CANDIDATE ID: 146

CANDIDATE ID: 146

NUMBER OF GENES: 10
AVERAGE SCORE:    9.9957504e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7348 (rseB) (b2571)
   Products of gene:
     - G7348-MONOMER (rseB)
     - CPLX0-7648 (anti-sigma factor)

- EG12341 (rseA) (b2572)
   Products of gene:
     - EG12341-MONOMER (anti-sigma factor)

- EG11897 (rpoE) (b2573)
   Products of gene:
     - RPOE-MONOMER (RNA polymerase, sigma 24 (sigma E) factor)
     - RNAPE-CPLX (RNA polymerase sigma 24)

- EG10857 (rnc) (b2567)
   Products of gene:
     - EG10857-MONOMER (RNase III)
     - CPLX0-3281 (RNase III)
       Reactions:
        RNase III mRNA processing substrate  ->  RNase III processing product mRNA + 2 a single-stranded RNA

- EG10832 (recO) (b2565)
   Products of gene:
     - EG10832-MONOMER (protein interacts with RecR and possibly RecF proteins)
     - RECFOR-CPLX (RecFOR complex)
       Reactions:
        an unstable RecA filament-DNA complex  =  a stabilized RecA filament-DNA complex

- EG10693 (pdxJ) (b2564)
   Products of gene:
     - PDXJ-MONOMER (PdxJ)
     - CPLX0-321 (pyridoxine 5'-phosphate synthase)
       Reactions:
        3-amino-1-hydroxyacetone-1-phosphate + 1-deoxy-D-xylulose 5-phosphate  ->  pyridoxine-5'-phosphate + phosphate + 2 H2O + H+
         In pathways
         PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)
         PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)

- EG10530 (lepB) (b2568)
   Products of gene:
     - EG10530-MONOMER (leader peptidase (signal peptidase I))
       Reactions:
        a peptide with a leader sequence  ->  a peptide + a leader sequence

- EG10529 (lepA) (b2569)
   Products of gene:
     - EG10529-MONOMER (elongation factor 4)

- EG10270 (era) (b2566)
   Products of gene:
     - EG10270-MONOMER (GTP-binding protein)

- EG10247 (acpS) (b2563)
   Products of gene:
     - HOLO-ACP-SYNTH-MONOMER (AcpS)
     - HOLO-ACP-SYNTH-CPLX (holo-[acyl-carrier-protein] synthase)
       Reactions:
        an apo-[acp] + coenzyme A  =  adenosine 3',5'-bisphosphate + a holo-[acp]
         In pathways
         PWY-6012 (PWY-6012)



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 120
Effective number of orgs (counting one per cluster within 468 clusters): 76

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175810
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295310
YPES386656 ncbi Yersinia pestis Pestoides F10
YPES377628 ncbi Yersinia pestis Nepal51610
YPES360102 ncbi Yersinia pestis Antiqua10
YPES349746 ncbi Yersinia pestis Angola10
YPES214092 ncbi Yersinia pestis CO9210
YPES187410 ncbi Yersinia pestis KIM 1010
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808110
VVUL216895 ncbi Vibrio vulnificus CMCP610
VVUL196600 ncbi Vibrio vulnificus YJ01610
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 221063310
VFIS312309 ncbi Vibrio fischeri ES11410
VCHO345073 ncbi Vibrio cholerae O39510
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696110
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252599
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT210
SSP94122 ncbi Shewanella sp. ANA-310
SSON300269 ncbi Shigella sonnei Ss04610
SSED425104 ncbi Shewanella sediminis HAW-EB310
SPRO399741 ncbi Serratia proteamaculans 56810
SPEA398579 ncbi Shewanella pealeana ATCC 70034510
SONE211586 ncbi Shewanella oneidensis MR-110
SLOI323850 ncbi Shewanella loihica PV-410
SHIGELLA ncbi Shigella flexneri 2a str. 2457T10
SHAL458817 ncbi Shewanella halifaxensis HAW-EB410
SGLO343509 ncbi Sodalis glossinidius morsitans10
SFLE373384 ncbi Shigella flexneri 5 str. 840110
SFLE198214 ncbi Shigella flexneri 2a str. 30110
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47610
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915010
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1810
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty210
SDYS300267 ncbi Shigella dysenteriae Sd19710
SDEN318161 ncbi Shewanella denitrificans OS21710
SDEG203122 ncbi Saccharophagus degradans 2-409
SBOY300268 ncbi Shigella boydii Sb22710
SBAL402882 ncbi Shewanella baltica OS18510
SBAL399599 ncbi Shewanella baltica OS19510
RSOL267608 ncbi Ralstonia solanacearum GMI10009
RMET266264 ncbi Ralstonia metallidurans CH349
RFER338969 ncbi Rhodoferax ferrireducens T1189
REUT381666 ncbi Ralstonia eutropha H169
REUT264198 ncbi Ralstonia eutropha JMP1349
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30009
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a9
PSP296591 ncbi Polaromonas sp. JS6669
PPRO298386 ncbi Photobacterium profundum SS910
PNAP365044 ncbi Polaromonas naphthalenivorans CJ29
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO110
PING357804 ncbi Psychromonas ingrahamii 379
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1259
PFLU220664 ncbi Pseudomonas fluorescens Pf-59
PFLU216595 ncbi Pseudomonas fluorescens SBW259
PFLU205922 ncbi Pseudomonas fluorescens Pf0-19
PATL342610 ncbi Pseudoalteromonas atlantica T6c10
PAER208964 ncbi Pseudomonas aeruginosa PAO19
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA149
NOCE323261 ncbi Nitrosococcus oceani ATCC 1970710
NMUL323848 ncbi Nitrosospira multiformis ATCC 251969
MSP400668 ncbi Marinomonas sp. MWYL19
MPET420662 ncbi Methylibium petroleiphilum PM19
MFLA265072 ncbi Methylobacillus flagellatus KT10
LCHO395495 ncbi Leptothrix cholodnii SP-69
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857810
JSP375286 ncbi Janthinobacterium sp. Marseille9
ILOI283942 ncbi Idiomarina loihiensis L2TR10
HHAL349124 ncbi Halorhodospira halophila SL19
HCHE349521 ncbi Hahella chejuensis KCTC 23969
HARS204773 ncbi Herminiimonas arsenicoxydans9
ESP42895 Enterobacter sp.10
EFER585054 ncbi Escherichia fergusonii ATCC 3546910
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H710
ECOL585397 ncbi Escherichia coli ED1a10
ECOL585057 ncbi Escherichia coli IAI3910
ECOL585056 ncbi Escherichia coli UMN02610
ECOL585055 ncbi Escherichia coli 5598910
ECOL585035 ncbi Escherichia coli S8810
ECOL585034 ncbi Escherichia coli IAI110
ECOL481805 ncbi Escherichia coli ATCC 873910
ECOL469008 ncbi Escherichia coli BL21(DE3)10
ECOL439855 ncbi Escherichia coli SMS-3-510
ECOL413997 ncbi Escherichia coli B str. REL60610
ECOL409438 ncbi Escherichia coli SE1110
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8910
ECOL362663 ncbi Escherichia coli 53610
ECOL331111 ncbi Escherichia coli E24377A10
ECOL316407 ncbi Escherichia coli K-12 substr. W311010
ECOL199310 ncbi Escherichia coli CFT07310
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104310
CVIO243365 ncbi Chromobacterium violaceum ATCC 1247210
CPSY167879 ncbi Colwellia psychrerythraea 34H9
CJAP155077 Cellvibrio japonicus9
BVIE269482 ncbi Burkholderia vietnamiensis G49
BTHA271848 ncbi Burkholderia thailandensis E2649
BSP36773 Burkholderia sp.9
BPSE320372 ncbi Burkholderia pseudomallei 1710b9
BPSE272560 ncbi Burkholderia pseudomallei K962439
BPET94624 Bordetella petrii9
BPER257313 ncbi Bordetella pertussis Tohama I9
BPAR257311 ncbi Bordetella parapertussis 128229
BMAL320389 ncbi Burkholderia mallei NCTC 102479
BMAL320388 ncbi Burkholderia mallei SAVP19
BMAL243160 ncbi Burkholderia mallei ATCC 233449
BCEN331272 ncbi Burkholderia cenocepacia HI24249
BCEN331271 ncbi Burkholderia cenocepacia AU 10549
BBRO257310 ncbi Bordetella bronchiseptica RB509
BAMB398577 ncbi Burkholderia ambifaria MC40-69
BAMB339670 ncbi Burkholderia ambifaria AMMD9
ASP76114 ncbi Aromatoleum aromaticum EbN110
ASP62928 ncbi Azoarcus sp. BH7210
ASP232721 ncbi Acidovorax sp. JS429
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4499
AHYD196024 Aeromonas hydrophila dhakensis9
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-19
ABAU360910 ncbi Bordetella avium 197N9
AAVE397945 ncbi Acidovorax citrulli AAC00-19


