CANDIDATE ID: 150

CANDIDATE ID: 150

NUMBER OF GENES: 10
AVERAGE SCORE:    9.9920907e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6361 (ybeX) (b0658)
   Products of gene:
     - G6361-MONOMER (predicted ion transport protein)

- G6350 (nadD) (b0639)
   Products of gene:
     - NICONUCADENYLYLTRAN-MONOMER (nicotinate-mononucleotide adenylyltransferase)
       Reactions:
        ATP + nicotinate mononucleotide  ->  diphosphate + nicotinate adenine dinucleotide
         In pathways
         PWY-3502 (PWY-3502)
         PWY0-781 (aspartate superpathway)
         NADSYN-PWY (NADSYN-PWY)
         PYRIDNUCSAL-PWY (NAD salvage pathway I)
         PYRIDNUCSYN-PWY (NAD biosynthesis I (from aspartate))
         PWY-5381 (PWY-5381)
         PWY-5653 (PWY-5653)

- EG12851 (ybeL) (b0643)
   Products of gene:
     - EG12851-MONOMER (conserved protein)

- EG11412 (holA) (b0640)
   Products of gene:
     - EG11412-MONOMER (DNA polymerase III, δ subunit)
     - CPLX0-3801 (DNA polymerase III, preinitiation complex)
     - CPLX0-3803 (DNA polymerase III, holoenzyme)

- EG11255 (ybeB) (b0637)
   Products of gene:
     - EG11255-MONOMER (predicted protein)

- EG11254 (rlmH) (b0636)
   Products of gene:
     - EG11254-MONOMER (23S rRNA m3Ψ1915 methyltransferase)
     - CPLX0-7423 (23S rRNA m3Ψ1915 methyltransferase)
       Reactions:
        S-adenosyl-L-methionine + pseudouridine1915 in 23S rRNA  =  S-adenosyl-L-homocysteine + N3-methylpseudouridine1915 in 23S rRNA

- EG10855 (lptE) (b0641)
   Products of gene:
     - EG10855-MONOMER (rare lipoprotein LptE)
     - CPLX0-7628 (outer membrane LPS assembly complex)

- EG10607 (mrdB) (b0634)
   Products of gene:
     - EG10607-MONOMER (rod shape-determining membrane protein; sensitivity to radiation and drugs)

- EG10532 (leuS) (b0642)
   Products of gene:
     - LEUS-MONOMER (leucyl-tRNA synthetase)
       Reactions:
        tRNAleu + L-leucine + ATP  ->  L-leucyl-tRNAleu + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)

- EG10168 (lnt) (b0657)
   Products of gene:
     - EG10168-MONOMER (apolipoprotein N-acyltransferase)



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 83
Effective number of orgs (counting one per cluster within 468 clusters): 47

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175810
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295310
YPES386656 ncbi Yersinia pestis Pestoides F10
YPES377628 ncbi Yersinia pestis Nepal51610
YPES360102 ncbi Yersinia pestis Antiqua10
YPES349746 ncbi Yersinia pestis Angola10
YPES214092 ncbi Yersinia pestis CO9210
YPES187410 ncbi Yersinia pestis KIM 1010
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808110
VVUL216895 ncbi Vibrio vulnificus CMCP69
VVUL196600 ncbi Vibrio vulnificus YJ0169
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106339
VFIS312309 ncbi Vibrio fischeri ES1149
VCHO345073 ncbi Vibrio cholerae O3959
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169619
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252599
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT210
SSP94122 ncbi Shewanella sp. ANA-310
SSON300269 ncbi Shigella sonnei Ss04610
SSED425104 ncbi Shewanella sediminis HAW-EB310
SPRO399741 ncbi Serratia proteamaculans 56810
SPEA398579 ncbi Shewanella pealeana ATCC 70034510
SONE211586 ncbi Shewanella oneidensis MR-110
SLOI323850 ncbi Shewanella loihica PV-410
SHIGELLA ncbi Shigella flexneri 2a str. 2457T10
SHAL458817 ncbi Shewanella halifaxensis HAW-EB410
SGLO343509 ncbi Sodalis glossinidius morsitans10
SFLE373384 ncbi Shigella flexneri 5 str. 840110
SFLE198214 ncbi Shigella flexneri 2a str. 30110
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47610
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915010
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1810
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty210
SDYS300267 ncbi Shigella dysenteriae Sd19710
SDEN318161 ncbi Shewanella denitrificans OS21710
SDEG203122 ncbi Saccharophagus degradans 2-4010
SBOY300268 ncbi Shigella boydii Sb22710
SBAL402882 ncbi Shewanella baltica OS18510
SBAL399599 ncbi Shewanella baltica OS19510
PPRO298386 ncbi Photobacterium profundum SS99
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO19
PING357804 ncbi Psychromonas ingrahamii 379
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC12510
PATL342610 ncbi Pseudoalteromonas atlantica T6c9
NMUL323848 ncbi Nitrosospira multiformis ATCC 251969
MSP400668 ncbi Marinomonas sp. MWYL19
MCAP243233 ncbi Methylococcus capsulatus Bath9
MAQU351348 ncbi Marinobacter aquaeolei VT810
LPNE297245 ncbi Legionella pneumophila Lens9
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 19
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857810
ILOI283942 ncbi Idiomarina loihiensis L2TR9
HHAL349124 ncbi Halorhodospira halophila SL19
HCHE349521 ncbi Hahella chejuensis KCTC 23969
ESP42895 Enterobacter sp.10
EFER585054 ncbi Escherichia fergusonii ATCC 3546910
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H710
ECOL585397 ncbi Escherichia coli ED1a10
ECOL585057 ncbi Escherichia coli IAI3910
ECOL585056 ncbi Escherichia coli UMN02610
ECOL585055 ncbi Escherichia coli 5598910
ECOL585035 ncbi Escherichia coli S8810
ECOL585034 ncbi Escherichia coli IAI110
ECOL481805 ncbi Escherichia coli ATCC 873910
ECOL469008 ncbi Escherichia coli BL21(DE3)10
ECOL439855 ncbi Escherichia coli SMS-3-510
ECOL413997 ncbi Escherichia coli B str. REL60610
ECOL409438 ncbi Escherichia coli SE1110
ECOL405955 ncbi Escherichia coli APEC O19
ECOL364106 ncbi Escherichia coli UTI8910
ECOL362663 ncbi Escherichia coli 53610
ECOL331111 ncbi Escherichia coli E24377A10
ECOL316407 ncbi Escherichia coli K-12 substr. W311010
ECOL199310 ncbi Escherichia coli CFT07310
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104310
CPSY167879 ncbi Colwellia psychrerythraea 34H10
CJAP155077 Cellvibrio japonicus9
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44910
AHYD196024 Aeromonas hydrophila dhakensis10
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232709
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-19


