CANDIDATE ID: 147

CANDIDATE ID: 147

NUMBER OF GENES: 10
AVERAGE SCORE:    9.9942607e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6092 (ispU) (b0174)
   Products of gene:
     - UPPSYN-MONOMER (subunit of undecaprenyl diphosphate synthase)
     - UPPSYN-CPLX (undecaprenyl diphosphate synthase)
       Reactions:
        (2E,6E)-farnesyl diphosphate + 8 isopentenyl diphosphate  ->  di-trans,poly-cis-undecaprenyl diphosphate + 8 diphosphate
         In pathways
         POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))
         PWY-5785 (di-trans,poly-cis-undecaprenyl phosphate biosynthesis)

- EG12715 (dxr) (b0173)
   Products of gene:
     - DXPREDISOM-MONOMER (Dxr)
     - DXPREDISOM-CPLX (1-deoxy-D-xylulose 5-phosphate reductoisomerase)
       Reactions:
        2-C-methyl-D-erythritol-4-phosphate + NADP+  =  1-deoxy-D-xylulose 5-phosphate + NADPH + H+
         In pathways
         PWY-5121 (PWY-5121)
         PWY-6270 (PWY-6270)
         NONMEVIPP-PWY (methylerythritol phosphate pathway)

- EG12336 (yaeH) (b0163)
   Products of gene:
     - EG12336-MONOMER (conserved protein)

- EG11539 (pyrH) (b0171)
   Products of gene:
     - UMPKI-MONOMER (PyrH)
     - UMPKI-CPLX (uridylate kinase)
       Reactions:
        ATP + uridine-5'-phosphate  =  ADP + UDP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         PWY0-162 (pyrimidine ribonucleotides de novo biosynthesis)
         PWY-5687 (pyrimidine ribonucleotides interconversion)
         P1-PWY (P1-PWY)

- EG11411 (glnD) (b0167)
   Products of gene:
     - GLND-MONOMER (uridylyltransferase / uridylyl-removing enzyme)
       Reactions:
        GlnK + UTP  ->  diphosphate + uridylyl-[GlnK]
        a glutamine synthetase PII + UTP  ->  uridylyl-glutamine synthase PII + diphosphate
        PII-UMP  ->  PII + uridine-5'-phosphate

- EG11033 (tsf) (b0170)
   Products of gene:
     - EG11033-MONOMER (protein chain elongation factor EF-Ts)

- EG10901 (rpsB) (b0169)
   Products of gene:
     - EG10901-MONOMER (30S ribosomal subunit protein S2)
       Regulatees:
        TU00345 (rpsB-tsf)
     - CPLX0-3953 (30S ribosomal subunit)
       Regulatees:
        TU00345 (rpsB-tsf)
     - CPLX0-3964 (ribosome)

- EG10570 (map) (b0168)
   Products of gene:
     - EG10570-MONOMER (methionine aminopeptidase)
       Reactions:
        EC# 3.4.11.18

- EG10335 (frr) (b0172)
   Products of gene:
     - EG10335-MONOMER (ribosome recycling factor)

- EG10207 (dapD) (b0166)
   Products of gene:
     - MONOMER0-2001 (tetrahydrodipicolinate succinylase subunit)
     - CPLX0-3181 (tetrahydrodipicolinate succinylase)
       Reactions:
        tetrahydrodipicolinate + succinyl-CoA + H2O  =  N-succinyl-2-amino-6-ketopimelate + coenzyme A
         In pathways
         PWY0-781 (aspartate superpathway)
         P4-PWY (superpathway of lysine, threonine and methionine biosynthesis I)
         DAPLYSINESYN-PWY (lysine biosynthesis I)



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 150
Effective number of orgs (counting one per cluster within 468 clusters): 97

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175810
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295310
YPES386656 ncbi Yersinia pestis Pestoides F10
YPES377628 ncbi Yersinia pestis Nepal51610
YPES360102 ncbi Yersinia pestis Antiqua10
YPES349746 ncbi Yersinia pestis Angola10
YPES214092 ncbi Yersinia pestis CO9210
YPES187410 ncbi Yersinia pestis KIM 1010
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808110
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A9
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110189
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103319
XCAM487884 Xanthomonas campestris pv. paulliniae9
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-109
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80049
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339139
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3069
VFIS312309 ncbi Vibrio fischeri ES1149
VEIS391735 ncbi Verminephrobacter eiseniae EF01-29
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252599
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT210
SSP94122 ncbi Shewanella sp. ANA-39
SSON300269 ncbi Shigella sonnei Ss04610
SSED425104 ncbi Shewanella sediminis HAW-EB39
SPRO399741 ncbi Serratia proteamaculans 56810
SPEA398579 ncbi Shewanella pealeana ATCC 7003459
SONE211586 ncbi Shewanella oneidensis MR-19
SMEL266834 ncbi Sinorhizobium meliloti 10219
SMED366394 ncbi Sinorhizobium medicae WSM4199
SLOI323850 ncbi Shewanella loihica PV-49
SHIGELLA ncbi Shigella flexneri 2a str. 2457T10
SHAL458817 ncbi Shewanella halifaxensis HAW-EB49
SGLO343509 ncbi Sodalis glossinidius morsitans10
SFLE373384 ncbi Shigella flexneri 5 str. 840110
SFLE198214 ncbi Shigella flexneri 2a str. 30110
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47610
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915010
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1810
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty210
SDYS300267 ncbi Shigella dysenteriae Sd19710
SDEN318161 ncbi Shewanella denitrificans OS2179
SBOY300268 ncbi Shigella boydii Sb22710
SBAL402882 ncbi Shewanella baltica OS1859
SBAL399599 ncbi Shewanella baltica OS1959
RSOL267608 ncbi Ralstonia solanacearum GMI10009
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111709
RMET266264 ncbi Ralstonia metallidurans CH349
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38419
RFER338969 ncbi Rhodoferax ferrireducens T1189
REUT381666 ncbi Ralstonia eutropha H169
REUT264198 ncbi Ralstonia eutropha JMP1349
PSP56811 Psychrobacter sp.9
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-19
PSP296591 ncbi Polaromonas sp. JS6669
PPRO298386 ncbi Photobacterium profundum SS99
PNAP365044 ncbi Polaromonas naphthalenivorans CJ29
PMUL272843 ncbi Pasteurella multocida multocida Pm709
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO110
PING357804 ncbi Psychromonas ingrahamii 379
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1259
PCRY335284 ncbi Psychrobacter cryohalolentis K59
PARC259536 ncbi Psychrobacter arcticus 273-49
NOCE323261 ncbi Nitrosococcus oceani ATCC 197079
NMUL323848 ncbi Nitrosospira multiformis ATCC 251969
NMEN374833 ncbi Neisseria meningitidis 0534429
NMEN272831 ncbi Neisseria meningitidis FAM189
NMEN122587 ncbi Neisseria meningitidis Z24919
NMEN122586 ncbi Neisseria meningitidis MC589
NHAM323097 ncbi Nitrobacter hamburgensis X149
NGON242231 ncbi Neisseria gonorrhoeae FA 10909
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E9
MSP400668 ncbi Marinomonas sp. MWYL19
MPET420662 ncbi Methylibium petroleiphilum PM19
MMAR394221 ncbi Maricaulis maris MCS109
MFLA265072 ncbi Methylobacillus flagellatus KT9
MCAP243233 ncbi Methylococcus capsulatus Bath9
LCHO395495 ncbi Leptothrix cholodnii SP-69
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857810
JSP375286 ncbi Janthinobacterium sp. Marseille9
ILOI283942 ncbi Idiomarina loihiensis L2TR9
HSOM228400 ncbi Haemophilus somnus 23369
HSOM205914 ncbi Haemophilus somnus 129PT9
HINF71421 ncbi Haemophilus influenzae Rd KW209
HINF374930 ncbi Haemophilus influenzae PittEE9
HINF281310 ncbi Haemophilus influenzae 86-028NP9
HHAL349124 ncbi Halorhodospira halophila SL19
HCHE349521 ncbi Hahella chejuensis KCTC 23969
HARS204773 ncbi Herminiimonas arsenicoxydans9
GOXY290633 ncbi Gluconobacter oxydans 621H9
ESP42895 Enterobacter sp.10
EFER585054 ncbi Escherichia fergusonii ATCC 3546910
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H710
ECOL585397 ncbi Escherichia coli ED1a10
ECOL585057 ncbi Escherichia coli IAI3910
ECOL585056 ncbi Escherichia coli UMN02610
ECOL585055 ncbi Escherichia coli 5598910
ECOL585035 ncbi Escherichia coli S8810
ECOL585034 ncbi Escherichia coli IAI110
ECOL481805 ncbi Escherichia coli ATCC 873910
ECOL469008 ncbi Escherichia coli BL21(DE3)10
ECOL439855 ncbi Escherichia coli SMS-3-510
ECOL413997 ncbi Escherichia coli B str. REL60610
ECOL409438 ncbi Escherichia coli SE1110
ECOL405955 ncbi Escherichia coli APEC O19
ECOL364106 ncbi Escherichia coli UTI8910
ECOL362663 ncbi Escherichia coli 53610
ECOL331111 ncbi Escherichia coli E24377A10
ECOL316407 ncbi Escherichia coli K-12 substr. W311010
ECOL199310 ncbi Escherichia coli CFT0739
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104310
DSHI398580 ncbi Dinoroseobacter shibae DFL 129
DARO159087 ncbi Dechloromonas aromatica RCB9
CVIO243365 ncbi Chromobacterium violaceum ATCC 124729
CSP78 Caulobacter sp.9
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)9
CPSY167879 ncbi Colwellia psychrerythraea 34H9
CAULO ncbi Caulobacter crescentus CB159
BVIE269482 ncbi Burkholderia vietnamiensis G49
BTHA271848 ncbi Burkholderia thailandensis E2649
BSP376 Bradyrhizobium sp.9
BSP36773 Burkholderia sp.9
BPSE320373 ncbi Burkholderia pseudomallei 6689
BPSE320372 ncbi Burkholderia pseudomallei 1710b9
BPSE272560 ncbi Burkholderia pseudomallei K962439
BPET94624 Bordetella petrii9
BPER257313 ncbi Bordetella pertussis Tohama I9
BPAR257311 ncbi Bordetella parapertussis 128229
BMAL320389 ncbi Burkholderia mallei NCTC 102479
BMAL320388 ncbi Burkholderia mallei SAVP19
BMAL243160 ncbi Burkholderia mallei ATCC 233449
BCEN331272 ncbi Burkholderia cenocepacia HI24249
BCEN331271 ncbi Burkholderia cenocepacia AU 10549
BBRO257310 ncbi Bordetella bronchiseptica RB509
BAMB398577 ncbi Burkholderia ambifaria MC40-69
BAMB339670 ncbi Burkholderia ambifaria AMMD9
ASP76114 ncbi Aromatoleum aromaticum EbN19
ASP62977 ncbi Acinetobacter sp. ADP19
ASP62928 ncbi Azoarcus sp. BH729
ASP232721 ncbi Acidovorax sp. JS429
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44910
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL039
APLE416269 ncbi Actinobacillus pleuropneumoniae L209
AHYD196024 Aeromonas hydrophila dhakensis10
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232709
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-19
ACRY349163 ncbi Acidiphilium cryptum JF-59
ABAU360910 ncbi Bordetella avium 197N9
AAVE397945 ncbi Acidovorax citrulli AAC00-19