Names of the homologs of the genes in the group in each of these orgs
  G7348   EG12341   EG11897   EG10857   EG10832   EG10693   EG10530   EG10529   EG10270   EG10247   
YPSE349747 YPSIP31758_1131YPSIP31758_1130YPSIP31758_1129YPSIP31758_1136YPSIP31758_1138YPSIP31758_1139YPSIP31758_1135YPSIP31758_1134YPSIP31758_1137YPSIP31758_1140
YPSE273123 YPTB2895YPTB2896YPTB2897YPTB2890YPTB2888YPTB2887YPTB2891YPTB2892YPTB2889YPTB2886
YPES386656 YPDSF_1558YPDSF_1559YPDSF_1560YPDSF_1553YPDSF_1551YPDSF_1550YPDSF_1554YPDSF_1555YPDSF_1552YPDSF_1549
YPES377628 YPN_1201YPN_1200YPN_1199YPN_1206YPN_1208YPN_1209YPN_1205YPN_1204YPN_1207YPN_1210
YPES360102 YPA_2447YPA_2446YPA_2445YPA_2452YPA_2454YPA_2369YPA_2451YPA_2450YPA_2453YPA_2368
YPES349746 YPANGOLA_A3606YPANGOLA_A3605YPANGOLA_A3604YPANGOLA_A3611YPANGOLA_A3613YPANGOLA_A3614YPANGOLA_A3610YPANGOLA_A3609YPANGOLA_A3612YPANGOLA_A3615
YPES214092 YPO2713YPO2712YPO2711YPO2718YPO2720YPO2930YPO2717YPO2716YPO2719YPO2929
YPES187410 Y1292Y1291Y1290Y1297Y1299Y1300Y1296Y1295Y1298Y1301
YENT393305 YE1012YE1011YE1010YE1017YE1019YE1020YE1016YE1015YE1018YE1021
VVUL216895 VV1_1561VV1_1560VV1_1559VV1_1565VV1_1567VV1_1568VV1_1564VV1_1563VV1_1566VV1_1569
VVUL196600 VV2836VV2837VV2838VV2831VV2829VV2828VV2832VV2833VV2830VV2827
VPAR223926 VP2576VP2577VP2578VP2572VP2570VP2569VP2573VP2574VP2571VP2568
VFIS312309 VF2091VF2092VF2093VF2087VF2085VF2084VF2088VF2089VF2086VF2083
VCHO345073 VC0395_A2043VC0395_A2044VC0395_A2045VC0395_A2039VC0395_A2037VC0395_A2036VC0395_A2040VC0395_A2041VC0395_A2038VC0395_A2035
VCHO VC2465VC2466VC2467VC2461VC2459VC2458VC2462VC2463VC2460VC2457
TDEN292415 TBD_2093TBD_2095TBD_2086TBD_2084TBD_2083TBD_2088TBD_2089TBD_2085TBD_0728
STYP99287 STM2638STM2639STM2640STM2581STM2579STM2578STM2582STM2583STM2580STM2577
SSP94122 SHEWANA3_3030SHEWANA3_3031SHEWANA3_3032SHEWANA3_3026SHEWANA3_3024SHEWANA3_3023SHEWANA3_3027SHEWANA3_3028SHEWANA3_3025SHEWANA3_3022
SSON300269 SSO_2695SSO_2696SSO_2697SSO_2691SSO_2689SSO_2688SSO_2692SSO_2693SSO_2690SSO_2687
SSED425104 SSED_1144SSED_1143SSED_1142SSED_1148SSED_1150SSED_1151SSED_1147SSED_1146SSED_1149SSED_1152
SPRO399741 SPRO_3674SPRO_3675SPRO_3676SPRO_3669SPRO_3667SPRO_3666SPRO_3670SPRO_3671SPRO_3668SPRO_3665
SPEA398579 SPEA_1033SPEA_1032SPEA_1031SPEA_1037SPEA_1039SPEA_1040SPEA_1036SPEA_1035SPEA_1038SPEA_1041
SONE211586 SO_1344SO_1343SO_1342SO_1348SO_1350SO_1351SO_1347SO_1346SO_1349SO_1352
SLOI323850 SHEW_1050SHEW_1049SHEW_1048SHEW_1054SHEW_1056SHEW_1057SHEW_1053SHEW_1052SHEW_1055SHEW_1058
SHIGELLA RSEBRSEARPOERNCRECOPDXJLEPBLEPAERAACPS
SHAL458817 SHAL_1079SHAL_1078SHAL_1077SHAL_1083SHAL_1085SHAL_1086SHAL_1082SHAL_1081SHAL_1084SHAL_1087
SGLO343509 SG1791SG1792SG1793SG1787SG1785SG1784SG1788SG1789SG1786SG1783
SFLE373384 SFV_2634SFV_2635SFV_2636SFV_2630SFV_2628SFV_2627SFV_2631SFV_2632SFV_2629SFV_2626
SFLE198214 AAN44130.1AAN44131.1AAN44132.1AAN44126.1AAN44124.1AAN44123.1AAN44127.1AAN44128.1AAN44125.1AAN44122.1
SENT454169 SEHA_C2852SEHA_C2853SEHA_C2854SEHA_C2847SEHA_C2845SEHA_C2844SEHA_C2849SEHA_C2850SEHA_C2846SEHA_C2843
SENT321314 SCH_2643SCH_2644SCH_2645SCH_2576SCH_2574SCH_2573SCH_2577SCH_2578SCH_2575SCH_2572
SENT295319 SPA0280SPA0279SPA0278SPA0284SPA0286SPA0287SPA0283SPA0282SPA0285SPA0288
SENT220341 STY2831STY2832STY2833STY2827STY2825STY2824STY2828STY2829STY2826STY2823
SENT209261 T0272T0271T0270T0277T0278T0279T0275T0274T0276T0280
SDYS300267 SDY_2812SDY_2813SDY_2814SDY_2808SDY_2806SDY_2805SDY_2809SDY_2810SDY_2807SDY_2804
SDEN318161 SDEN_2770SDEN_2771SDEN_2772SDEN_2766SDEN_2764SDEN_2763SDEN_2767SDEN_2768SDEN_2765SDEN_2762
SDEG203122 SDE_2249SDE_2250SDE_2251SDE_2243SDE_2241SDE_1713SDE_2245SDE_2246SDE_2242
SBOY300268 SBO_2599SBO_2600SBO_2601SBO_2595SBO_2593SBO_2592SBO_2596SBO_2597SBO_2594SBO_2591
SBAL402882 SHEW185_1241SHEW185_1240SHEW185_1239SHEW185_1245SHEW185_1247SHEW185_1248SHEW185_1244SHEW185_1243SHEW185_1246SHEW185_1249
SBAL399599 SBAL195_1274SBAL195_1273SBAL195_1272SBAL195_1278SBAL195_1280SBAL195_1281SBAL195_1277SBAL195_1276SBAL195_1279SBAL195_1282
RSOL267608 RSC1057RSC1055RSC1063RSC1065RSC1066RSC1061RSC1060RSC1064RSC1067
RMET266264 RMET_2423RMET_2425RMET_2418RMET_2416RMET_2415RMET_2420RMET_2421RMET_2417RMET_2414
RFER338969 RFER_1738RFER_1736RFER_1743RFER_1751RFER_1752RFER_1741RFER_1740RFER_1744RFER_1753
REUT381666 H16_A2561H16_A2563H16_A2555H16_A2553H16_A2552H16_A2557H16_A2558H16_A2554H16_A2551
REUT264198 REUT_A2257REUT_A2259REUT_A2252REUT_A2250REUT_A2249REUT_A2254REUT_A2255REUT_A2251REUT_A2248
PSYR223283 PSPTO_4222PSPTO_4223PSPTO_4224PSPTO_4217PSPTO_4215PSPTO_4214PSPTO_4219PSPTO_4220PSPTO_4216
PSYR205918 PSYR_3956PSYR_3957PSYR_3958PSYR_3951PSYR_3949PSYR_3948PSYR_3953PSYR_3954PSYR_3950
PSP296591 BPRO_3641BPRO_3643BPRO_3635BPRO_3633BPRO_3632BPRO_3637BPRO_3638BPRO_3634BPRO_3631
PPRO298386 PBPRA3093PBPRA3094PBPRA3095PBPRA3089PBPRA3087PBPRA3086PBPRA3090PBPRA3091PBPRA3088PBPRA3085
PNAP365044 PNAP_3066PNAP_3068PNAP_3061PNAP_3059PNAP_3058PNAP_3063PNAP_3064PNAP_3060PNAP_3057
PLUM243265 PLU3344PLU3345PLU3346PLU3340PLU3338PLU3337PLU3341PLU3342PLU3339PLU3336
PING357804 PING_0067PING_0066PING_0065PING_0640PING_0642PING_0643PING_0639PING_0638PING_0641
PHAL326442 PSHAA0728PSHAA0727PSHAA0726PSHAA0732PSHAA0734PSHAA0735PSHAA0731PSHAA0730PSHAA0733
PFLU220664 PFL_1450PFL_1449PFL_1448PFL_1071PFL_1073PFL_1074PFL_1070PFL_1069PFL_1072
PFLU216595 PFLU1469PFLU1468PFLU1467PFLU1060PFLU1062PFLU1063PFLU1059PFLU1058PFLU1061
PFLU205922 PFL_1364PFL_1363PFL_1362PFL_0994PFL_0996PFL_0997PFL_0993PFL_0992PFL_0995
PATL342610 PATL_3153PATL_3154PATL_3155PATL_3149PATL_3710PATL_3709PATL_3150PATL_3151PATL_3148PATL_3708
PAER208964 PA0764PA0763PA0762PA0770PA0772PA0773PA0768PA0767PA0771
PAER208963 PA14_54410PA14_54420PA14_54430PA14_54330PA14_54300PA14_54290PA14_54350PA14_54370PA14_54320
NOCE323261 NOC_2464NOC_2465NOC_2466NOC_2458NOC_0794NOC_0795NOC_2460NOC_2461NOC_2457NOC_0796
NMUL323848 NMUL_A1748NMUL_A1746NMUL_A1753NMUL_A1757NMUL_A1759NMUL_A1752NMUL_A1751NMUL_A1754NMUL_A1760
MSP400668 MMWYL1_1100MMWYL1_1098MMWYL1_1246MMWYL1_1248MMWYL1_2830MMWYL1_1245MMWYL1_1244MMWYL1_1247MMWYL1_1249