Names of the homologs of the genes in the group in each of these orgs
  G6361   G6350   EG12851   EG11412   EG11255   EG11254   EG10855   EG10607   EG10532   EG10168   
YPSE349747 YPSIP31758_2918YPSIP31758_2929YPSIP31758_2924YPSIP31758_2928YPSIP31758_2947YPSIP31758_2948YPSIP31758_2927YPSIP31758_2950YPSIP31758_2926YPSIP31758_2919
YPSE273123 YPTB1110YPTB1100YPTB1104YPTB1101YPTB1099YPTB1098YPTB1102YPTB1096YPTB1103YPTB1109
YPES386656 YPDSF_2636YPDSF_2646YPDSF_2642YPDSF_2645YPDSF_2647YPDSF_2648YPDSF_2644YPDSF_2650YPDSF_2643YPDSF_2637
YPES377628 YPN_1102YPN_1092YPN_1096YPN_1093YPN_1091YPN_1090YPN_1094YPN_1088YPN_1095YPN_1101
YPES360102 YPA_2480YPA_2490YPA_2486YPA_2489YPA_2491YPA_2492YPA_2488YPA_2494YPA_2487YPA_2481
YPES349746 YPANGOLA_A1833YPANGOLA_A1845YPANGOLA_A1840YPANGOLA_A1844YPANGOLA_A1846YPANGOLA_A1847YPANGOLA_A1843YPANGOLA_A1850YPANGOLA_A1842YPANGOLA_A1834
YPES214092 YPO2617YPO2607YPO2611YPO2608YPO2606YPO2605YPO2609YPO2603YPO2610YPO2616
YPES187410 Y1191Y1181Y1185Y1182Y1180Y1179Y1183Y1177Y1184Y1190
YENT393305 YE2988YE2999YE2995YE2998YE3000YE3001YE2997YE3003YE2996YE2989
VVUL216895 VV1_0269VV1_0271VV1_0275VV1_0276VV1_0277VV1_0274VV1_0279VV1_0272VV1_0270
VVUL196600 VV0914VV0912VV0909VV0908VV0907VV0910VV0905VV0911VV0913
VPAR223926 VP0730VP0728VP0725VP0724VP0723VP0726VP0721VP0727VP0729
VFIS312309 VF0756VF0754VF0751VF0750VF0749VF0752VF0747VF0753VF0755
VCHO345073 VC0395_A0481VC0395_A0479VC0395_A0476VC0395_A0475VC0395_A0474VC0395_A0477VC0395_A0472VC0395_A0478VC0395_A0480
VCHO VC0959VC0957VC0953VC0952VC0951VC0954VC0949VC0956VC0958
TDEN292415 TBD_2703TBD_2441TBD_2443TBD_2440TBD_2439TBD_2444TBD_0264TBD_2445TBD_2584
STYP99287 STM0667STM0645STM0653STM0646STM0642STM0641STM0647STM0639STM0648STM0666
SSP94122 SHEWANA3_1005SHEWANA3_0998SHEWANA3_1002SHEWANA3_0999SHEWANA3_0997SHEWANA3_0996SHEWANA3_1000SHEWANA3_0994SHEWANA3_1001SHEWANA3_1004
SSON300269 SSO_0612SSO_0593SSO_0597SSO_0594SSO_0591SSO_0590SSO_0595SSO_0588SSO_0596SSO_0611
SSED425104 SSED_3474SSED_3482SSED_3478SSED_3481SSED_3483SSED_3484SSED_3480SSED_3486SSED_3479SSED_3475
SPRO399741 SPRO_1216SPRO_1204SPRO_1208SPRO_1205SPRO_1203SPRO_1202SPRO_1206SPRO_1200SPRO_1207SPRO_1215
SPEA398579 SPEA_3140SPEA_3146SPEA_3142SPEA_3145SPEA_3147SPEA_3148SPEA_3144SPEA_3150SPEA_3143SPEA_3141
SONE211586 SO_1178SO_1171SO_1175SO_1172SO_1170SO_1169SO_1173SO_1167SO_1174SO_1177
SLOI323850 SHEW_2926SHEW_2932SHEW_2928SHEW_2931SHEW_2933SHEW_2934SHEW_2930SHEW_2936SHEW_2929SHEW_2927
SHIGELLA YBEXYBENYBELHOLAYBEBYBEARLPBMRDBLEUSLNT
SHAL458817 SHAL_3225SHAL_3231SHAL_3227SHAL_3230SHAL_3232SHAL_3233SHAL_3229SHAL_3235SHAL_3228SHAL_3226
SGLO343509 SG0808SG0800SG0804SG0801SG0799SG0798SG0802SG0796SG0803SG0807
SFLE373384 SFV_0669SFV_0687SFV_0683SFV_0686SFV_0689SFV_0690SFV_0685SFV_0692SFV_0684SFV_0670
SFLE198214 AAN42261.1AAN42278.1AAN42274.1AAN42277.1AAN42280.1AAN42281.1AAN42276.1AAN42283.1AAN42275.1AAN42262.1
SENT454169 SEHA_C0785SEHA_C0761SEHA_C0770SEHA_C0762SEHA_C0758SEHA_C0757SEHA_C0763SEHA_C0755SEHA_C0764SEHA_C0784
SENT321314 SCH_0695SCH_0675SCH_0682SCH_0676SCH_0672SCH_0671SCH_0677SCH_0669SCH_0678SCH_0694
SENT295319 SPA2073SPA2089SPA2081SPA2088SPA2092SPA2093SPA2087SPA2095SPA2086SPA2074
SENT220341 STY0712STY0696STY0704STY0697STY0693STY0692STY0698STY0690STY0699STY0711
SENT209261 T2206T2222T2214T2221T2225T2226T2220T2228T2219T2207
SDYS300267 SDY_0594SDY_0561SDY_0567SDY_0562SDY_0559SDY_0558SDY_0563SDY_0556SDY_0564SDY_0593
SDEN318161 SDEN_0812SDEN_0794SDEN_0798SDEN_0795SDEN_0857SDEN_0856SDEN_0796SDEN_0854SDEN_0797SDEN_0811
SDEG203122 SDE_3303SDE_3344SDE_0534SDE_3310SDE_3343SDE_3342SDE_3309SDE_3340SDE_3308SDE_3304
SBOY300268 SBO_0522SBO_0503SBO_0507SBO_0504SBO_0501SBO_0500SBO_0505SBO_0498SBO_0506SBO_0521
SBAL402882 SHEW185_3306SHEW185_3314SHEW185_3310SHEW185_3313SHEW185_3315SHEW185_3316SHEW185_3312SHEW185_3318SHEW185_3311SHEW185_3307
SBAL399599 SBAL195_3442SBAL195_3450SBAL195_3446SBAL195_3449SBAL195_3451SBAL195_3452SBAL195_3448SBAL195_3454SBAL195_3447SBAL195_3443
PPRO298386 PBPRA2881PBPRA2884PBPRA2887PBPRA2888PBPRA2889PBPRA2886PBPRA2891PBPRA2885PBPRA2882
PLUM243265 PLU1309PLU1300PLU1301PLU1299PLU1298PLU1302PLU1296PLU1303PLU1308
PING357804 PING_0532PING_1188PING_1189PING_1137PING_1136PING_1190PING_1134PING_1191PING_0531
