822BPUM_0821
BPSE320373 BURPS668_0244BURPS668_A1390BURPS668_0247BURPS668_0243BURPS668_0244BURPS668_0247BURPS668_0246BURPS668_0245BURPS668_0244BURPS668_0243
BPSE320372 BURPS1710B_A0462BURPS1710B_B3004BURPS1710B_A0465BURPS1710B_A0461BURPS1710B_A0462BURPS1710B_A0465BURPS1710B_A0464BURPS1710B_A0463BURPS1710B_A0462BURPS1710B_A0461
BPSE272560 BPSL0250BPSS0952BPSL0253BPSL0249BPSL0250BPSL0253BPSL0252BPSL0251BPSL0250BPSL0249
BPET94624 BPET1795BPET2850BPET0286BPET3079BPET1795BPET0286BPET0285BPET2850BPET2851BPET1794
BPAR257311 BPP3260BPP1445BPP3589BPP3261BPP3260BPP3589BPP4126BPP1445BPP3260BPP3261
BMEL359391 BAB1_1599BAB2_1051BAB2_1037BAB1_1599BAB1_1596BAB2_1052BAB1_1598BAB1_1599BAB1_1600
BMEL224914 BMEI0435BMEI0436BMEII0223BMEI0433BMEI0435BMEI0438BMEII0206BMEI0436BMEI0435BMEI0433
BMAL320389 BMA10247_3377BMA10247_A1048BMA10247_3374BMA10247_3378BMA10247_3377BMA10247_3374BMA10247_3375BMA10247_A1048BMA10247_3377BMA10247_3378
BMAL320388 BMASAVP1_A2970BMASAVP1_0249BMASAVP1_A2973BMASAVP1_A2969BMASAVP1_A2970BMASAVP1_A2973BMASAVP1_A2972BMASAVP1_0249BMASAVP1_A2970BMASAVP1_A2969
BMAL243160 BMA_3302BMA_A1276BMA_3305BMA_3301BMA_3302BMA_3305BMA_3304BMA_A1276BMA_3302BMA_3301
BLIC279010 BL03047BL03048BL03317BL03046BL03047BL03317BL03044BL03048BL03047BL03046
BHAL272558 BH3643BH3642BH3645BH3644BH3643BH3645BH0350BH3642BH3643BH3644
BCLA66692 ABC1241ABC1242ABC2415ABC1240ABC0565ABC0568ABC3658ABC1242ABC1241ABC1240
BCEN331272 BCEN2424_3044BCEN2424_4593BCEN2424_3041BCEN2424_4016BCEN2424_3044BCEN2424_3041BCEN2424_3042BCEN2424_3043BCEN2424_3044BCEN2424_3045
BCEN331271 BCEN_2430BCEN_3775BCEN_2427BCEN_4350BCEN_2430BCEN_2427BCEN_2428BCEN_2429BCEN_2430BCEN_2431
BBRO257310 BB3711BB2519BB4024BB3712BB3711BB4024BB4596BB2519BB3711BB3712
BANT592021 BAA_4748BAA_4747BAA_1016BAA_4746BAA_4750BAA_4749BAA_4747BAA_4748BAA_4746
BANT261594 GBAA4732GBAA4731GBAA0912GBAA4729GBAA4734GBAA4733GBAA4731GBAA4732GBAA4729
BAMB398577 BAMMC406_2955BAMMC406_4481BAMMC406_2952BAMMC406_3923BAMMC406_2955BAMMC406_2952BAMMC406_2953BAMMC406_2954BAMMC406_2955BAMMC406_3923
BAMB339670 BAMB_3089BAMB_4019BAMB_3086BAMB_3416BAMB_3089BAMB_3086BAMB_3087BAMB_3088BAMB_3089BAMB_3416
APLE434271 APJL_0065APJL_0066APJL_0068APJL_0064APJL_0801APJL_0068APJL_0067APJL_0066APJL_0065APJL_0866
APLE416269 APL_0065APL_0066APL_0068APL_0064APL_0795APL_0068APL_0067APL_0066APL_0065APL_2010
APER272557 APE0303APE1396APE0300APE2257APE0303APE1402APE1578APE2258APE2257
AORE350688 CLOS_1348CLOS_1349CLOS_1345CLOS_1347CLOS_1345CLOS_1344CLOS_1349CLOS_1348CLOS_1347
AMET293826 AMET_2908AMET_2907AMET_2911AMET_2909AMET_2908AMET_2905AMET_2064AMET_1878AMET_2908AMET_2909
ABAU360910 BAV1160BAV1646BAV0997BAV1159BAV1160BAV2800BAV0998BAV1646BAV1645BAV1159
AAVE397945 AAVE_1659AAVE_1660AAVE_0939AAVE_1658AAVE_1659AAVE_0939AAVE_0938AAVE_0937AAVE_1659AAVE_1658


Organism features enriched in list (features available for 132 out of the 143 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.001697037112
Disease:Bubonic_plague 0.002624956
Disease:Dysentery 0.000123266
Disease:opportunistic_infections 0.009877645
Endospores:No 2.266e-724211
GC_Content_Range4:0-40 1.313e-1710213
GC_Content_Range4:40-60 0.000188168224
GC_Content_Range4:60-100 1.550e-654145
GC_Content_Range7:30-40 3.852e-1110166
GC_Content_Range7:50-60 2.783e-643107
GC_Content_Range7:60-70 1.901e-753134
Genome_Size_Range5:0-2 2.912e-145155
Genome_Size_Range5:2-4 4.289e-624197
