CANDIDATE ID: 149

CANDIDATE ID: 149

NUMBER OF GENES: 10
AVERAGE SCORE:    9.9926984e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6364 (miaB) (b0661)
   Products of gene:
     - G6364-MONOMER (isopentenyl-adenosine A37 tRNA methylthiolase MiaB)
       Reactions:
        N-6-isopentyl adenosine-37 tRNA + 2 S-adenosyl-L-methionine + a sulfurated sulfur donor  =  S-adenosyl-L-homocysteine + 2-methylthio-N-6-isopentyl adenosine-37 tRNA + L-methionine + 5'-deoxyadenosine + an unsulfurated sulfur acceptor

- G6363 (ybeZ) (b0660)
   Products of gene:
     - G6363-MONOMER (predicted protein with nucleoside triphosphate hydrolase domain)

- G6362 (ybeY) (b0659)
   Products of gene:
     - G6362-MONOMER (conserved protein involved in translation)

- G6361 (ybeX) (b0658)
   Products of gene:
     - G6361-MONOMER (predicted ion transport protein)

- EG12851 (ybeL) (b0643)
   Products of gene:
     - EG12851-MONOMER (conserved protein)

- EG11412 (holA) (b0640)
   Products of gene:
     - EG11412-MONOMER (DNA polymerase III, δ subunit)
     - CPLX0-3801 (DNA polymerase III, preinitiation complex)
     - CPLX0-3803 (DNA polymerase III, holoenzyme)

- EG10855 (lptE) (b0641)
   Products of gene:
     - EG10855-MONOMER (rare lipoprotein LptE)
     - CPLX0-7628 (outer membrane LPS assembly complex)

- EG10607 (mrdB) (b0634)
   Products of gene:
     - EG10607-MONOMER (rod shape-determining membrane protein; sensitivity to radiation and drugs)

- EG10532 (leuS) (b0642)
   Products of gene:
     - LEUS-MONOMER (leucyl-tRNA synthetase)
       Reactions:
        tRNAleu + L-leucine + ATP  ->  L-leucyl-tRNAleu + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)

- EG10168 (lnt) (b0657)
   Products of gene:
     - EG10168-MONOMER (apolipoprotein N-acyltransferase)



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 90
Effective number of orgs (counting one per cluster within 468 clusters): 52

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175810
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295310
YPES386656 ncbi Yersinia pestis Pestoides F10
YPES377628 ncbi Yersinia pestis Nepal51610
YPES360102 ncbi Yersinia pestis Antiqua10
YPES349746 ncbi Yersinia pestis Angola10
YPES214092 ncbi Yersinia pestis CO9210
YPES187410 ncbi Yersinia pestis KIM 1010
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808110
VVUL216895 ncbi Vibrio vulnificus CMCP610
VVUL196600 ncbi Vibrio vulnificus YJ01610
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 221063310
VFIS312309 ncbi Vibrio fischeri ES11410
VCHO345073 ncbi Vibrio cholerae O39510
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696110
TTUR377629 ncbi Teredinibacter turnerae T79019
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252599
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT210
SSP94122 ncbi Shewanella sp. ANA-310
SSON300269 ncbi Shigella sonnei Ss04610
SSED425104 ncbi Shewanella sediminis HAW-EB310
SPRO399741 ncbi Serratia proteamaculans 56810
SPEA398579 ncbi Shewanella pealeana ATCC 70034510
SONE211586 ncbi Shewanella oneidensis MR-110
SLOI323850 ncbi Shewanella loihica PV-410
SHIGELLA ncbi Shigella flexneri 2a str. 2457T10
SHAL458817 ncbi Shewanella halifaxensis HAW-EB410
SGLO343509 ncbi Sodalis glossinidius morsitans10
SFLE373384 ncbi Shigella flexneri 5 str. 840110
SFLE198214 ncbi Shigella flexneri 2a str. 30110
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47610
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915010
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1810
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty210
SDYS300267 ncbi Shigella dysenteriae Sd19710
SDEN318161 ncbi Shewanella denitrificans OS21710
SDEG203122 ncbi Saccharophagus degradans 2-4010
SBOY300268 ncbi Shigella boydii Sb22710
SBAL402882 ncbi Shewanella baltica OS18510
SBAL399599 ncbi Shewanella baltica OS19510
PPRO298386 ncbi Photobacterium profundum SS910
PMUL272843 ncbi Pasteurella multocida multocida Pm709
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO19
PING357804 ncbi Psychromonas ingrahamii 379
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC12510
PATL342610 ncbi Pseudoalteromonas atlantica T6c9
NMUL323848 ncbi Nitrosospira multiformis ATCC 251969
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E9
MSP400668 ncbi Marinomonas sp. MWYL19
MCAP243233 ncbi Methylococcus capsulatus Bath9
MAQU351348 ncbi Marinobacter aquaeolei VT810
LPNE297245 ncbi Legionella pneumophila Lens9
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 19
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857810
ILOI283942 ncbi Idiomarina loihiensis L2TR9
HSOM228400 ncbi Haemophilus somnus 23369
HSOM205914 ncbi Haemophilus somnus 129PT9
HHAL349124 ncbi Halorhodospira halophila SL19
HCHE349521 ncbi Hahella chejuensis KCTC 23969
ESP42895 Enterobacter sp.10
EFER585054 ncbi Escherichia fergusonii ATCC 3546910
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H710
ECOL585397 ncbi Escherichia coli ED1a10
ECOL585057 ncbi Escherichia coli IAI3910
ECOL585056 ncbi Escherichia coli UMN02610
ECOL585055 ncbi Escherichia coli 5598910
ECOL585035 ncbi Escherichia coli S8810
ECOL585034 ncbi Escherichia coli IAI110
ECOL481805 ncbi Escherichia coli ATCC 873910
ECOL469008 ncbi Escherichia coli BL21(DE3)10
ECOL439855 ncbi Escherichia coli SMS-3-510
ECOL413997 ncbi Escherichia coli B str. REL60610
ECOL409438 ncbi Escherichia coli SE1110
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8910
ECOL362663 ncbi Escherichia coli 53610
ECOL331111 ncbi Escherichia coli E24377A10
ECOL316407 ncbi Escherichia coli K-12 substr. W311010
ECOL199310 ncbi Escherichia coli CFT07310
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104310
CPSY167879 ncbi Colwellia psychrerythraea 34H10
CJAP155077 Cellvibrio japonicus9
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44910
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL039
APLE416269 ncbi Actinobacillus pleuropneumoniae L209
AHYD196024 Aeromonas hydrophila dhakensis10
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232709
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-19


