CANDIDATE ID: 152

CANDIDATE ID: 152

NUMBER OF GENES: 10
AVERAGE SCORE:    9.9916484e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7028 (flhB) (b1880)
   Products of gene:
     - G7028-MONOMER (flagellar biosynthesis protein FlhB)
     - CPLX0-7451 (Flagellar Export Apparatus)
     - CPLX0-7452 (Flagellum)

- EG10602 (motB) (b1889)
   Products of gene:
     - MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall)
     - FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex)
     - CPLX0-7452 (Flagellum)

- EG10601 (motA) (b1890)
   Products of gene:
     - MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotA protein, proton conductor component of motor; no effect on switching)
     - FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex)
     - CPLX0-7452 (Flagellum)

- EG10320 (flhD) (b1892)
   Products of gene:
     - EG10320-MONOMER (FlhD)
     - CPLX0-3930 (FlhDC transcriptional dual regulator)
       Regulatees:
        TU-8405 (flhBAE)
        TU-8399 (yecR)
        TU00273 (flgBCDEFGHIJ)
        TU00272 (flgAMN)
        TU-8412 (gltIJKL-sroC)
        TU-8411 (fliFGHIJK)
        TU-8408 (fliE)
        TU00274 (fliDST)
        TU0-1549 (yhjH)
        TU0-1548 (ycgR)
        TU00199 (nrfABCDEFG)
        TU00108 (mdh)
        TU00168 (mglBAC)
        TU00415 (fliAZY)
        TU363 (napFDAGHBC-ccmABCDEFGH)
        TU424 (hydN-hypF)
        TU00305 (napFDAGHBC-ccmABCDEFGH)
        TU00276 (fliLMNOPQR)
        TU00030 (glpABC)
        TU0-13745 (ppdAB-ygdB-ppdC-recC)
        TU0-14275 (ygbK)

- EG10319 (flhC) (b1891)
   Products of gene:
     - MONOMER0-2488 (FlhC)
     - CPLX0-3930 (FlhDC transcriptional dual regulator)
       Regulatees:
        TU-8405 (flhBAE)
        TU-8399 (yecR)
        TU00273 (flgBCDEFGHIJ)
        TU00272 (flgAMN)
        TU-8412 (gltIJKL-sroC)
        TU-8411 (fliFGHIJK)
        TU-8408 (fliE)
        TU00274 (fliDST)
        TU0-1549 (yhjH)
        TU0-1548 (ycgR)
        TU00199 (nrfABCDEFG)
        TU00108 (mdh)
        TU00168 (mglBAC)
        TU00415 (fliAZY)
        TU363 (napFDAGHBC-ccmABCDEFGH)
        TU424 (hydN-hypF)
        TU00305 (napFDAGHBC-ccmABCDEFGH)
        TU00276 (fliLMNOPQR)
        TU00030 (glpABC)
        TU0-13745 (ppdAB-ygdB-ppdC-recC)
        TU0-14275 (ygbK)

- EG10151 (cheZ) (b1881)
   Products of gene:
     - CHEZ-MONOMER (CheZ)
     - CHEZ-CPLX (CheZ)

- EG10150 (cheY) (b1882)
   Products of gene:
     - CHEY-MONOMER (chemotaxis regulator transmitting signal to flagellar motor component)
     - MONOMER0-4170 (CheY-acetylated)
     - PHOSPHO-CHEY (CheY-Pasp)

- EG10149 (cheW) (b1887)
   Products of gene:
     - TSR-GLN (Tsrgln)
     - TSR-GLU (Tsrglu)
     - TSR-GLUME (Tsrglu-Me)
     - TAP-GLN (Tapgln)
     - TAP-GLU (Tapglu)
     - TAP-GLUME (Tapglu-Me)
     - TRG-GLN (Trggln)
     - TRG-GLU (Trgglu)
     - TRG-GLUME (Trgglu-Me)
     - TAR-GLN (Targln)
     - TAR-GLU (Targlu)
     - TAR-GLUME (Targlu-Me)
       Regulatees:
     - CHEW-MONOMER (CheW)
     - TAR-CPLX (MCP-II)
     - TRG-CPLX (MCP-III)
     - TAP-CPLX (MCP-IV)
     - TSR-CPLX (MCP-I)

- EG10147 (cheB) (b1883)
   Products of gene:
     - CHEB-MONOMER (CheB)
     - PHOSPHO-CHEB (CheB-Pasp)
       Reactions:
        Tapglu-Me + H2O  ->  methanol + Tapglu
        Targlu-Me + H2O  ->  methanol + Targlu
        Trgglu-Me + H2O  ->  methanol + Trgglu
        Tsrglu-Me + H2O  ->  methanol + Tsrglu
        Tsrgln + H2O  ->  ammonia + Tsrglu
        Trggln + H2O  ->  ammonia + Trgglu
        Targln + H2O  ->  ammonia + Targlu
        Tapgln + H2O  ->  ammonia + Tapglu
        a protein-L-glutamine + H2O  ->  ammonia + a protein L-glutamate
        a protein-L-glutamate--O5-methyl-ester + H2O  ->  a protein L-glutamate + methanol

- EG10146 (cheA) (b1888)
   Products of gene:
     - CHEA-SMALL (CheA(S))
     - TSR-GLN (Tsrgln)
     - TSR-GLU (Tsrglu)
     - TSR-GLUME (Tsrglu-Me)
     - TRG-GLN (Trggln)
     - TRG-GLU (Trgglu)
     - TRG-GLUME (Trgglu-Me)
     - TAP-GLN (Tapgln)
     - TAP-GLU (Tapglu)
     - TAP-GLUME (Tapglu-Me)
     - TAR-GLN (Targln)
     - TAR-GLU (Targlu)
     - TAR-GLUME (Targlu-Me)
       Regulatees:
     - PROTEIN-CHEAP (CheA-Phis)
     - PROTEIN-CHEA (CheA(L) monomer)
     - CHEA-CPLX (CheA(L))
     - TAR-CPLX (MCP-II)
     - TAP-CPLX (MCP-IV)
     - TRG-CPLX (MCP-III)
     - TSR-CPLX (MCP-I)



Back to top


ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 79
Effective number of orgs (counting one per cluster within 468 clusters): 39