MPET420662 MPE_A0644MPE_A0642MPE_A0650MPE_A0652MPE_A0653MPE_A0648MPE_A0647MPE_A0651MPE_A0654
MFLA265072 MFLA_1002MFLA_1001MFLA_1000MFLA_1007MFLA_1010MFLA_1011MFLA_1005MFLA_1004MFLA_1008MFLA_1012
LCHO395495 LCHO_0603LCHO_0605LCHO_0598LCHO_0596LCHO_0595LCHO_0600LCHO_0601LCHO_0597LCHO_0594
KPNE272620 GKPORF_B2227GKPORF_B2228GKPORF_B2229GKPORF_B2223GKPORF_B2221GKPORF_B2220GKPORF_B2224GKPORF_B2225GKPORF_B2222GKPORF_B2219
JSP375286 MMA_1364MMA_1362MMA_1370MMA_1372MMA_1373MMA_1368MMA_1367MMA_1371MMA_1374
ILOI283942 IL0814IL0815IL0816IL0810IL0808IL0807IL0811IL0812IL0809IL0806
HHAL349124 HHAL_0038HHAL_0040HHAL_0034HHAL_0032HHAL_0031HHAL_0035HHAL_0036HHAL_0033HHAL_0030
HCHE349521 HCH_01792HCH_01791HCH_01790HCH_01800HCH_01803HCH_00130HCH_01798HCH_01797HCH_01801
HARS204773 HEAR2069HEAR2071HEAR2063HEAR2061HEAR2060HEAR2065HEAR2066HEAR2062HEAR2059
ESP42895 ENT638_3058ENT638_3059ENT638_3060ENT638_3054ENT638_3052ENT638_3051ENT638_3055ENT638_3056ENT638_3053ENT638_3050
EFER585054 EFER_0503EFER_0502EFER_0501EFER_0507EFER_0509EFER_0510EFER_0506EFER_0505EFER_0508EFER_0511
ECOO157 RSEBRSEARPOERNCRECOPDXJLEPBLEPAERAACPS
ECOL83334 ECS3437ECS3438ECS3439ECS3433ECS3431ECS3430ECS3434ECS3435ECS3432ECS3429
ECOL585397 ECED1_3001ECED1_3002ECED1_3003ECED1_2996ECED1_2994ECED1_2993ECED1_2998ECED1_2999ECED1_2995ECED1_2992
ECOL585057 ECIAI39_2776ECIAI39_2777ECIAI39_2778ECIAI39_2772ECIAI39_2770ECIAI39_2769ECIAI39_2773ECIAI39_2774ECIAI39_2771ECIAI39_2768
ECOL585056 ECUMN_2893ECUMN_2894ECUMN_2895ECUMN_2888ECUMN_2886ECUMN_2885ECUMN_2890ECUMN_2891ECUMN_2887ECUMN_2884
ECOL585055 EC55989_2860EC55989_2861EC55989_2862EC55989_2855EC55989_2853EC55989_2852EC55989_2857EC55989_2858EC55989_2854EC55989_2851
ECOL585035 ECS88_2745ECS88_2746ECS88_2747ECS88_2740ECS88_2738ECS88_2737ECS88_2742ECS88_2743ECS88_2739ECS88_2736
ECOL585034 ECIAI1_2684ECIAI1_2685ECIAI1_2686ECIAI1_2678ECIAI1_2676ECIAI1_2675ECIAI1_2680ECIAI1_2681ECIAI1_2677ECIAI1_2674
ECOL481805 ECOLC_1106ECOLC_1105ECOLC_1104ECOLC_1110ECOLC_1112ECOLC_1113ECOLC_1109ECOLC_1108ECOLC_1111ECOLC_1114
ECOL469008 ECBD_1110ECBD_1109ECBD_1108ECBD_1114ECBD_1116ECBD_1117ECBD_1113ECBD_1112ECBD_1115ECBD_1118
ECOL439855 ECSMS35_2724ECSMS35_2725ECSMS35_2726ECSMS35_2720ECSMS35_2718ECSMS35_2717ECSMS35_2721ECSMS35_2722ECSMS35_2719ECSMS35_2716
ECOL413997 ECB_02465ECB_02466ECB_02467ECB_02461ECB_02459ECB_02458ECB_02462ECB_02463ECB_02460ECB_02457
ECOL409438 ECSE_2859ECSE_2860ECSE_2861ECSE_2855ECSE_2853ECSE_2852ECSE_2856ECSE_2857ECSE_2854ECSE_2851
ECOL405955 APECO1_3960APECO1_3959APECO1_3958APECO1_3964APECO1_3966APECO1_3967APECO1_3963APECO1_3962APECO1_3965APECO1_3968
ECOL364106 UTI89_C2893UTI89_C2894UTI89_C2895UTI89_C2888UTI89_C2886UTI89_C2885UTI89_C2890UTI89_C2891UTI89_C2887UTI89_C2884
ECOL362663 ECP_2573ECP_2574ECP_2575ECP_2569ECP_2567ECP_2566ECP_2570ECP_2571ECP_2568ECP_2565
ECOL331111 ECE24377A_2857ECE24377A_2858ECE24377A_2859ECE24377A_2853ECE24377A_2851ECE24377A_2850ECE24377A_2854ECE24377A_2855ECE24377A_2852ECE24377A_2849
ECOL316407 ECK2569:JW2555:B2571ECK2570:JW2556:B2572ECK2571:JW2557:B2573ECK2565:JW2551:B2567ECK2563:JW2549:B2565ECK2562:JW2548:B2564ECK2566:JW2552:B2568ECK2567:JW2553:B2569ECK2564:JW2550:B2566ECK2561:JW2547:B2563
ECOL199310 C3095C3096C3097C3091C3089C3088C3092C3093C3090C3087
ECAR218491 ECA3282ECA3283ECA3284ECA3278ECA3276ECA3275ECA3279ECA3280ECA3277ECA3274
CVIO243365 CV_2060CV_2059CV_2058CV_2066CV_2069CV_2070CV_2064CV_2063CV_2067CV_2072
CPSY167879 CPS_4127CPS_4128CPS_4129CPS_4122CPS_4120CPS_4119CPS_4123CPS_4124CPS_4121
CJAP155077 CJA_2211CJA_2212CJA_2213CJA_2581CJA_2578CJA_1791CJA_2583CJA_2584CJA_2580
BVIE269482 BCEP1808_1048BCEP1808_1046BCEP1808_1053BCEP1808_1055BCEP1808_1056BCEP1808_1052BCEP1808_1051BCEP1808_1054BCEP1808_1057
BTHA271848 BTH_I1725BTH_I1723BTH_I1730BTH_I1732BTH_I1733BTH_I1729BTH_I1728BTH_I1731BTH_I1734
BSP36773 BCEP18194_A4241BCEP18194_A4239BCEP18194_A4246BCEP18194_A4248BCEP18194_A4249BCEP18194_A4245BCEP18194_A4244BCEP18194_A4247BCEP18194_A4250
BPSE320372 BURPS1710B_A3147BURPS1710B_A3149BURPS1710B_A3141BURPS1710B_A3139BURPS1710B_A3138BURPS1710B_A3142BURPS1710B_A3143BURPS1710B_A3140BURPS1710B_A3137
BPSE272560 BPSL2434BPSL2436BPSL2429BPSL2427BPSL2426BPSL2430BPSL2431BPSL2428BPSL2425
BPET94624 BPET1760BPET1758BPET1764BPET1766BPET3259BPET1763BPET1762BPET1765BPET3258
BPER257313 BP2435BP2437BP2431BP2429BP2078BP2432BP2433BP2430BP2079
BPAR257311 BPP3299BPP3301BPP3295BPP3293BPP1762BPP3296BPP3297BPP3294BPP1763
BMAL320389 BMA10247_1794BMA10247_1796BMA10247_1789BMA10247_1787BMA10247_1786BMA10247_1790BMA10247_1791BMA10247_1788BMA10247_1785
BMAL320388 BMASAVP1_A2471BMASAVP1_A2473BMASAVP1_A2466BMASAVP1_A2464BMASAVP1_A2463BMASAVP1_A2467BMASAVP1_A2468BMASAVP1_A2465BMASAVP1_A2462
BMAL243160 BMA_0538BMA_0536BMA_0543BMA_0545BMA_0546BMA_0542BMA_0541BMA_0544BMA_0547
BCEN331272 BCEN2424_1129BCEN2424_1127BCEN2424_1134BCEN2424_1136BCEN2424_1137BCEN2424_1133BCEN2424_1132BCEN2424_1135BCEN2424_1138
BCEN331271 BCEN_0649BCEN_0647BCEN_0654BCEN_0656BCEN_0657BCEN_0653BCEN_0652BCEN_0655BCEN_0658
BBRO257310 BB3750BB3752BB3746BB3744BB3346BB3747BB3748BB3745BB3345
BAMB398577 BAMMC406_1009BAMMC406_1007BAMMC406_1014BAMMC406_1016BAMMC406_1017BAMMC406_1013BAMMC406_1012BAMMC406_1015BAMMC406_1018
BAMB339670 BAMB_1005BAMB_1003BAMB_1010BAMB_1012BAMB_1013BAMB_1009BAMB_1008BAMB_1011BAMB_1014
ASP76114 EBA5465EBA5464EBA5463EBA5539EBA5541EBA5544EBA5536EBA5535EBA5540EBB196
ASP62928 AZO1632AZO1631AZO1630AZO1642AZO1644AZO1645AZO1640AZO1639AZO1643AZO1646
ASP232721 AJS_3272AJS_3274AJS_3267AJS_3265AJS_3263AJS_3269AJS_3270AJS_3266AJS_3262
ASAL382245 ASA_3490ASA_3491ASA_3492ASA_3486ASA_3484ASA_3483ASA_3487ASA_3488ASA_3485
AHYD196024 AHA_0796AHA_0795AHA_0794AHA_0800AHA_0802AHA_0803AHA_0799AHA_0798AHA_0801
AEHR187272 MLG_1341MLG_1339MLG_1347MLG_1349MLG_1350MLG_1345MLG_1344MLG_1348MLG_1351
ABAU360910 BAV1127BAV1125BAV1131BAV1133BAV2459BAV1130BAV1129BAV1132BAV2458
AAVE397945 AAVE_1191AAVE_1189AAVE_1196AAVE_1198AAVE_1199AAVE_1194AAVE_1193AAVE_1197AAVE_1200