Names of the homologs of the genes in the group in each of these orgs
  G6092   EG12715   EG12336   EG11539   EG11411   EG11033   EG10901   EG10570   EG10335   EG10207   
YPSE349747 YPSIP31758_1018YPSIP31758_1017YPSIP31758_1009YPSIP31758_1015YPSIP31758_1011YPSIP31758_1014YPSIP31758_1013YPSIP31758_1012YPSIP31758_1016YPSIP31758_1010
YPSE273123 YPTB2998YPTB2999YPTB3007YPTB3001YPTB3005YPTB3002YPTB3003YPTB3004YPTB3000YPTB3006
YPES386656 YPDSF_1663YPDSF_1664YPDSF_1673YPDSF_1666YPDSF_1671YPDSF_1668YPDSF_1669YPDSF_1670YPDSF_1665YPDSF_1672
YPES377628 YPN_2951YPN_2952YPN_2962YPN_2954YPN_2959YPN_2956YPN_2957YPN_2958YPN_2953YPN_2960
YPES360102 YPA_0525YPA_0524YPA_0514YPA_0522YPA_0516YPA_0520YPA_0518YPA_0517YPA_0523YPA_0515
YPES349746 YPANGOLA_A3430YPANGOLA_A3431YPANGOLA_A3439YPANGOLA_A3433YPANGOLA_A3437YPANGOLA_A3434YPANGOLA_A3435YPANGOLA_A0935YPANGOLA_A3432YPANGOLA_A3438
YPES214092 YPO1049YPO1048YPO1040YPO1046YPO1042YPO1045YPO1044YPO1043YPO1047YPO1041
YPES187410 Y3130Y3131Y3141Y3134Y3139Y3135Y3137Y3138Y3133Y3140
YENT393305 YE3279YE3280YE3288YE3282YE3286YE3283YE3284YE3285YE3281YE3287
XORY360094 XOOORF_3030XOOORF_3032XOOORF_3028XOOORF_3017XOOORF_3026XOOORF_3025XOOORF_3018XOOORF_3029XOOORF_3016
XORY342109 XOO1862XOO1860XOO1864XOO1875XOO1866XOO1867XOO1874XOO1863XOO1876
XORY291331 XOO1972XOO1970XOO1974XOO1984XOO1976XOO1977XOO1983XOO1973XOO1985
XCAM487884 XCC-B100_2927XCC-B100_2929XCC-B100_2925XCC-B100_2914XCC-B100_2923XCC-B100_2922XCC-B100_2915XCC-B100_2926XCC-B100_2913
XCAM316273 XCAORF_1636XCAORF_1634XCAORF_1638XCAORF_1650XCAORF_1641XCAORF_1642XCAORF_1649XCAORF_1637XCAORF_1651
XCAM314565 XC_2869XC_2871XC_2867XC_2855XC_2864XC_2863XC_2856XC_2868XC_2854
XCAM190485 XCC1369XCC1367XCC1371XCC1383XCC1374XCC1375XCC1382XCC1370XCC1384
XAXO190486 XAC1417XAC1415XAC1419XAC1429XAC1421XAC1422XAC1428XAC1418XAC1430
VFIS312309 VF1958VF1956VF1965VF1960VF1964VF1961VF1962VF1963VF1959
VEIS391735 VEIS_1442VEIS_1444VEIS_1440VEIS_3611VEIS_1439VEIS_1438VEIS_3610VEIS_1441VEIS_0275
TDEN292415 TBD_0789TBD_0791TBD_0787TBD_0783TBD_0786TBD_0785TBD_0784TBD_0788TBD_1220
STYP99287 STM0221STM0220STM0211STM0218STM0214STM0217STM0216STM0215STM0219STM0213
SSP94122 SHEWANA3_2811SHEWANA3_2809SHEWANA3_2813SHEWANA3_2817SHEWANA3_2814SHEWANA3_2815SHEWANA3_2816SHEWANA3_2812SHEWANA3_2818
SSON300269 SSO_0186SSO_0185SSO_0176SSO_0183SSO_0179SSO_0182SSO_0181SSO_0180SSO_0184SSO_0178
SSED425104 SSED_3157SSED_3155SSED_3159SSED_3746SSED_3160SSED_3161SSED_3162SSED_3158SSED_3164
SPRO399741 SPRO_3785SPRO_3786SPRO_3794SPRO_3788SPRO_3792SPRO_3789SPRO_3790SPRO_3791SPRO_3787SPRO_3793
SPEA398579 SPEA_2881SPEA_2879SPEA_2883SPEA_2887SPEA_2884SPEA_2885SPEA_2886SPEA_2882SPEA_2888
SONE211586 SO_1633SO_1635SO_1631SO_1626SO_1630SO_1629SO_1627SO_1632SO_1625
SMEL266834 SMC02097SMC03105SMC02099SMC01124SMC02100SMC02101SMC00298SMC02098SMC01732
SMED366394 SMED_1135SMED_2879SMED_1133SMED_0031SMED_1132SMED_1131SMED_1458SMED_1134SMED_0069
SLOI323850 SHEW_2631SHEW_2629SHEW_2633SHEW_2637SHEW_2634SHEW_2635SHEW_2636SHEW_2632SHEW_2638
SHIGELLA YAESYAEMYAEHPYRHGLNDTSFRPSBMAPFRRDAPD
SHAL458817 SHAL_2977SHAL_2975SHAL_2979SHAL_2983SHAL_2980SHAL_2981SHAL_2982SHAL_2978SHAL_2984
SGLO343509 SG1938SG1939SG1947SG1941SG1945SG1942SG1943SG1944SG1940SG1946
SFLE373384 SFV_0157SFV_0156SFV_0148SFV_0154SFV_0150SFV_0153SFV_0152SFV_0151SFV_0155SFV_0149
SFLE198214 AAN41826.1AAN41825.1AAN41817.1AAN41823.1AAN41819.1AAN41822.1AAN41821.1AAN41820.1AAN41824.1AAN41818.1
SENT454169 SEHA_C0259SEHA_C0258SEHA_C0248SEHA_C0256SEHA_C0251SEHA_C0255SEHA_C0254SEHA_C0252SEHA_C0257SEHA_C0250
SENT321314 SCH_0221SCH_0220SCH_0211SCH_0218SCH_0214SCH_0217SCH_0216SCH_0215SCH_0219SCH_0213
SENT295319 SPA0228SPA0227SPA0217SPA0225SPA0220SPA0224SPA0223SPA0221SPA0226SPA0219
SENT220341 STY0244STY0243STY0233STY0241STY0237STY0240STY0239STY0238STY0242STY0236
SENT209261 T0222T0221T0212T0219T0215T0218T0217T0216T0220T0214
SDYS300267 SDY_0190SDY_0189SDY_0181SDY_0187SDY_0183SDY_0186SDY_0185SDY_0184SDY_0188SDY_0182
SDEN318161 SDEN_1558SDEN_1560SDEN_1556SDEN_1552SDEN_1555SDEN_1554SDEN_1553SDEN_1557SDEN_1551
SBOY300268 SBO_0162SBO_0161SBO_0152SBO_0159SBO_0155SBO_0158SBO_0157SBO_0156SBO_0160SBO_0154
SBAL402882 SHEW185_1449SHEW185_1451SHEW185_1447SHEW185_1443SHEW185_1446SHEW185_1445SHEW185_1444SHEW185_1448SHEW185_1442
SBAL399599 SBAL195_1485SBAL195_1487SBAL195_1483SBAL195_1479SBAL195_1482SBAL195_1481SBAL195_1480SBAL195_1484SBAL195_1478
RSOL267608 RSC1408RSC1410RSC1406RSC1402RSC1405RSC1404RSC1403RSC1407RSC1393
RRUB269796 RRU_A1590RRU_A1592RRU_A1588RRU_A3539RRU_A1587RRU_A1586RRU_A0733RRU_A1589RRU_A3479
RMET266264 RMET_1439RMET_1441RMET_1437RMET_1433RMET_1436RMET_1435RMET_1434RMET_1438RMET_1423
RLEG216596 RL2225RL4372RL2223RL0405RL2222RL2221RL2069RL2224RL0437
RFER338969 RFER_2675RFER_1994RFER_1991RFER_2422RFER_1990RFER_1989RFER_0852RFER_1992RFER_2046
REUT381666 H16_A2051H16_A2049H16_A2053H16_A2057H16_A2054H16_A2055H16_A2056H16_A2052H16_A2066
REUT264198 REUT_A1877REUT_A1875REUT_A1879REUT_A1883REUT_A1880REUT_A1881REUT_A1882REUT_A1878REUT_A1892
PSP56811 PSYCPRWF_1800PSYCPRWF_1798PSYCPRWF_1802PSYCPRWF_0556PSYCPRWF_0559PSYCPRWF_0558PSYCPRWF_0557PSYCPRWF_1801PSYCPRWF_0897
PSP312153 PNUC_1447PNUC_1445PNUC_1449PNUC_1453PNUC_1450PNUC_1451PNUC_1452PNUC_1448PNUC_1458
PSP296591 BPRO_2691BPRO_2689BPRO_2693BPRO_2588BPRO_2694BPRO_2695BPRO_2587BPRO_2692BPRO_1996
PPRO298386 PBPRA2964PBPRA2962PBPRA2971PBPRA2966PBPRA2970PBPRA2967PBPRA2968PBPRA2969PBPRA2965
PNAP365044 PNAP_3193PNAP_1764PNAP_1760PNAP_1819PNAP_1759PNAP_1758PNAP_4816PNAP_1761PNAP_1812
PMUL272843 PM1989PM1988PM1986PM0460PM1985PM1984PM0459PM1987PM0658
PLUM243265 PLU0677PLU0676PLU0668PLU0674PLU0670PLU0673PLU0672PLU0671PLU0675PLU0669
PING357804 PING_2972PING_2970PING_0715PING_2974PING_3004PING_2975PING_2976PING_3003PING_2973
PHAL326442 PSHAA2032PSHAA2030PSHAA2034PSHAA2038PSHAA2035PSHAA2036PSHAA2037PSHAA2033PSHAA2039
PCRY335284 PCRYO_1712PCRYO_1710PCRYO_1714PCRYO_0441PCRYO_0390PCRYO_0389PCRYO_0442PCRYO_1713PCRYO_0725
PARC259536 PSYC_1533PSYC_1531PSYC_1535PSYC_0395PSYC_0351PSYC_0350PSYC_0396PSYC_1534PSYC_0737
NOCE323261 NOC_0812NOC_0814NOC_0810NOC_0806NOC_0809NOC_0808NOC_0807NOC_0811NOC_2125
NMUL323848 NMUL_A0661NMUL_A0663NMUL_A0659NMUL_A2633NMUL_A0658NMUL_A0657NMUL_A2632NMUL_A0660NMUL_A1851
NMEN374833 NMCC_1966NMCC_1968NMCC_2067NMCC_1086NMCC_2066NMCC_2065NMCC_2058NMCC_1965NMCC_1808
NMEN272831 NMC0177NMC0175NMC2082NMC1104NMC2081NMC2080NMC2073NMC0178NMC1835
NMEN122587 NMA0081NMA0083NMA0326NMA1374NMA0327NMA0328NMA0337NMA0080NMA2153
NMEN122586 NMB_0186NMB_0184NMB_2103NMB_1203NMB_2102NMB_2101NMB_2093NMB_0187NMB_0335
NHAM323097 NHAM_1698NHAM_1700NHAM_1696NHAM_0226NHAM_1695NHAM_1694NHAM_0431NHAM_1697NHAM_3698
NGON242231 NGO1797NGO1799NGO1973NGO0798NGO1974NGO1975NGO1983NGO1796NGO1667
MSUC221988 MS1927MS1928MS1930MS1305MS1932MS1933MS1306MS1929MS1177
MSP400668 MMWYL1_1276MMWYL1_1278MMWYL1_0733MMWYL1_1274MMWYL1_1270MMWYL1_1273MMWYL1_1272MMWYL1_1271MMWYL1_1275
MPET420662 MPE_A1975MPE_A1973MPE_A1977MPE_A1759MPE_A1978MPE_A1979MPE_A1760MPE_A1976MPE_A1806
MMAR394221 MMAR10_1384MMAR10_1386MMAR10_1382MMAR10_3022MMAR10_1381MMAR10_1380MMAR10_1044MMAR10_1383MMAR10_0454
MFLA265072 MFLA_1526MFLA_1524MFLA_1528MFLA_1532MFLA_1529MFLA_1530MFLA_1531MFLA_1527MFLA_1866
MCAP243233 MCA_0571MCA_0573MCA_0569MCA_0565MCA_0568MCA_0567MCA_0566MCA_0570MCA_1490