Names of the homologs of the genes in the group in each of these orgs
  G6364   G6363   G6362   G6361   EG12851   EG11412   EG10855   EG10607   EG10532   EG10168   
YPSE349747 YPSIP31758_2915YPSIP31758_2916YPSIP31758_2917YPSIP31758_2918YPSIP31758_2924YPSIP31758_2928YPSIP31758_2927YPSIP31758_2950YPSIP31758_2926YPSIP31758_2919
YPSE273123 YPTB1113YPTB1112YPTB1111YPTB1110YPTB1104YPTB1101YPTB1102YPTB1096YPTB1103YPTB1109
YPES386656 YPDSF_2632YPDSF_2633YPDSF_2634YPDSF_2636YPDSF_2642YPDSF_2645YPDSF_2644YPDSF_2650YPDSF_2643YPDSF_2637
YPES377628 YPN_1106YPN_1105YPN_1104YPN_1102YPN_1096YPN_1093YPN_1094YPN_1088YPN_1095YPN_1101
YPES360102 YPA_2477YPA_2478YPA_2479YPA_2480YPA_2486YPA_2489YPA_2488YPA_2494YPA_2487YPA_2481
YPES349746 YPANGOLA_A1829YPANGOLA_A1830YPANGOLA_A1832YPANGOLA_A1833YPANGOLA_A1840YPANGOLA_A1844YPANGOLA_A1843YPANGOLA_A1850YPANGOLA_A1842YPANGOLA_A1834
YPES214092 YPO2620YPO2619YPO2618YPO2617YPO2611YPO2608YPO2609YPO2603YPO2610YPO2616
YPES187410 Y1195Y1194Y1193Y1191Y1185Y1182Y1183Y1177Y1184Y1190
YENT393305 YE2985YE2986YE2987YE2988YE2995YE2998YE2997YE3003YE2996YE2989
VVUL216895 VV1_0266VV1_0267VV1_0268VV1_0269VV1_0271VV1_0275VV1_0274VV1_0279VV1_0272VV1_0270
VVUL196600 VV0917VV0916VV0915VV0914VV0912VV0909VV0910VV0905VV0911VV0913
VPAR223926 VP0733VP0732VP0731VP0730VP0728VP0725VP0726VP0721VP0727VP0729
VFIS312309 VF0759VF0758VF0757VF0756VF0754VF0751VF0752VF0747VF0753VF0755
VCHO345073 VC0395_A0484VC0395_A0483VC0395_A0482VC0395_A0481VC0395_A0479VC0395_A0476VC0395_A0477VC0395_A0472VC0395_A0478VC0395_A0480
VCHO VC0962VC0961VC0960VC0959VC0957VC0953VC0954VC0949VC0956VC0958
TTUR377629 TERTU_3874TERTU_3875TERTU_3876TERTU_3877TERTU_3887TERTU_3886TERTU_0604TERTU_3885TERTU_3878
TDEN292415 TBD_2706TBD_2705TBD_2704TBD_2703TBD_2443TBD_2444TBD_0264TBD_2445TBD_2584
STYP99287 STM0670STM0669STM0668STM0667STM0653STM0646STM0647STM0639STM0648STM0666
SSP94122 SHEWANA3_1008SHEWANA3_1007SHEWANA3_1006SHEWANA3_1005SHEWANA3_1002SHEWANA3_0999SHEWANA3_1000SHEWANA3_0994SHEWANA3_1001SHEWANA3_1004
SSON300269 SSO_0615SSO_0614SSO_0613SSO_0612SSO_0597SSO_0594SSO_0595SSO_0588SSO_0596SSO_0611
SSED425104 SSED_3471SSED_3472SSED_3473SSED_3474SSED_3478SSED_3481SSED_3480SSED_3486SSED_3479SSED_3475
SPRO399741 SPRO_1220SPRO_1218SPRO_1217SPRO_1216SPRO_1208SPRO_1205SPRO_1206SPRO_1200SPRO_1207SPRO_1215
SPEA398579 SPEA_3137SPEA_3138SPEA_3139SPEA_3140SPEA_3142SPEA_3145SPEA_3144SPEA_3150SPEA_3143SPEA_3141
SONE211586 SO_1181SO_1180SO_1179SO_1178SO_1175SO_1172SO_1173SO_1167SO_1174SO_1177
SLOI323850 SHEW_2923SHEW_2924SHEW_2925SHEW_2926SHEW_2928SHEW_2931SHEW_2930SHEW_2936SHEW_2929SHEW_2927
SHIGELLA YLEAYBEZYBEYYBEXYBELHOLARLPBMRDBLEUSLNT
SHAL458817 SHAL_3222SHAL_3223SHAL_3224SHAL_3225SHAL_3227SHAL_3230SHAL_3229SHAL_3235SHAL_3228SHAL_3226
SGLO343509 SG0811SG0810SG0809SG0808SG0804SG0801SG0802SG0796SG0803SG0807
SFLE373384 SFV_0666SFV_0667SFV_0668SFV_0669SFV_0683SFV_0686SFV_0685SFV_0692SFV_0684SFV_0670
SFLE198214 AAN42258.1AAN42259.1AAN42260.1AAN42261.1AAN42274.1AAN42277.1AAN42276.1AAN42283.1AAN42275.1AAN42262.1
SENT454169 SEHA_C0788SEHA_C0787SEHA_C0786SEHA_C0785SEHA_C0770SEHA_C0762SEHA_C0763SEHA_C0755SEHA_C0764SEHA_C0784
SENT321314 SCH_0698SCH_0697SCH_0696SCH_0695SCH_0682SCH_0676SCH_0677SCH_0669SCH_0678SCH_0694
SENT295319 SPA2070SPA2071SPA2072SPA2073SPA2081SPA2088SPA2087SPA2095SPA2086SPA2074
SENT220341 STY0716STY0715STY0714STY0712STY0704STY0697STY0698STY0690STY0699STY0711
SENT209261 T2203T2204T2205T2206T2214T2221T2220T2228T2219T2207
SDYS300267 SDY_0597SDY_0596SDY_0595SDY_0594SDY_0567SDY_0562SDY_0563SDY_0556SDY_0564SDY_0593
SDEN318161 SDEN_0815SDEN_0814SDEN_0813SDEN_0812SDEN_0798SDEN_0795SDEN_0796SDEN_0854SDEN_0797SDEN_0811
SDEG203122 SDE_3300SDE_3301SDE_3302SDE_3303SDE_0534SDE_3310SDE_3309SDE_3340SDE_3308SDE_3304
SBOY300268 SBO_0525SBO_0524SBO_0523SBO_0522SBO_0507SBO_0504SBO_0505SBO_0498SBO_0506SBO_0521
SBAL402882 SHEW185_3303SHEW185_3304SHEW185_3305SHEW185_3306SHEW185_3310SHEW185_3313SHEW185_3312SHEW185_3318SHEW185_3311SHEW185_3307
SBAL399599 SBAL195_3439SBAL195_3440SBAL195_3441SBAL195_3442SBAL195_3446SBAL195_3449SBAL195_3448SBAL195_3454SBAL195_3447SBAL195_3443
PPRO298386 PBPRA2878PBPRA2879PBPRA2880PBPRA2881PBPRA2884PBPRA2887PBPRA2886PBPRA2891PBPRA2885PBPRA2882
PMUL272843 PM1001PM1046PM1045PM1033PM1216PM1215PM1925PM1214PM1032
PLUM243265 PLU1312PLU1311PLU1310PLU1309PLU1301PLU1302PLU1296PLU1303PLU1308
PING357804 PING_0535PING_0534PING_0533PING_0532PING_1189PING_1190PING_1134PING_1191PING_0531
PHAL326442 PSHAA1046PSHAA1045PSHAA1044PSHAA1043PSHAA1032PSHAA1029PSHAA1030PSHAA1024PSHAA1031PSHAA1042