Organism features enriched in list (features available for 114 out of the 120 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0004351792
Arrangment:Pairs 0.001761033112
Disease:Bubonic_plague 0.000050266
Disease:Dysentery 0.000050266
Disease:Gastroenteritis 9.217e-61013
Disease:Glanders_and_pneumonia 0.007318733
Disease:Plant_rot 0.007318733
Endospores:No 0.000129625211
GC_Content_Range4:0-40 6.242e-232213
GC_Content_Range4:40-60 6.628e-1276224
GC_Content_Range7:30-40 2.608e-162166
GC_Content_Range7:50-60 1.113e-945107
GC_Content_Range7:60-70 0.005636336134
Genome_Size_Range5:2-4 7.732e-1210197
Genome_Size_Range5:4-6 1.740e-2584184
Genome_Size_Range5:6-10 0.00009782047
Genome_Size_Range9:2-3 1.155e-84120
Genome_Size_Range9:3-4 0.0016252677
Genome_Size_Range9:4-5 2.516e-104396
Genome_Size_Range9:5-6 1.670e-104188
Genome_Size_Range9:6-8 9.362e-61938
Gram_Stain:Gram_Neg 1.194e-18104333
Habitat:Host-associated 0.006811030206
Habitat:Multiple 0.006575445178
Motility:No 1.564e-88151
Motility:Yes 1.345e-1387267
Oxygen_Req:Anaerobic 9.443e-92102
Oxygen_Req:Facultative 8.251e-1474201
Pathogenic_in:Human 0.007184552213
Pathogenic_in:No 0.000030826226
Shape:Coccus 1.074e-6282
Shape:Rod 5.388e-14101347
Shape:Spiral 0.0042646134
Temp._range:Mesophilic 0.0015586103473
Temp._range:Psychrophilic 0.002260969