PHAL326442 PSHAA1043PSHAA1028PSHAA1032PSHAA1029PSHAA1027PSHAA1026PSHAA1030PSHAA1024PSHAA1031PSHAA1042
PATL342610 PATL_2209PATL_1563PATL_1564PATL_1562PATL_1561PATL_1565PATL_1559PATL_1566PATL_2210
NMUL323848 NMUL_A2698NMUL_A0360NMUL_A0513NMUL_A0361NMUL_A0362NMUL_A0512NMUL_A0316NMUL_A0511NMUL_A0552
MSP400668 MMWYL1_2912MMWYL1_2851MMWYL1_2917MMWYL1_2850MMWYL1_2849MMWYL1_2916MMWYL1_2847MMWYL1_2915MMWYL1_2913
MCAP243233 MCA_1456MCA_1879MCA_1451MCA_2027MCA_0377MCA_1452MCA_0104MCA_1453MCA_1455
MAQU351348 MAQU_2741MAQU_2416MAQU_2743MAQU_2746MAQU_2415MAQU_2414MAQU_2745MAQU_2412MAQU_2744MAQU_2742
LPNE297245 LPL1602LPL1298LPL1299LPL1328LPL1327LPL1300LPL1325LPL1301LPL1302
LPNE272624 LPG1439LPG1345LPG1346LPG1377LPG1376LPG1347LPG1374LPG1348LPG1349
KPNE272620 GKPORF_B5107GKPORF_B5095GKPORF_B5099GKPORF_B5096GKPORF_B5093GKPORF_B5092GKPORF_B5097GKPORF_B5090GKPORF_B5098GKPORF_B5106
ILOI283942 IL0944IL0950IL0949IL0951IL0952IL0948IL0954IL0947IL0945
HHAL349124 HHAL_0890HHAL_2141HHAL_2146HHAL_2143HHAL_2140HHAL_2139HHAL_1009HHAL_2145HHAL_0889
HCHE349521 HCH_05351HCH_05846HCH_05353HCH_05357HCH_05845HCH_05844HCH_05842HCH_05355HCH_05352
ESP42895 ENT638_1184ENT638_1173ENT638_1177ENT638_1174ENT638_1172ENT638_1171ENT638_1175ENT638_1169ENT638_1176ENT638_1183
EFER585054 EFER_2444EFER_2467EFER_2463EFER_2466EFER_2468EFER_2469EFER_2465EFER_2471EFER_2464EFER_2445
ECOO157 YBEXYBENYBELHOLAYBEBYBEARLPBMRDBLEUSLNT
ECOL83334 ECS0696ECS0677ECS0681ECS0678ECS0675ECS0674ECS0679ECS0672ECS0680ECS0695
ECOL585397 ECED1_0649ECED1_0636ECED1_0640ECED1_0637ECED1_0634ECED1_0633ECED1_0638ECED1_0631ECED1_0639ECED1_0648
ECOL585057 ECIAI39_0625ECIAI39_0614ECIAI39_0618ECIAI39_0615ECIAI39_0612ECIAI39_0611ECIAI39_0616ECIAI39_0609ECIAI39_0617ECIAI39_0624
ECOL585056 ECUMN_0751ECUMN_0733ECUMN_0737ECUMN_0734ECUMN_0731ECUMN_0730ECUMN_0735ECUMN_0728ECUMN_0736ECUMN_0750
ECOL585055 EC55989_0653EC55989_0631EC55989_0635EC55989_0632EC55989_0629EC55989_0628EC55989_0633EC55989_0626EC55989_0634EC55989_0652
ECOL585035 ECS88_0693ECS88_0681ECS88_0685ECS88_0682ECS88_0679ECS88_0678ECS88_0683ECS88_0676ECS88_0684ECS88_0692
ECOL585034 ECIAI1_0642ECIAI1_0623ECIAI1_0627ECIAI1_0624ECIAI1_0621ECIAI1_0620ECIAI1_0625ECIAI1_0618ECIAI1_0626ECIAI1_0641
ECOL481805 ECOLC_2987ECOLC_3006ECOLC_3002ECOLC_3005ECOLC_3008ECOLC_3009ECOLC_3004ECOLC_3011ECOLC_3003ECOLC_2988
ECOL469008 ECBD_2993ECBD_3012ECBD_3008ECBD_3011ECBD_3014ECBD_3015ECBD_3010ECBD_3017ECBD_3009ECBD_2994
ECOL439855 ECSMS35_0680ECSMS35_0659ECSMS35_0663ECSMS35_0660ECSMS35_0657ECSMS35_0656ECSMS35_0661ECSMS35_0654ECSMS35_0662ECSMS35_0678
ECOL413997 ECB_00626ECB_00608ECB_00612ECB_00609ECB_00606ECB_00605ECB_00610ECB_00603ECB_00611ECB_00625
ECOL409438 ECSE_0729ECSE_0708ECSE_0712ECSE_0709ECSE_0705ECSE_0704ECSE_0710ECSE_0702ECSE_0711ECSE_0728
ECOL405955 APECO1_1405APECO1_1416APECO1_1413APECO1_1415APECO1_1419APECO1_1414APECO1_1421APECO1_14132APECO1_1406
ECOL364106 UTI89_C0656UTI89_C0642UTI89_C0646UTI89_C0643UTI89_C0639UTI89_C0638UTI89_C0644UTI89_C0636UTI89_C0645UTI89_C0655
ECOL362663 ECP_0681ECP_0669ECP_0673ECP_0670ECP_0667ECP_0666ECP_0671ECP_0664ECP_0672ECP_0680
ECOL331111 ECE24377A_0687ECE24377A_0665ECE24377A_0669ECE24377A_0666ECE24377A_0663ECE24377A_0662ECE24377A_0667ECE24377A_0660ECE24377A_0668ECE24377A_0686
ECOL316407 ECK0650:JW0655:B0658ECK0632:JW0634:B0639ECK0636:JW0638:B0643ECK0633:JW0635:B0640ECK0630:JW5090:B0637ECK0629:JW0631:B0636ECK0634:JW0636:B0641ECK0627:JW0629:B0634ECK0635:JW0637:B0642ECK0649:JW0654:B0657
ECOL199310 C0743C0730C0734C0731C0728C0727C0732C0725C0733C0742
ECAR218491 ECA1316ECA1306ECA1310ECA1307ECA1305ECA1304ECA1308ECA1302ECA1309ECA1315
CPSY167879 CPS_3575CPS_1718CPS_1723CPS_1720CPS_1717CPS_1716CPS_1721CPS_1714CPS_1722CPS_3576
CJAP155077 CJA_1636CJA_0786CJA_0452CJA_0787CJA_0788CJA_0453CJA_0790CJA_0454CJA_1635
ASAL382245 ASA_1071ASA_1065ASA_1069ASA_1066ASA_1064ASA_1063ASA_1067ASA_1061ASA_1068ASA_1070
AHYD196024 AHA_3244AHA_3251AHA_3246AHA_3250AHA_3252AHA_3253AHA_3248AHA_3255AHA_3247AHA_3245
AFER243159 AFE_2441AFE_0161AFE_2580AFE_0160AFE_0159AFE_2579AFE_0536AFE_2578AFE_2440
AEHR187272 MLG_0397MLG_0404MLG_0399MLG_0402MLG_0405MLG_0406MLG_0173MLG_0400MLG_0398


