CANDIDATE ID: 148

CANDIDATE ID: 148

NUMBER OF GENES: 10
AVERAGE SCORE:    9.9930247e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11653 (cyaY) (b3807)
   Products of gene:
     - EG11653-MONOMER (frataxin, iron-binding and oxidizing protein)

- EG11202 (yigB) (b3812)
   Products of gene:
     - EG11202-MONOMER (FMN phosphatase)
       Reactions:
        FMN + H2O  ->  riboflavin + phosphate

- EG11201 (yigA) (b3810)
   Products of gene:
     - EG11201-MONOMER (conserved protein)

- EG11069 (xerC) (b3811)
   Products of gene:
     - EG11069-MONOMER (site-specific recombinase, acts on cer sequence of ColE1,  effects chromosome segregation at cell division)
     - CPLX0-3959 (Xer site-specific recombination system)

- EG10434 (hemY) (b3802)
   Products of gene:
     - EG10434-MONOMER (predicted protoheme IX synthesis protein)

- EG10433 (hemX) (b3803)
   Products of gene:
     - HEMX-MONOMER (conserved protein)

- EG10430 (hemD) (b3804)
   Products of gene:
     - UROGENIIISYN-MONOMER (uroporphyrinogen III synthase)
       Reactions:
        hydroxymethylbilane  =  uroporphyrinogen-III + H2O
         In pathways
         PWY-5918 (PWY-5918)
         PWY-5529 (PWY-5529)
         PWY-5920 (PWY-5920)
         PWY-5188 (tetrapyrrole biosynthesis I)
         PWY-5189 (PWY-5189)

- EG10429 (hemC) (b3805)
   Products of gene:
     - OHMETHYLBILANESYN-MONOMER (hydroxymethylbilane synthase)
       Reactions:
        4 porphobilinogen + H2O  =  4 ammonia + hydroxymethylbilane + 4 H+
         In pathways
         PWY-5918 (PWY-5918)
         PWY-5529 (PWY-5529)
         PWY-5920 (PWY-5920)
         PWY-5188 (tetrapyrrole biosynthesis I)
         PWY-5189 (PWY-5189)

- EG10209 (dapF) (b3809)
   Products of gene:
     - DIAMINOPIMEPIM-MONOMER (diaminopimelate epimerase)
       Reactions:
        L,L-diaminopimelate  =  meso-diaminopimelate
         In pathways
         PWY0-781 (aspartate superpathway)
         P4-PWY (superpathway of lysine, threonine and methionine biosynthesis I)
         PWY-724 (PWY-724)
         DAPLYSINESYN-PWY (lysine biosynthesis I)
         PWY-2941 (PWY-2941)
         PWY-5097 (PWY-5097)

- EG10170 (cyaA) (b3806)
   Products of gene:
     - ADENYLATECYC-MONOMER (adenylate cyclase)
       Reactions:
        ATP  ->  cyclic-AMP + diphosphate + H+



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 80
Effective number of orgs (counting one per cluster within 468 clusters): 42

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175810
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295310
YPES386656 ncbi Yersinia pestis Pestoides F10
YPES377628 ncbi Yersinia pestis Nepal51610
YPES360102 ncbi Yersinia pestis Antiqua10
YPES349746 ncbi Yersinia pestis Angola10
YPES214092 ncbi Yersinia pestis CO9210
YPES187410 ncbi Yersinia pestis KIM 1010
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808110
VVUL216895 ncbi Vibrio vulnificus CMCP610
VVUL196600 ncbi Vibrio vulnificus YJ01610
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 221063310
VCHO345073 ncbi Vibrio cholerae O39510
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696110
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT210
SSP94122 ncbi Shewanella sp. ANA-310
SSON300269 ncbi Shigella sonnei Ss04610
SSED425104 ncbi Shewanella sediminis HAW-EB310
SPRO399741 ncbi Serratia proteamaculans 56810
SPEA398579 ncbi Shewanella pealeana ATCC 70034510
SONE211586 ncbi Shewanella oneidensis MR-110
SLOI323850 ncbi Shewanella loihica PV-410
SHIGELLA ncbi Shigella flexneri 2a str. 2457T10
SHAL458817 ncbi Shewanella halifaxensis HAW-EB410
SFLE373384 ncbi Shigella flexneri 5 str. 840110
SFLE198214 ncbi Shigella flexneri 2a str. 30110
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47610
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915010
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1810
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty210
SDYS300267 ncbi Shigella dysenteriae Sd19710
SDEN318161 ncbi Shewanella denitrificans OS2179
SBOY300268 ncbi Shigella boydii Sb22710
SBAL402882 ncbi Shewanella baltica OS18510
SBAL399599 ncbi Shewanella baltica OS19510
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC300010
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a10
PSTU379731 ncbi Pseudomonas stutzeri A150110
PPUT76869 ncbi Pseudomonas putida GB-110
PPUT351746 ncbi Pseudomonas putida F110
PPUT160488 ncbi Pseudomonas putida KT244010
PPRO298386 ncbi Photobacterium profundum SS910
PMUL272843 ncbi Pasteurella multocida multocida Pm7010
PMEN399739 ncbi Pseudomonas mendocina ymp9
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO110
PING357804 ncbi Psychromonas ingrahamii 379
PFLU220664 ncbi Pseudomonas fluorescens Pf-510
PFLU216595 ncbi Pseudomonas fluorescens SBW2510
PFLU205922 ncbi Pseudomonas fluorescens Pf0-110
PENT384676 ncbi Pseudomonas entomophila L4810
PATL342610 ncbi Pseudoalteromonas atlantica T6c9
PAER208964 ncbi Pseudomonas aeruginosa PAO110
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA1410
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E10
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857810
ESP42895 Enterobacter sp.10
EFER585054 ncbi Escherichia fergusonii ATCC 3546910
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H710
ECOL585397 ncbi Escherichia coli ED1a10
ECOL585057 ncbi Escherichia coli IAI3910
ECOL585056 ncbi Escherichia coli UMN02610
ECOL585055 ncbi Escherichia coli 5598910
ECOL585035 ncbi Escherichia coli S8810
ECOL585034 ncbi Escherichia coli IAI110
ECOL481805 ncbi Escherichia coli ATCC 873910
ECOL469008 ncbi Escherichia coli BL21(DE3)10
ECOL439855 ncbi Escherichia coli SMS-3-510
ECOL413997 ncbi Escherichia coli B str. REL60610
ECOL409438 ncbi Escherichia coli SE1110
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8910
ECOL362663 ncbi Escherichia coli 53610
ECOL331111 ncbi Escherichia coli E24377A10
ECOL316407 ncbi Escherichia coli K-12 substr. W311010
ECOL199310 ncbi Escherichia coli CFT07310
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104310
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44910
AHYD196024 Aeromonas hydrophila dhakensis10