LCHO395495 LCHO_2846LCHO_2844LCHO_2848LCHO_1918LCHO_2849LCHO_2850LCHO_1917LCHO_2847LCHO_2516
KPNE272620 GKPORF_B4476GKPORF_B4475GKPORF_B4467GKPORF_B4473GKPORF_B4469GKPORF_B4472GKPORF_B4471GKPORF_B4470GKPORF_B4474GKPORF_B4468
JSP375286 MMA_2054MMA_2052MMA_2056MMA_2060MMA_2057MMA_2058MMA_2059MMA_2055MMA_2069
ILOI283942 IL0841IL0839IL0843IL0847IL0844IL0845IL0846IL0842IL0848
HSOM228400 HSM_1461HSM_1463HSM_1465HSM_1298HSM_1018HSM_1019HSM_1297HSM_1464HSM_1252
HSOM205914 HS_0983HS_0985HS_0987HS_0829HS_1089HS_1088HS_0828HS_0986HS_0785
HINF71421 HI_0920HI_0807HI_1065HI_1719HI_0914HI_0913HI_1722HI_0808HI_1634
HINF374930 CGSHIEE_07415CGSHIEE_08025CGSHIEE_06760CGSHIEE_03445CGSHIEE_07445CGSHIEE_07450CGSHIEE_03440CGSHIEE_08020CGSHIEE_05835
HINF281310 NTHI1088NTHI0971NTHI1225NTHI2026NTHI1081NTHI1080NTHI2027NTHI0972NTHI1406
HHAL349124 HHAL_1462HHAL_1460HHAL_1464HHAL_1468HHAL_1465HHAL_1466HHAL_1467HHAL_1463HHAL_1470
HCHE349521 HCH_05248HCH_05246HCH_00487HCH_05251HCH_05255HCH_05252HCH_05253HCH_05254HCH_05249
HARS204773 HEAR1339HEAR1341HEAR1337HEAR1333HEAR1336HEAR1335HEAR1334HEAR1338HEAR1324
GOXY290633 GOX1814GOX1816GOX1812GOX1872GOX0074GOX0075GOX0606GOX1813GOX1831
ESP42895 ENT638_0712ENT638_0711ENT638_0703ENT638_0709ENT638_0705ENT638_0708ENT638_0707ENT638_0706ENT638_0710ENT638_0704
EFER585054 EFER_0196EFER_0195EFER_0186EFER_0193EFER_0189EFER_0192EFER_0191EFER_0190EFER_0194EFER_0188
ECOO157 YAESYAEMYAEHPYRHGLNDTSFRPSBMAPFRRDAPD
ECOL83334 ECS0176ECS0175ECS0167ECS0173ECS0169ECS0172ECS0171ECS0170ECS0174ECS0168
ECOL585397 ECED1_0180ECED1_0179ECED1_0170ECED1_0177ECED1_0172ECED1_0176ECED1_0175ECED1_0173ECED1_0178ECED1_0171
ECOL585057 ECIAI39_0177ECIAI39_0176ECIAI39_0167ECIAI39_0173ECIAI39_0169ECIAI39_0172ECIAI39_0171ECIAI39_0170ECIAI39_0175ECIAI39_0168
ECOL585056 ECUMN_0171ECUMN_0170ECUMN_0161ECUMN_0168ECUMN_0163ECUMN_0167ECUMN_0166ECUMN_0164ECUMN_0169ECUMN_0162
ECOL585055 EC55989_0168EC55989_0167EC55989_0158EC55989_0165EC55989_0160EC55989_0164EC55989_0163EC55989_0161EC55989_0166EC55989_0159
ECOL585035 ECS88_0184ECS88_0183ECS88_0174ECS88_0181ECS88_0176ECS88_0180ECS88_0179ECS88_0177ECS88_0182ECS88_0175
ECOL585034 ECIAI1_0172ECIAI1_0171ECIAI1_0162ECIAI1_0169ECIAI1_0164ECIAI1_0168ECIAI1_0167ECIAI1_0165ECIAI1_0170ECIAI1_0163
ECOL481805 ECOLC_3486ECOLC_3487ECOLC_3496ECOLC_3489ECOLC_3493ECOLC_3490ECOLC_3491ECOLC_3492ECOLC_3488ECOLC_3494
ECOL469008 ECBD_3445ECBD_3446ECBD_3455ECBD_3448ECBD_3452ECBD_3449ECBD_3450ECBD_3451ECBD_3447ECBD_3453
ECOL439855 ECSMS35_0185ECSMS35_0184ECSMS35_0175ECSMS35_0182ECSMS35_0177ECSMS35_0181ECSMS35_0180ECSMS35_0178ECSMS35_0183ECSMS35_0176
ECOL413997 ECB_00172ECB_00171ECB_00162ECB_00169ECB_00165ECB_00168ECB_00167ECB_00166ECB_00170ECB_00164
ECOL409438 ECSE_0173ECSE_0172ECSE_0164ECSE_0170ECSE_0166ECSE_0169ECSE_0168ECSE_0167ECSE_0171ECSE_0165
ECOL405955 APECO1_1813APECO1_1814APECO1_1822APECO1_1816APECO1_1820APECO1_1818APECO1_1819APECO1_1815APECO1_1821
ECOL364106 UTI89_C0189UTI89_C0188UTI89_C0179UTI89_C0186UTI89_C0181UTI89_C0185UTI89_C0183UTI89_C0182UTI89_C0187UTI89_C0180
ECOL362663 ECP_0182ECP_0181ECP_0173ECP_0179ECP_0175ECP_0178ECP_0177ECP_0176ECP_0180ECP_0174
ECOL331111 ECE24377A_0178ECE24377A_0177ECE24377A_0168ECE24377A_0175ECE24377A_0170ECE24377A_0174ECE24377A_0173ECE24377A_0171ECE24377A_0176ECE24377A_0169
ECOL316407 ECK0173:JW0169:B0174ECK0172:JW0168:B0173ECK0162:JW0159:B0163ECK0170:JW0166:B0171ECK0165:JW0162:B0167ECK0169:JW0165:B0170ECK0168:JW0164:B0169ECK0166:JW0163:B0168ECK0171:JW0167:B0172ECK0164:JW0161:B0166
ECOL199310 C0211C0200C0207C0202C0206C0204C0203C0208C0201
ECAR218491 ECA1036ECA1035ECA1027ECA1033ECA1029ECA1032ECA1031ECA1030ECA1034ECA1028
DSHI398580 DSHI_1495DSHI_1497DSHI_1493DSHI_2833DSHI_1549DSHI_1548DSHI_0117DSHI_1494DSHI_0006
DARO159087 DARO_1746DARO_1748DARO_1744DARO_1739DARO_1743DARO_1742DARO_1740DARO_1745DARO_1726
CVIO243365 CV_2200CV_2202CV_2198CV_2917CV_2197CV_2196CV_2397CV_2199CV_0450
CSP78 CAUL_2801CAUL_2799CAUL_2803CAUL_0009CAUL_2804CAUL_2805CAUL_3793CAUL_2802CAUL_4560
CRUT413404 RMAG_0027RMAG_0025RMAG_0262RMAG_0475RMAG_1073RMAG_1072RMAG_0398RMAG_0261RMAG_0074
CPSY167879 CPS_1557CPS_1559CPS_1555CPS_1549CPS_1554CPS_1553CPS_1550CPS_1556CPS_1548
CAULO CC1919CC1917CC1921CC0013CC1922CC1923CC2677CC1920CC0281
BVIE269482 BCEP1808_1921BCEP1808_1919BCEP1808_1923BCEP1808_1928BCEP1808_1924BCEP1808_1925BCEP1808_1927BCEP1808_1922BCEP1808_1936
BTHA271848 BTH_I2031BTH_I2033BTH_I2029BTH_I2025BTH_I2028BTH_I2027BTH_I2026BTH_I2030BTH_I2016
BSP376 BRADO4136BRADO4134BRADO4138BRADO0530BRADO4139BRADO4140BRADO0719BRADO4137BRADO0775
BSP36773 BCEP18194_A5325BCEP18194_A5323BCEP18194_A5327BCEP18194_A5331BCEP18194_A5328BCEP18194_A5329BCEP18194_A5330BCEP18194_A5326BCEP18194_A5339
BPSE320373 BURPS668_2433BURPS668_2431BURPS668_2435BURPS668_2439BURPS668_2436BURPS668_2437BURPS668_2438BURPS668_2434BURPS668_2449
BPSE320372 BURPS1710B_A2802BURPS1710B_A2800BURPS1710B_A2804BURPS1710B_A2809BURPS1710B_A2805BURPS1710B_A2806BURPS1710B_A2808BURPS1710B_A2803BURPS1710B_A2819
BPSE272560 BPSL2155BPSL2153BPSL2157BPSL2161BPSL2158BPSL2159BPSL2160BPSL2156BPSL2169
BPET94624 BPET2531BPET2529BPET2533BPET2537BPET2534BPET2535BPET2536BPET2532BPET2799
BPER257313 BP1423BP1425BP1421BP1417BP1420BP1419BP1418BP1422BP1764
BPAR257311 BPP1531BPP1533BPP1529BPP1525BPP1528BPP1527BPP1526BPP1530BPP1995
BMAL320389 BMA10247_1324BMA10247_1322BMA10247_1326BMA10247_1331BMA10247_1327BMA10247_1328BMA10247_1330BMA10247_1325BMA10247_1341
BMAL320388 BMASAVP1_A2052BMASAVP1_A2050BMASAVP1_A2054BMASAVP1_A2059BMASAVP1_A2055BMASAVP1_A2056BMASAVP1_A2058BMASAVP1_A2053BMASAVP1_A2069
BMAL243160 BMA_1551BMA_1549BMA_1553BMA_1557BMA_1554BMA_1555BMA_1556BMA_1552BMA_1566
BCEN331272 BCEN2424_2015BCEN2424_2013BCEN2424_2017BCEN2424_2021BCEN2424_2018BCEN2424_2019BCEN2424_2020BCEN2424_2016BCEN2424_2030
BCEN331271 BCEN_6062BCEN_6064BCEN_6060BCEN_6056BCEN_6059BCEN_6058BCEN_6057BCEN_6061BCEN_6047
BBRO257310 BB2609BB2611BB2607BB2603BB2606BB2605BB2604BB2608BB2183
BAMB398577 BAMMC406_1917BAMMC406_1915BAMMC406_1919BAMMC406_1923BAMMC406_1920BAMMC406_1921BAMMC406_1922BAMMC406_1918BAMMC406_1931
BAMB339670 BAMB_2048BAMB_2046BAMB_2050BAMB_2054BAMB_2051BAMB_2052BAMB_2053BAMB_2049BAMB_2062
ASP76114 EBA5991EBA5994EBA5988EBA5982EBA5987EBA5986EBA5984EBA5990EBA6386
ASP62977 ACIAD1374ACIAD1376ACIAD1372ACIAD2079ACIAD2268ACIAD2269ACIAD2271ACIAD1373ACIAD2599
ASP62928 AZO1905AZO1903AZO1907AZO1911AZO1908AZO1909AZO1910AZO1906AZO2005
ASP232721 AJS_2581AJS_2579AJS_2583AJS_2294AJS_2584AJS_2585AJS_2293AJS_2582AJS_2067
ASAL382245 ASA_3156ASA_3154ASA_3165ASA_3158ASA_3163ASA_3159ASA_3160ASA_3162ASA_3157ASA_3164
APLE434271 APJL_0438APJL_0428APJL_0562APJL_0592APJL_0560APJL_0559APJL_2080APJL_0563APJL_1904
APLE416269 APL_0414APL_0406APL_0569APL_0598APL_0567APL_0566APL_2030APL_0570APL_1861
AHYD196024 AHA_1177AHA_1179AHA_1169AHA_1175AHA_1171AHA_1174AHA_1173AHA_1172AHA_1176AHA_1170
AFER243159 AFE_1636AFE_1634AFE_1638AFE_2122AFE_1639AFE_1640AFE_2121AFE_1637AFE_1265
AEHR187272 MLG_1859MLG_1857MLG_1861MLG_1865MLG_1862MLG_1863MLG_1864MLG_1860MLG_1867
ACRY349163 ACRY_2555ACRY_2557ACRY_2553ACRY_0914ACRY_1695ACRY_1694ACRY_1492ACRY_2554ACRY_1530
ABAU360910 BAV1738BAV1740BAV1736BAV1732BAV1735BAV1734BAV1733BAV1737BAV1421
AAVE397945 AAVE_1827AAVE_1829AAVE_1825AAVE_3101AAVE_1824AAVE_1823AAVE_3100AAVE_1826AAVE_2484