Organism features enriched in list (features available for 79 out of the 83 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000644292
Arrangment:Pairs 0.000118528112
Disease:Bubonic_plague 5.230e-666
Disease:Dysentery 5.230e-666
Disease:Gastroenteritis 2.422e-71013
Disease:Urinary_tract_infection 0.008365834
GC_Content_Range4:0-40 3.237e-124213
GC_Content_Range4:40-60 1.537e-2471224
GC_Content_Range4:60-100 8.134e-74145
GC_Content_Range7:30-40 2.455e-84166
GC_Content_Range7:40-50 0.000011731117
GC_Content_Range7:50-60 8.065e-1340107
GC_Content_Range7:60-70 4.526e-64134
Genome_Size_Range5:2-4 3.834e-610197
Genome_Size_Range5:4-6 3.278e-2667184
Genome_Size_Range9:2-3 0.00003574120
Genome_Size_Range9:4-5 7.043e-103496
Genome_Size_Range9:5-6 2.341e-103388
Gram_Stain:Gram_Neg 1.912e-1877333
Motility:No 3.643e-92151
Motility:Yes 5.245e-1264267
Optimal_temp.:20-30 0.007274847
Optimal_temp.:28-30 0.007274847
Oxygen_Req:Aerobic 5.474e-69185
Oxygen_Req:Anaerobic 1.450e-61102
Oxygen_Req:Facultative 2.734e-2367201
Pathogenic_in:Human 0.002201840213
Pathogenic_in:No 0.000600618226
Pathogenic_in:Rodent 0.007274847
Shape:Coccus 0.0000370182
Shape:Rod 2.574e-1172347
Temp._range:Psychrophilic 0.000292669