Names of the homologs of the genes in the group in each of these orgs
  EG11653   EG11202   EG11201   EG11069   EG10434   EG10433   EG10430   EG10429   EG10209   EG10170   
YPSE349747 YPSIP31758_0203YPSIP31758_0208YPSIP31758_0206YPSIP31758_0207YPSIP31758_0195YPSIP31758_0196YPSIP31758_0197YPSIP31758_0198YPSIP31758_0205YPSIP31758_0201
YPSE273123 YPTB0188YPTB0193YPTB0191YPTB0192YPTB0181YPTB0182YPTB0183YPTB0184YPTB0190YPTB0185
YPES386656 YPDSF_3464YPDSF_3459YPDSF_3461YPDSF_3460YPDSF_3470YPDSF_3469YPDSF_3468YPDSF_3467YPDSF_3462YPDSF_3465
YPES377628 YPN_0117YPN_0122YPN_0120YPN_0121YPN_0111YPN_0112YPN_0113YPN_0114YPN_0119YPN_0116
YPES360102 YPA_0175YPA_0180YPA_0178YPA_0179YPA_0169YPA_0170YPA_0171YPA_0172YPA_0177YPA_0174
YPES349746 YPANGOLA_A0539YPANGOLA_A0544YPANGOLA_A0542YPANGOLA_A0543YPANGOLA_A0533YPANGOLA_A0534YPANGOLA_A0535YPANGOLA_A0536YPANGOLA_A0541YPANGOLA_A0538
YPES214092 YPO3847YPO3842YPO3844YPO3843YPO3852YPO3851YPO3850YPO3849YPO3845YPO3848
YPES187410 Y0383Y0388Y0386Y0387Y0378Y0379Y0380Y0381Y0385Y0382
YENT393305 YE0190YE0195YE0193YE0194YE0184YE0185YE0186YE0187YE0192YE0189
VVUL216895 VV1_1124VV1_1130VV1_1128VV1_1129VV1_1119VV1_1120VV1_1121VV1_1122VV1_1127VV1_1123
VVUL196600 VV0085VV0090VV0088VV0089VV0078VV0079VV0080VV0081VV0087VV0083
VPAR223926 VP2986VP2980VP2982VP2981VP2991VP2990VP2989VP2988VP2983VP2987
VCHO345073 VC0395_A2396VC0395_A2390VC0395_A2392VC0395_A2391VC0395_A2401VC0395_A2400VC0395_A2399VC0395_A2398VC0395_A2393VC0395_A2397
VCHO VC0123VC0129VC0127VC0128VC0117VC0118VC0119VC0120VC0126VC0122
STYP99287 STM3943STM3950STM3948STM3949STM3935STM3936STM3937STM3938STM3947STM3939
SSP94122 SHEWANA3_0388SHEWANA3_0394SHEWANA3_0392SHEWANA3_0393SHEWANA3_0383SHEWANA3_0384SHEWANA3_0385SHEWANA3_0386SHEWANA3_0391SHEWANA3_0387
SSON300269 SSO_3980SSO_3985SSO_3983SSO_3984SSO_3974SSO_3975SSO_3976SSO_3977SSO_3982SSO_3978
SSED425104 SSED_4131SSED_4126SSED_4128SSED_4127SSED_4136SSED_4135SSED_4134SSED_4133SSED_4129SSED_4132
SPRO399741 SPRO_0180SPRO_0185SPRO_0183SPRO_0184SPRO_0175SPRO_0176SPRO_0177SPRO_0178SPRO_0182SPRO_0179
SPEA398579 SPEA_0375SPEA_0381SPEA_0379SPEA_0380SPEA_0370SPEA_0371SPEA_0372SPEA_0373SPEA_0378SPEA_0374
SONE211586 SO_4311SO_4305SO_4307SO_4306SO_4316SO_4315SO_4314SO_4313SO_4308SO_4312
SLOI323850 SHEW_0320SHEW_0326SHEW_0324SHEW_0325SHEW_0315SHEW_0316SHEW_0317SHEW_0318SHEW_0323SHEW_0319
SHIGELLA CYAYYIGBYIGAXERCHEMYHEMXHEMDHEMCDAPFCYAA
SHAL458817 SHAL_3915SHAL_3909SHAL_3911SHAL_3910SHAL_3920SHAL_3919SHAL_3918SHAL_3917SHAL_3912SHAL_3916
SFLE373384 SFV_3695SFV_3687SFV_3689SFV_3688SFV_3700SFV_3699SFV_3698SFV_3697SFV_3690SFV_3696
SFLE198214 AAN45316.1AAN45326.1AAN45324.1AAN45325.1AAN45311.1AAN45312.1AAN45313.1AAN45314.1AAN45323.1AAN45315.1
SENT454169 SEHA_C4270SEHA_C4278SEHA_C4276SEHA_C4277SEHA_C4265SEHA_C4266SEHA_C4267SEHA_C4268SEHA_C4275SEHA_C4269
SENT321314 SCH_3841SCH_3849SCH_3847SCH_3848SCH_3836SCH_3837SCH_3838SCH_3839SCH_3846SCH_3840
SENT295319 SPA3784SPA3791SPA3789SPA3790SPA3776SPA3777SPA3778SPA3779SPA3788SPA3780
SENT220341 STY3616STY3609STY3611STY3610STY3624STY3623STY3622STY3621STY3612STY3620
SENT209261 T3354T3347T3349T3348T3362T3361T3360T3359T3350T3358
SDYS300267 SDY_3938SDY_3933SDY_3935SDY_3934SDY_3944SDY_3943SDY_3942SDY_3941SDY_3936SDY_3940
SDEN318161 SDEN_0389SDEN_0394SDEN_0392SDEN_0393SDEN_0385SDEN_0386SDEN_0387SDEN_0388SDEN_0391
SBOY300268 SBO_3819SBO_3823SBO_3821SBO_3822SBO_3813SBO_3814SBO_3815SBO_3816SBO_3820SBO_3817
SBAL402882 SHEW185_3976SHEW185_3970SHEW185_3972SHEW185_3971SHEW185_3981SHEW185_3980SHEW185_3979SHEW185_3978SHEW185_3973SHEW185_3977
SBAL399599 SBAL195_4092SBAL195_4086SBAL195_4088SBAL195_4087SBAL195_4097SBAL195_4096SBAL195_4095SBAL195_4094SBAL195_4089SBAL195_4093
PSYR223283 PSPTO_0227PSPTO_0221PSPTO_0223PSPTO_0222PSPTO_0131PSPTO_0130PSPTO_0129PSPTO_0128PSPTO_0224PSPTO_0230
PSYR205918 PSYR_0180PSYR_0186PSYR_0184PSYR_0185PSYR_0059PSYR_0060PSYR_0061PSYR_0062PSYR_0183PSYR_0177
PSTU379731 PST_0513PST_0507PST_0509PST_0508PST_0527PST_0526PST_0525PST_0524PST_0510PST_0516
PPUT76869 PPUTGB1_5286PPUTGB1_5292PPUTGB1_5290PPUTGB1_5291PPUTGB1_0214PPUTGB1_0213PPUTGB1_0212PPUTGB1_0211PPUTGB1_5289PPUTGB1_5283