PATL342610 PATL_2206PATL_2207PATL_2208PATL_2209PATL_1564PATL_1565PATL_1559PATL_1566PATL_2210
NMUL323848 NMUL_A2692NMUL_A2696NMUL_A2697NMUL_A2698NMUL_A0513NMUL_A0512NMUL_A0316NMUL_A0511NMUL_A0552
MSUC221988 MS1690MS1682MS1680MS0651MS0332MS0337MS1831MS0338MS0652
MSP400668 MMWYL1_2909MMWYL1_2910MMWYL1_2911MMWYL1_2912MMWYL1_2917MMWYL1_2916MMWYL1_2847MMWYL1_2915MMWYL1_2913
MCAP243233 MCA_1459MCA_1458MCA_1457MCA_1456MCA_1451MCA_1452MCA_0104MCA_1453MCA_1455
MAQU351348 MAQU_2738MAQU_2739MAQU_2740MAQU_2741MAQU_2743MAQU_2746MAQU_2745MAQU_2412MAQU_2744MAQU_2742
LPNE297245 LPL1287LPL1600LPL1601LPL1602LPL1299LPL1300LPL1325LPL1301LPL1302
LPNE272624 LPG1334LPG1441LPG1440LPG1439LPG1346LPG1347LPG1374LPG1348LPG1349
KPNE272620 GKPORF_B5110GKPORF_B5109GKPORF_B5108GKPORF_B5107GKPORF_B5099GKPORF_B5096GKPORF_B5097GKPORF_B5090GKPORF_B5098GKPORF_B5106
ILOI283942 IL0941IL0942IL0943IL0944IL0949IL0948IL0954IL0947IL0945
HSOM228400 HSM_1572HSM_0614HSM_0615HSM_0111HSM_0469HSM_0468HSM_0192HSM_0467HSM_0112
HSOM205914 HS_1155HS_0345HS_0346HS_0237HS_1555HS_1556HS_0320HS_1557HS_0238
HHAL349124 HHAL_0893HHAL_0892HHAL_0891HHAL_0890HHAL_2146HHAL_2143HHAL_1009HHAL_2145HHAL_0889
HCHE349521 HCH_05348HCH_05349HCH_05350HCH_05351HCH_05353HCH_05357HCH_05842HCH_05355HCH_05352
ESP42895 ENT638_1187ENT638_1186ENT638_1185ENT638_1184ENT638_1177ENT638_1174ENT638_1175ENT638_1169ENT638_1176ENT638_1183
EFER585054 EFER_2441EFER_2442EFER_2443EFER_2444EFER_2463EFER_2466EFER_2465EFER_2471EFER_2464EFER_2445
ECOO157 YLEAYBEZYBEYYBEXYBELHOLARLPBMRDBLEUSLNT
ECOL83334 ECS0699ECS0698ECS0697ECS0696ECS0681ECS0678ECS0679ECS0672ECS0680ECS0695
ECOL585397 ECED1_0652ECED1_0651ECED1_0650ECED1_0649ECED1_0640ECED1_0637ECED1_0638ECED1_0631ECED1_0639ECED1_0648
ECOL585057 ECIAI39_0628ECIAI39_0627ECIAI39_0626ECIAI39_0625ECIAI39_0618ECIAI39_0615ECIAI39_0616ECIAI39_0609ECIAI39_0617ECIAI39_0624
ECOL585056 ECUMN_0754ECUMN_0753ECUMN_0752ECUMN_0751ECUMN_0737ECUMN_0734ECUMN_0735ECUMN_0728ECUMN_0736ECUMN_0750
ECOL585055 EC55989_0656EC55989_0655EC55989_0654EC55989_0653EC55989_0635EC55989_0632EC55989_0633EC55989_0626EC55989_0634EC55989_0652
ECOL585035 ECS88_0696ECS88_0695ECS88_0694ECS88_0693ECS88_0685ECS88_0682ECS88_0683ECS88_0676ECS88_0684ECS88_0692
ECOL585034 ECIAI1_0645ECIAI1_0644ECIAI1_0643ECIAI1_0642ECIAI1_0627ECIAI1_0624ECIAI1_0625ECIAI1_0618ECIAI1_0626ECIAI1_0641
ECOL481805 ECOLC_2984ECOLC_2985ECOLC_2986ECOLC_2987ECOLC_3002ECOLC_3005ECOLC_3004ECOLC_3011ECOLC_3003ECOLC_2988
ECOL469008 ECBD_2990ECBD_2991ECBD_2992ECBD_2993ECBD_3008ECBD_3011ECBD_3010ECBD_3017ECBD_3009ECBD_2994
ECOL439855 ECSMS35_0684ECSMS35_0682ECSMS35_0681ECSMS35_0680ECSMS35_0663ECSMS35_0660ECSMS35_0661ECSMS35_0654ECSMS35_0662ECSMS35_0678
ECOL413997 ECB_00629ECB_00628ECB_00627ECB_00626ECB_00612ECB_00609ECB_00610ECB_00603ECB_00611ECB_00625
ECOL409438 ECSE_0732ECSE_0731ECSE_0730ECSE_0729ECSE_0712ECSE_0709ECSE_0710ECSE_0702ECSE_0711ECSE_0728
ECOL405955 APECO1_1402APECO1_1403APECO1_1404APECO1_1405APECO1_1413APECO1_1415APECO1_1414APECO1_1421APECO1_14132APECO1_1406
ECOL364106 UTI89_C0659UTI89_C0658UTI89_C0657UTI89_C0656UTI89_C0646UTI89_C0643UTI89_C0644UTI89_C0636UTI89_C0645UTI89_C0655
ECOL362663 ECP_0684ECP_0683ECP_0682ECP_0681ECP_0673ECP_0670ECP_0671ECP_0664ECP_0672ECP_0680
ECOL331111 ECE24377A_0690ECE24377A_0689ECE24377A_0688ECE24377A_0687ECE24377A_0669ECE24377A_0666ECE24377A_0667ECE24377A_0660ECE24377A_0668ECE24377A_0686
ECOL316407 ECK0653:JW0658:B0661ECK0652:JW0657:B0660ECK0651:JW0656:B0659ECK0650:JW0655:B0658ECK0636:JW0638:B0643ECK0633:JW0635:B0640ECK0634:JW0636:B0641ECK0627:JW0629:B0634ECK0635:JW0637:B0642ECK0649:JW0654:B0657
ECOL199310 C0747C0745C0744C0743C0734C0731C0732C0725C0733C0742
ECAR218491 ECA1319ECA1318ECA1317ECA1316ECA1310ECA1307ECA1308ECA1302ECA1309ECA1315
CPSY167879 CPS_3572CPS_3573CPS_3574CPS_3575CPS_1723CPS_1720CPS_1721CPS_1714CPS_1722CPS_3576
CJAP155077 CJA_1640CJA_1638CJA_1637CJA_1636CJA_0452CJA_0453CJA_0790CJA_0454CJA_1635
ASAL382245 ASA_1074ASA_1073ASA_1072ASA_1071ASA_1069ASA_1066ASA_1067ASA_1061ASA_1068ASA_1070
APLE434271 APJL_1339APJL_0339APJL_0692APJL_0390APJL_0886APJL_0885APJL_1631APJL_0884APJL_0389
APLE416269 APL_1325APL_0324APL_0694APL_0372APL_0874APL_0873APL_1598APL_0872APL_0371
AHYD196024 AHA_3241AHA_3242AHA_3243AHA_3244AHA_3246AHA_3250AHA_3248AHA_3255AHA_3247AHA_3245
AFER243159 AFE_2444AFE_2443AFE_2442AFE_2441AFE_2580AFE_2579AFE_0536AFE_2578AFE_2440
AEHR187272 MLG_0394MLG_0395MLG_0396MLG_0397MLG_0399MLG_0402MLG_0173MLG_0400MLG_0398