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 74
Effective number of orgs (counting one per cluster within 468 clusters): 68

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 131
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40181


Names of the homologs of the genes in the group in each of these orgs
  G6361   G6350   EG12851   EG11412   EG11255   EG11254   EG10855   EG10607   EG10532   EG10168   
UURE95667 UU469
UPAR505682
UMET351160
TWHI218496 TW0277
TWHI203267 TW469
TVOL273116
TPEN368408
TKOD69014
TACI273075
STOK273063
SSOL273057
SMAR399550
SACI330779
RALB246199 GRAORF_4034
PTOR263820
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
OTSU357244 OTBS_2171
NPHA348780 NP1414A
MTHE349307 MTHE_1412
MTHE187420
MSTA339860
MSED399549
MPUL272635 MYPU_3350
MPNE272634
MMYC272632 MSC_0424
MMOB267748 MMOB2760
MMAZ192952
MMAR444158 MMARC6_1622
MMAR426368 MMARC7_0291
MMAR402880 MMARC5_0556
MMAR368407 MEMAR_1977
MMAR267377 MMP1037
MKAN190192
MJAN243232
MHYO295358 MHP474
MHYO262722
MHYO262719
MGEN243273
MFLO265311 MFL373
MCAP340047 MCAP_0548
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
IHOS453591
HWAL362976 HQ3705A
HSP64091 VNG6302C
HSAL478009 OE5193F
HMUK485914 HMUK_0760
HMAR272569 RRNAC2600
HBUT415426
ERUM302409 ERGA_CDS_01150
ERUM254945 ERWE_CDS_01190
ECHA205920 ECH_0178
ECAN269484 ECAJ_0120
CSUL444179
CMAQ397948
CKOR374847
CABO218497 CAB819
BXEN266265
BAPH372461 BCC_274
AYEL322098
AURANTIMONAS
APHA212042 APH_0207
APER272557
AFUL224325
ABUT367737 ABU_0402