Organism features enriched in list (features available for 141 out of the 150 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00086041192
Arrangment:Pairs 0.000077243112
Disease:Bubonic_plague 0.000184466
Disease:Dysentery 0.000184466
Disease:Meningitis_and_septicemia 0.003311744
Endospores:No 9.534e-728211
GC_Content_Range4:0-40 7.794e-228213
GC_Content_Range4:40-60 2.524e-882224
GC_Content_Range4:60-100 0.000205051145
GC_Content_Range7:30-40 2.696e-148166
GC_Content_Range7:50-60 7.521e-950107
GC_Content_Range7:60-70 0.000016951134
Genome_Size_Range5:0-2 7.247e-174155
Genome_Size_Range5:2-4 0.000203131197
Genome_Size_Range5:4-6 1.977e-1989184
Genome_Size_Range9:1-2 7.523e-134128
Genome_Size_Range9:2-3 0.004946219120
Genome_Size_Range9:4-5 3.648e-94796
Genome_Size_Range9:5-6 8.938e-84288
Genome_Size_Range9:6-8 0.00574271638
Gram_Stain:Gram_Neg 3.304e-24129333
Motility:No 7.938e-814151
Motility:Yes 4.010e-790267
Optimal_temp.:35-37 2.791e-71213
Oxygen_Req:Anaerobic 2.438e-103102
Oxygen_Req:Facultative 6.838e-1181201
Pathogenic_in:No 0.000296038226
Shape:Coccus 0.0007754982
Shape:Rod 3.846e-11116347
Shape:Spiral 0.0039073234
Temp._range:Mesophilic 0.0053837124473
Temp._range:Psychrophilic 0.000069489
Temp._range:Thermophilic 0.0005319135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 79
Effective number of orgs (counting one per cluster within 468 clusters): 72