Organism features enriched in list (features available for 86 out of the 90 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0018741592
Arrangment:Pairs 0.000237929112
Disease:Bubonic_plague 8.847e-666
Disease:Dysentery 8.847e-666
Disease:Gastroenteritis 5.708e-71013
GC_Content_Range4:0-40 1.200e-116213
GC_Content_Range4:40-60 2.538e-2576224
GC_Content_Range4:60-100 1.137e-74145
GC_Content_Range7:30-40 1.149e-76166
GC_Content_Range7:40-50 9.424e-735117
GC_Content_Range7:50-60 5.169e-1241107
GC_Content_Range7:60-70 7.811e-74134
Genome_Size_Range5:2-4 0.000405916197
Genome_Size_Range5:4-6 4.660e-2368184
Genome_Size_Range9:2-3 0.008810910120
Genome_Size_Range9:4-5 1.122e-83496
Genome_Size_Range9:5-6 6.999e-103488
Gram_Stain:Gram_Neg 1.900e-2084333
Motility:No 4.366e-93151
Motility:Yes 1.014e-965267
Optimal_temp.:20-30 0.009858447
Optimal_temp.:28-30 0.009858447
Oxygen_Req:Aerobic 2.488e-610185
Oxygen_Req:Anaerobic 3.530e-62102
Oxygen_Req:Facultative 1.673e-2472201
Pathogenic_in:Human 0.002058343213
Pathogenic_in:No 0.000476520226
Pathogenic_in:Rodent 0.009858447
Shape:Coccus 0.0000117182
Shape:Rod 4.080e-1177347
Temp._range:Psychrophilic 0.000474569