Genome_Size_Range5:4-6 2.091e-1377184
Genome_Size_Range5:6-10 2.894e-72647
Genome_Size_Range9:1-2 1.038e-105128
Genome_Size_Range9:2-3 4.130e-610120
Genome_Size_Range9:4-5 7.400e-74196
Genome_Size_Range9:5-6 0.00001443688
Genome_Size_Range9:6-8 3.646e-92538
Gram_Stain:Gram_Neg 2.977e-8102333
Gram_Stain:Gram_Pos 0.000202119150
Habitat:Aquatic 0.0001398891
Habitat:Multiple 0.000348456178
Motility:No 2.170e-713151
Motility:Yes 1.432e-684267
Oxygen_Req:Anaerobic 0.00005159102
Oxygen_Req:Facultative 0.000062264201
Shape:Coccus 2.957e-6482
Shape:Rod 1.326e-12112347
Shape:Spiral 0.0012947134



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 327
Effective number of orgs (counting one per cluster within 468 clusters): 248

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTUR377629 ncbi Teredinibacter turnerae T79010
TSP1755 Thermoanaerobacter sp.1
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SDEG203122 ncbi Saccharophagus degradans 2-400
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PGIN242619 ncbi Porphyromonas gingivalis W830
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-60
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HNEP81032 Hyphomonas neptunium0
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans1
GOXY290633 ncbi Gluconobacter oxydans 621H1
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH721
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
ANAE240017 Actinomyces oris MG11
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G6780   G6779   G6777   G2002   G2001   EG12628   EG12627   EG12626   EG12625   EG10248   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116 TVN1328
TTUR377629
TSP1755 TETH514_0550
TPEN368408 TPEN_1249
TPAL243276
TKOD69014
TFUS269800
TERY203124 TERY_1382
TELO197221 TLR1197
TDEN326298
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SHAE279808
SGOR29390
SEPI176280
SEPI176279
SELO269084 SYC0718_C
SDEG203122
SAUR93062 SACOL0998
SAUR93061 SAOUHSC_00930
SAUR426430 NWMN_0863
SAUR418127 SAHV_0988
SAUR367830 SAUSA300_0894
SAUR359787 SAURJH1_1011
SAUR359786 SAURJH9_0992
SAUR282459 SAS0863
SAUR282458 SAR0958
SAUR273036
SAUR196620 MW0875
SAUR158879 SA0852
SAUR158878 SAV0993
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI330779
RTYP257363
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL316055
RMAS416276
RFEL315456
RDEN375451 RD1_2221
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSTU379731
PSP312153
PRUM264731
PPEN278197
PMAR93060
PMAR74547
PMAR74546
PMAR59920 PMN2A_0705
PMAR167555 NATL1_15391
PMAR167546
PMAR167542 P9515ORF_1189
PMAR167540
PMAR167539
PMAR146891
PISL384616
PINT246198
PGIN242619
PDIS435591
PAST100379
PARC259536
PAER178306
OTSU357244
NWIN323098
NSP387092
NSP35761 NOCA_2403
NSP103690 ALR0141
NSEN222891
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410 NE2480
NARO279238
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_0210
MGEN243273
MFLO265311
MEXT419610 MEXT_1280
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MAVI243243
MART243272
MAER449447
MAEO419665 MAEO_0511
MABS561007
LXYL281090
LWEL386043 LWE0118
LSAK314315
LREU557436
LPNE400673 LPC_2602
LPNE297246 LPP0747
LPNE297245 LPL0728
LPNE272624 LPG0692
LPLA220668
LMON265669 LMOF2365_0154
LMON169963 LMO0136
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671
LINT189518
LINN272626 LIN0183