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175810
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329539
YPES386656 ncbi Yersinia pestis Pestoides F10
YPES377628 ncbi Yersinia pestis Nepal51610
YPES360102 ncbi Yersinia pestis Antiqua10
YPES349746 ncbi Yersinia pestis Angola10
YPES214092 ncbi Yersinia pestis CO929
YPES187410 ncbi Yersinia pestis KIM 109
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808110
VEIS391735 ncbi Verminephrobacter eiseniae EF01-210
TDEN292415 ncbi Thiobacillus denitrificans ATCC 2525910
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT210
SSON300269 ncbi Shigella sonnei Ss04610
SPRO399741 ncbi Serratia proteamaculans 56810
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47610
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915010
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1810
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty210
RSOL267608 ncbi Ralstonia solanacearum GMI100010
RMET266264 ncbi Ralstonia metallidurans CH3410
RFER338969 ncbi Rhodoferax ferrireducens T11810
REUT381666 ncbi Ralstonia eutropha H1610
REUT264198 ncbi Ralstonia eutropha JMP13410
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO110
NEUT335283 ncbi Nitrosomonas eutropha C9110
NEUR228410 ncbi Nitrosomonas europaea ATCC 1971810
MPET420662 ncbi Methylibium petroleiphilum PM110
MFLA265072 ncbi Methylobacillus flagellatus KT10
LCHO395495 ncbi Leptothrix cholodnii SP-610
JSP375286 ncbi Janthinobacterium sp. Marseille10
HARS204773 ncbi Herminiimonas arsenicoxydans10
ESP42895 Enterobacter sp.10
EFER585054 ncbi Escherichia fergusonii ATCC 3546910
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H710
ECOL585397 ncbi Escherichia coli ED1a10
ECOL585057 ncbi Escherichia coli IAI399
ECOL585056 ncbi Escherichia coli UMN02610
ECOL585055 ncbi Escherichia coli 5598910
ECOL585035 ncbi Escherichia coli S8810
ECOL585034 ncbi Escherichia coli IAI110
ECOL481805 ncbi Escherichia coli ATCC 873910
ECOL469008 ncbi Escherichia coli BL21(DE3)10
ECOL439855 ncbi Escherichia coli SMS-3-510
ECOL413997 ncbi Escherichia coli B str. REL60610
ECOL409438 ncbi Escherichia coli SE1110
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8910
ECOL362663 ncbi Escherichia coli 53610
ECOL331111 ncbi Escherichia coli E24377A10
ECOL316407 ncbi Escherichia coli K-12 substr. W311010
ECOL199310 ncbi Escherichia coli CFT07310
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104310
CSAL290398 ncbi Chromohalobacter salexigens DSM 304310
BVIE269482 ncbi Burkholderia vietnamiensis G410
BTHA271848 ncbi Burkholderia thailandensis E26410
BSP36773 Burkholderia sp.10
BPSE320373 ncbi Burkholderia pseudomallei 66810
BPSE320372 ncbi Burkholderia pseudomallei 1710b10
BPSE272560 ncbi Burkholderia pseudomallei K9624310
BPET94624 Bordetella petrii10
BPER257313 ncbi Bordetella pertussis Tohama I10
BPAR257311 ncbi Bordetella parapertussis 1282210
BMAL320389 ncbi Burkholderia mallei NCTC 1024710
BMAL320388 ncbi Burkholderia mallei SAVP110
BMAL243160 ncbi Burkholderia mallei ATCC 233449
BCEN331272 ncbi Burkholderia cenocepacia HI242410
BCEN331271 ncbi Burkholderia cenocepacia AU 105410
BBRO257310 ncbi Bordetella bronchiseptica RB5010
BAMB398577 ncbi Burkholderia ambifaria MC40-610
BAMB339670 ncbi Burkholderia ambifaria AMMD10
ASP62928 ncbi Azoarcus sp. BH7210
ASP232721 ncbi Acidovorax sp. JS4210
ABAU360910 ncbi Bordetella avium 197N10
AAVE397945 ncbi Acidovorax citrulli AAC00-110