PPUT351746 PPUT_5134PPUT_5140PPUT_5138PPUT_5139PPUT_0211PPUT_0210PPUT_0209PPUT_0208PPUT_5137PPUT_5131
PPUT160488 PP_5225PP_5231PP_5229PP_5230PP_0189PP_0188PP_0187PP_0186PP_5228PP_5222
PPRO298386 PBPRA3524PBPRA3519PBPRA3521PBPRA3520PBPRA3531PBPRA3530PBPRA3529PBPRA3527PBPRA3522PBPRA3526
PMUL272843 PM1425PM1700PM1702PM1701PM1815PM1814PM1813PM1812PM1703PM1811
PMEN399739 PMEN_0269PMEN_0263PMEN_0265PMEN_0264PMEN_0283PMEN_0281PMEN_0280PMEN_0266PMEN_0273
PLUM243265 PLU4642PLU4637PLU4639PLU4638PLU4647PLU4646PLU4645PLU4644PLU4640PLU4643
PING357804 PING_0042PING_0009PING_0010PING_3639PING_3640PING_3641PING_3642PING_0040PING_0061
PFLU220664 PFL_6010PFL_6016PFL_6014PFL_6015PFL_5999PFL_6000PFL_6001PFL_6002PFL_6013PFL_6008
PFLU216595 PFLU5943PFLU5949PFLU5947PFLU5948PFLU5931PFLU5932PFLU5933PFLU5934PFLU5946PFLU5940
PFLU205922 PFL_5496PFL_5502PFL_5500PFL_5501PFL_5484PFL_5485PFL_5486PFL_5487PFL_5499PFL_5493
PENT384676 PSEEN5363PSEEN5369PSEEN5367PSEEN5368PSEEN5350PSEEN5351PSEEN5352PSEEN5353PSEEN5366PSEEN5359
PATL342610 PATL_0346PATL_4077PATL_4075PATL_4076PATL_0339PATL_0340PATL_0341PATL_0342PATL_4074
PAER208964 PA5275PA5281PA5279PA5280PA5257PA5258PA5259PA5260PA5278PA5272
PAER208963 PA14_69640PA14_69720PA14_69700PA14_69710PA14_69420PA14_69430PA14_69440PA14_69450PA14_69690PA14_69610
MSUC221988 MS2082MS0522MS1785MS0523MS0273MS0274MS0275MS0276MS1784MS0277
KPNE272620 GKPORF_B3653GKPORF_B3658GKPORF_B3656GKPORF_B3657GKPORF_B3647GKPORF_B3648GKPORF_B3649GKPORF_B3650GKPORF_B3655GKPORF_B3652
ESP42895 ENT638_3985ENT638_3980ENT638_3982ENT638_3981ENT638_3990ENT638_3989ENT638_3988ENT638_3987ENT638_3983ENT638_3986
EFER585054 EFER_3697EFER_3690EFER_3692EFER_3691EFER_3703EFER_3702EFER_3701EFER_3700EFER_3693EFER_3698
ECOO157 CYAYYIGBYIGAXERCHEMYHEMXHEMDHEMCDAPFCYAA
ECOL83334 ECS4738ECS4742ECS4740ECS4741ECS4732ECS4733ECS4734ECS4735ECS4739ECS4736
ECOL585397 ECED1_4492ECED1_4497ECED1_4495ECED1_4496ECED1_4486ECED1_4488ECED1_4489ECED1_4490ECED1_4494ECED1_4491
ECOL585057 ECIAI39_2983ECIAI39_2975ECIAI39_2977ECIAI39_2976ECIAI39_2988ECIAI39_2987ECIAI39_2986ECIAI39_2985ECIAI39_2978ECIAI39_2984
ECOL585056 ECUMN_4331ECUMN_4337ECUMN_4335ECUMN_4336ECUMN_4325ECUMN_4327ECUMN_4328ECUMN_4329ECUMN_4334ECUMN_4330
ECOL585055 EC55989_4277EC55989_4286EC55989_4284EC55989_4285EC55989_4272EC55989_4273EC55989_4274EC55989_4275EC55989_4283EC55989_4276
ECOL585035 ECS88_4230ECS88_4238ECS88_4236ECS88_4237ECS88_4224ECS88_4225ECS88_4226ECS88_4227ECS88_4235ECS88_4229
ECOL585034 ECIAI1_3994ECIAI1_4003ECIAI1_4001ECIAI1_4002ECIAI1_3988ECIAI1_3989ECIAI1_3990ECIAI1_3991ECIAI1_4000ECIAI1_3993
ECOL481805 ECOLC_4200ECOLC_4195ECOLC_4197ECOLC_4196ECOLC_4205ECOLC_4204ECOLC_4203ECOLC_4202ECOLC_4198ECOLC_4201
ECOL469008 ECBD_4235ECBD_4229ECBD_4231ECBD_4230ECBD_4240ECBD_4239ECBD_4238ECBD_4237ECBD_4232ECBD_4236
ECOL439855 ECSMS35_4172ECSMS35_4178ECSMS35_4176ECSMS35_4177ECSMS35_4167ECSMS35_4168ECSMS35_4169ECSMS35_4170ECSMS35_4175ECSMS35_4171
ECOL413997 ECB_03682ECB_03688ECB_03686ECB_03687ECB_03677ECB_03678ECB_03679ECB_03680ECB_03685ECB_03681
ECOL409438 ECSE_4088ECSE_4099ECSE_4097ECSE_4098ECSE_4083ECSE_4084ECSE_4085ECSE_4086ECSE_4096ECSE_4087
ECOL405955 APECO1_2671APECO1_2664APECO1_2666APECO1_2665APECO1_2676APECO1_2675APECO1_2674APECO1_2673APECO1_2667APECO1_2672
ECOL364106 UTI89_C4366UTI89_C4375UTI89_C4373UTI89_C4374UTI89_C4361UTI89_C4362UTI89_C4363UTI89_C4364UTI89_C4372UTI89_C4365
ECOL362663 ECP_4000ECP_4006ECP_4004ECP_4005ECP_3994ECP_3995ECP_3996ECP_3997ECP_4003ECP_3999
ECOL331111 ECE24377A_4322ECE24377A_4331ECE24377A_4329ECE24377A_4330ECE24377A_4317ECE24377A_4318ECE24377A_4319ECE24377A_4320ECE24377A_4328ECE24377A_4321
ECOL316407 ECK3801:JW3779:B3807ECK3807:JW3785:B3812ECK3805:JW3783:B3810ECK3806:JW3784:B3811ECK3796:JW3774:B3802ECK3797:JW3775:B3803ECK3798:JW3776:B3804ECK3799:JW5932:B3805ECK3804:JW5592:B3809ECK3800:JW3778:B3806
ECOL199310 C4726C4733C4731C4732C4721C4722C4723C4724C4730C4725
ECAR218491 ECA4185ECA4180ECA4182ECA4181ECA4191ECA4190ECA4189ECA4188ECA4183ECA4187
ASAL382245 ASA_3678ASA_3683ASA_3681ASA_3682ASA_3878ASA_3877ASA_3876ASA_3875ASA_3680ASA_3874
AHYD196024 AHA_0472AHA_0477AHA_0475AHA_0476AHA_0466AHA_0467AHA_0468AHA_0469AHA_0474AHA_0470