Organism features enriched in list (features available for 70 out of the 74 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.001713059
Arrangment:Chains 0.0013985392
Arrangment:Singles 0.001217346286
Endospores:No 1.384e-1050211
GC_Content_Range4:0-40 0.002598336213
GC_Content_Range4:60-100 0.00182298145
GC_Content_Range7:0-30 8.238e-71847
GC_Content_Range7:60-70 0.00498988134
Genome_Size_Range5:0-2 1.635e-1346155
Genome_Size_Range5:4-6 2.990e-84184
Genome_Size_Range9:0-1 1.873e-81527
Genome_Size_Range9:1-2 4.671e-631128
Genome_Size_Range9:3-4 0.0070843377
Genome_Size_Range9:4-5 0.0008831396
Genome_Size_Range9:5-6 0.0000684188
Gram_Stain:Gram_Neg 0.000024024333
Gram_Stain:Gram_Pos 7.549e-82150
Habitat:Aquatic 0.00147072091
Habitat:Multiple 7.661e-84178
Habitat:Specialized 1.259e-61953
Optimal_temp.:- 0.001977320257
Optimal_temp.:100 0.001666133
Optimal_temp.:35-40 0.001666133
Optimal_temp.:85 0.000192544
Oxygen_Req:Aerobic 0.008217814185
Oxygen_Req:Anaerobic 1.090e-628102
Pathogenic_in:Human 0.000032511213
Pathogenic_in:No 0.003996637226
Pathogenic_in:Ruminant 0.001666133
Salinity:Extreme_halophilic 0.000362857
Salinity:Moderate_halophilic 0.0075030512
Shape:Irregular_coccus 4.107e-131517
Shape:Pleomorphic 0.000858458
Shape:Rod 4.436e-1215347
Shape:Sphere 2.601e-101419
Temp._range:Hyperthermophilic 1.906e-121723
Temp._range:Mesophilic 4.574e-937473
Temp._range:Thermophilic 0.00372151035



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73490.5768
AST-PWY (arginine degradation II (AST pathway))120640.5751
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50380.5448
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218810.5146
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45340.5110
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195720.4688
GLYCOCAT-PWY (glycogen degradation I)246810.4660
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37280.4611
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31250.4533
THREONINE-DEG2-PWY (threonine degradation II)214740.4525
LYXMET-PWY (L-lyxose degradation)87440.4417
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121530.4403
PWY-46 (putrescine biosynthesis III)138570.4392
SORBDEG-PWY (sorbitol degradation II)53330.4392
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176650.4359
PWY-5148 (acyl-CoA hydrolysis)227740.4295
RHAMCAT-PWY (rhamnose degradation)91440.4263
ECASYN-PWY (enterobacterial common antigen biosynthesis)191670.4257
LACTOSEUTIL-PWY (lactose degradation II)53320.4222
ARABCAT-PWY (L-arabinose degradation I)128530.4202
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91430.4130
PWY0-1356 (formate to dimethyl sulfoxide electron transfer)22190.4112
MANNIDEG-PWY (mannitol degradation I)99450.4110
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81400.4102
PWY-5918 (heme biosynthesis I)272790.4073
PWY-6196 (serine racemization)102450.4010
PWY-5921 (L-glutamine biosynthesis II (tRNA-dependent))4019-.4381



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6350   EG12851   EG11412   EG11255   EG11254   EG10855   EG10607   EG10532   EG10168   
G63610.9988520.9990760.9991990.9988850.9987150.9990850.9985190.9992740.999895
G63500.9990140.9994910.999960.9996280.9992530.9993110.9994570.998657
EG128510.9992450.9990530.9990420.9992420.9988870.9993890.999143
EG114120.9993740.9992830.9996080.9991250.9998110.999282
EG112550.9999270.999170.9993790.9994790.998817
EG112540.9991210.9992920.9991610.998755
EG108550.9990350.9996020.999197
EG106070.9986590.998662
EG105320.999397
EG10168



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PAIRWISE BLAST SCORES:

  G6361   G6350   EG12851   EG11412   EG11255   EG11254   EG10855   EG10607   EG10532   EG10168   
G63610.0f0---------
G6350-0.0f0--------
EG12851--0.0f0-------
EG11412---0.0f0------
EG11255----0.0f0-----
EG11254-----0.0f0----
EG10855------0.0f0---
EG10607-------0.0f0--
EG10532--------0.0f0-
EG10168---------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10532 EG10607 EG10855 EG11254 EG11255 EG11412 EG12851 G6350 (centered at EG11412)
EG10168 G6361 (centered at G6361)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6361   G6350   EG12851   EG11412   EG11255   EG11254   EG10855   EG10607   EG10532   EG10168   
371/623400/62373/623193/623406/623403/623101/623351/623405/623367/623
AAEO224324:0:Tyes-8--887--0-567
AAUR290340:2:Tyes0129------17-
AAVE397945:0:Tyes3282--363923182317-0-3281
ABAC204669:0:Tyes35410--13-145613182339
ABAU360910:0:Tyes01374-166313751376-234116611
ABOR393595:0:Tyes015-121617-19103
ABUT367737:0:Tyes--------0-
ACAU438753:0:Tyes----41734172--5580
ACEL351607:0:Tyes3910-----0-457
ACRY349163:8:Tyes1338----1530-63920390
ADEH290397:0:Tyes36622214--020-230325392529
AEHR187272:0:Tyes223230225228231232-0226224
AFER243159:0:Tyes22472-238210238137223802246
AHYD196024:0:Tyes07268941131
ALAI441768:0:Tyes690----0----
AMAR234826:0:Tyes----708--0--
AMAR329726:9:Tyes-------4100745
AMET293826:0:Tyes0943--9473383-22948-
ANAE240017:0:Tyes650--2----257
AORE350688:0:Tyes01063---2163-1415--
APHA212042:0:Tyes----0-----
APLE416269:0:Tyes1--5031261126050212585010
APLE434271:0:Tno1--4721257125647112544700
ASAL382245:5:Tyes10485326079
ASP1667:3:Tyes0156--154---17-
ASP232721:2:Tyes0--330713301331-3029-1
ASP62928:0:Tyes6153490-309534913492-03093616
ASP62977:0:Tyes1--25022477656-173725000
ASP76114:2:Tyes11542-178415411540-99817860
AVAR240292:3:Tyes-0-----22702625-
BABO262698:1:Tno----3130--0330
BAFZ390236:2:Fyes0766-------186
BAMB339670:3:Tno22551835-218361837-267502256
BAMB398577:3:Tno20681664-216651666-250502069
BAMY326423:0:Tyes799886--8842206-01217-
BANT260799:0:Tno-466--4641565-0871-
BANT261594:2:Tno-489--4871565-0893-
BANT568206:2:Tyes-3930--39285049-04354-
BANT592021:2:Tno-493--4911615-0915-
BAPH198804:0:Tyes03-2----1-
BAPH372461:0:Tyes--------0-
BBAC264462:0:Tyes-2391-----1108-0
BBAC360095:0:Tyes857---01---858
BBRO257310:0:Tyes1527-2040526525-320920380
BBUR224326:21:Fno0711-------176
BCAN483179:1:Tno----33---0350
BCEN331271:2:Tno19411537-215381539-235401942
BCEN331272:3:Tyes20411641-216421643-245502042
BCER226900:1:Tyes-411--4091513-0813-
BCER288681:0:Tno-406--4041501-0816-
BCER315749:1:Tyes0884--8821780-3951227-
BCER405917:1:Tyes-437--4351583-0888-
BCER572264:1:Tno-420--4181547-0837-
BCIC186490:0:Tyes-146-145---1481440
BCLA66692:0:Tyes-0--22464-7211247-
BFRA272559:1:Tyes8192741--0656-3146--
BFRA295405:0:Tno7892970--0700-3372--
BGAR290434:2:Fyes0747-------182
BHAL272558:0:Tyes-0--22700-12441973-
BHEN283166:0:Tyes61---01---60
BHER314723:0:Fyes0731-------174
BJAP224911:0:Fyes366---01--199365
BLIC279010:0:Tyes31322048--20463558-02455-
BLON206672:0:Tyes0167--103397----
BMAL243160:1:Tno621533-204715341535-0204961
BMAL320388:1:Tno2302691-0690689-236622303
BMAL320389:1:Tyes20302-223510-196822372029
BMEL224914:1:Tno----01--321797
BMEL359391:1:Tno----3231--0317
BOVI236:1:Tyes----3231--0297
BPAR257311:0:Tno01221-55612201219-2785558-
BPER257313:0:Tyes5851724-148117251726-01483-
BPET94624:0:Tyes32682692-292426932694-029223269
BPSE272560:1:Tyes488980-2769979978-02771487
BPSE320372:1:Tno5431066-321510651064-03217542
BPSE320373:1:Tno-1035-313310341033-03135522
BPUM315750:0:Tyes-873--8712253-01234-