Names of the homologs of the genes in the group in each of these orgs
  G7028   EG10602   EG10601   EG10320   EG10319   EG10151   EG10150   EG10149   EG10147   EG10146   
YPSE349747 YPSIP31758_2334YPSIP31758_1637YPSIP31758_1636YPSIP31758_1634YPSIP31758_1635YPSIP31758_1647YPSIP31758_1646YPSIP31758_1639YPSIP31758_1645YPSIP31758_1638
YPSE273123 YPTB1665YPTB2406YPTB2407YPTB2409YPTB2396YPTB2397YPTB2404YPTB2398YPTB2405
YPES386656 YPDSF_1334YPDSF_1782YPDSF_1783YPDSF_1785YPDSF_1784YPDSF_1767YPDSF_1768YPDSF_1780YPDSF_1769YPDSF_1781
YPES377628 YPN_2334YPN_1965YPN_1966YPN_1968YPN_1967YPN_1950YPN_1951YPN_1963YPN_1952YPN_1964
YPES360102 YPA_1164YPA_1856YPA_1857YPA_1859YPA_1858YPA_1841YPA_1842YPA_1854YPA_1843YPA_1855
YPES349746 YPANGOLA_A0242YPANGOLA_A2826YPANGOLA_A2827YPANGOLA_A2829YPANGOLA_A2828YPANGOLA_A3521YPANGOLA_A3520YPANGOLA_A2824YPANGOLA_A3519YPANGOLA_A2825
YPES214092 YPO1790YPO1665YPO1664YPO1663YPO1681YPO1680YPO1667YPO1679YPO1666
YPES187410 Y2519Y1826Y1823Y1822Y1843Y1842Y1828Y1841Y1827
YENT393305 YE2567YE2578YE2579YE2581YE2580YE2569YE2570YE2576YE2571YE2577
VEIS391735 VEIS_0932VEIS_4422VEIS_4421VEIS_1860VEIS_1859VEIS_4424VEIS_4423VEIS_2175VEIS_2172VEIS_2176
TDEN292415 TBD_1245TBD_1244TBD_1243TBD_1240TBD_1241TBD_1613TBD_1614TBD_1623TBD_1615TBD_1624
STYP99287 STM1914STM1922STM1923STM1925STM1924STM1915STM1916STM1920STM1917STM1921
SSON300269 SSO_1240SSO_1228SSO_1227SSO_1225SSO_1226SSO_1236SSO_1235SSO_1230SSO_1234SSO_1229
SPRO399741 SPRO_2977SPRO_2986SPRO_2987SPRO_2989SPRO_2988SPRO_2978SPRO_2979SPRO_2984SPRO_2980SPRO_2985
SHIGELLA FLHBMOTBMOTAFLHCCHEZCHEYCHEWCHEBCHEA
SFLE373384 SFV_1921SFV_1935SFV_1936SFV_1937SFV_1927SFV_1928SFV_1933SFV_1929SFV_1934
SFLE198214 AAN43477.1AAN43491.1AAN43492.1AAN43493.1AAN43483.1AAN43484.1AAN43489.1AAN43485.1AAN43490.1
SENT454169 SEHA_C2129SEHA_C2138SEHA_C2139SEHA_C2141SEHA_C2140SEHA_C2130SEHA_C2131SEHA_C2136SEHA_C2132SEHA_C2137
SENT321314 SCH_1921SCH_1929SCH_1930SCH_1932SCH_1931SCH_1922SCH_1923SCH_1927SCH_1924SCH_1928
SENT295319 SPA0954SPA0946SPA0945SPA0943SPA0944SPA0953SPA0952SPA0948SPA0951SPA0947
SENT220341 STY2123STY2131STY2132STY2134STY2133STY2124STY2125STY2129STY2126STY2130
SENT209261 T0963T0955T0954T0952T0953T0962T0961T0957T0960T0956
RSOL267608 RSP1394RSP1410RSP1411RSP1413RSP1412RSC0742RSP1402RSP1407RSP1403RSP1408
RMET266264 RMET_3698RMET_3688RMET_3687RMET_3685RMET_3686RMET_3695RMET_3694RMET_3690RMET_3693RMET_3689
RFER338969 RFER_3706RFER_3703RFER_3702RFER_3700RFER_3701RFER_3705RFER_3704RFER_0924RFER_0571RFER_0567
REUT381666 H16_B0252H16_B0238H16_B0237H16_B0235H16_B0236H16_B0245H16_B0244H16_B0240H16_B0243H16_B0239
REUT264198 REUT_B5615REUT_B5607REUT_B5606REUT_B5604REUT_B5605REUT_B5614REUT_B5613REUT_B5609REUT_B5612REUT_B5608
PLUM243265 PLU1895PLU1850PLU1849PLU1847PLU1848PLU1858PLU1857PLU1852PLU1856PLU1851
NEUT335283 NEUT_2443NEUT_0189NEUT_0188NEUT_0729NEUT_0730NEUT_1275NEUT_1276NEUT_1168NEUT_1173NEUT_1167
NEUR228410 NE2487NE0045NE0046NE2407NE2406NE1924NE1923NE1865NE1859NE1866
MPET420662 MPE_A3077MPE_A2873MPE_A2872MPE_A2869MPE_A2870MPE_A2875MPE_A2874MPE_A0587MPE_A2702MPE_A0585
MFLA265072 MFLA_1944MFLA_1939MFLA_1940MFLA_1943MFLA_1942MFLA_1928MFLA_1929MFLA_1935MFLA_1930MFLA_1936
LCHO395495 LCHO_1618LCHO_1000LCHO_1001LCHO_1005LCHO_1004LCHO_0998LCHO_0999LCHO_1524LCHO_0702LCHO_1599
JSP375286 MMA_2087MMA_2098MMA_2099MMA_2102MMA_2101MMA_1086MMA_2090MMA_2094MMA_2091MMA_2095
HARS204773 HEAR1310HEAR1298HEAR1297HEAR1294HEAR1295HEAR0953HEAR1307HEAR1302HEAR1305HEAR1301
ESP42895 ENT638_2447ENT638_2467ENT638_2468ENT638_2470ENT638_2469ENT638_2452ENT638_2453ENT638_2465ENT638_2454ENT638_2466
EFER585054 EFER_1194EFER_1132EFER_1131EFER_1129EFER_1130EFER_1145EFER_1144EFER_1134EFER_1143EFER_1133
ECOO157 FLHBMOTBMOTAFLHDFLHCCHEZCHEYCHEWCHEBCHEA
ECOL83334 ECS2590ECS2599ECS2600ECS2602ECS2601ECS2591ECS2592ECS2597ECS2593ECS2598
ECOL585397 ECED1_2148ECED1_2157ECED1_2158ECED1_2160ECED1_2159ECED1_2149ECED1_2150ECED1_2155ECED1_2151ECED1_2156
ECOL585057 ECIAI39_1170ECIAI39_1162ECIAI39_1161ECIAI39_1158ECIAI39_1169ECIAI39_1168ECIAI39_1164ECIAI39_1167ECIAI39_1163
ECOL585056 ECUMN_2177ECUMN_2186ECUMN_2187ECUMN_2189ECUMN_2188ECUMN_2178ECUMN_2179ECUMN_2184ECUMN_2180ECUMN_2185
ECOL585055 EC55989_2059EC55989_2068EC55989_2069EC55989_2071EC55989_2070EC55989_2060EC55989_2061EC55989_2066EC55989_2062EC55989_2067
ECOL585035 ECS88_1938ECS88_1946ECS88_1947ECS88_1949ECS88_1948ECS88_1939ECS88_1940ECS88_1944ECS88_1941ECS88_1945
ECOL585034 ECIAI1_1967ECIAI1_1976ECIAI1_1977ECIAI1_1979ECIAI1_1978ECIAI1_1968ECIAI1_1969ECIAI1_1974ECIAI1_1970ECIAI1_1975
ECOL481805 ECOLC_1752ECOLC_1743ECOLC_1742ECOLC_1740ECOLC_1741ECOLC_1751ECOLC_1750ECOLC_1745ECOLC_1749ECOLC_1744
ECOL469008 ECBD_1758ECBD_1749ECBD_1748ECBD_1746ECBD_1747ECBD_1757ECBD_1756ECBD_1751ECBD_1755ECBD_1750
ECOL439855 ECSMS35_1307ECSMS35_1295ECSMS35_1294ECSMS35_1292ECSMS35_1293ECSMS35_1303ECSMS35_1302ECSMS35_1297ECSMS35_1301ECSMS35_1296
ECOL413997 ECB_01851ECB_01860ECB_01861ECB_01863ECB_01862ECB_01852ECB_01853ECB_01858ECB_01854ECB_01859
ECOL409438 ECSE_2115ECSE_2124ECSE_2125ECSE_2127ECSE_2126ECSE_2116ECSE_2117ECSE_2122ECSE_2118ECSE_2123
ECOL405955 APECO1_929APECO1_937APECO1_938APECO1_940APECO1_939APECO1_930APECO1_931APECO1_935APECO1_932APECO1_936
ECOL364106 UTI89_C2083UTI89_C2092UTI89_C2093UTI89_C2095UTI89_C2094UTI89_C2085UTI89_C2086UTI89_C2090UTI89_C2087UTI89_C2091
ECOL362663 ECP_1825ECP_1833ECP_1834ECP_1836ECP_1835ECP_1826ECP_1827ECP_1831ECP_1828ECP_1832
ECOL331111 ECE24377A_2112ECE24377A_2122ECE24377A_2123ECE24377A_2125ECE24377A_2124ECE24377A_2114ECE24377A_2115ECE24377A_2120ECE24377A_2116ECE24377A_2121
ECOL316407 ECK1881:JW1869:B1880ECK1890:JW1878:B1889ECK1891:JW1879:B1890ECK1893:JW1881:B1892ECK1892:JW1880:B1891ECK1882:JW1870:B1881ECK1883:JW1871:B1882ECK1888:JW1876:B1887ECK1884:JW1872:B1883ECK1889:JW1877:B1888
ECOL199310 C2294C2304C2305C2308C2306C2296C2297C2302C2298C2303
ECAR218491 ECA1696ECA1688ECA1687ECA1685ECA1686ECA1695ECA1694ECA1690ECA1693ECA1689
CSAL290398 CSAL_2016CSAL_2025CSAL_2026CSAL_2028CSAL_2027CSAL_2017CSAL_2018CSAL_2023CSAL_2020CSAL_2024
BVIE269482 BCEP1808_0227BCEP1808_0213BCEP1808_0212BCEP1808_0210BCEP1808_0211BCEP1808_0222BCEP1808_0221BCEP1808_0216BCEP1808_0220BCEP1808_0215
BTHA271848 BTH_I3170BTH_I3184BTH_I3185BTH_I3187BTH_I3186BTH_I3175BTH_I3176BTH_I3181BTH_I3177BTH_II0156
BSP36773 BCEP18194_A3370BCEP18194_A3356BCEP18194_A3355BCEP18194_A3353BCEP18194_A3354BCEP18194_A3365BCEP18194_A3364BCEP18194_A3359BCEP18194_A3363BCEP18194_A3358
BPSE320373 BURPS668_3844BURPS668_3857BURPS668_3858BURPS668_3860BURPS668_3859BURPS668_3848BURPS668_3849BURPS668_3854BURPS668_3850BURPS668_A0204
BPSE320372 BURPS1710B_A0070BURPS1710B_A0084BURPS1710B_A0085BURPS1710B_A0087BURPS1710B_A0086BURPS1710B_A0075BURPS1710B_A0076BURPS1710B_A0081BURPS1710B_A0077BURPS1710B_A0082
BPSE272560 BPSL3295BPSL3308BPSL3309BPSL3311BPSL3310BPSL3299BPSL3300BPSL3305BPSL3301BPSL3306
BPET94624 BPET2110BPET2100BPET2099BPET2097BPET2098BPET2108BPET2107BPET2103BPET2106BPET2102
BPER257313 BP1366BP1025BP1024BP1022BP1023BP1034BP1033BP1029BP1032BP1028
BPAR257311 BPP1479BPP1470BPP1469BPP1467BPP1468BPP1478BPP1477BPP1473BPP1476BPP1472
BMAL320389 BMA10247_3128BMA10247_3114BMA10247_3113BMA10247_3111BMA10247_3112BMA10247_3124BMA10247_3123BMA10247_3117BMA10247_3122BMA10247_3116
BMAL320388 BMASAVP1_A3423BMASAVP1_A3437BMASAVP1_A3438BMASAVP1_A3440BMASAVP1_A3439BMASAVP1_A3427BMASAVP1_A3428BMASAVP1_A3434BMASAVP1_A3429BMASAVP1_A3435
BMAL243160 BMA_2847BMA_2862BMA_2864BMA_2863BMA_2851BMA_2852BMA_2858BMA_2854BMA_2859
BCEN331272 BCEN2424_0267BCEN2424_0254BCEN2424_0253BCEN2424_0251BCEN2424_0252BCEN2424_0263BCEN2424_0262BCEN2424_0257BCEN2424_0261BCEN2424_0256
BCEN331271 BCEN_2840BCEN_2853BCEN_2854BCEN_2856BCEN_2855BCEN_2844BCEN_2845BCEN_2850BCEN_2846BCEN_2851
BBRO257310 BB2553BB2544BB2543BB2541BB2542BB2552BB2551BB2547BB2550BB2546
BAMB398577 BAMMC406_0194BAMMC406_0180BAMMC406_0179BAMMC406_0177BAMMC406_0178BAMMC406_0189BAMMC406_0188BAMMC406_0183BAMMC406_0187BAMMC406_0182
BAMB339670 BAMB_0181BAMB_0167BAMB_0166BAMB_0164BAMB_0165BAMB_0176BAMB_0175BAMB_0170BAMB_0174BAMB_0169
ASP62928 AZO1103AZO1449AZO1448AZO1446AZO1447AZO1461AZO1460AZO1452AZO1456AZO1451
ASP232721 AJS_3819AJS_3816AJS_3815AJS_2884AJS_2885AJS_3818AJS_3817AJS_3789AJS_3786AJS_3790
ABAU360910 BAV1682BAV1673BAV1672BAV1670BAV1671BAV1681BAV1680BAV1676BAV1679BAV1675
AAVE397945 AAVE_4412AAVE_4409AAVE_4408AAVE_2006AAVE_2005AAVE_4411AAVE_4410AAVE_4377AAVE_4374AAVE_4378