Organism features enriched in list (features available for 77 out of the 80 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0004881392
Arrangment:Pairs 0.000070528112
Arrangment:Singles 0.000508851286
Disease:Bubonic_plague 4.461e-666
Disease:Dysentery 4.461e-666
Disease:Gastroenteritis 1.867e-71013
Disease:Urinary_tract_infection 0.007769334
GC_Content_Range4:40-60 4.667e-2066224
GC_Content_Range4:60-100 0.007113711145
GC_Content_Range7:40-50 0.000059029117
GC_Content_Range7:50-60 6.595e-1137107
Genome_Size_Range5:2-4 1.065e-122197
Genome_Size_Range5:4-6 4.280e-2565184
Genome_Size_Range9:2-3 1.288e-62120
Genome_Size_Range9:4-5 8.128e-93296
Genome_Size_Range9:5-6 9.903e-113388
Gram_Stain:Gram_Neg 7.000e-1875333
Habitat:Multiple 0.000037739178
Habitat:Specialized 0.0033586153
Motility:No 6.957e-92151
Motility:Yes 2.097e-1162267
Optimal_temp.:20-30 0.006630747
Optimal_temp.:28-30 0.006630747
Oxygen_Req:Aerobic 0.000872413185
Oxygen_Req:Anaerobic 0.00002092102
Oxygen_Req:Facultative 5.091e-1861201
Pathogenic_in:Human 0.000040744213
Pathogenic_in:No 1.722e-612226
Pathogenic_in:Rodent 0.006630747
Shape:Rod 2.032e-1675347
Temp._range:Mesophilic 0.002507371473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 228
Effective number of orgs (counting one per cluster within 468 clusters): 189