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 85
Effective number of orgs (counting one per cluster within 468 clusters): 76

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSUI391296 ncbi Streptococcus suis 98HAH331
SSOL273057 ncbi Sulfolobus solfataricus P20
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CCAV227941 ncbi Chlamydophila caviae GPIC1
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G6364   G6363   G6362   G6361   EG12851   EG11412   EG10855   EG10607   EG10532   EG10168   
UURE95667
UURE95664 UUR10_0561
UPAR505682
UMET351160
TVOL273116
TPEN368408
TKOD69014
TACI273075
STOK273063
SSUI391296 SSU98_1337
SSOL273057
SPYO370553 MGAS2096_SPY0154
SPYO293653 M5005_SPY0386
SMAR399550
SACI330779
RALB246199 GRAORF_0928
PTOR263820
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
NPHA348780 NP1414A
MTHE349307
MTHE187420
MSYN262723 MS53_0389
MSTA339860
MSED399549
MPUL272635
MPNE272634
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_1977
MMAR267377
MLAB410358 MLAB_1278
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_3011
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
LPLA220668 LP_1970
LGAS324831 LGAS_1120
IHOS453591
HWAL362976 HQ3705A
HSP64091 VNG6302C
HSAL478009 OE5193F
HMUK485914 HMUK_0760
HMAR272569 RRNAC2600
HBUT415426
FJOH376686 FJOH_1539
DETH243164 DET_0194
CTRA471473 CTLON_0791
CTRA471472 CTL0796
CSUL444179
CPNE182082 CPB0679
CPNE138677 CPJ0653
CPNE115713 CPN0653
CPNE115711 CP_0094
CMUR243161 TC_0821
CMET456442 MBOO_1891
CMAQ397948
CKOR374847
CFEL264202 CF0919
CCAV227941 CCA_00087
CABO218497
BXEN266265
AYEL322098
AURANTIMONAS
APER272557
AFUL224325