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
PTOR263820 ncbi Picrophilus torridus DSM 97900
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CFEL264202 ncbi Chlamydophila felis Fe/C-561
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1350
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G6092   EG12715   EG12336   EG11539   EG11411   EG11033   EG10901   EG10570   EG10335   EG10207   
UURE95667 UU514
UURE95664 UUR10_0597
UPAR505682 UPA3_0545
UMET351160
TVOL273116
TPEN368408
TPAL243276
TKOD69014
TACI273075
STOK273063
SSOL273057
SMAR399550
SACI330779
PTOR263820
PISL384616
PHOR70601
PFUR186497
PAST100379 PAM166
PARS340102
PAER178306
PABY272844
NSEN222891 NSE_0337
NPHA348780 NP1494A
MTHE349307
MTHE187420
MSYN262723 MS53_0414
MSTA339860
MSED399549
MPUL272635 MYPU_5320
MPNE272634
MPEN272633 MYPE9580
MMYC272632 MSC_0607
MMOB267748 MMOB1770
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192 MK0435
MJAN243232
MHYO295358 MHP059
MHYO262722 MHP7448_0056
MHYO262719 MHJ_0052
MHUN323259
MGEN243273
MFLO265311 MFL560
MCAP340047 MCAP_0372
MBUR259564
MBAR269797
MART243272 MART0052
MAEO419665
MACE188937
IHOS453591
HWAL362976 HQ1509A
HSP64091
HSAL478009
HPYL85963 JHP0714
HPYL357544 HPAG1_0762
HPY HP0777
HMUK485914 HMUK_3168
HMAR272569 RRNAC0204
HBUT415426
CSUL444179 SMGWSS_097
CMET456442
CMAQ397948
CKOR374847
CFEL264202 CF0566
BXEN266265 BXE_B0269
BTUR314724
BHER314723
BGAR290434
BBUR224326
BAFZ390236
AYEL322098 AYWB_553
AURANTIMONAS
APER272557
AFUL224325