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286 MMA_3521
IHOS453591
HNEP81032
HMOD498761
HHEP235279
HHAL349124
HBUT415426
HARS204773 HEAR3292
GOXY290633 GOX0655
GFOR411154
GBET391165 GBCGDNIH1_0125
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855 FRANEAN1_3461
FSP106370
FRANT
FPHI484022
FMAG334413
FJOH376686
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DSP255470 CBDBA1034
DSP216389 DEHABAV1_0939
DSHI398580
DNOD246195
DETH243164
CVES412965
CTRA471473
CTRA471472
CTET212717
CSUL444179
CSP78
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CNOV386415 NT01CX_1743
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CCUR360105
CCON360104
CCHL340177 CAG_1883
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT508765 CLL_A2489
CBLO291272
CBLO203907
CAULO
CABO218497
BTUR314724
BTHE226186
BSP107806
BLON206672 BL1346
BHER314723
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292 AVA_1510
AURANTIMONAS
ASP62977
ASP62928 AZO2061
ASP1667
APHA212042
ANAE240017 ANA_1686
AMAR329726 AM1_4650
AMAR234826
ALAI441768
AFER243159 AFE_0121
AEHR187272
ADEH290397
ACRY349163
ACEL351607 ACEL_1120
ABUT367737
ABOR393595
AAUR290340
AAEO224324


Organism features enriched in list (features available for 303 out of the 327 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00151671517
Arrangment:Pairs 0.001779645112
Disease:Pharyngitis 0.005089588
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00068391111
Disease:Wide_range_of_infections 0.00068391111
Disease:bronchitis_and_pneumonitis 0.005089588
Endospores:No 1.683e-7139211
Endospores:Yes 5.434e-9853
GC_Content_Range4:0-40 1.078e-16158213
GC_Content_Range4:40-60 0.000046094224
GC_Content_Range4:60-100 5.266e-750145
GC_Content_Range7:0-30 0.00060913547
GC_Content_Range7:30-40 4.945e-12123166
GC_Content_Range7:50-60 0.000012136107
GC_Content_Range7:60-70 5.561e-745134
Genome_Size_Range5:0-2 1.299e-24133155
Genome_Size_Range5:2-4 0.0000261125197
Genome_Size_Range5:4-6 9.092e-2638184
Genome_Size_Range5:6-10 3.933e-8747
Genome_Size_Range9:0-1 1.183e-82727
Genome_Size_Range9:1-2 2.615e-16106128
Genome_Size_Range9:2-3 5.623e-888120
Genome_Size_Range9:4-5 1.778e-102296
Genome_Size_Range9:5-6 1.440e-121688
Genome_Size_Range9:6-8 1.807e-6638
Gram_Stain:Gram_Neg 9.640e-6148333
Gram_Stain:Gram_Pos 0.002173692150
Habitat:Host-associated 1.636e-9141206
Habitat:Multiple 0.001468677178
Habitat:Terrestrial 0.0001123631
Motility:No 2.669e-10111151
Motility:Yes 4.266e-1494267
Optimal_temp.:30-35 0.009903877
Optimal_temp.:30-37 0.00010511718
Oxygen_Req:Facultative 0.004441091201
Shape:Coccus 5.287e-116982
Shape:Rod 1.153e-18129347
Shape:Sphere 0.00049291719
Shape:Spiral 0.00050352734



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 36
Effective number of orgs (counting one per cluster within 468 clusters): 35

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
APER272557 ncbi Aeropyrum pernix K1 6.600e-82989
TLET416591 ncbi Thermotoga lettingae TMO 9.489e-679910
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF8 0.00001723548
TTHE262724 ncbi Thermus thermophilus HB27 0.000060196010
HACI382638 ncbi Helicobacter acinonychis Sheeba 0.00029475078
TROS309801 ncbi Thermomicrobium roseum DSM 5159 0.0003007112710
HPYL357544 ncbi Helicobacter pylori HPAG1 0.00036515218
HPY ncbi Helicobacter pylori 26695 0.00036515218
TMAR243274 ncbi Thermotoga maritima MSB8 0.00072828419