Organism features enriched in list (features available for 75 out of the 79 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000809925112
Disease:Bubonic_plague 3.789e-666
Disease:Dysentery 0.002945246
Disease:Gastroenteritis 0.0003646713
Disease:Glanders_and_pneumonia 0.002055233
Disease:Melioidosis 0.002055233
Disease:Urinary_tract_infection 0.007200234
Endospores:No 0.001426016211
GC_Content_Range4:40-60 3.242e-647224
GC_Content_Range4:60-100 0.003786528145
GC_Content_Range7:50-60 7.563e-1035107
GC_Content_Range7:60-70 0.001112028134
Genome_Size_Range5:2-4 1.619e-77197
Genome_Size_Range5:4-6 1.531e-1656184
Genome_Size_Range5:6-10 0.00693841247
Genome_Size_Range9:2-3 0.00008184120
Genome_Size_Range9:3-4 0.0039972377
Genome_Size_Range9:4-5 3.601e-93296
Genome_Size_Range9:5-6 0.00003792488
Genome_Size_Range9:6-8 0.00366731138
Gram_Stain:Gram_Neg 1.010e-1067333
Habitat:Aquatic 0.0028254491
Motility:No 9.826e-74151
Motility:Yes 6.548e-652267
Optimal_temp.:28-30 0.006026447
Oxygen_Req:Aerobic 0.006396215185
Oxygen_Req:Anaerobic 3.351e-61102
Oxygen_Req:Facultative 3.794e-949201
Pathogenic_in:Animal 0.00332741666
Pathogenic_in:Human 0.000641340213
Pathogenic_in:No 9.385e-711226
Pathogenic_in:Rodent 0.006026447
Shape:Coccus 0.0000705182
Shape:Rod 1.956e-1068347
Temp._range:Mesophilic 0.000062172473



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 292
Effective number of orgs (counting one per cluster within 468 clusters): 223