Organism features enriched in list (features available for 75 out of the 79 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.002348759
Arrangment:Chains 0.0006626392
Arrangment:Pairs 0.00711417112
Arrangment:Singles 0.000077652286
Endospores:No 4.613e-1457211
GC_Content_Range4:0-40 0.001371839213
GC_Content_Range4:60-100 0.00068428145
GC_Content_Range7:0-30 7.491e-82047
GC_Content_Range7:60-70 0.00216498134
Genome_Size_Range5:0-2 4.833e-1651155
Genome_Size_Range5:4-6 4.520e-94184
Genome_Size_Range5:6-10 0.0088215147
Genome_Size_Range9:0-1 3.647e-101727
Genome_Size_Range9:1-2 7.202e-734128
Genome_Size_Range9:4-5 0.0003990396
Genome_Size_Range9:5-6 0.0000288188
Gram_Stain:Gram_Neg 5.044e-723333
Habitat:Aquatic 0.00146632191
Habitat:Multiple 9.345e-85178
Habitat:Specialized 4.033e-61953
Optimal_temp.:- 0.000434820257
Optimal_temp.:100 0.002055233
Optimal_temp.:35-40 0.002055233
Optimal_temp.:85 0.000255144
Oxygen_Req:Anaerobic 2.117e-832102
Pathogenic_in:Human 0.001180016213
Pathogenic_in:No 0.004480539226
Salinity:Extreme_halophilic 0.000507457
Salinity:Moderate_halophilic 0.0099866512
Shape:Irregular_coccus 1.273e-121517
Shape:Rod 1.218e-1612347
Shape:Sphere 8.610e-131619
Temp._range:Hyperthermophilic 6.767e-121723
Temp._range:Mesophilic 6.884e-744473
Temp._range:Thermophilic 0.00605121035