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-2901 0.0008506125010
TSP28240 Thermotoga sp. 0.00098348709
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 23779 0.0011760129110
RXYL266117 ncbi Rubrobacter xylanophilus DSM 9941 0.0012320129710
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G20 0.0012805130210
HDUC233412 ncbi Haemophilus ducreyi 35000HP 0.0019252135610
MACE188937 ncbi Methanosarcina acetivorans C2A 0.00213606538
DRED349161 ncbi Desulfotomaculum reducens MI-1 0.0021656137210
TTHE300852 ncbi Thermus thermophilus HB8 0.00222249549
HSAL478009 ncbi Halobacterium salinarum R1 0.00233264367
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C 0.00237079619
SLAC55218 Ruegeria lacuscaerulensis 0.0027488140510
LSPH444177 ncbi Lysinibacillus sphaericus C3-41 0.0029936141710
STHE292459 ncbi Symbiobacterium thermophilum IAM 14863 0.0038503145310
PCRY335284 ncbi Psychrobacter cryohalolentis K5 0.0040683146110
STRO369723 ncbi Salinispora tropica CNB-440 0.004839510429
AMET293826 ncbi Alkaliphilus metalliredigens QYMF 0.0048886148810
PSP56811 Psychrobacter sp. 0.0048886148810
OIHE221109 ncbi Oceanobacillus iheyensis HTE831 0.0052634149910
DRAD243230 ncbi Deinococcus radiodurans R1 0.005352910549
SARE391037 ncbi Salinispora arenicola CNS-205 0.005721310629
SSP644076 Silicibacter sp. TrichCH4B 0.0075549155410
DHAF138119 ncbi Desulfitobacterium hafniense Y51 0.0086435157510
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M 0.0087542157710
HINF281310 ncbi Haemophilus influenzae 86-028NP 0.0088662157910
BHAL272558 ncbi Bacillus halodurans C-125 0.0095055159010
BPUM315750 ncbi Bacillus pumilus SAFR-032 0.0099961159810


Names of the homologs of the genes in the group in each of these orgs
  G6780   G6779   G6777   G2002   G2001   EG12628   EG12627   EG12626   EG12625   EG10248   
APER272557 APE0303APE1396APE0300APE2257APE0303APE1402APE1578APE2258APE2257
TLET416591 TLET_0854TLET_0855TLET_0644TLET_0202TLET_0854TLET_0644TLET_0648TLET_0855TLET_0854TLET_0071
CKOR374847 KCR_0930KCR_0931KCR_0933KCR_0510KCR_0930KCR_0931KCR_0930KCR_0929
TTHE262724 TT_C0972TT_C0973TT_C0102TT_C0971TT_C0972TT_C0102TT_C0101TT_C0973TT_C0972TT_C0971
HACI382638 HAC_0560HAC_0561HAC_0559HAC_0560HAC_0563HAC_0561HAC_0560HAC_0559
TROS309801 TRD_1861TRD_1280TRD_1630TRD_A0699TRD_1279TRD_1630TRD_1629TRD_1280TRD_1861TRD_A0699
HPYL357544 HPAG1_0301HPAG1_0302HPAG1_0300HPAG1_0301HPAG1_0304HPAG1_0302HPAG1_0301HPAG1_0300
HPY HP0299HP0300HP0298HP0299HP0302HP0300HP0299HP0298
TMAR243274 TM_1149TM_1153TM_1063TM_1150TM_1149TM_1750TM_0501TM_1149TM_1150
CHYD246194 CHY_1129CHY_1130CHY_1127CHY_1128CHY_1129CHY_1127CHY_1126CHY_1130CHY_1129CHY_1128
TSP28240 TRQ2_1667TRQ2_1663TRQ2_0889TRQ2_1666TRQ2_1667TRQ2_1075TRQ2_0434TRQ2_1667TRQ2_1666
HAUR316274 HAUR_1606HAUR_1607HAUR_1227HAUR_1605HAUR_1606HAUR_3497HAUR_3498HAUR_1607HAUR_1606HAUR_1605
RXYL266117 RXYL_2423RXYL_2422RXYL_0876RXYL_2424RXYL_3026RXYL_0876RXYL_0875RXYL_2422RXYL_2423RXYL_2424
DDES207559 DDE_1184DDE_1183DDE_1181DDE_1185DDE_1184DDE_1181DDE_1182DDE_1183DDE_1184DDE_1185
HDUC233412 HD_0312HD_0313HD_0316HD_1230HD_1231HD_0316HD_0315HD_0313HD_0312HD_0215
MACE188937 MA4250MA0880MA4247MA4250MA0878MA0880MA4250MA3461
DRED349161 DRED_0390DRED_0391DRED_0393DRED_2454DRED_2453DRED_2450DRED_2451DRED_2452DRED_2453DRED_2454
TTHE300852 TTHA1337TTHA1338TTHA0473TTHA1336TTHA1337TTHA0473TTHA0472TTHA1338TTHA1336