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TPEN368408 ncbi Thermofilum pendens Hrk 50
TFUS269800 ncbi Thermobifida fusca YX0
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6661
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR368407 ncbi Methanoculleus marisnigri JR11
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath1
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785780
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/31
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BQUI283165 ncbi Bartonella quintana Toulouse0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHEN283166 ncbi Bartonella henselae Houston-10
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP1667 Arthrobacter sp.0
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7028   EG10602   EG10601   EG10320   EG10319   EG10151   EG10150   EG10149   EG10147   EG10146   
XFAS405440
XFAS183190
XFAS160492
XAUT78245
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TPEN368408
TFUS269800
TELO197221 TLL2438
TACI273075
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP321332 CYB_1934
SSP321327
SSP1148
SSP1131
SSOL273057
SSAP342451
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SERY405948
SEPI176280
SEPI176279
SELO269084
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117
RTYP257363
RSP101510
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199 GRAORF_2733
RAKA293614
PTOR263820
PSP56811
PSP312153
PSP296591 BPRO_2467
PSP117 RB1347
PRUM264731
PPEN278197
PNAP365044
PMUL272843
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747
OTSU357244
NSP103690
NSEN222891
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NFAR247156
NARO279238
MVAN350058 MVAN_1931
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSUC221988
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR368407 MEMAR_0944
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MCAP243233 MCA_0832
MBOV410289
MBOV233413
MAVI243243
MART243272
MAER449447
MAEO419665
MABS561007
LXYL281090
LSAK314315
LREU557436
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LACI272621
KPNE272620
IHOS453591
HWAL362976
HSOM228400
HSOM205914
HINF71421
HINF374930
HINF281310
HDUC233412
HBUT415426
HAUR316274 HAUR_0727
GVIO251221
GFOR411154
GBET391165 GBCGDNIH1_0915
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FMAG334413
FJOH376686 FJOH_2921
FALN326424
ERUM302409
ERUM254945
EFAE226185
ECHA205920
ECAN269484
DSP255470
DSP216389
DRAD243230
DNOD246195
DGEO319795
DETH243164
CVES412965
CTRA471473 CTLON_0342
CTRA471472 CTL0346
CTEP194439
CSUL444179
CRUT413404
CPRO264201 PC0750
CPNE182082 CPB0332
CPNE138677 CPJ0322
CPNE115713 CPN0322
CPNE115711 CP_0435
CPER289380
CPER195103
CPER195102
CPEL335992
CMUR243161 TC_0366
CMIC443906
CMIC31964
CMAQ397948
CKOR374847
CJEI306537
CHUT269798 CHU_2629
CHOM360107
CGLU196627
CFEL264202 CF0547
CEFF196164
CDIP257309
CCHL340177
CCAV227941 CCA_00460
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CABO218497 CAB446
BTRI382640
BTHE226186
BSP107806 BU240
BQUI283165
BLON206672
BHEN283166
BFRA295405
BFRA272559
BCIC186490
BAPH372461 BCC_150
BAPH198804 BUSG235
AYEL322098
AVAR240292
AURANTIMONAS
ASP62977
ASP1667
APLE434271
APLE416269
APHA212042
APER272557
ANAE240017
AMAR329726 AM1_5096
AMAR234826
ALAI441768
AFER243159
ABOR393595
AAUR290340


Organism features enriched in list (features available for 272 out of the 292 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00003691617
Arrangment:Singles 0.0010049116286
Disease:Pharyngitis 0.002123488
Disease:Pneumonia 0.00867211012
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00020421111
Disease:Wide_range_of_infections 0.00020421111
Disease:bronchitis_and_pneumonitis 0.002123488
Disease:gastroenteritis 0.0029727113
Endospores:No 8.571e-6123211
Endospores:Yes 8.079e-61053
GC_Content_Range4:0-40 1.365e-10136213
GC_Content_Range4:40-60 0.003176090224
GC_Content_Range4:60-100 5.127e-645145
GC_Content_Range7:0-30 0.00600623047
GC_Content_Range7:30-40 7.295e-8106166
GC_Content_Range7:50-60 0.000106733107
GC_Content_Range7:60-70 6.079e-836134
Genome_Size_Range5:0-2 3.949e-23124155
Genome_Size_Range5:2-4 0.0021204107197
Genome_Size_Range5:4-6 9.877e-2926184
Genome_Size_Range9:0-1 3.224e-62427
Genome_Size_Range9:1-2 1.965e-16100128
Genome_Size_Range9:2-3 1.522e-883120
Genome_Size_Range9:3-4 0.00129672477
Genome_Size_Range9:4-5 1.408e-161096
Genome_Size_Range9:5-6 1.396e-91688
Genome_Size_Range9:6-8 0.00437161038
Gram_Stain:Gram_Neg 1.932e-12114333
Gram_Stain:Gram_Pos 1.871e-10103150
Habitat:Host-associated 5.416e-9129206
Habitat:Multiple 0.000353465178
Habitat:Terrestrial 0.0002233531
Motility:No 1.382e-33132151
Motility:Yes 3.994e-6130267
Optimal_temp.:- 0.0065234107257
Optimal_temp.:30-35 0.004615377
Optimal_temp.:30-37 0.00116601518
Optimal_temp.:37 0.000650964106
Oxygen_Req:Microaerophilic 0.0001609118
Pathogenic_in:Human 0.0043890113213
Salinity:Non-halophilic 0.003972361106
Shape:Coccus 4.591e-197482
Shape:Rod 7.475e-12122347
Shape:Sphere 0.00009211719



Back to top


ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 6
Effective number of orgs (counting one per cluster within 468 clusters): 5

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
BAFZ390236 ncbi Borrelia afzelii PKo 0.00093682296
BBUR224326 ncbi Borrelia burgdorferi B31 0.00101172326
NEUR228410 ncbi Nitrosomonas europaea ATCC 19718 0.0012904130310
NEUT335283 ncbi Nitrosomonas eutropha C91 0.0013513130910
MFLA265072 ncbi Methylobacillus flagellatus KT 0.0053701150210
TDEN292415 ncbi Thiobacillus denitrificans ATCC 25259 0.0055152150610


Names of the homologs of the genes in the group in each of these orgs
  G7028   EG10602   EG10601   EG10320   EG10319   EG10151   EG10150   EG10149   EG10147   EG10146   
BAFZ390236 BAPKO_0282BAPKO_0291BAPKO_0600BAPKO_0595BAPKO_0598BAPKO_0713
BBUR224326 BB_0272BB_0281BB_0570BB_0565BB_0568BB_0669
NEUR228410 NE2487NE0045NE0046NE2407NE2406NE1924NE1923NE1865NE1859NE1866
NEUT335283 NEUT_2443NEUT_0189NEUT_0188NEUT_0729NEUT_0730NEUT_1275NEUT_1276NEUT_1168NEUT_1173NEUT_1167
MFLA265072 MFLA_1944MFLA_1939MFLA_1940MFLA_1943MFLA_1942MFLA_1928MFLA_1929MFLA_1935MFLA_1930MFLA_1936
TDEN292415 TBD_1245TBD_1244TBD_1243TBD_1240TBD_1241TBD_1613TBD_1614TBD_1623TBD_1615TBD_1624