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 6
Effective number of orgs (counting one per cluster within 468 clusters): 5

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica) 0.00027947559
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum) 0.00144376218
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum) 0.00180416398
CBLO203907 ncbi Candidatus Blochmannia floridanus 0.00221366568
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN 0.00335396928
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA 0.00518657328


Names of the homologs of the genes in the group in each of these orgs
  G6092   EG12715   EG12336   EG11539   EG11411   EG11033   EG10901   EG10570   EG10335   EG10207   
CRUT413404 RMAG_0027RMAG_0025RMAG_0262RMAG_0475RMAG_1073RMAG_1072RMAG_0398RMAG_0261RMAG_0074
BAPH198804 BUSG230BUSG229BUSG227BUSG226BUSG225BUSG224BUSG228BUSG223
BSP107806 BU236BU235BU233BU232BU231BU230BU234BU229
CBLO203907 BFL276BFL275BFL273BFL272BFL271BFL270BFL274BFL269
CBLO291272 BPEN_284BPEN_283BPEN_281BPEN_280BPEN_279BPEN_278BPEN_282BPEN_277
CVES412965 COSY_0027COSY_0025COSY_0438COSY_0972COSY_0971COSY_0369COSY_0246COSY_0080


Organism features enriched in list (features available for 6 out of the 6 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
GC_Content_Range4:0-40 0.00227316213
GC_Content_Range7:0-30 0.0004812447
Genome_Size_Range5:0-2 0.00032866155
Genome_Size_Range9:0-1 8.446e-7527
Optimal_temp.:- 0.00710016257
Pathogenic_in:No 0.00325686226



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181310.6180
GLYCOCAT-PWY (glycogen degradation I)2461340.5743
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001460.5543
GALACTITOLCAT-PWY (galactitol degradation)73630.5302
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951120.5266
PWY-4041 (γ-glutamyl cycle)2791360.5196
PWY-1269 (CMP-KDO biosynthesis I)3251470.5167
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251200.5145
PWY-5918 (heme biosynthesis I)2721330.5110
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831060.5105
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149930.5028
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861350.4983
AST-PWY (arginine degradation II (AST pathway))120810.4961
LIPASYN-PWY (phospholipases)2121130.4909
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761010.4889
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911060.4886
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911060.4886
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911350.4886
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81630.4856
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961350.4791
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481470.4779
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391450.4777
PWY-5386 (methylglyoxal degradation I)3051370.4774
PWY-5913 (TCA cycle variation IV)3011350.4698
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901310.4604
GLUCONSUPER-PWY (D-gluconate degradation)2291140.4583
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491190.4526
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491190.4526
PWY0-981 (taurine degradation IV)106700.4444
PWY-3162 (tryptophan degradation V (side chain pathway))94650.4444
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291380.4421
TYRFUMCAT-PWY (tyrosine degradation I)184980.4419
PWY0-1182 (trehalose degradation II (trehalase))70540.4416
P601-PWY (D-camphor degradation)95650.4399
PWY-5148 (acyl-CoA hydrolysis)2271110.4395
DAPLYSINESYN-PWY (lysine biosynthesis I)3421400.4350
GLUCARDEG-PWY (D-glucarate degradation I)152850.4231
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001280.4190
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551150.4093
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116700.4058
PWY-46 (putrescine biosynthesis III)138780.4048
KDOSYN-PWY (KDO transfer to lipid IVA I)180920.4030
PWY-561 (superpathway of glyoxylate cycle)162860.4022
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50410.4002
PWY-6196 (serine racemization)102640.4002