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
WSUC273121 ncbi Wolinella succinogenes DSM 17401
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ951
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT31
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
OCAR504832 ncbi Oligotropha carboxidovorans OM51
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124441
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GFOR411154 ncbi Gramella forsetii KT08031
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a1
EFAE226185 ncbi Enterococcus faecalis V5831
DRAD243230 ncbi Deinococcus radiodurans R11
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSP376 Bradyrhizobium sp.1
BQUI283165 ncbi Bartonella quintana Toulouse1
BLON206672 ncbi Bifidobacterium longum NCC27051
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1101
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ABUT367737 ncbi Arcobacter butzleri RM40181
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  EG11653   EG11202   EG11201   EG11069   EG10434   EG10433   EG10430   EG10429   EG10209   EG10170   
ZMOB264203 ZMO1072
WSUC273121 WS1578
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX1964
TWHI218496
TWHI203267
TVOL273116
TTEN273068 TTE1514
TSP28240 TRQ2_1642
TSP1755 TETH514_1764
TROS309801 TRD_1125
TPSE340099 TETH39_1327
TPET390874 TPET_1576
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014 TK0477
TDEN326298 TMDEN_0863
TDEN243275
TACI273075
STOK273063
STHE322159 STER_0736
STHE299768 STR0696
STHE264199 STU0696
SSUI391296
SSUI391295
SSP387093 SUN_0634
SSOL273057
SSAP342451 SSP1094
SPYO370554 MGAS10750_SPY0515
SPYO370553 MGAS2096_SPY0507
SPYO370552 MGAS10270_SPY0489
SPYO370551 MGAS9429_SPY0486
SPYO319701 M28_SPY0475
SPYO293653 M5005_SPY0496
SPYO286636 M6_SPY0517
SPYO198466 SPYM3_0421
SPYO193567 SPS1434
SPYO186103 SPYM18_0664
SPYO160490 SPY0596
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007 SMU_774
SMAR399550
SHAE279808 SH1257
SGOR29390 SGO_0096
SERY405948 SACE_1753
SAGA211110 GBS0772
SAGA208435 SAG_0751
SAGA205921 SAK_0877
SACI330779
RSP101510 RHA1_RO02052
RSAL288705 RSAL33209_1097
RPAL316058 RPB_0359
RPAL316057 RPD_0514
RPAL316056 RPC_0215
RPAL316055 RPE_0321
RPAL258594 RPA0250
RALB246199 GRAORF_0789
PTOR263820
PRUM264731 GFRORF1958
PPEN278197 PEPE_1088
PMOB403833 PMOB_0253
PISL384616
PINT246198
PHOR70601 PH1936
PGIN242619
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844 PAB1224
OTSU357244 OTBS_0843
OCAR504832 OCAR_4263
NSP387092 NIS_1020
NSEN222891
NPHA348780
NFAR247156 NFA51690
NARO279238 SARO_1402
MTUB419947 MRA_0517
MTUB336982 TBFG_10521
MTHE349307 MTHE_0454
MTHE187420 MTH1334
MTBRV RV0510
MTBCDC MT0531
MSYN262723
MSP189918 MKMS_0690
MSP164757 MJLS_0670
MSP164756 MMCS_0677
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158 MMARC6_1738
MMAR426368 MMARC7_0164
MMAR402880 MMARC5_0724
MMAR368407 MEMAR_2160
MMAR267377 MMP0917
MLEP272631 ML2421
MLAB410358 MLAB_0560
MJAN243232 MJ_1119
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2316
MGIL350054 MFLV_0066
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_1226
MBOV410289 BCG_0553
MBOV233413 MB0523
MBAR269797
MART243272
MAEO419665 MAEO_0204
MACE188937
MABS561007 MAB_3992C
LXYL281090
LREU557436
LPLA220668 LP_1892
LMES203120 LEUM_1300
LLAC272623
LLAC272622 LACR_1604
LJOH257314 LJ_1082
LHEL405566 LHV_1052
LGAS324831 LGAS_0884
LDEL390333 LDB0843
LDEL321956 LBUL_0767
LCAS321967 LSEI_1368
LBRE387344 LVIS_0767
LBIF456481 LEPBI_I0585
LBIF355278 LBF_0565
LACI272621 LBA0959
KRAD266940 KRAD_0618
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP0222
HPYL357544 HPAG1_0240
HPY HP0237
HMUK485914
HMAR272569 RRNAC0241
HHEP235279 HH_1727
HBUT415426 HBUT_0836
HACI382638 HAC_1381
GFOR411154 GFO_0624
FSUC59374 FSU2315
FSP1855 FRANEAN1_1230
FSP106370 FRANCCI3_3514
FNUC190304
FNOD381764
FMAG334413
FJOH376686 FJOH_0018
FALN326424 FRAAL5707
EFAE226185 EF_1537
DRAD243230 DR_2352
DPSY177439
DGEO319795 DGEO_0093
CTRA471473
CTRA471472
CTET212717
CSUL444179 SMGWSS_247
CPRO264201 PC0442
CPNE182082 CPB0028
CPNE138677 CPJ0024
CPNE115713 CPN0024
CPNE115711 CP_0752
CPEL335992 SAR11_0257
CMUR243161 TC_0626
CMIC443906
CMIC31964
CMET456442 MBOO_2431
CMAQ397948 CMAQ_1121
CKOR374847
CKLU431943 CKL_1203
CJEJ407148 C8J_0506
CJEJ360109 JJD26997_1385
CJEJ354242 CJJ81176_0570
CJEJ195099 CJE_0649
CJEJ192222 CJ0545
CJEI306537 JK1177
CHUT269798 CHU_0492
CHOM360107 CHAB381_0899
CFET360106 CFF8240_0691
CFEL264202
CEFF196164
CDIP257309 DIP1442
CCUR360105 CCV52592_0767
CCON360104 CCC13826_1048
CCAV227941
CACE272562 CAC2624
CABO218497 CAB312
BXEN266265
BTUR314724
BTRI382640 BT_2682
BTHE226186 BT_0548
BSP376 BRADO0383
BQUI283165 BQ13480
BLON206672 BL1368
BJAP224911 BLL0477
BHER314723
BHEN283166 BH16600
BGAR290434
BBUR224326
BBAC360095 BARBAKC583_0019
BBAC264462 BD0045
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_2471
APHA212042 APH_0746
APER272557
ANAE240017
ALAI441768
AFUL224325 AF_0747
ABUT367737 ABU_0283
AAUR290340 AAUR_2440