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 100
Effective number of orgs (counting one per cluster within 468 clusters): 91

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSP64471 ncbi Synechococcus sp. CC93111
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
PTOR263820 ncbi Picrophilus torridus DSM 97900
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
DRAD243230 ncbi Deinococcus radiodurans R11
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CCAV227941 ncbi Chlamydophila caviae GPIC1
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1351
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi1
BBUR224326 ncbi Borrelia burgdorferi B311
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K10
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G7348   EG12341   EG11897   EG10857   EG10832   EG10693   EG10530   EG10529   EG10270   EG10247   
UURE95667
UURE95664 UUR10_0331
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA0120
TTHE262724 TT_C1874
TPEN368408
TKOD69014
TACI273075
STOK273063
SSP64471 GSYN1248
SSOL273057
SMAR399550
SACI330779
RSAL288705 RSAL33209_1384
PTOR263820
PMAR167542 P9515ORF_1252
PMAR167540 PMM1107
PMAR167539 PRO_1089
PISL384616
PINT246198 PIN_A0091
PHOR70601
PFUR186497
PAST100379 PAM625
PARS340102
PAER178306
PABY272844
NPHA348780
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632 MSC_0462
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311 MFL266
MCAP340047 MCAP_0507
MBUR259564
MBAR269797
MART243272 MART0536
MAEO419665
MACE188937
LREU557436 LREU_0738
LMES203120 LEUM_0780
LBRE387344 LVIS_0751
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMAR272569
HBUT415426
DRAD243230 DR_0646
DGEO319795 DGEO_2269
CTRA471473 CTLON_0351
CTRA471472 CTL0355
CSUL444179
CPNE182082 CPB0323
CPNE138677 CPJ0313
CPNE115713 CPN0313
CPNE115711 CP_0445
CMUR243161 TC_0376
CMET456442
CMAQ397948
CKOR374847
CFEL264202 CF0538
CEFF196164 CE1976
CCAV227941 CCA_00469
CABO218497 CAB455
BXEN266265
BTUR314724 BT0705
BLON206672
BHER314723
BGAR290434 BG0727
BBUR224326 BB_0705
AYEL322098 AYWB_110
AURANTIMONAS
ASP1667 ARTH_2651
APER272557
AFUL224325


Organism features enriched in list (features available for 93 out of the 100 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.006119359
Arrangment:Chains 0.0022761692
Arrangment:Singles 0.005771356286
Disease:Pharyngitis 3.229e-788
Disease:bronchitis_and_pneumonitis 3.229e-788
Endospores:No 2.258e-1061211
GC_Content_Range4:60-100 0.005402014145
GC_Content_Range7:0-30 0.00001631947
Genome_Size_Range5:0-2 1.522e-1659155
Genome_Size_Range5:4-6 3.483e-124184
Genome_Size_Range5:6-10 0.0019214147
Genome_Size_Range9:0-1 5.841e-122027
Genome_Size_Range9:1-2 1.075e-639128
Genome_Size_Range9:4-5 0.0000188396
Genome_Size_Range9:5-6 1.141e-6188
Gram_Stain:Gram_Neg 6.942e-928333
Gram_Stain:Gram_Pos 0.000074710150
Habitat:Aquatic 0.00095542591
Habitat:Multiple 4.096e-88178
Habitat:Specialized 7.833e-62153
Optimal_temp.:- 0.000039724257
Optimal_temp.:100 0.003949533
Optimal_temp.:35-40 0.003949533
Optimal_temp.:85 0.000612944
Oxygen_Req:Aerobic 0.001650318185
Oxygen_Req:Anaerobic 7.756e-632102
Pathogenic_in:Human 0.000758921213
Pathogenic_in:No 0.002119548226
Salinity:Extreme_halophilic 0.001421357
Shape:Irregular_coccus 4.057e-111517
Shape:Rod 6.761e-1127347
Shape:Sphere 3.441e-111619
Temp._range:Hyperthermophilic 3.165e-101723
Temp._range:Mesophilic 0.000015960473
Temp._range:Thermophilic 0.00332691235



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 2
Effective number of orgs (counting one per cluster within 468 clusters): 2

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
NOCE323261 ncbi Nitrosococcus oceani ATCC 19707 0.0021656137210
MFLA265072 ncbi Methylobacillus flagellatus KT 0.0053701150210


Names of the homologs of the genes in the group in each of these orgs
  G7348   EG12341   EG11897   EG10857   EG10832   EG10693   EG10530   EG10529   EG10270   EG10247   
NOCE323261 NOC_2464NOC_2465NOC_2466NOC_2458NOC_0794NOC_0795NOC_2460NOC_2461NOC_2457NOC_0796
MFLA265072 MFLA_1002MFLA_1001MFLA_1000MFLA_1007MFLA_1010MFLA_1011MFLA_1005MFLA_1004MFLA_1008MFLA_1012


Organism features enriched in list (features available for 2 out of the 2 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Shape:Ellipse 0.006849312