Organism features enriched in list (features available for 80 out of the 85 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.003144159
Arrangment:Pairs 0.00854668112
Disease:Pharyngitis 9.190e-888
Disease:bronchitis_and_pneumonitis 9.190e-888
Endospores:No 1.435e-1055211
GC_Content_Range4:60-100 0.00024248145
GC_Content_Range7:0-30 0.00151111447
GC_Content_Range7:40-50 0.001879626117
GC_Content_Range7:60-70 0.00088858134
Genome_Size_Range5:0-2 6.093e-1653155
Genome_Size_Range5:4-6 6.528e-104184
Genome_Size_Range9:0-1 1.356e-71527
Genome_Size_Range9:1-2 2.551e-838128
Genome_Size_Range9:4-5 0.0001758396
Genome_Size_Range9:5-6 0.0000120188
Gram_Stain:Gram_Neg 0.000010328333
Gram_Stain:Gram_Pos 8.494e-66150
Habitat:Aquatic 0.00334432191
Habitat:Multiple 1.050e-76178
Habitat:Specialized 2.539e-62053
Optimal_temp.:- 9.219e-716257
Optimal_temp.:100 0.002500633
Optimal_temp.:35-40 0.002500633
Optimal_temp.:37 0.009371222106
Optimal_temp.:85 0.000332044
Oxygen_Req:Aerobic 0.000051811185
Oxygen_Req:Anaerobic 1.412e-732102
Pathogenic_in:Human 0.000763317213
Pathogenic_in:No 0.001351443226
Pathogenic_in:Swine 0.001442045
Salinity:Extreme_halophilic 0.000692857
Shape:Irregular_coccus 5.878e-141617
Shape:Rod 6.862e-924347
Shape:Sphere 8.108e-111519
Temp._range:Hyperthermophilic 2.181e-111723
Temp._range:Mesophilic 0.000012250473
Temp._range:Thermophilic 0.00932951035



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 2
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CBLO203907 ncbi Candidatus Blochmannia floridanus 0.00221366568
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN 0.00335396928


Names of the homologs of the genes in the group in each of these orgs
  G6364   G6363   G6362   G6361   EG12851   EG11412   EG10855   EG10607   EG10532   EG10168   
CBLO203907 BFL317BFL316BFL315BFL311BFL312BFL308BFL313BFL314
CBLO291272 BPEN_325BPEN_324BPEN_323BPEN_319BPEN_320BPEN_316BPEN_321BPEN_322


Organism features enriched in list (features available for 2 out of the 2 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
GC_Content_Range7:0-30 0.0063718247
Genome_Size_Range9:0-1 0.0020689227