HSAL478009 OE4552FOE4550FOE4551FOE4301ROE4317FOE4552FOE4551F
CDES477974 DAUD_0386DAUD_0387DAUD_1982DAUD_0386DAUD_0389DAUD_0388DAUD_0387DAUD_0386DAUD_1982
SLAC55218 SL1157_0096SL1157_0095SL1157_0093SL1157_0098SL1157_0096SL1157_0093SL1157_0094SL1157_0095SL1157_0096SL1157_0098
LSPH444177 BSPH_0319BSPH_0320BSPH_4236BSPH_0318BSPH_0319BSPH_2217BSPH_4235BSPH_0320BSPH_0319BSPH_0318
STHE292459 STH2314STH2654STH2823STH2315STH1108STH1111STH2824STH2313STH2314STH2315
PCRY335284 PCRYO_0758PCRYO_0757PCRYO_0755PCRYO_0759PCRYO_0758PCRYO_0755PCRYO_0756PCRYO_0757PCRYO_0758PCRYO_0759
STRO369723 STROP_0217STROP_1671STROP_3819STROP_0217STROP_3819STROP_0219STROP_1671STROP_0217STROP_0216
AMET293826 AMET_2908AMET_2907AMET_2911AMET_2909AMET_2908AMET_2905AMET_2064AMET_1878AMET_2908AMET_2909
PSP56811 PSYCPRWF_1527PSYCPRWF_1528PSYCPRWF_1530PSYCPRWF_1526PSYCPRWF_1527PSYCPRWF_1530PSYCPRWF_1529PSYCPRWF_1528PSYCPRWF_1527PSYCPRWF_1526
OIHE221109 OB2450OB2449OB3070OB2451OB2450OB2452OB3069OB2449OB2450OB2451
DRAD243230 DR_0959DR_0958DR_1290DR_0959DR_1567DR_1568DR_0958DR_0959DR_1290
SARE391037 SARE_1662SARE_1663SARE_4209SARE_0256SARE_4209SARE_0258SARE_1663SARE_0256SARE_0255
SSP644076 SCH4B_2930SCH4B_2931SCH4B_2892SCH4B_2895SCH4B_3822SCH4B_3702SCH4B_0504SCH4B_3405SCH4B_3406SCH4B_2895
DHAF138119 DSY0503DSY0504DSY0647DSY0502DSY0503DSY0506DSY0505DSY4357DSY0503DSY0502
BMEL224914 BMEI0435BMEI0436BMEII0223BMEI0433BMEI0435BMEI0438BMEII0206BMEI0436BMEI0435BMEI0433
HINF281310 NTHI1357NTHI1355NTHI1353NTHI1401NTHI1400NTHI1353NTHI1354NTHI1355NTHI1357NTHI1021
BHAL272558 BH3643BH3642BH3645BH3644BH3643BH3645BH0350BH3642BH3643BH3644
BPUM315750 BPUM_0822BPUM_0823BPUM_1061BPUM_0821BPUM_0822BPUM_1061BPUM_1060BPUM_0823BPUM_0822BPUM_0821


Organism features enriched in list (features available for 32 out of the 36 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Endospores:Yes 0.0040090853
Habitat:Specialized 4.603e-61253
Oxygen_Req:Facultative 0.00013452201
Pathogenic_in:Human 0.00524275213
Pathogenic_in:No 0.007843419226
Salinity:Moderate_halophilic 0.0025070412
Temp._range:Mesophilic 0.001980519473
Temp._range:Thermophilic 0.0014463735



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73620.5369
GALACTCAT-PWY (D-galactonate degradation)104740.5131
GLUCARDEG-PWY (D-glucarate degradation I)152910.4987
PWY-6196 (serine racemization)102680.4599
GALACTARDEG-PWY (D-galactarate degradation I)151860.4573
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135800.4541
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149840.4456
XYLCAT-PWY (xylose degradation I)2171050.4422
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195980.4382
PWY0-981 (taurine degradation IV)106650.4131
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112670.4104
PWY0-823 (arginine degradation III (arginine decarboxylase/agmatinase pathway))2451080.4045



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6779   G6777   G2002   G2001   EG12628   EG12627   EG12626   EG12625   EG10248   
G67800.9997740.9991880.999610.9997320.9993210.9993790.9997090.9998240.999723
G67790.9988940.9992070.9994220.9989790.9990590.9997230.9996260.999377
G67770.9988240.9985510.9996620.9996860.9988740.9989190.998523
G20020.9998390.9991040.9990060.9995260.999690.999829
G20010.999180.9990750.9996970.9997420.999732
EG126280.9998440.9996010.9995750.999366