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120860.6491
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181180.6487
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951040.5832
GLYCOCAT-PWY (glycogen degradation I)2461150.5630
GALACTITOLCAT-PWY (galactitol degradation)73580.5561
ECASYN-PWY (enterobacterial common antigen biosynthesis)191990.5492
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176940.5433
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149840.5277
GLUCARDEG-PWY (D-glucarate degradation I)152830.5091
PWY-5918 (heme biosynthesis I)2721140.5056
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81570.5010
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001180.4905
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251010.4886
PWY-6196 (serine racemization)102640.4879
LIPASYN-PWY (phospholipases)212970.4825
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861140.4812
PWY-4041 (γ-glutamyl cycle)2791120.4769
PWY-5148 (acyl-CoA hydrolysis)2271000.4760
PWY-5913 (TCA cycle variation IV)3011150.4645
GLUCONSUPER-PWY (D-gluconate degradation)229990.4634
PWY-1269 (CMP-KDO biosynthesis I)3251190.4596
PWY-5386 (methylglyoxal degradation I)3051150.4580
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491030.4573
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491030.4573
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212940.4567
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135720.4544
PWY0-981 (taurine degradation IV)106620.4504
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391200.4471
PWY0-1182 (trehalose degradation II (trehalase))70480.4449
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901100.4418
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911100.4401
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961110.4400
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183840.4357
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91550.4319
THREONINE-DEG2-PWY (threonine degradation II)214910.4267
GALACTARDEG-PWY (D-galactarate degradation I)151740.4266
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481190.4260
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001100.4254
GLYOXYLATE-BYPASS (glyoxylate cycle)169790.4252
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50380.4250
PWY-561 (superpathway of glyoxylate cycle)162770.4249
DAPLYSINESYN-PWY (lysine biosynthesis I)3421170.4182
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))191840.4168
GLUTAMINDEG-PWY (glutamine degradation I)191840.4168
TYRFUMCAT-PWY (tyrosine degradation I)184820.4154
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156740.4129
PWY0-901 (selenocysteine biosynthesis I (bacteria))230930.4107
PWY-3162 (tryptophan degradation V (side chain pathway))94540.4082
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112600.4073
LACTOSEUTIL-PWY (lactose degradation II)53380.4055
P601-PWY (D-camphor degradation)95540.4042
P344-PWY (acrylonitrile degradation)210870.4008



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12341   EG11897   EG10857   EG10832   EG10693   EG10530   EG10529   EG10270   EG10247   
G73480.9996250.9997730.9996160.9995570.9994520.9996560.999690.9996020.999296
EG123410.9996520.9992960.9992040.9991070.9993360.9993760.9992730.998895
EG118970.9995320.9995430.9993320.9995540.9996040.999520.999107
EG108570.9997880.9997640.9999270.999750.9999290.999616
EG108320.9997870.9997370.999720.9998850.999592
EG106930.9997150.9994510.9997850.999859
EG105300.9998620.9998870.999708
EG105290.9998080.999066
EG102700.999643
EG10247



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PAIRWISE BLAST SCORES:

  G7348   EG12341   EG11897   EG10857   EG10832   EG10693   EG10530   EG10529   EG10270   EG10247   
G73480.0f0---------
EG12341-0.0f0--------
EG11897--0.0f0-------
EG10857---0.0f0------
EG10832----0.0f0-----
EG10693-----0.0f0----
EG10530------0.0f0---
EG10529-------0.0f0--
EG10270--------0.0f0-
EG10247---------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10247 EG10270 EG10529 EG10530 EG10693 EG10832 EG10857 EG11897 EG12341 G7348 (centered at EG10530)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7348   EG12341   EG11897   EG10857   EG10832   EG10693   EG10530   EG10529   EG10270   EG10247   
140/623101/623287/623414/623219/623312/623368/623416/623406/623385/623
AAEO224324:0:Tyes-----3360-741-
AAUR290340:2:Tyes--0------254
AAVE397945:0:Tyes2-0791054811
ABAC204669:0:Tyes--2468-959-3638033164314
ABAU360910:0:Tyes2-06813415471340
ABOR393595:0:Tyes9-11310562-
ABUT367737:0:Tyes---1391-429415259-0
ACAU438753:0:Tyes--21981771-17681770017721769
ACEL351607:0:Tyes--5720------
ACRY349163:8:Tyes---1-2388010262282
ADEH290397:0:Tyes--2800157-01221211601
AEHR187272:0:Tyes2-08101165912
AFER243159:0:Tyes--104216730
AHYD196024:0:Tyes210689547-
ALAI441768:0:Tyes-------0269661
AMAR234826:0:Tyes---462-0199--51
AMAR329726:9:Tyes--835--021382481--
AMET293826:0:Tyes--3670264--2922661333
ANAE240017:0:Tyes--20480------
AORE350688:0:Tyes--025450--26491092
APHA212042:0:Tyes---476-137149--0
APLE416269:0:Tyes-10148150-147146149-
APLE434271:0:Tno-10108110-107106109-
ASAL382245:5:Tyes789310452-
ASP1667:3:Tyes--0-------
ASP232721:2:Tyes10-125317840
ASP62928:0:Tyes2101214151091316
ASP62977:0:Tyes---310562-
ASP76114:2:Tyes21043454641404447
AVAR240292:3:Tyes--4509--227849404091-
AYEL322098:4:Tyes--------0-
BABO262698:0:Tno-------0--
BABO262698:1:Tno-----6801-40
BAFZ390236:2:Fyes---44----0-
BAMB339670:3:Tno2-0791065811
BAMB398577:3:Tno2-0791065811
BAMY326423:0:Tyes--01349---21532131270
BANT260799:0:Tno---3496---401239930
BANT261594:2:Tno---3418---395539350
BANT568206:2:Tyes---325---417741580
BANT592021:2:Tno---3625---416641470
BAPH198804:0:Tyes---2--3410
BAPH372461:0:Tyes---2--34-0
BBAC264462:0:Tyes--01107-10989997--
BBAC360095:0:Tyes---244151788-0
BBRO257310:0:Tyes413-41540940714104114080
BBUR224326:21:Fno---0------
BCAN483179:0:Tno-------0--
BCAN483179:1:Tno-----7211-40
BCEN331271:2:Tno2-0791065811
BCEN331272:3:Tyes2-0791065811
BCER226900:1:Tyes---3510--861397239520
BCER288681:0:Tno---3425---388138620
BCER315749:1:Tyes---2135--2125267026510
BCER405917:1:Tyes---3415---390538850
BCER572264:1:Tno---3538---400839890
BCIC186490:0:Tyes---3-14520
BCLA66692:0:Tyes--020861465--14371463558
BFRA272559:1:Tyes--3289--34980-3661-
BFRA295405:0:Tno--3597--38350-3964-
BGAR290434:2:Fyes---0------
BHAL272558:0:Tyes--02270---11191144255
BHEN283166:0:Tyes---4194219594180-417
BJAP224911:0:Fyes--02517-25202518562525162519
BLIC279010:0:Tyes--0-----2444-
BMAL243160:1:Tno2-0791065811
BMAL320388:1:Tno9-114215630
BMAL320389:1:Tyes9-114215630
BMEL224914:0:Tno-------0--
BMEL224914:1:Tno-----0685-683686
BMEL359391:0:Tno-------0--
BMEL359391:1:Tno-----6551-40
BOVI236:0:Tyes-------0--
BOVI236:1:Tyes-----6201-40
BPAR257311:0:Tno1455-14571451144901452145314501
BPER257313:0:Tyes331-33332732503283293261
BPET94624:0:Tyes2-06815165471515
BPSE272560:1:Tyes9-114215630
BPSE320372:1:Tno10-124215630
BPSE320373:1:Tno8-10-214530
BPUM315750:0:Tyes--01358--120321392117271
BQUI283165:0:Tyes---3273297103260-325
BSP107806:2:Tyes---2--3410
BSP36773:2:Tyes2-0791065811
BSP376:0:Tyes---3556355335593557035553558
BSUB:0:Tyes--015142484--25092486296
BSUI204722:0:Tyes-------0--
BSUI204722:1:Tyes-----7091-40
BSUI470137:0:Tno-------0--
BSUI470137:1:Tno-----7261--0
BTHA271848:1:Tno2-0791065811
BTHE226186:0:Tyes--1345--6100-525-
BTHU281309:1:Tno---3333---379737780
BTHU412694:1:Tno---3123---353935220
BTRI382640:1:Tyes---63163313256300632629
BTUR314724:0:Fyes---0------
BVIE269482:7:Tyes2-0791065811
BWEI315730:4:Tyes--14773424--3414391338940
CABO218497:0:Tyes---------0
CACE272562:1:Tyes--27881253--1265-8050
CAULO:0:Tyes---5395435365380-537
CBEI290402:0:Tyes---343--30310203975
CBLO203907:0:Tyes---2-134-0
CBLO291272:0:Tno---2-134-0
CBOT36826:1:Tno---11503-0522504951
CBOT441770:0:Tyes---12--06055871101
CBOT441771:0:Tno---11--0555537989
CBOT441772:1:Tno---0---4904721007
CBOT498213:1:Tno---0---6015831043
CBOT508765:1:Tyes---350---0192459
CBOT515621:2:Tyes---11--0-525988
CBOT536232:0:Tno---12--06005821064
CBUR227377:1:Tyes---97010118-
CBUR360115:1:Tno---750896-
CBUR434922:2:Tno---249103-
CCAV227941:1:Tyes---------0
CCHL340177:0:Tyes--16661437-258265--0
CCON360104:2:Tyes---0--263287--
CCUR360105:0:Tyes---1359--0856--
CDES477974:0:Tyes--1633164--181157215560
CDIF272563:1:Tyes---0---124012092247
CDIP257309:0:Tyes--0828------
CEFF196164:0:Fyes---0------
CFEL264202:1:Tyes---------0
CFET360106:0:Tyes---1040-0491778-241
CGLU196627:0:Tyes---0221-----
CHOM360107:1:Tyes---821-9132640-649
CHUT269798:0:Tyes--0--21721349-1846-
CHYD246194:0:Tyes---1009--926020248
CJAP155077:0:Tyes4094104117787760780781777-
CJEI306537:0:Tyes--4340------
CJEJ192222:0:Tyes---765-3790173--
CJEJ195099:0:Tno---832-4150220--
CJEJ354242:2:Tyes---731-3690169--
CJEJ360109:0:Tyes---1417-0496255--
CJEJ407148:0:Tno---752-3900175--
CKLU431943:1:Tyes------482-02631
CMIC31964:2:Tyes--1496225-----0
CMIC443906:2:Tyes--039-----1287
CMUR243161:1:Tyes---------0
CNOV386415:0:Tyes---9481207-78122612080
CPEL335992:0:Tyes-----6156130-614
CPER195102:1:Tyes----1735-310175917360
CPER195103:0:Tno----1950-285197419510
CPER289380:3:Tyes----1680--170416810
CPHY357809:0:Tyes---1777--220916480255
CPNE115711:1:Tyes---------0
CPNE115713:0:Tno---------0
CPNE138677:0:Tno---------0
CPNE182082:0:Tno---------0
CPRO264201:0:Fyes---0-----1469
CPSY167879:0:Tyes8910310452-
CRUT413404:0:Tyes---7-515064
CSAL290398:0:Tyes-10578436-
CSP501479:6:Fyes---1--0-4-
CSP501479:7:Fyes-----1---0
CSP78:2:Tyes--1140563-5595620-560
CTEP194439:0:Tyes--3101760-01100--1579
CTET212717:0:Tyes---0--97277111166
CTRA471472:0:Tyes---------0
CTRA471473:0:Tno---------0
CVES412965:0:Tyes---7-514064
CVIO243365:0:Tyes2108111265914
DARO159087:0:Tyes--0791054811
DDES207559:0:Tyes---0-345112811291920346
DETH243164:0:Tyes---552-----0
DGEO319795:1:Tyes--0-------
DHAF138119:0:Tyes--183765--05505181441
DNOD246195:0:Tyes---1--230-
DOLE96561:0:Tyes---1000-2760-613-
DPSY177439:2:Tyes---1172-15430-1628-
DRAD243230:3:Tyes--------0-
DRED349161:0:Tyes--2190413--439417811
DSHI398580:5:Tyes---4-03-52
DSP216389:0:Tyes---509-----0
DSP255470:0:Tno---526-----0
DVUL882:1:Tyes---1382-184864864701849
ECAN269484:0:Tyes---577-089--52
ECAR218491:0:Tyes89104215630
ECHA205920:0:Tyes---344-1080--47
ECOL199310:0:Tno89104215630
ECOL316407:0:Tno89104215630