Organism features enriched in list (features available for 6 out of the 6 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Motility:Yes 0.00894746267



Back to top


ORGANISMS DEPLETED FOR GROUP:

Total number of orgs: 1
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 78578 0.000213134000


Organism features enriched in list (features available for 1 out of the 1 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Pneumonia_and_urinary_tract_infections 0.001715311



Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73530.6561
GLUCARDEG-PWY (D-glucarate degradation I)152690.5585
PWY0-981 (taurine degradation IV)106530.5078
PWY0-1182 (trehalose degradation II (trehalase))70420.5059
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135600.5021
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218770.4992
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45320.4900
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176680.4895
ECASYN-PWY (enterobacterial common antigen biosynthesis)191710.4894
GALACTARDEG-PWY (D-galactarate degradation I)151620.4824
AST-PWY (arginine degradation II (AST pathway))120540.4744
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195700.4709
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149590.4535
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112500.4497
PWY-6089 (3-chlorocatechol degradation I (ortho))102470.4441
PWY-6196 (serine racemization)102470.4441
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50310.4378
GLYCOCAT-PWY (glycogen degradation I)246750.4323
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156580.4255
GALACTCAT-PWY (D-galactonate degradation)104460.4244
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31230.4230
PWY0-901 (selenocysteine biosynthesis I (bacteria))230710.4182
PHESYN (phenylalanine biosynthesis I)110470.4181
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91420.4160
PYRUVOX-PWY (pyruvate oxidation pathway)70360.4143
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81390.4120
P2-PWY (2'-(5'-phosphoribosyl)-3'-dephospho-CoA biosynthesis I (citrate lyase))89410.4096
PWY-3162 (tryptophan degradation V (side chain pathway))94420.4054
P601-PWY (D-camphor degradation)95420.4019
KETOGLUCONMET-PWY (ketogluconate metabolism)103440.4018



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10602   EG10601   EG10320   EG10319   EG10151   EG10150   EG10149   EG10147   EG10146   
G70280.9991140.9993950.9986550.9987190.9995170.9995260.9992890.9992950.999424
EG106020.9999140.999150.9992480.9985790.9985070.9988630.9985840.998981
EG106010.9992610.9993670.9988840.9988360.9990740.998860.999131
EG103200.9995090.9987550.9987840.9989180.9988090.99893
EG103190.9988350.9988580.999010.9988890.999025
EG101510.9997570.9992830.9993770.999306
EG101500.999480.999620.999499
EG101490.9998180.999894
EG101470.999889
EG10146



Back to top


PAIRWISE BLAST SCORES:

  G7028   EG10602   EG10601   EG10320   EG10319   EG10151   EG10150   EG10149   EG10147   EG10146   
G70280.0f0---------
EG10602-0.0f0--------
EG10601--0.0f0-------
EG10320---0.0f0------
EG10319----0.0f0-----
EG10151-----0.0f0----
EG10150------0.0f0---
EG10149-------0.0f0--
EG10147--------0.0f0-
EG10146---------0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- TAP-CPLX (MCP-IV) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.200, average score: 0.999)
  Genes in pathway or complex:
             0.9973 0.9958 EG10987 (tap) TAP-MONOMER (Tap)
   *in cand* 0.9994 0.9989 EG10149 (cheW) CHEW-MONOMER (CheW)
   *in cand* 0.9994 0.9989 EG10146 (cheA) CHEA-SMALL (CheA(S))
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9986 EG10147 (cheB) PHOSPHO-CHEB (CheB-Pasp)
   *in cand* 0.9993 0.9985 EG10150 (cheY) MONOMER0-4170 (CheY-acetylated)
   *in cand* 0.9992 0.9986 EG10151 (cheZ) CHEZ-MONOMER (CheZ)
   *in cand* 0.9991 0.9987 EG10319 (flhC) MONOMER0-2488 (FlhC)
   *in cand* 0.9991 0.9987 EG10320 (flhD) EG10320-MONOMER (FlhD)
   *in cand* 0.9993 0.9988 EG10601 (motA) MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotA protein, proton conductor component of motor; no effect on switching)
   *in cand* 0.9991 0.9985 EG10602 (motB) MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall)
   *in cand* 0.9993 0.9987 G7028 (flhB) G7028-MONOMER (flagellar biosynthesis protein FlhB)

- FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex) (degree of match pw to cand: 0.154, degree of match cand to pw: 0.200, average score: 0.999)
  Genes in pathway or complex:
             0.9972 0.9929 EG11346 (fliE) EG11346-MONOMER (flagellar basal-body protein FliE)
             0.9978 0.9932 EG11347 (fliF) FLIF-FLAGELLAR-MS-RING (flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein)
             0.9965 0.9917 G365 (flgI) FLGI-FLAGELLAR-P-RING (flagellar P-ring protein FlgI)
             0.9972 0.9921 G363 (flgG) FLGG-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgG)
             0.9968 0.9925 G362 (flgF) FLGF-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgF)
             0.9976 0.9930 G359 (flgC) FLGC-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgC)
             0.9975 0.9942 G358 (flgB) FLGB-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgB)
   *in cand* 0.9991 0.9985 EG10602 (motB) MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall)
   *in cand* 0.9993 0.9988 EG10601 (motA) MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotA protein, proton conductor component of motor; no effect on switching)
             0.9967 0.9919 G364 (flgH) FLGH-FLAGELLAR-L-RING (flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein)
             0.9976 0.9923 EG11654 (fliG) FLIG-FLAGELLAR-SWITCH-PROTEIN (flagellar motor switch protein FliG)
             0.9979 0.9937 EG10323 (fliM) FLIM-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliM)
             0.9981 0.9938 EG10324 (fliN) FLIN-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliN)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9989 EG10146 (cheA) CHEA-SMALL (CheA(S))
   *in cand* 0.9993 0.9986 EG10147 (cheB) PHOSPHO-CHEB (CheB-Pasp)
   *in cand* 0.9994 0.9989 EG10149 (cheW) CHEW-MONOMER (CheW)
   *in cand* 0.9993 0.9985 EG10150 (cheY) MONOMER0-4170 (CheY-acetylated)
   *in cand* 0.9992 0.9986 EG10151 (cheZ) CHEZ-MONOMER (CheZ)
   *in cand* 0.9991 0.9987 EG10319 (flhC) MONOMER0-2488 (FlhC)
   *in cand* 0.9991 0.9987 EG10320 (flhD) EG10320-MONOMER (FlhD)
   *in cand* 0.9993 0.9987 G7028 (flhB) G7028-MONOMER (flagellar biosynthesis protein FlhB)