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50420.5844
GALACTITOLCAT-PWY (galactitol degradation)73510.5743
AST-PWY (arginine degradation II (AST pathway))120650.5518
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218880.5409
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.5203
GLYCOCAT-PWY (glycogen degradation I)246860.4713
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37290.4570
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176690.4419
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195730.4414
LYXMET-PWY (L-lyxose degradation)87460.4404
ECASYN-PWY (enterobacterial common antigen biosynthesis)191720.4397
SORBDEG-PWY (sorbitol degradation II)53340.4311
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31250.4309
PWY-46 (putrescine biosynthesis III)138590.4295
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81430.4249
MANNIDEG-PWY (mannitol degradation I)99480.4208
LACTOSEUTIL-PWY (lactose degradation II)53330.4148
THREONINE-DEG2-PWY (threonine degradation II)214740.4142
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91450.4118
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121530.4099
PWY-5148 (acyl-CoA hydrolysis)227760.4099
PWY-5921 (L-glutamine biosynthesis II (tRNA-dependent))40110-.4569



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6363   G6362   G6361   EG12851   EG11412   EG10855   EG10607   EG10532   EG10168   
G63640.9998860.9998630.9997360.9989370.9990710.9989330.9986970.9990580.999745
G63630.9999930.99990.998980.9991280.9990160.9987650.9992580.999792
G63620.9999310.9990220.999180.9990250.9987550.9993040.999836
G63610.9990760.9991990.9990850.9985190.9992740.999895
EG128510.9992450.9992420.9988870.9993890.999143
EG114120.9996080.9991250.9998110.999282
EG108550.9990350.9996020.999197
EG106070.9986590.998662
EG105320.999397
EG10168



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PAIRWISE BLAST SCORES:

  G6364   G6363   G6362   G6361   EG12851   EG11412   EG10855   EG10607   EG10532   EG10168   
G63640.0f0---------
G6363-0.0f0--------
G6362--0.0f0-------
G6361---0.0f0------
EG12851----0.0f0-----
EG11412-----0.0f0----
EG10855------0.0f0---
EG10607-------0.0f0--
EG10532--------0.0f0-
EG10168---------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10168 G6361 G6362 G6363 G6364 (centered at G6362)
EG10607 (centered at EG10607)
EG10532 EG10855 EG11412 EG12851 (centered at EG10532)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6364   G6363   G6362   G6361   EG12851   EG11412   EG10855   EG10607   EG10532   EG10168   
418/623411/623417/623371/62373/623193/623101/623351/623405/623367/623
AAEO224324:0:Tyes195945946----0-567
AAUR290340:2:Tyes-210----17-
AAVE397945:0:Tyes29333733383282-3639-0-3281
ABAC204669:0:Tyes5462226-2223---13801021
ABAU360910:0:Tyes0123-1666-234416644
ABOR393595:0:Tyes0123-15-22136
ABUT367737:0:Tyes--477-----0-
ACAU438753:0:Tyes0-2-----5624
ACEL351607:0:Tyes735373839---0-457
ACRY349163:8:Tyes13351336-1338---63920390
ADEH290397:0:Tyes03733711502---143379369
AEHR187272:0:Tyes220221222223225228-0226224
AFER243159:0:Tyes1878187718761875-20102009020081874
AHYD196024:0:Tyes01235971464
ALAI441768:0:Tyes--400------
AMAR234826:0:Tyes280-906----0--
AMAR329726:9:Tyes3594-392----4100745
AMET293826:0:Tyes1176165416520---22948-
ANAE240017:0:Tyes0128-130-----322
AORE350688:0:Tyes8725655670---1415--
APHA212042:0:Tyes0-375-------
APLE416269:0:Tyes1003036848-550549130554847
APLE434271:0:Tno986033351-522521130452050
ASAL382245:5:Tyes13121110856079
ASP1667:3:Tyes-2-0----17-
ASP232721:2:Tyes3007308230830-3307-3029-1
ASP62928:0:Tyes612613614615-3095-03093616
ASP62977:0:Tyes2554255525561-2502-173725000
ASP76114:2:Tyes4321-1784-99817860
AVAR240292:3:Tyes25515730----18052160-
BABO262698:1:Tno326327328-----0330
BAFZ390236:2:Fyes---0-----186
BAMB339670:3:Tno2251225222532255-2-267502256
BAMB398577:3:Tno2063206420652068-2-250502069
BAMY326423:0:Tyes178856854799---01217-
BANT260799:0:Tno0578576----1381009-
BANT261594:2:Tno0595593----1341027-
BANT568206:2:Tyes14139023900----04354-
BANT592021:2:Tno0603601----1381053-
BAPH198804:0:Tyes0-12-4--3-
BAPH372461:0:Tyes0-1-----2-
BBAC264462:0:Tyes767-198----1108-0
BBAC360095:0:Tyes0123-----4
BBRO257310:0:Tyes4321-2040-320920380
BBUR224326:21:Fno---0-----176
BCAN483179:1:Tno346347348-----0350
BCEN331271:2:Tno1936193719381941-2-235401942
BCEN331272:3:Tyes2036203720382041-2-245502042
BCER226900:1:Tyes0520518----136949-
BCER288681:0:Tno0519517----139955-
BCER315749:1:Tyes2608578550---3951227-
BCER405917:1:Tyes0557555----1481036-
BCER572264:1:Tno0533531----140977-
BCIC186490:0:Tyes2-1--145-1481440
BCLA66692:0:Tyes51902----6851211-
BFRA272559:1:Tyes0--1467---3794--
BFRA295405:0:Tno0--1548---4131--
BGAR290434:2:Fyes---0-----182
BHAL272558:0:Tyes101502----12091938-
BHEN283166:0:Tyes4321-----0
BHER314723:0:Fyes---0-----174
BJAP224911:0:Fyes170169168167----0166
BLIC279010:0:Tyes1241201520133132---02455-
BLON206672:0:Tyes559-10------
BMAL243160:1:Tno67666462-2047-0204961
BMAL320388:1:Tno2297229823002302-0-236622303
BMAL320389:1:Tyes67666462-267-026961
BMEL224914:1:Tno176917681767-----01765
BMEL359391:1:Tno313314315-----0317
BOVI236:1:Tyes293294295-----0297
BPAR257311:0:Tno3210-556-2785558-
BPER257313:0:Tyes588587586585-1481-01483-
BPET94624:0:Tyes3265326632673268-2924-029223269
BPSE272560:1:Tyes492491490488-2769-02771487
BPSE320372:1:Tno548547545543-3215-03217542
BPSE320373:1:Tno528527524--3133-03135522
BPUM315750:0:Tyes190841839----01234-
BQUI283165:0:Tyes4321-----0
BSP107806:2:Tyes0-12-4--3-
BSP36773:2:Tyes2324232523262328-2-276902329
BSP376:0:Tyes0123----1434
BSUB:0:Tyes185105510531693---01565-
BSUI204722:1:Tyes335337338-----0340
BSUI470137:0:Tno--------0-
BSUI470137:1:Tno012------4
BTHA271848:1:Tno448447446444-1061-01059443
BTHE226186:0:Tyes1734--0---2361--
BTHU281309:1:Tno0527525----140951-
BTHU412694:1:Tno0482480----138880-
BTRI382640:1:Tyes4321-----0
BTUR314724:0:Fyes---0-----174
BVIE269482:7:Tyes2152215321542156-2-255502157
BWEI315730:4:Tyes1384198619840---15752397-
CACE272562:1:Tyes580--168---0--
CAULO:0:Tyes--2----151837520
CBEI290402:0:Tyes955--2347---0--
CBLO203907:0:Tyes-987-34056
CBLO291272:0:Tno-987-34056
CBOT36826:1:Tno1155------0--
CBOT441770:0:Tyes1063------0--
CBOT441771:0:Tno116------0--
CBOT441772:1:Tno1080--2237---0--
CBOT498213:1:Tno1095--2312---0--
CBOT508765:1:Tyes0--1622---629--
CBOT515621:2:Tyes1263------0--
CBOT536232:0:Tno1655--2987---4670-
CBUR227377:1:Tyes18171614-7-0913
CBUR360115:1:Tno18171614-7-0913
CBUR434922:2:Tno0124-13-19115
CCAV227941:1:Tyes---------0
CCHL340177:0:Tyes-512-----0-765
CCON360104:2:Tyes--01344---1013691696
CCUR360105:0:Tyes---1209---0666-
CDES477974:0:Tyes014841482----8921297-
CDIF272563:1:Tyes847131013091729---01391-
CDIP257309:0:Tyes223486485484-----0
CEFF196164:0:Fyes245592591590-----0
CFEL264202:1:Tyes---------0
CFET360106:0:Tyes---0---1045557552
CGLU196627:0:Tyes435780779778-----0
CHOM360107:1:Tyes-------8050-
CHUT269798:0:Tyes435--0-----1844
CHYD246194:0:Tyes10136567----033-
CJAP155077:0:Tyes1146114411431142-0132321141
CJEI306537:0:Tyes5330-2-----347
CJEJ192222:0:Tyes--0----1126936940
CJEJ195099:0:Tno--0----126310821086
CJEJ354242:2:Tyes--0----1102915919
CJEJ360109:0:Tyes--0----291474470
CJEJ407148:0:Tno--0----1143949953
CKLU431943:1:Tyes691--1951---0--
CMET456442:0:Tyes---0------
CMIC31964:2:Tyes0508507506-----465
CMIC443906:2:Tyes467012-----121
CMUR243161:1:Tyes---------0
CNOV386415:0:Tyes587--0------
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ZMOB264203:0:Tyes4210---291-201



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