Organism features enriched in list (features available for 214 out of the 228 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00082474792
Arrangment:Pairs 0.002484929112
Disease:Pharyngitis 0.000303088
Disease:Wide_range_of_infections 0.00001381111
Disease:bronchitis_and_pneumonitis 0.000303088
Endospores:No 2.442e-27138211
Endospores:Yes 2.492e-6553
GC_Content_Range4:0-40 1.094e-9112213
GC_Content_Range4:40-60 0.000013659224
GC_Content_Range4:60-100 0.006476942145
GC_Content_Range7:30-40 6.564e-889166
GC_Content_Range7:50-60 9.336e-915107
GC_Content_Range7:60-70 0.001125435134
Genome_Size_Range5:0-2 1.191e-19104155
Genome_Size_Range5:4-6 8.336e-1626184
Genome_Size_Range5:6-10 0.0036752947
Genome_Size_Range9:0-1 8.839e-62127
Genome_Size_Range9:1-2 1.465e-1383128
Genome_Size_Range9:2-3 0.009251854120
Genome_Size_Range9:4-5 5.669e-71596
Genome_Size_Range9:5-6 4.023e-81188
Genome_Size_Range9:6-8 0.0006975538
Gram_Stain:Gram_Neg 5.962e-1185333
Gram_Stain:Gram_Pos 0.000019876150
Habitat:Host-associated 0.004045689206
Habitat:Specialized 0.00232032953
Habitat:Terrestrial 0.0067573531
Motility:No 1.782e-884151
Motility:Yes 0.000174578267
Optimal_temp.:- 1.884e-668257
Optimal_temp.:37 0.000171455106
Oxygen_Req:Aerobic 0.006520956185
Oxygen_Req:Anaerobic 0.000043255102
Oxygen_Req:Microaerophilic 0.00652751218
Pathogenic_in:Animal 0.00199401466
Pathogenic_in:Swine 0.006467855
Salinity:Non-halophilic 0.000171455106
Shape:Coccus 2.744e-64982
Shape:Irregular_coccus 0.00001231517
Shape:Rod 1.233e-1189347
Shape:Sphere 0.00014741519
Shape:Spiral 6.318e-62534
Temp._range:Hyperthermophilic 5.454e-72023



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120660.6155
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50380.5577
GALACTITOLCAT-PWY (galactitol degradation)73460.5464
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45340.5231
PWY-46 (putrescine biosynthesis III)138620.5116
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218780.5031
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195730.4962
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121550.4786
PWY-5148 (acyl-CoA hydrolysis)227770.4771
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37280.4719
GLUTDEG-PWY (glutamate degradation II)194700.4672
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31250.4638
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176660.4625
SORBDEG-PWY (sorbitol degradation II)53330.4505
GLYCOCAT-PWY (glycogen degradation I)246770.4457
GLUCONSUPER-PWY (D-gluconate degradation)229740.4438
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)249770.4410
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)249770.4410
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91440.4390
ECASYN-PWY (enterobacterial common antigen biosynthesis)191660.4316
LYXMET-PWY (L-lyxose degradation)87420.4267
PWY-6196 (serine racemization)102460.4266
PWY0-1182 (trehalose degradation II (trehalase))70370.4256
RHAMCAT-PWY (rhamnose degradation)91430.4254
GLUTAMINDEG-PWY (glutamine degradation I)191650.4212
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96440.4209
PWY0-1356 (formate to dimethyl sulfoxide electron transfer)22190.4205
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212680.4129
MANNIDEG-PWY (mannitol degradation I)99440.4106
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112470.4076
FUC-RHAMCAT-PWY (superpathway of fucose and rhamnose degradation)19170.4063



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11202   EG11201   EG11069   EG10434   EG10433   EG10430   EG10429   EG10209   EG10170   
EG116530.9991950.9993150.9992650.9991340.9990680.999130.9991260.9993940.999388
EG112020.999470.9994930.9990430.9990480.9991150.9990250.9993350.999156
EG112010.9996320.9991370.9991520.9991830.9992080.9996670.999235
EG110690.9990760.9990440.9990790.9990330.9996920.999199
EG104340.9997310.9996790.9996350.9991170.999318
EG104330.9997990.999770.9990890.999352
EG104300.9998170.9991360.999376
EG104290.9990450.999445
EG102090.999265
EG10170



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PAIRWISE BLAST SCORES:

  EG11653   EG11202   EG11201   EG11069   EG10434   EG10433   EG10430   EG10429   EG10209   EG10170   
EG116530.0f0---------
EG11202-0.0f0--------
EG11201--0.0f0-------
EG11069---0.0f0------
EG10434----0.0f0-----
EG10433-----0.0f0----
EG10430------0.0f0---
EG10429-------0.0f0--
EG10209--------0.0f0-
EG10170---------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY-5188 (tetrapyrrole biosynthesis I) (degree of match pw to cand: 0.200, degree of match cand to pw: 0.200, average score: 0.709)
  Genes in pathway or complex:
   *in cand* 0.9994 0.9991 EG10430 (hemD) UROGENIIISYN-MONOMER (uroporphyrinogen III synthase)
   *in cand* 0.9994 0.9990 EG10429 (hemC) OHMETHYLBILANESYN-MONOMER (hydroxymethylbilane synthase)
             0.8005 0.3827 EG10428 (hemB) PORPHOBILSYNTH-MONOMER (porphobilinogen synthase)
             0.7180 0.3862 EG10432 (hemL) GSAAMINOTRANS-MONOMER (glutamate-1-semialdehyde aminotransferase)
             0.6519 0.0926 EG10427 (hemA) GLUTRNAREDUCT-MONOMER (HemA)
             0.0499 0.0017 EG10407 (gltX) GLURS-MONOMER (glutamyl-tRNA synthetase)
                NIL    NIL EG30032 (gltT) gltT-tRNA (tRNAgltT)
                NIL    NIL EG30033 (gltU) gltU-tRNA (tRNAgltU)
                NIL    NIL EG30034 (gltV) gltV-tRNA (tRNAgltV)
                NIL    NIL EG30035 (gltW) gltW-tRNA (tRNAgltW)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9992 EG10170 (cyaA) ADENYLATECYC-MONOMER (adenylate cyclase)
   *in cand* 0.9994 0.9990 EG10209 (dapF) DIAMINOPIMEPIM-MONOMER (diaminopimelate epimerase)
   *in cand* 0.9994 0.9990 EG10433 (hemX) HEMX-MONOMER (conserved protein)
   *in cand* 0.9994 0.9990 EG10434 (hemY) EG10434-MONOMER (predicted protoheme IX synthesis protein)
   *in cand* 0.9994 0.9990 EG11069 (xerC) EG11069-MONOMER (site-specific recombinase, acts on cer sequence of ColE1,  effects chromosome segregation at cell division)
   *in cand* 0.9994 0.9991 EG11201 (yigA) EG11201-MONOMER (conserved protein)
   *in cand* 0.9993 0.9990 EG11202 (yigB) EG11202-MONOMER (FMN phosphatase)
   *in cand* 0.9993 0.9991 EG11653 (cyaY) EG11653-MONOMER (frataxin, iron-binding and oxidizing protein)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10170 EG10429 EG10430 EG10433 EG10434 EG11653 (centered at EG10429)
EG10209 EG11069 EG11201 EG11202 (centered at EG11069)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11653   EG11202   EG11201   EG11069   EG10434   EG10433   EG10430   EG10429   EG10209   EG10170   
152/623189/623106/623269/623120/623147/623159/623418/623406/62395/623
AAEO224324:0:Tyes-------01113-
AAUR290340:2:Tyes---0------
AAVE397945:0:Tyes1952169-2-1184-11860-
ABAC204669:0:Tyes122------059-
ABAU360910:0:Tyes0----22322233223484-
ABOR393595:0:Tyes-16-15012313-
ABUT367737:0:Tyes-------0--
ACAU438753:0:Tyes-------03490-
ACEL351607:0:Tyes---1002---01244-
ACRY349163:8:Tyes-------02379-
ADEH290397:0:Tyes---2148---19390-
AEHR187272:0:Tyes-1914-225892590259125920-
AFER243159:0:Tyes530--0--263626353-
AFUL224325:0:Tyes--------0-
AHYD196024:0:Tyes611910012384
AMAR234826:0:Tyes-------0454-
AMAR329726:9:Tyes-0-----1923342-
AMET293826:0:Tyes-------02669-
AORE350688:0:Tyes-1391------0-
APHA212042:0:Tyes-------0--
APLE416269:0:Tyes108--838012354545
APLE434271:0:Tno111--860012355947
ASAL382245:5:Tyes05341981971961952194
ASP1667:3:Tyes---0------
ASP232721:2:Tyes08912869--2099-20972870-
ASP62928:0:Tyes3113--2-4114104090-
ASP62977:0:Tyes---2215---02217-
ASP76114:2:Tyes-01812--1641651661811-
AVAR240292:3:Tyes-984-----16910-
BABO262698:1:Tno-------042-
BAMB339670:2:Tno-0--------
BAMB339670:3:Tno0--2894-2225222522262892-
BAMB398577:2:Tno-0--------
BAMB398577:3:Tno0--2713-2048204820492711-
BAMY326423:0:Tyes-436-0---359766-
BANT260799:0:Tno-0-1454---18142282-
BANT261594:2:Tno-0-1458---18222266-
BANT568206:2:Tyes-0-2401---27773241-
BANT592021:2:Tno-0-1534---19112373-
BAPH198804:0:Tyes1-------0-
BAPH372461:0:Tyes1-------0-
BBAC264462:0:Tyes--------0-
BBAC360095:0:Tyes--------0-
BBRO257310:0:Tyes0-----20372036120-
BCAN483179:1:Tno-------046-
BCEN331271:2:Tno915--662-001660-
BCEN331272:2:Tyes-0--------
BCEN331272:3:Tyes0--2695-2034203420352693-
BCER226900:1:Tyes-0-1324---17012152-
BCER288681:0:Tno-0-1379---17412221-
BCER315749:1:Tyes---0---382728-
BCER405917:1:Tyes-0-1339---17232219-
BCER572264:1:Tno-0-1376---17462211-
BCIC186490:0:Tyes-56----1055-
BCLA66692:0:Tyes-150-0---8591164-
BFRA272559:1:Tyes---1598----0-
BFRA295405:0:Tno---1877----0-
BHAL272558:0:Tyes-0-310---9031272-
BHEN283166:0:Tyes--------0-
BJAP224911:0:Fyes--------0-
BLIC279010:0:Tyes-528-0---431862-
BLON206672:0:Tyes---0------
BMAL243160:1:Tno1799-22582257--102259-
BMAL320388:1:Tno892-625624--01626-
BMAL320389:1:Tyes1819-17971798--011796-
BMEL224914:1:Tno-------430-
BMEL359391:1:Tno-------042-
BOVI236:1:Tyes-------040-
BPAR257311:0:Tno0-----24712470117-
BPER257313:0:Tyes1018-----01491-
BPET94624:0:Tyes2880----2-02751-
BPSE272560:1:Tyes2982-10--8118102-
BPSE320372:1:Tno3481-10--8688672-
BPSE320373:1:Tno3390-10--8538522-
BPUM315750:0:Tyes-448-0---368807-
BQUI283165:0:Tyes--------0-
BSP107806:2:Tyes1------20-
BSP36773:1:Tyes-0--------
BSP36773:2:Tyes0--3000-2311231123122998-
BSP376:0:Tyes--------0-
BSUB:0:Tyes-560-0---479915-
BSUI204722:1:Tyes-------043-
BSUI470137:1:Tno-------044-
BTHA271848:1:Tno2808-10-7017017002-
BTHE226186:0:Tyes--------0-
BTHU281309:1:Tno-0-1329---16942138-
BTHU412694:1:Tno-0-1200---15391958-
BTRI382640:1:Tyes--------0-
BVIE269482:7:Tyes0--2780-2125212521262778-
BWEI315730:4:Tyes-0-1452---18332298-
CABO218497:0:Tyes---0------
CACE272562:1:Tyes--------0-
CAULO:0:Tyes-------03669-
CBEI290402:0:Tyes-1382-----0309-
CBLO203907:0:Tyes-0----321-
CBLO291272:0:Tno-0----321-
CBOT36826:1:Tno-0-----511016-
CBOT441770:0:Tyes-0-----53929-
CBOT441771:0:Tno-412-----0878-
CBOT441772:1:Tno-101-----0961-
CBOT498213:1:Tno-------0917-
CBOT508765:1:Tyes-------4760-
CBOT515621:2:Tyes-------01126-
CBOT536232:0:Tno-108-----01026-
CBUR227377:1:Tyes----106105102990-
CBUR360115:1:Tno----2084208503102-
CBUR434922:2:Tno----106105102990-
CCHL340177:0:Tyes---780---11850-
CCON360104:2:Tyes-------0--
CCUR360105:0:Tyes-------0--
CDES477974:0:Tyes---0---63328-
CDIF272563:1:Tyes-0-----1704868-
CDIP257309:0:Tyes--------0-
CFET360106:0:Tyes-------0--
CGLU196627:0:Tyes---84----0-
CHOM360107:1:Tyes-------0--
CHUT269798:0:Tyes-------0--
CHYD246194:0:Tyes---563---0276-
CJAP155077:0:Tyes--29702969306430653066306729710
CJEI306537:0:Tyes---0------
CJEJ192222:0:Tyes-------0--
CJEJ195099:0:Tno-------0--
CJEJ354242:2:Tyes-------0--
CJEJ360109:0:Tyes-------0--
CJEJ407148:0:Tno-------0--
CKLU431943:1:Tyes--------0-
CMAQ397948:0:Tyes-------0--
CMET456442:0:Tyes--------0-
CMUR243161:1:Tyes---0------
CNOV386415:0:Tyes-------7350-
CPEL335992:0:Tyes--------0-
CPER195102:1:Tyes-------0411-
CPER195103:0:Tno-0-----9201323-
CPER289380:3:Tyes-------0386-
CPHY357809:0:Tyes-------7310-
CPNE115711:1:Tyes---0------