- TRG-CPLX (MCP-III) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.200, average score: 0.999)
  Genes in pathway or complex:
             0.9981 0.9971 EG11018 (trg) TRG-MONOMER (Trg)
   *in cand* 0.9994 0.9989 EG10149 (cheW) CHEW-MONOMER (CheW)
   *in cand* 0.9994 0.9989 EG10146 (cheA) CHEA-SMALL (CheA(S))
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9986 EG10147 (cheB) PHOSPHO-CHEB (CheB-Pasp)
   *in cand* 0.9993 0.9985 EG10150 (cheY) MONOMER0-4170 (CheY-acetylated)
   *in cand* 0.9992 0.9986 EG10151 (cheZ) CHEZ-MONOMER (CheZ)
   *in cand* 0.9991 0.9987 EG10319 (flhC) MONOMER0-2488 (FlhC)
   *in cand* 0.9991 0.9987 EG10320 (flhD) EG10320-MONOMER (FlhD)
   *in cand* 0.9993 0.9988 EG10601 (motA) MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotA protein, proton conductor component of motor; no effect on switching)
   *in cand* 0.9991 0.9985 EG10602 (motB) MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall)
   *in cand* 0.9993 0.9987 G7028 (flhB) G7028-MONOMER (flagellar biosynthesis protein FlhB)

- CPLX0-3930 (FlhDC transcriptional dual regulator) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.200, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9991 0.9987 EG10319 (flhC) MONOMER0-2488 (FlhC)
   *in cand* 0.9991 0.9987 EG10320 (flhD) EG10320-MONOMER (FlhD)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9989 EG10146 (cheA) CHEA-SMALL (CheA(S))
   *in cand* 0.9993 0.9986 EG10147 (cheB) PHOSPHO-CHEB (CheB-Pasp)
   *in cand* 0.9994 0.9989 EG10149 (cheW) CHEW-MONOMER (CheW)
   *in cand* 0.9993 0.9985 EG10150 (cheY) MONOMER0-4170 (CheY-acetylated)
   *in cand* 0.9992 0.9986 EG10151 (cheZ) CHEZ-MONOMER (CheZ)
   *in cand* 0.9993 0.9988 EG10601 (motA) MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotA protein, proton conductor component of motor; no effect on switching)
   *in cand* 0.9991 0.9985 EG10602 (motB) MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall)
   *in cand* 0.9993 0.9987 G7028 (flhB) G7028-MONOMER (flagellar biosynthesis protein FlhB)

- TSR-CPLX (MCP-I) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.200, average score: 0.999)
  Genes in pathway or complex:
             0.9954 0.9919 EG11034 (tsr) TSR-MONOMER (Tsr)
   *in cand* 0.9994 0.9989 EG10146 (cheA) CHEA-SMALL (CheA(S))
   *in cand* 0.9994 0.9989 EG10149 (cheW) CHEW-MONOMER (CheW)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9986 EG10147 (cheB) PHOSPHO-CHEB (CheB-Pasp)
   *in cand* 0.9993 0.9985 EG10150 (cheY) MONOMER0-4170 (CheY-acetylated)
   *in cand* 0.9992 0.9986 EG10151 (cheZ) CHEZ-MONOMER (CheZ)
   *in cand* 0.9991 0.9987 EG10319 (flhC) MONOMER0-2488 (FlhC)
   *in cand* 0.9991 0.9987 EG10320 (flhD) EG10320-MONOMER (FlhD)
   *in cand* 0.9993 0.9988 EG10601 (motA) MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotA protein, proton conductor component of motor; no effect on switching)
   *in cand* 0.9991 0.9985 EG10602 (motB) MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall)
   *in cand* 0.9993 0.9987 G7028 (flhB) G7028-MONOMER (flagellar biosynthesis protein FlhB)

- TAR-CPLX (MCP-II) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.200, average score: 0.999)
  Genes in pathway or complex:
             0.9980 0.9969 EG10988 (tar) TAR-MONOMER (Tar)
   *in cand* 0.9994 0.9989 EG10149 (cheW) CHEW-MONOMER (CheW)
   *in cand* 0.9994 0.9989 EG10146 (cheA) CHEA-SMALL (CheA(S))
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9986 EG10147 (cheB) PHOSPHO-CHEB (CheB-Pasp)
   *in cand* 0.9993 0.9985 EG10150 (cheY) MONOMER0-4170 (CheY-acetylated)
   *in cand* 0.9992 0.9986 EG10151 (cheZ) CHEZ-MONOMER (CheZ)
   *in cand* 0.9991 0.9987 EG10319 (flhC) MONOMER0-2488 (FlhC)
   *in cand* 0.9991 0.9987 EG10320 (flhD) EG10320-MONOMER (FlhD)
   *in cand* 0.9993 0.9988 EG10601 (motA) MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotA protein, proton conductor component of motor; no effect on switching)
   *in cand* 0.9991 0.9985 EG10602 (motB) MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall)
   *in cand* 0.9993 0.9987 G7028 (flhB) G7028-MONOMER (flagellar biosynthesis protein FlhB)