ECOL331111:6:Tno89104215630
ECOL362663:0:Tno89104215630
ECOL364106:1:Tno910114216730
ECOL405955:2:Tyes89104215630
ECOL409438:6:Tyes89104215630
ECOL413997:0:Tno89104215630
ECOL439855:4:Tno89104215630
ECOL469008:0:Tno21068954710
ECOL481805:0:Tno21068954710
ECOL585034:0:Tno1011124216730
ECOL585035:0:Tno89104215630
ECOL585055:0:Tno89104215630
ECOL585056:2:Tno89104215630
ECOL585057:0:Tno910114216730
ECOL585397:0:Tno89104215630
ECOL83334:0:Tno89104215630
ECOLI:0:Tno89104215630
ECOO157:0:Tno910114216730
EFAE226185:3:Tyes---21251474--142314750
EFER585054:1:Tyes21068954710
ELIT314225:0:Tyes-----14359284330
ERUM254945:0:Tyes---575-089--53
ERUM302409:0:Tno---572-091--55
ESP42895:1:Tyes89104215630
FALN326424:0:Tyes--47714579-----0
FJOH376686:0:Tyes--935--15050-1696-
FMAG334413:1:Tyes---112----0-
FNOD381764:0:Tyes--50433----01106
FNUC190304:0:Tyes---0---625-1190
FPHI484022:1:Tyes---12331469-12327210-
FRANT:0:Tno---37853-3794850-
FSP106370:0:Tyes--31392970653----0
FSP1855:0:Tyes--0-1150-----
FSUC59374:0:Tyes---139515650994---
FTUL351581:0:Tno---441593-4400645-
FTUL393011:0:Tno---408550-4070601-
FTUL393115:0:Tyes---36252-3634690-
FTUL401614:0:Tyes---13441127-134501029-
FTUL418136:0:Tno---1311-01305717-
FTUL458234:0:Tno---435587-4340640-
GBET391165:0:Tyes-----10741517-0
GFOR411154:0:Tyes--311--0-31082774-
GKAU235909:1:Tyes--01084--10952420240078
GMET269799:1:Tyes---558118012510556124
GOXY290633:5:Tyes-----19891557015591556
GSUL243231:0:Tyes---16430122068668516411219
GTHE420246:1:Tyes--0887--17912255223653
GURA351605:0:Tyes--03039-26262402240130372220
GVIO251221:0:Tyes--3526--019412692-3953
HACI382638:1:Tyes---750-01295---
HARS204773:0:Tyes10-124216730
HAUR316274:2:Tyes--01209---2818-936
HCHE349521:0:Tyes159615951594160216040160015991603-
HDUC233412:0:Tyes-10362360-363364361-
HHAL349124:0:Tyes8-104215630
HHEP235279:0:Tyes---616-78113000--
HINF281310:0:Tyes6476486491396-230-
HINF374930:0:Tyes1347134813493180-317316--
HINF71421:0:Tno5985975961305-230-
HMOD498761:0:Tyes--013151623-133516021621850
HNEP81032:0:Tyes-----729-0-730
HPY:0:Tno---85-10140---
HPYL357544:1:Tyes---0-907----
HPYL85963:0:Tno---0-874----
HSOM205914:1:Tyes15121511151011520-115311541151-
HSOM228400:0:Tno0124381596-437436439-
ILOI283942:0:Tyes89104215630
JSP290400:1:Tyes---6-05294884
JSP375286:0:Tyes2-08101165912
KPNE272620:2:Tyes89104215630
KRAD266940:2:Fyes--1680-----660
LACI272621:0:Tyes--------9230
LBIF355278:2:Tyes--1618--0302--2081
LBIF456481:2:Tno--1663--0309--2142
LBOR355276:1:Tyes--032-914971741-7
LBOR355277:1:Tno--01081-725782549-7
LBRE387344:2:Tyes--------0-
LCAS321967:1:Tyes-------4701021
LCHO395495:0:Tyes9-114216730
LDEL321956:0:Tyes--------7260
LDEL390333:0:Tyes--------6610
LGAS324831:0:Tyes--------8160
LHEL405566:0:Tyes--------8520
LINN272626:1:Tno---1061---6306150
LINT189518:0:Tyes---0------
LINT189518:1:Tyes--0--3111594685-2111
LINT267671:0:Tno---0------
LINT267671:1:Tno--1611--13743841140-0
LINT363253:3:Tyes---0--35214973160
LJOH257314:0:Tyes--------9050
LLAC272622:5:Tyes---432---7620476
LLAC272623:0:Tyes---451---7570492
LMES203120:1:Tyes--------0-
LMON169963:0:Tno---953---5995820
LMON265669:0:Tyes---919---5905730
LPLA220668:0:Tyes-------128612460
LPNE272624:0:Tno--634925149279280-
LPNE297245:1:Fno--468850128528530-
LPNE297246:1:Fyes--531833148358360-
LPNE400673:0:Tno--0305131613133073081317-
LREU557436:0:Tyes--------0-
LSAK314315:0:Tyes-------4150751
LSPH444177:1:Tyes--292502071-10218920722673
LWEL386043:0:Tyes---957--4196256100
LXYL281090:0:Tyes--8070-----878
MABS561007:1:Tyes--02018-----268
MAER449447:0:Tyes--02892-2122209537291431-
MAQU351348:2:Tyes18-20310562-
MART243272:0:Tyes--------0-
MAVI243243:0:Tyes--3800------
MBOV233413:0:Tno--3050------
MBOV410289:0:Tno--4010------
MCAP243233:0:Tyes8-1020192451-
MCAP340047:0:Tyes--------0-
MEXT419610:0:Tyes---1226012231225-12271224
MFLA265072:0:Tyes2107101154812
MFLO265311:0:Tyes--------0-
MGIL350054:3:Tyes--5000------
MLEP272631:0:Tyes---283-----0
MLOT266835:2:Tyes--5328--05034239550365033
MMAG342108:0:Tyes---4-03160852
MMAR394221:0:Tyes---1419-1421-0-1420
MMYC272632:0:Tyes--------0-
MPET420662:1:Tyes2-08101165912
MSME246196:0:Tyes--0499-----2817
MSP164756:1:Tno--0572-----2288
MSP164757:0:Tno--0507-----2248
MSP189918:2:Tyes--0589-----2330
MSP266779:3:Tyes--303--5571314830
MSP400668:0:Tyes2-01461481765145144147149
MSP409:2:Tyes--59756153-61566154061526155
MSUC221988:0:Tyes2056205520541310-133134130-
MTBCDC:0:Tno--3440------
MTBRV:0:Tno--3020------
MTHE264732:0:Tyes--1232---3760191547
MTUB336982:0:Tno--3080------
MTUB419947:0:Tyes--3190------
MVAN350058:0:Tyes--0391------
MXAN246197:0:Tyes--3153241-81610244-
NARO279238:0:Tyes-----190517009030
NEUR228410:0:Tyes--103-15620
NEUT335283:2:Tyes--103-15620
NFAR247156:2:Tyes--1095------0
NGON242231:0:Tyes---011371136777811135
NHAM323097:2:Tyes--01963-1966196421819621965
NMEN122586:0:Tno---234013133142355
NMEN122587:0:Tyes---010941093798011089
NMEN272831:0:Tno---091591477781911
NMEN374833:0:Tno---010401039868711036
NMUL323848:3:Tyes2-07111365814
NOCE323261:1:Tyes1642164316441636011638163916352
NSEN222891:0:Tyes---572-0449--616
NSP103690:6:Tyes--3090--027832311699-
NSP35761:1:Tyes--379823911031----0
NSP387092:0:Tyes---0-893516234--
NWIN323098:0:Tyes---1597-16001598015961599
OANT439375:5:Tyes--101--4791314013121315
OCAR504832:0:Tyes--01589-15861588332215901587
OIHE221109:0:Tyes--01332--134417841763391
OTSU357244:0:Fyes------421--0
PACN267747:0:Tyes--0------526
PAER208963:0:Tyes91011310562-
PAER208964:0:Tno21081011659-
PARC259536:0:Tyes---356104-
PAST100379:0:Tyes--------0-
PATL342610:0:Tyes5671561560230559
PCAR338963:0:Tyes--2547809040910271028811410
PCRY335284:1:Tyes---356104-
PDIS435591:0:Tyes--1090--01296-883-
PENT384676:0:Tyes7-9310452-
PFLU205922:0:Tyes375374373245103-
PFLU216595:1:Tyes397396395245103-
PFLU220664:0:Tyes377376375245103-
PGIN242619:0:Tyes-----01186-1312-
PHAL326442:1:Tyes210689547-
PING357804:0:Tyes210554556557553552555-
PINT246198:1:Tyes--------0-
PLUM243265:0:Fyes89104215630
PLUT319225:0:Tyes--1436--1751170--0
PMAR146891:0:Tyes-----740-0--
PMAR167539:0:Tyes-----0----
PMAR167540:0:Tyes-----0----
PMAR167542:0:Tyes-----0----
PMAR167546:0:Tyes-----778-0--
PMAR167555:0:Tyes-----1004-0--
PMAR59920:0:Tno-----0-1139--
PMAR74546:0:Tyes-----7091930--
PMAR74547:0:Tyes-----844-0--
PMAR93060:0:Tyes-----7531930--
PMEN399739:0:Tyes2-081011659-
PMOB403833:0:Tyes--1275-----0709
PMUL272843:1:Tyes17271728172911807-230-
PNAP365044:8:Tyes9-114216730
PPEN278197:0:Tyes--------0422
PPRO298386:2:Tyes89104215630
PPUT160488:0:Tno2-0689547-
PPUT351746:0:Tyes7-9310452-
PPUT76869:0:Tno7-9310452-
PRUM264731:0:Tyes------0-483-
PSP117:0:Tyes--4459--0----
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