EG126270.9996420.999590.999384
EG126260.9998390.999671
EG126250.999795
EG10248



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PAIRWISE BLAST SCORES:

  G6780   G6779   G6777   G2002   G2001   EG12628   EG12627   EG12626   EG12625   EG10248   
G67800.0f0-------3.8e-51-
G6779-0.0f0-----1.7e-46--
G6777--0.0f0--6.2e-58----
G2002---0.0f0-----1.9e-88
G20013.6e-37---0.0f0---1.7e-48-
EG12628-----0.0f0----
EG12627------0.0f0---
EG12626-4.0e-47-----0.0f0--
EG126251.5e-70-------0.0f0-
EG10248---2.2e-94-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-8-CPLX (dipeptide ABC transporter) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9985 EG10248 (dppA) DPPA-MONOMER (DppA)
   *in cand* 0.9996 0.9989 EG12626 (dppC) DPPC-MONOMER (DppC)
   *in cand* 0.9997 0.9989 EG12625 (dppB) DPPB-MONOMER (DppB)
   *in cand* 0.9995 0.9990 EG12628 (dppF) DPPF-MONOMER (DppF)
   *in cand* 0.9995 0.9990 EG12627 (dppD) DPPD-MONOMER (DppD)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9986 G2001 (sapB) SAPB-MONOMER (SapB)
   *in cand* 0.9995 0.9988 G2002 (sapA) SAPA-MONOMER (SapA)
   *in cand* 0.9991 0.9985 G6777 (ddpF) YDDO-MONOMER (YddO)
   *in cand* 0.9994 0.9989 G6779 (ddpC) YDDQ-MONOMER (YddQ)
   *in cand* 0.9996 0.9992 G6780 (ddpB) YDDR-MONOMER (YddR)

- ABC-29-CPLX (peptide uptake ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.200, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9988 G2002 (sapA) SAPA-MONOMER (SapA)
             0.9995 0.9984 G2000 (sapC) SAPC-MONOMER (SapC)
   *in cand* 0.9995 0.9986 G2001 (sapB) SAPB-MONOMER (SapB)
             0.9993 0.9983 EG12304 (sapD) SAPD-MONOMER (SapD)
             0.9992 0.9979 EG12305 (sapF) SAPF-MONOMER (SapF)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9985 EG10248 (dppA) DPPA-MONOMER (DppA)
   *in cand* 0.9997 0.9989 EG12625 (dppB) DPPB-MONOMER (DppB)
   *in cand* 0.9996 0.9989 EG12626 (dppC) DPPC-MONOMER (DppC)
   *in cand* 0.9995 0.9990 EG12627 (dppD) DPPD-MONOMER (DppD)
   *in cand* 0.9995 0.9990 EG12628 (dppF) DPPF-MONOMER (DppF)
   *in cand* 0.9991 0.9985 G6777 (ddpF) YDDO-MONOMER (YddO)
   *in cand* 0.9994 0.9989 G6779 (ddpC) YDDQ-MONOMER (YddQ)
   *in cand* 0.9996 0.9992 G6780 (ddpB) YDDR-MONOMER (YddR)

- ABC-59-CPLX (YddO/YddP/YddQ/YddR/YddS ABC transporter) (degree of match pw to cand: 0.600, degree of match cand to pw: 0.300, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9991 0.9985 G6777 (ddpF) YDDO-MONOMER (YddO)
             0.9977 0.9943 G6778 (ddpD) YDDP-MONOMER (YddP)
             0.9976 0.9901 G6781 (ddpA) YDDS-MONOMER (YddS)
   *in cand* 0.9994 0.9989 G6779 (ddpC) YDDQ-MONOMER (YddQ)
   *in cand* 0.9996 0.9992 G6780 (ddpB) YDDR-MONOMER (YddR)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9985 EG10248 (dppA) DPPA-MONOMER (DppA)
   *in cand* 0.9997 0.9989 EG12625 (dppB) DPPB-MONOMER (DppB)
   *in cand* 0.9996 0.9989 EG12626 (dppC) DPPC-MONOMER (DppC)
   *in cand* 0.9995 0.9990 EG12627 (dppD) DPPD-MONOMER (DppD)
   *in cand* 0.9995 0.9990 EG12628 (dppF) DPPF-MONOMER (DppF)
   *in cand* 0.9995 0.9986 G2001 (sapB) SAPB-MONOMER (SapB)
   *in cand* 0.9995 0.9988 G2002 (sapA) SAPA-MONOMER (SapA)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G6777 G6779 G6780 (centered at G6779)
G2001 G2002 (centered at G2002)