CPNE115713:0:Tno---0------
CPNE138677:0:Tno---0------
CPNE182082:0:Tno---0------
CPRO264201:0:Fyes--------0-
CPSY167879:0:Tyes487-01236-
CRUT413404:0:Tyes------2812120-
CSAL290398:0:Tyes-108901237-
CSP501479:8:Fyes-------940-
CSP78:2:Tyes-------04786-
CSUL444179:0:Tyes--------0-
CTEP194439:0:Tyes---0---8101396-
CVES412965:0:Tyes------2602000-
CVIO243365:0:Tyes0--2389-1112142545-
DARO159087:0:Tyes16--2-3508350935100-
DDES207559:0:Tyes-------8380-
DETH243164:0:Tyes---0----18-
DGEO319795:1:Tyes-------0--
DHAF138119:0:Tyes---89---0519-
DNOD246195:0:Tyes---0---2461-
DOLE96561:0:Tyes---1545---02219-
DRAD243230:3:Tyes-------0--
DRED349161:0:Tyes---0---1070600-
DSHI398580:5:Tyes-------0526-
DSP216389:0:Tyes---0----24-
DSP255470:0:Tno---0----44-
DVUL882:1:Tyes---195---230-
ECAN269484:0:Tyes679------3390-
ECAR218491:0:Tyes502111109837
ECHA205920:0:Tyes252------6250-
ECOL199310:0:Tno5121011012394
ECOL316407:0:Tno602111109837
ECOL331111:6:Tno51311120123104
ECOL362663:0:Tno6121011012395
ECOL364106:1:Tno51412130123114
ECOL405955:2:Tyes5121011012394
ECOL409438:6:Tyes51614150123134
ECOL413997:0:Tno511910012384
ECOL439855:4:Tno511910012384
ECOL469008:0:Tno602111109837
ECOL481805:0:Tno50211098736
ECOL585034:0:Tno51412130123114
ECOL585035:0:Tno511910012384
ECOL585055:0:Tno51412130123114
ECOL585056:2:Tno51089012374
ECOL585057:0:Tno80211312111039
ECOL585397:0:Tno51089012374
ECOL83334:0:Tno51089012374
ECOLI:0:Tno511910012384
ECOO157:0:Tno511910012384
EFAE226185:3:Tyes---0------
EFER585054:1:Tyes7021121110938
ELIT314225:0:Tyes-------10610-
ERUM254945:0:Tyes-------3780-
ERUM302409:0:Tno-------3730-
ESP42895:1:Tyes50211098736
FALN326424:0:Tyes--------0-
FJOH376686:0:Tyes--------0-
FPHI484022:1:Tyes---456---0--
FRANT:0:Tno---1173---0--
FSP106370:0:Tyes--------0-
FSP1855:0:Tyes--------0-
FSUC59374:0:Tyes--------0-
FTUL351581:0:Tno---142---0--
FTUL393011:0:Tno---133---0--
FTUL393115:0:Tyes---1150---0--
FTUL401614:0:Tyes---1366---0--
FTUL418136:0:Tno---0---834--
FTUL458234:0:Tno---141---0--
GBET391165:0:Tyes-------9240-
GFOR411154:0:Tyes--------0-
GKAU235909:1:Tyes---0---330659-
GMET269799:1:Tyes---50---2400-
GOXY290633:5:Tyes-------4270-
GSUL243231:0:Tyes---0---277838-
GTHE420246:1:Tyes---0---324657-
GURA351605:0:Tyes---3627---03529-
GVIO251221:0:Tyes-------24270-
HACI382638:1:Tyes-------0--
HARS204773:0:Tyes20141558-1850-2101848-
HAUR316274:2:Tyes-0-1650---487--
HBUT415426:0:Tyes-------0--
HCHE349521:0:Tyes--1011012397
HDUC233412:0:Tyes---1670149314941495-0514
HHAL349124:0:Tyes-0-954778777776775952-
HHEP235279:0:Tyes-------0--
HINF281310:0:Tyes81--05051--10052
HINF374930:0:Tyes1125--117001--11042
HINF71421:0:Tno124--740---1471
HMAR272569:8:Tyes-0--------
HMOD498761:0:Tyes---0---14831641-
HNEP81032:0:Tyes-------0299-
HPY:0:Tno-------0--
HPYL357544:1:Tyes-------0--
HPYL85963:0:Tno-------0--
HSOM205914:1:Tyes1668--1262432115660
HSOM228400:0:Tno1558--01637163616351634811633
ILOI283942:0:Tyes-02198763-
JSP290400:1:Tyes-------35670-
JSP375286:0:Tyes22531769-208532102083-
KPNE272620:2:Tyes611910012385
KRAD266940:2:Fyes-------0--
LACI272621:0:Tyes---0------
LBIF355278:2:Tyes--------0-
LBIF456481:2:Tno--------0-
LBOR355276:1:Tyes---0----1378-
LBOR355277:1:Tno---1061----0-
LBRE387344:2:Tyes---0------
LCAS321967:1:Tyes---0------
LCHO395495:0:Tyes33112466-2-6436426410-
LDEL321956:0:Tyes---0------
LDEL390333:0:Tyes---0------
LGAS324831:0:Tyes---0------
LHEL405566:0:Tyes---0------
LINN272626:1:Tno---504---0--
LINT189518:1:Tyes---2284----0-
LINT267671:1:Tno---1505----0-
LINT363253:3:Tyes---0---770654-
LJOH257314:0:Tyes---0------
LLAC272622:5:Tyes-0--------
LMES203120:1:Tyes---0------
LMON169963:0:Tno---426---0--
LMON265669:0:Tyes---403---0--
LPLA220668:0:Tyes---0------
LPNE272624:0:Tno----23662365236423630-
LPNE297245:1:Fno----22542253225222510-
LPNE297246:1:Fyes----23642363236223610-
LPNE400673:0:Tno----01232532-
LSAK314315:0:Tyes-0-588------
LSPH444177:1:Tyes-0-1322---3455--
LWEL386043:0:Tyes---412---0--
MABS561007:1:Tyes-------0--
MAEO419665:0:Tyes--------0-
MAER449447:0:Tyes-------01692-
MAQU351348:2:Tyes--12130123118
MAVI243243:0:Tyes---0---1548--
MBOV233413:0:Tno-------0--
MBOV410289:0:Tno-------0--
MBUR259564:0:Tyes-------0--
MCAP243233:0:Tyes--1220972096209620950-
MEXT419610:0:Tyes-------21240-
MFLA265072:0:Tyes---1660123164-
MGIL350054:3:Tyes-------0--
MHUN323259:0:Tyes--------0-
MJAN243232:2:Tyes--------0-
MKAN190192:0:Tyes-225-----0--
MLAB410358:0:Tyes--------0-
MLEP272631:0:Tyes-------0--
MLOT266835:2:Tyes-------073-
MMAG342108:0:Tyes2822------42050-
MMAR267377:0:Tyes--------0-
MMAR368407:0:Tyes--------0-
MMAR394221:0:Tyes-------210-
MMAR402880:1:Tyes--------0-
MMAR426368:0:Tyes--------0-
MMAR444158:0:Tyes--------0-
MPET420662:1:Tyes6210-749-506-508751-
MSME246196:0:Tyes-------01771-
MSP164756:1:Tno-------0--
MSP164757:0:Tno-------0--
MSP189918:2:Tyes-------0--
MSP266779:3:Tyes-------0191-
MSP400668:0:Tyes-01-98762-
MSP409:2:Tyes-------03094-
MSTA339860:0:Tyes-0------317-
MSUC221988:0:Tyes18702681570269012315694
MTBCDC:0:Tno-------0--
MTBRV:0:Tno-------0--
MTHE187420:0:Tyes--------0-
MTHE264732:0:Tyes---137---3580-
MTHE349307:0:Tyes--------0-
MTUB336982:0:Tno-------0--
MTUB419947:0:Tyes-------0--
MVAN350058:0:Tyes---2412---01574-
MXAN246197:0:Tyes-217-339---02308-
NARO279238:0:Tyes--------0-
NEUR228410:0:Tyes--102642632622611294-
NEUT335283:2:Tyes--10461047-5225215200-
NFAR247156:2:Tyes-------0--
NGON242231:0:Tyes1897--0-300299100279-
NHAM323097:2:Tyes-------02898-
NMEN122586:0:Tno1386--1279-2362350218-
NMEN122587:0:Tyes0--112-486485230469-
NMEN272831:0:Tno1403--0-352351114336-
NMEN374833:0:Tno0--118-500499240483-
NMUL323848:3:Tyes--121431441451460-
NOCE323261:1:Tyes-1715121841831821810-
NSP103690:6:Tyes-------0175-
NSP35761:1:Tyes---2744---03340-
NSP387092:0:Tyes-------0--
NWIN323098:0:Tyes-------02329-
OANT439375:5:Tyes-------490-
OCAR504832:0:Tyes--------0-
OIHE221109:0:Tyes-792-0---227518-
OTSU357244:0:Fyes-------0--
PABY272844:0:Tyes-0--------
PACN267747:0:Tyes---511----0-
PAER208963:0:Tyes1925232401232216
PAER208964:0:Tno1824222301232115
PARC259536:0:Tyes---115--10114-
PATL342610:0:Tyes737703768376901233767-
PCAR338963:0:Tyes-766-0---24592470-
PCRY335284:1:Tyes---123---0122-
PDIS435591:0:Tyes-887------0-
PENT384676:0:Tyes131917180123169
PFLU205922:0:Tyes121816170123159
PFLU216595:1:Tyes121816170123159
PFLU220664:0:Tyes111715160123149
PHAL326442:1:Tyes6021-101093-
PHOR70601:0:Tyes-0--------
PING357804:0:Tyes320-134423443344434453051
PLUM243265:0:Fyes50211098736
PLUT319225:0:Tyes-------0533-
PMAR146891:0:Tyes-------0420-
PMAR167539:0:Tyes-------0461-
PMAR167540:0:Tyes-------0398-
PMAR167542:0:Tyes-------0420-
PMAR167546:0:Tyes-------0450-
PMAR167555:0:Tyes-------0444-
PMAR59920:0:Tno-------15380-
PMAR74546:0:Tyes-------0419-
PMAR74547:0:Tyes-------5580-
PMAR93060:0:Tyes-------0431-
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