BQUI283165:0:Tyes1--------0
BSP107806:2:Tyes03-2----1-
BSP36773:2:Tyes23281923-219241925-276902329
BSP376:0:Tyes0---360359--1401
BSUB:0:Tyes16931087--10852610-01565-
BSUI204722:1:Tyes-34--3332--0340
BSUI470137:0:Tno----34---0-
BSUI470137:1:Tno---------0
BTHA271848:1:Tno444867-1061866865-01059443
BTHE226186:0:Tyes0525--256066-2361--
BTHU281309:1:Tno-413--4111476-0811-
BTHU412694:1:Tno-368--3661381-0742-
BTRI382640:1:Tyes63---01---62
BTUR314724:0:Fyes0728-------174
BVIE269482:7:Tyes21561747-217481749-255502157
BWEI315730:4:Tyes02013--20113092-15752397-
CABO218497:0:Tyes----0-----
CACE272562:1:Tyes16811---2288-0--
CAULO:0:Tyes----34263427-151837520
CBEI290402:0:Tyes34030---4464-1056--
CBLO203907:0:Tyes7--32-4056
CBLO291272:0:Tno7--32-4056
CBOT36826:1:Tno-2343---2921-0--
CBOT441770:0:Tyes-2311---2892-0--
CBOT441771:0:Tno-1228---1811-0--
CBOT441772:1:Tno22372288---2951-0--
CBOT498213:1:Tno23122364---2955-0--
CBOT508765:1:Tyes28340---2900-1841--
CBOT515621:2:Tyes-2505---3100-0--
CBOT536232:0:Tno29873037---3656-4670-
CBUR227377:1:Tyes146-72--0913
CBUR360115:1:Tno146-72--0913
CBUR434922:2:Tno010-91213-1571
CCAV227941:1:Tyes----761----0
CCHL340177:0:Tyes----0--488-1253
CCON360104:2:Tyes653------32205
CCUR360105:0:Tyes1209------0666-
CDES477974:0:Tyes-409--407--0405-
CDIF272563:1:Tyes17291394--13922531-01391-
CDIP257309:0:Tyes484543-------0
CEFF196164:0:Fyes590662-------0
CFEL264202:1:Tyes----0----783
CFET360106:0:Tyes0------1045557552
CGLU196627:0:Tyes778846-------0
CHOM360107:1:Tyes-------8050-
CHUT269798:0:Tyes7700--142154---2614
CHYD246194:0:Tyes-320--3230-291324-
CJAP155077:0:Tyes1142319-0320321132321141
CJEI306537:0:Tyes380--1----383
CJEJ192222:0:Tyes-------19004
CJEJ195099:0:Tno-------18104
CJEJ354242:2:Tyes-------18704
CJEJ360109:0:Tyes-------0183179
CJEJ407148:0:Tno-------19404
CKLU431943:1:Tyes195110---1439-0--
CMET456442:0:Tyes0----467----
CMIC31964:2:Tyes41118--116----0
CMIC443906:2:Tyes770--2----196
CMUR243161:1:Tyes----0----665
CNOV386415:0:Tyes5401534---0----
CPEL335992:0:Tyes----0--1155133161
CPER195102:1:Tyes01700---2239-1711237-
CPER195103:0:Tno01909---2397-1920214-
CPER289380:3:Tyes01638---2099-1379209-
CPHY357809:0:Tyes20831617---0---990
CPNE115711:1:Tyes----845----0
CPNE115713:0:Tno----276----0
CPNE138677:0:Tno----275----0
CPNE182082:0:Tno----283----0
CPRO264201:0:Fyes672---858----0
CPSY167879:0:Tyes1792496327081793
CRUT413404:0:Tyes907306-125305--4380-
CSAL290398:0:Tyes8100-81812-4816811
CSP501479:6:Fyes----209210-0--
CSP501479:7:Fyes--------0-
CSP501479:8:Fyes1--------0
CSP78:2:Tyes----47324733-147250430
CTEP194439:0:Tyes-0--124--273-1462
CTET212717:0:Tyes-1740---0-1751--
CTRA471472:0:Tyes----0----663
CTRA471473:0:Tno----0----663
CVES412965:0:Tyes836290-126---4090-
CVIO243365:0:Tyes375014-21312-396803751
DARO159087:0:Tyes344957-4395859-04413450
DDES207559:0:Tyes831650--7771323-01476830
DETH243164:0:Tyes-0------184-
DGEO319795:1:Tyes712----1067--0545
DHAF138119:0:Tyes01060--10582920-10711057-
DNOD246195:0:Tyes670--0217669-69423
DOLE96561:0:Tyes-0--1--51323761696
DPSY177439:2:Tyes7531549--15791164-01561752
DRAD243230:3:Tyes1530----0--1528728
DRED349161:0:Tyes-4--1787-290-
DSHI398580:2:Tyes---------0
DSHI398580:5:Tyes1580---3132-5450-
DSP216389:0:Tyes12550------158-
DSP255470:0:Tno11860------169-
DVUL882:1:Tyes-1165--831467-04091071
ECAN269484:0:Tyes---------0
ECAR218491:0:Tyes144853260713
ECHA205920:0:Tyes---------0
ECOL199310:0:Tno185963270817
ECOL316407:0:Tno245963270823
ECOL331111:6:Tno275963270826
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