EG10248 EG12625 EG12626 EG12627 EG12628 (centered at EG12626)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6780   G6779   G6777   G2002   G2001   EG12628   EG12627   EG12626   EG12625   EG10248   
219/623202/623227/623200/623221/623244/623236/623221/623206/623204/623
AAVE397945:0:Tyes7117122710711210711710
ABAC204669:0:Tyes21530--2153---2153-
ABAU360910:0:Tyes162648016116218071648647161
ACAU438753:0:Tyes74522452158-01253125422452246-
ACEL351607:0:Tyes--0-------
AFER243159:0:Tyes------0---
AFUL224325:0:Tyes01----2-0-
AHYD196024:0:Tyes--15132171415140-2
AMAR329726:9:Tyes0---------
AMET293826:0:Tyes101810171021101910181015182010181019
ANAE240017:0:Tyes--0-------
AORE350688:0:Tyes4513-10543
APER272557:0:Tyes3116002058311661349-20592058
APLE416269:0:Tyes124073143211987
APLE434271:0:Tno12407044321769
ASAL382245:5:Tyes--1148614877820102-1486
ASP232721:2:Tyes--2--210--
ASP62928:0:Tyes--0-------
ASP76114:2:Tyes--486---0---
AVAR240292:3:Tyes0---------
BABO262698:0:Tno-130---14---
BABO262698:1:Tno3---30-23-
BAMB339670:2:Tno-602-0-----0
BAMB339670:3:Tno3-0-30123-
BAMB398577:2:Tno-548-0-----0
BAMB398577:3:Tno3-0-30123-
BAMY326423:0:Tyes-412-1043-
BANT260799:0:Tno350335020--35053504350235033501
BANT261594:2:Tno3507350603505-35093508350635073505
BANT568206:2:Tyes105510540--10571056105410551053
BANT592021:2:Tno3691369003689-36933692369036913689
BBAC264462:0:Tyes--1--10---
BBAC360095:0:Tyes10-----0--
BBRO257310:0:Tyes1200015181201120015182099012001201
BCAN483179:0:Tno-140---15---
BCAN483179:1:Tno3---30-23-
BCEN331271:1:Tno-0-569------
BCEN331271:2:Tno3-0-301234
BCEN331272:2:Tyes-575-0------
BCEN331272:3:Tyes3-0-301234
BCER226900:1:Tyes--653--0652---
BCER288681:0:Tno341334120--34153414341234133411
BCER315749:1:Tyes--0--0644---
BCER405917:1:Tyes--720--0999---
BCER572264:1:Tno--592--0859---
BCLA66692:0:Tyes6896901882688033136690689688
BHAL272558:0:Tyes3352335133543353335233540335133523353
BHEN283166:0:Tyes10-----0--
BJAP224911:0:Fyes023173877-0324232218442320-
BLIC279010:0:Tyes34329233290432
BLON206672:0:Tyes----0-----
BMAL243160:0:Tno-0-----0--
BMAL243160:1:Tno1-30132-10
BMAL320388:0:Tno-0-----0--
BMAL320388:1:Tno1-40143-10
BMAL320389:0:Tyes-0-----0--
BMAL320389:1:Tyes3-04301-34
BMEL224914:0:Tno--17---0---
BMEL224914:1:Tno23-025-320
BMEL359391:0:Tno-130---14---
BMEL359391:1:Tno3---30-234
BOVI236:0:Tyes--0-----389-
BOVI236:1:Tyes-1-2--01-2
BPAR257311:0:Tno1709020361710170920362558017091710
BPER257313:0:Tyes10-21--012
BPET94624:0:Tyes1525258612816152510258625871524
BPSE272560:0:Tyes-0--------
BPSE272560:1:Tyes1-40143210
BPSE320372:0:Tno-0--------
BPSE320372:1:Tno1-40143210
BPSE320373:0:Tno-0--------
BPSE320373:1:Tno1-40143210
BPUM315750:0:Tyes1226001260259210
BQUI283165:0:Tyes10-----01-
BSP36773:1:Tyes-0-816-----816
BSP36773:2:Tyes3-0-30123-
BSP376:0:Tyes48295512194301234
BSUB:0:Tyes--1--1032-
BSUI204722:0:Tyes-0----1---
BSUI204722:1:Tyes3---30-23-
BSUI470137:0:Tno------0---
BSUI470137:1:Tno21--20-12-
BTHA271848:0:Tno-0--------
BTHA271848:1:Tno1-40143210
BTHU281309:1:Tno338033790--33823381337933803378
BTHU412694:1:Tno--612--0826---
BTRI382640:1:Tyes10-----0--
BVIE269482:6:Tyes-0--------
BVIE269482:7:Tyes3-04301234
BWEI315730:4:Tyes659-662--0936---
BXEN266265:0:Tyes10-----01-
BXEN266265:1:Tyes---0------
CACE272562:1:Tyes--3481--34810---
CBEI290402:0:Tyes---1-945946-01
CBOT36826:1:Tno0---0-----
CBOT441770:0:Tyes0---0-----
CBOT441771:0:Tno0---0-----
CBOT441772:1:Tno0---01851----
CBOT498213:1:Tno0---0-----