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12715   EG12336   EG11539   EG11411   EG11033   EG10901   EG10570   EG10335   EG10207   
G60920.9999640.9985220.9999490.9994270.99990.9999220.999440.9999770.998838
EG127150.9985240.9999150.9994640.9998450.9998730.9994280.9999470.998829
EG123360.9986620.9989780.9986650.9987910.9987170.9986070.998889
EG115390.9995140.9999570.9999660.9995770.9999960.998893
EG114110.9996670.9996170.9998020.9995420.999413
EG110330.9999930.9997090.9999490.999086
EG109010.9997130.9999490.998995
EG105700.9995850.999241
EG103350.998936
EG10207



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PAIRWISE BLAST SCORES:

  G6092   EG12715   EG12336   EG11539   EG11411   EG11033   EG10901   EG10570   EG10335   EG10207   
G60920.0f0---------
EG12715-0.0f0--------
EG12336--0.0f0-------
EG11539---0.0f0------
EG11411----0.0f0-----
EG11033-----0.0f0----
EG10901------0.0f0---
EG10570-------0.0f0--
EG10335--------0.0f0-
EG10207---------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10207 EG10335 EG10570 EG10901 EG11033 EG11411 EG11539 EG12336 EG12715 G6092 (centered at EG11033)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6092   EG12715   EG12336   EG11539   EG11411   EG11033   EG10901   EG10570   EG10335   EG10207   
411/623401/62360/623413/623277/623412/623415/623363/623414/623349/623
AAEO224324:0:Tyes---0-1----
AAUR290340:2:Tyes-39---0-2192-
AAVE397945:0:Tyes46-212581012573652
ABAC204669:0:Tyes11681170-01239-309-21845
ABAU360910:0:Tyes315317-3133093123113103140
ABOR393595:0:Tyes68-403215-
ABUT367737:0:Tyes2002--4490345344-2076-
ACAU438753:0:Tyes15051507-1503127-1501404415040
ACEL351607:0:Tyes-0--401718-15320
ACRY349163:8:Tyes16501652-164807827815751649615
ADEH290397:0:Tyes33453343-71435-0166983593
AEHR187272:0:Tyes20-48567310
AFER243159:0:Tyes365363-3678493683698483660
AHYD196024:0:Tyes81006254371
ALAI441768:0:Tyes-----103910400--
AMAR234826:0:Tyes-437-0--471695-876
AMAR329726:9:Tyes3960-4898----4899-
AMET293826:0:Tyes20-5-67-4506
ANAE240017:0:Tyes-225---231-0229-
AORE350688:0:Tyes997999-995-9949930996-
APHA212042:0:Tyes-312-0--2701025--
APLE416269:0:Tyes80-16219116015916631631500
APLE434271:0:Tno80-11814811611516801191507
ASAL382245:5:Tyes201149568310
ASP1667:3:Tyes-31---0-2252-
ASP232721:2:Tyes504502-5062155075082145050
ASP62928:0:Tyes20-485673102
ASP62977:0:Tyes24-065983283383411134
ASP76114:2:Tyes79-504316239
AVAR240292:3:Tyes290679-0---127--
AYEL322098:4:Tyes-----0----
BABO262698:0:Tno---------0
BABO262698:1:Tno968--97009719721090969-
BAMB339670:3:Tno20-48567316
BAMB398577:3:Tno20-48567316
BAMY326423:0:Tyes14701472-1468-14671466014691228
BANT260799:0:Tno20-4-56-3218
BANT261594:2:Tno20-4-56-3228
BANT568206:2:Tyes46-2-10-33490
BANT592021:2:Tno20-4-56-3229
BAPH198804:0:Tyes76-4-32150
BAPH372461:0:Tyes---4-32150
BBAC264462:0:Tyes1863--1861171-1859-18620
BBAC360095:0:Tyes---2-102253682
BBRO257310:0:Tyes421423-4194154184174164200
BCAN483179:0:Tno---------0
BCAN483179:1:Tno995--99709989991124996-
BCEN331271:0:Tno1517-139121110140
BCEN331272:3:Tyes20-48567317
BCER226900:1:Tyes20-4-56-3160
BCER288681:0:Tno20-4-56-3158
BCER315749:1:Tyes3210-323-324325-322527
BCER405917:1:Tyes20-4-56-3164
BCER572264:1:Tno20-4-56-3161
BCIC186490:0:Tyes65-3-2104-
BCLA66692:0:Tyes21042102-2106-21072108021052299
BFRA272559:1:Tyes02975-168---2064--
BFRA295405:0:Tno03240-196---2081--
BHAL272558:0:Tyes20-4-56-3248
BHEN283166:0:Tyes---530-5295287235310
BJAP224911:0:Fyes39633961-39650-3967729939647233
BLIC279010:0:Tyes16681670-1666-16651664016671430
BLON206672:0:Tyes-0--3221388--1390-
BMAL243160:1:Tno20-48567317
BMAL320388:1:Tno20-49568319
BMAL320389:1:Tyes20-49568319
BMEL224914:0:Tno---------0
BMEL224914:1:Tno112--11011071091080111-
BMEL359391:0:Tno---------0
BMEL359391:1:Tno936--93809399401048937-
BOVI236:0:Tyes---------0
BOVI236:1:Tyes881--8830884885997882-
BPAR257311:0:Tno68-403215448
BPER257313:0:Tyes68-403215317
BPET94624:0:Tyes20-485673276
BPSE272560:1:Tyes20-48567316
BPSE320372:1:Tno20-49568319
BPSE320373:1:Tno20-48567318
BPUM315750:0:Tyes14611463---1458-014601225
BQUI283165:0:Tyes---564-5655664965630
BSP107806:2:Tyes76-4-32150
BSP36773:2:Tyes20-48567316
BSP376:0:Tyes34273425-34290343034311753428228
BSUB:0:Tyes16331635-1631-16301629016321385
BSUI204722:0:Tyes---------0
BSUI204722:1:Tyes981--98309849851103982-
BSUI470137:0:Tno---------0
BSUI470137:1:Tno1026--102801029103011531027-
BTHA271848:1:Tno1517-139121110140
BTHE226186:0:Tyes31521401-1643---0--
BTHU281309:1:Tno20-4-56-3160
BTHU412694:1:Tno20-4-56-3149
BTRI382640:1:Tyes---741-7407399557420
BVIE269482:7:Tyes20-49568317
BWEI315730:4:Tyes20-4-56-3162
BXEN266265:1:Tyes-------0--
CABO218497:0:Tyes-374---0----
CACE272562:1:Tyes-7-1-0--2588
CAULO:0:Tyes19291927-193101932193327081930270
CBEI290402:0:Tyes36-1-0-23662591
CBLO203907:0:Tyes76-4-32150
CBLO291272:0:Tno76-4-32150
CBOT36826:1:Tno60------7729
CBOT441770:0:Tyes50------6877
CBOT441771:0:Tno50------6765
CBOT441772:1:Tno50------6711
CBOT498213:1:Tno50------6823
CBOT508765:1:Tyes47-2-108231227
CBOT515621:2:Tyes40------5756
CBOT536232:0:Tno50------6814
CBUR227377:1:Tyes676--678-6796806826770
CBUR360115:1:Tno698--700-7017027046990
CBUR434922:2:Tno6--4-320569
CCAV227941:1:Tyes-393---0-700--
CCHL340177:0:Tyes4650-1652--1654--1995
CCON360104:2:Tyes---8296-875-12400
CCUR360105:0:Tyes---2381002-0---
CDES477974:0:Tyes49----0-3-
CDIF272563:1:Tyes50---910-71102
CDIP257309:0:Tyes-4--3611-09-
CEFF196164:0:Fyes-4--6513-09-
CFEL264202:1:Tyes-0--------
CFET360106:0:Tyes---6130-831---
CGLU196627:0:Tyes-8--4917-015-
CHOM360107:1:Tyes-0-1141--701---
CHUT269798:0:Tyes27862375-0-2415--11426
CHYD246194:0:Tyes30-7--9-6-
CJAP155077:0:Tyes1214-10076111-
CJEI306537:0:Tyes-----15-013-
CJEJ192222:0:Tyes---94-01---
CJEJ195099:0:Tno---94-0----
CJEJ354242:2:Tyes---94-0----
CJEJ360109:0:Tyes---0-94----
CJEJ407148:0:Tno---94-0----
CKLU431943:1:Tyes11631165-1161--1159011622937
CMIC31964:2:Tyes-1037---0----
CMIC443906:2:Tyes-799---0----
CMUR243161:1:Tyes-287---0----
CNOV386415:0:Tyes401399-403-4044058754020
CPEL335992:0:Tyes-------678-0
CPER195102:1:Tyes314312-316-3173180315532
CPER195103:0:Tno307305-309-3103110308513
CPER289380:3:Tyes287285-289-2902910288490
CPHY357809:0:Tyes20----588103-
CPNE115711:1:Tyes-364---0----
CPNE115713:0:Tno-0---359----
CPNE138677:0:Tno-0---362----
CPNE182082:0:Tno-0---381----
CPRO264201:0:Fyes-124-1780-0----
CPSY167879:0:Tyes911-7165280
CRUT413404:0:Tyes20-22542398998835022450
CSAL290398:0:Tyes68-403215-
CSP501479:6:Fyes----0-----
CSP501479:7:Fyes-------0-633
CSP501479:8:Fyes2826---10---
CSP78:2:Tyes28012799-2803028042805382328024587
CSUL444179:0:Tyes---------0
CTEP194439:0:Tyes1410-1629--1631-14302104
CTET212717:0:Tyes47----0-3-
CTRA471472:0:Tyes-287---0----
CTRA471473:0:Tno-287---0----
CVES412965:0:Tyes20--39390790633021252
CVIO243365:0:Tyes18011803-1799252317981797199918000
DARO159087:0:Tyes2022-1813171614190
DDES207559:0:Tyes30-61206-10-5-
DETH243164:0:Tyes20-4----3-
DGEO319795:1:Tyes-----2-2350-
DHAF138119:0:Tyes30-5--7-4-
DNOD246195:0:Tyes0--2-345190
DOLE96561:0:Tyes-6-296-017443-
DPSY177439:2:Tyes238240-2360--1345237-
DRAD243230:3:Tyes-----196-0194-
DRED349161:0:Tyes30-6-78-5-
DSHI398580:5:Tyes15121514-151028661566156511115110
DSP216389:0:Tyes20-4----3-
DSP255470:0:Tno20-4----3-
DVUL882:1:Tyes-0-536578-4-
ECAN269484:0:Tyes-453-742--498839-0
ECAR218491:0:Tyes10907265381
ECHA205920:0:Tyes-480-198--440960-0
ECOL199310:0:Tno9-07264381
ECOL316407:0:Tno111008376492
ECOL331111:6:Tno9806254371
ECOL362663:0:Tno9806254371
ECOL364106:1:Tno10907264381
ECOL405955:2:Tyes98062-4371
ECOL409438:6:Tyes9806254371
ECOL413997:0:Tno10907365482
ECOL439855:4:Tno10907264381
ECOL469008:0:Tno01103745628
ECOL481805:0:Tno01113845729
ECOL585034:0:Tno111008276391
ECOL585035:0:Tno10907265381
ECOL585055:0:Tno111008276391
ECOL585056:2:Tno10907265381
ECOL585057:0:Tno111007265391
ECOL585397:0:Tno10907265381
ECOL83334:0:Tno9806254371
ECOLI:0:Tno111008376492
ECOO157:0:Tno9806254371
EFAE226185:3:Tyes1284--1190-11911192-11890
EFER585054:1:Tyes111008376492
ELIT314225:0:Tyes-432--2058-42404291614
ERUM254945:0:Tyes-494-766--533871-0
ERUM302409:0:Tno-485-759--524863-0
ESP42895:1:Tyes9806254371
FALN326424:0:Tyes-4761--0---47655096
FJOH376686:0:Tyes1127--0-----1979
FMAG334413:1:Tyes------0-3-
FNOD381764:0:Tyes1453-----11931063-0
FNUC190304:0:Tyes18351833-2-10---
FPHI484022:1:Tyes245870---2482490246539
FRANT:0:Tno41179---10783-
FSP106370:0:Tyes-3146--0----3429
FSP1855:0:Tyes-300--5253----0
FSUC59374:0:Tyes14321437-1428---01431-
FTUL351581:0:Tno4281---102123-
FTUL393011:0:Tno4264---101993-
FTUL393115:0:Tyes41157---10763-
FTUL401614:0:Tyes41244---1025931487
FTUL418136:0:Tno11830---1186118711131184-
FTUL458234:0:Tno4278---102133-
GBET391165:0:Tyes521523-5190-8641238520271
GFOR411154:0:Tyes114--1-34--02176
GKAU235909:1:Tyes11771179-1175-1174117301176973
GMET269799:1:Tyes-6-2181-0-3-
GOXY290633:5:Tyes17261728-172417840152717251743
GSUL243231:0:Tyes-94-980-100-97-
GTHE420246:1:Tyes967969-965-9649630966775
GURA351605:0:Tyes13341332-13360-1338-1335-
GVIO251221:0:Tyes02169-2259---2330183-
HACI382638:1:Tyes---324-0----
HARS204773:0:Tyes1517-139121110140
HAUR316274:2:Tyes0--4823---9714822-
HCHE349521:0:Tyes457645740457845824579458045814577-
HDUC233412:0:Tyes839831-1176-1178117901175337
HHAL349124:0:Tyes20-48567310
HHEP235279:0:Tyes671--399--650-0-
HINF281310:0:Tyes1040-22292898979291375
HINF374930:0:Tyes694806-57917007010805416
HINF71421:0:Tno1120-2528941061058971810
HMAR272569:8:Tyes---------0
HMOD498761:0:Tyes58-2--0-3-
HMUK485914:1:Tyes---------0
HNEP81032:0:Tyes-1333-1329971328132752813300
HPY:0:Tno---0------
HPYL357544:1:Tyes---0------
HPYL85963:0:Tno---0------
HSOM205914:1:Tyes199201-20344306305432020
HSOM228400:0:Tno438440-44227701276441232
HWAL362976:1:Tyes---------0
ILOI283942:0:Tyes20-4856739
JSP290400:1:Tyes-2189-2194618203820390-67
JSP375286:0:Tyes20-48567317
KPNE272620:2:Tyes9806254371
KRAD266940:2:Fyes-0--3211-26679-
LACI272621:0:Tyes385--387-388389--0
LBIF355278:2:Tyes-0-4726-696--
LBIF456481:2:Tno-0-4763-699--
LBOR355276:1:Tyes-6-2--0680--
LBOR355277:1:Tno-6-2--0488--
LBRE387344:2:Tyes0--2-34---
LCAS321967:1:Tyes1442--1444-14451446-14430
LCHO395495:0:Tyes943941-94519469470944605
LDEL321956:0:Tyes0--2-34---
LDEL390333:0:Tyes0--2-34---
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