CBOT508765:1:Tyes-----0----
CBOT515621:2:Tyes0---0-----
CBOT536232:0:Tno0---0-----
CCHL340177:0:Tyes------0---
CDES477974:0:Tyes01-1569032101569
CDIF272563:1:Tyes-----01---
CHYD246194:0:Tyes3412310432
CKLU431943:1:Tyes12-01--210
CKOR374847:0:Tyes4134144160413--414413412
CNOV386415:0:Tyes------0---
CPER195102:1:Tyes---4-0----
CPER195103:0:Tno---4-0----
CPER289380:3:Tyes---4-0----
CPHY357809:0:Tyes--1168--01167---
CPSY167879:0:Tyes---01--210
CSAL290398:0:Tyes--16950-----0
CSP501479:4:Fyes-----0--120-
CSP501479:7:Fyes--03-----3
CSP501479:8:Fyes01--0--1--
CTEP194439:0:Tyes--976---0697--
CVIO243365:0:Tyes1240143210
DARO159087:0:Tyes--0---0---
DDES207559:0:Tyes3204301234
DGEO319795:1:Tyes8580100685785810061007-858857
DHAF138119:0:Tyes121460143389610
DOLE96561:0:Tyes--0---1---
DPSY177439:2:Tyes--1---0---
DRAD243230:3:Tyes10-327159659701327
DRED349161:0:Tyes0132067206620632064206520662067
DSP216389:0:Tyes-----0----
DSP255470:0:Tno-----0----
DVUL882:1:Tyes--0--023972283--
ECAR218491:0:Tyes213821373431024622463246424652466
ECOL199310:0:Tno260433150595826012602260326042607
ECOL316407:0:Tno1971961941024362435243424332432
ECOL331111:6:Tno1691681661024382439244024412443
ECOL362663:0:Tno234930100585723462347234823492351
ECOL364106:1:Tno26253207012612526222623262426252626
ECOL405955:2:Tyes241229640989724092410241124122413
ECOL409438:6:Tyes2312302281025102511251225132514
ECOL413997:0:Tno1711701681021332134213521362137
ECOL439855:4:Tno01314114221072108210921102112
ECOL469008:0:Tno1963196419662124212543210
ECOL481805:0:Tno2005200620082161216243210
ECOL585034:0:Tno1721711691023392340234123422344
ECOL585035:0:Tno25463128011711625432544254525462547
ECOL585055:0:Tno1591581561024892490249124922494
ECOL585056:2:Tno1411401381024462447244824492451
ECOL585057:0:Tno1051041021023942395239623972398
ECOL585397:0:Tno27333315010110027302731273227332734
ECOL83334:0:Tno2222212191026122613261426152616
ECOLI:0:Tno2022011991022912292229322942295
ECOO157:0:Tno01322923025212522252325242525
EFER585054:1:Tyes18781877480118751876187718781879
ESP42895:1:Tyes93025435802009201032101945
FALN326424:0:Tyes--0--01---
FNOD381764:0:Tyes--1399--13990---
FNUC190304:0:Tyes12-01-32-0
FSP1855:0:Tyes------0---
GBET391165:0:Tyes---0------
GKAU235909:1:Tyes-0-----0--
GMET269799:1:Tyes-3860--01386-384
GOXY290633:5:Tyes--0-------
GSUL243231:0:Tyes-0---118711860--
GTHE420246:1:Tyes2301227612762321
GURA351605:0:Tyes-3400--01340--
GVIO251221:0:Tyes--0--01---
HACI382638:1:Tyes12-014-210
HARS204773:0:Tyes-------0--
HAUR316274:2:Tyes378379037737822772278379378377
HCHE349521:0:Tyes0-17451-6641746174701
HDUC233412:0:Tyes919294894895949392910
HINF281310:0:Tyes2872862843263252842852862870
HINF374930:0:Tyes-384001403938-335
HINF71421:0:Tno3243233217687693213223233240
HMAR272569:8:Tyes164-1114--10-164163
HMUK485914:1:Tyes0-3221-322323-01
HPY:0:Tno12-014-210
HPYL357544:1:Tyes12-014-210
HPYL85963:0:Tno1--013--10
HSAL478009:4:Tyes151-149150-012-151150
HSOM205914:1:Tyes---10----1
HSOM228400:0:Tno---10----1
HSP64091:2:Tno149-147148-0--149148
HWAL362976:1:Tyes960-962961-0--960961
ILOI283942:0:Tyes---01----0
JSP290400:1:Tyes101269-12121212021182119-
JSP375286:0:Tyes----0-----
KPNE272620:2:Tyes2884457510011028812882288328842885
KRAD266940:2:Fyes88802887888--0888887
LINN272626:1:Tno----0-----
LINT363253:3:Tyes--736----0--
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