- CPLX0-7452 (Flagellum) (degree of match pw to cand: 0.111, degree of match cand to pw: 0.300, average score: 0.998)
  Genes in pathway or complex:
             0.9980 0.9968 EG10841 (fliD) EG10841-MONOMER (flagellar cap protein FliD; filament capping protein; enables filament assembly)
             0.9984 0.9977 EG10321 (fliC) EG10321-MONOMER (flagellar biosynthesis; flagellin, filament structural protein)
             0.9966 0.9915 EG11545 (flgL) EG11545-MONOMER (flagellar biosynthesis; hook-filament junction protein)
             0.9969 0.9916 EG11967 (flgK) EG11967-MONOMER (flagellar biosynthesis, hook-filament junction protein 1)
             0.9972 0.9926 G361 (flgE) G361-MONOMER (flagellar hook protein FlgE)
             0.9992 0.9985 G370 (flhA) G370-MONOMER (flagellar biosynthesis protein FlhA)
   *in cand* 0.9993 0.9987 G7028 (flhB) G7028-MONOMER (flagellar biosynthesis protein FlhB)
             0.9879 0.9868 EG11224 (fliO) EG11224-MONOMER (flagellar biosynthesis protein FliO)
             0.9980 0.9932 EG11975 (fliP) EG11975-MONOMER (flagellar biosynthesis protein FliP)
             0.9974 0.9928 EG11976 (fliQ) EG11976-MONOMER (flagellar biosynthesis protein FliQ)
             0.9980 0.9939 EG11977 (fliR) EG11977-MONOMER (flagellar biosynthesis protein FliR)
             0.9957 0.9848 EG11656 (fliH) EG11656-MONOMER (flagellar biosynthesis protein FliH)
             0.9977 0.9924 G377 (fliI) G377-MONOMER (flagellum-specific ATP synthase FliI)
             0.9958 0.9865 G378 (fliJ) G378-MONOMER (flagellar biosynthesis protein FliJ)
             0.9981 0.9938 EG10324 (fliN) FLIN-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliN)
             0.9979 0.9937 EG10323 (fliM) FLIM-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliM)
             0.9976 0.9923 EG11654 (fliG) FLIG-FLAGELLAR-SWITCH-PROTEIN (flagellar motor switch protein FliG)
             0.9967 0.9919 G364 (flgH) FLGH-FLAGELLAR-L-RING (flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein)
   *in cand* 0.9993 0.9988 EG10601 (motA) MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotA protein, proton conductor component of motor; no effect on switching)
   *in cand* 0.9991 0.9985 EG10602 (motB) MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall)
             0.9975 0.9942 G358 (flgB) FLGB-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgB)
             0.9976 0.9930 G359 (flgC) FLGC-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgC)
             0.9968 0.9925 G362 (flgF) FLGF-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgF)
             0.9972 0.9921 G363 (flgG) FLGG-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgG)
             0.9965 0.9917 G365 (flgI) FLGI-FLAGELLAR-P-RING (flagellar P-ring protein FlgI)
             0.9978 0.9932 EG11347 (fliF) FLIF-FLAGELLAR-MS-RING (flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein)
             0.9972 0.9929 EG11346 (fliE) EG11346-MONOMER (flagellar basal-body protein FliE)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9989 EG10146 (cheA) CHEA-SMALL (CheA(S))
   *in cand* 0.9993 0.9986 EG10147 (cheB) PHOSPHO-CHEB (CheB-Pasp)
   *in cand* 0.9994 0.9989 EG10149 (cheW) CHEW-MONOMER (CheW)
   *in cand* 0.9993 0.9985 EG10150 (cheY) MONOMER0-4170 (CheY-acetylated)
   *in cand* 0.9992 0.9986 EG10151 (cheZ) CHEZ-MONOMER (CheZ)
   *in cand* 0.9991 0.9987 EG10319 (flhC) MONOMER0-2488 (FlhC)
   *in cand* 0.9991 0.9987 EG10320 (flhD) EG10320-MONOMER (FlhD)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10146 EG10149 EG10319 EG10320 EG10601 EG10602 (centered at EG10601)
EG10147 EG10150 EG10151 G7028 (centered at EG10150)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7028   EG10602   EG10601   EG10320   EG10319   EG10151   EG10150   EG10149   EG10147   EG10146   
317/623271/623265/62380/62383/623128/623245/623250/623269/623293/623
AAEO224324:0:Tyes720-0-------
AAVE397945:0:Tyes2363236023591023622361232823252329
ABAC204669:0:Tyes11519721971---14072482450
ABAU360910:0:Tyes1232011110695
ABUT367737:0:Tyes1538-0---156326786783
ACAU438753:0:Tyes19524---0-4441
ACEL351607:0:Tyes910---935-937941
ACRY349163:8:Tyes23110---817814816813
ADEH290397:0:Tyes98787788---7810776773
AEHR187272:0:Tyes0519520--651187
AFUL224325:0:Tyes-------410
AHYD196024:0:Tyes3442234747--35034935706
AMAR329726:9:Tyes------0---
AMET293826:0:Tyes235602366---1190278823512350
AORE350688:0:Tyes308-299----0313314
ASAL382245:5:Tyes03332--972971280628102805
ASP232721:2:Tyes91290990801911910882879883
ASP62928:0:Tyes0355354352353367366358362357
ASP76114:2:Tyes0237--------
BABO262698:0:Tno09003-------
BAFZ390236:2:Fyes0-9---312307310425
BAMB339670:3:Tno17320112116105
BAMB398577:3:Tno17320112116105
BAMY326423:0:Tyes27801---781284282283
BANT260799:0:Tno37631733175---0--327
BANT261594:2:Tno3723283163---0---
BANT568206:2:Tyes018341836---402--56
BANT592021:2:Tno39933453347---0--343
BAPH198804:0:Tyes0---------
BAPH372461:0:Tyes0---------
BBAC264462:0:Tyes293902878---1544307230683070
BBAC360095:0:Tyes25020-------
BBRO257310:0:Tyes1232011110695
BBUR224326:21:Fno0-9---289284287387
BCAN483179:0:Tno09964-------
BCEN331271:2:Tno0131416154510611
BCEN331272:3:Tyes16320112116105
BCER226900:1:Tyes36331433144---0--324
BCER288681:0:Tno34730493050---0--309
BCER315749:1:Tyes35820852086---0--317
BCER405917:1:Tyes-30443045---0--315
BCER572264:1:Tno36632243225---0--328
BCLA66692:0:Tyes26810------610
BGAR290434:2:Fyes0-9---304-302416
BHAL272558:0:Tyes8591673----014018551402
BHER314723:0:Fyes0-9---300-298401
BJAP224911:0:Fyes545934306535---7135197319760
BLIC279010:0:Tyes32401---908330328329
BMAL243160:1:Tno0-1416154511712
BMAL320388:1:Tno012131514459610
BMAL320389:1:Tyes17320113126115
BMEL224914:0:Tno9780973-------
BMEL359391:0:Tno08843-------
BOVI236:0:Tyes07963-------
BPAR257311:0:Tno1232011110695
BPER257313:0:Tyes309320198574
BPET94624:0:Tyes1332011110695
BPSE272560:1:Tyes0131416154510611
BPSE320372:1:Tno0141517165611712
BPSE320373:0:Tno---------0
BPSE320373:1:Tno01314161545106-
BPUM315750:0:Tyes27801----284282283
BSP107806:2:Tyes0---------
BSP36773:2:Tyes17320112116105
BSP376:0:Tyes30392726----4929150
BSUB:0:Tyes29001---991-294295
BSUI204722:0:Tyes09724-------
BSUI470137:0:Tno011734-------
BTHA271848:0:Tno---------0
BTHA271848:1:Tno01415171656117-
BTHU281309:1:Tno36230373038---0--324
BTHU412694:1:Tno32827932794---0--293
BTUR314724:0:Fyes0-----297292295398
BVIE269482:7:Tyes17320112116105
BWEI315730:4:Tyes37330403041---0--330
BXEN266265:1:Tyes-781-21132114-0---
CABO218497:0:Tyes0---------
CACE272562:1:Tyes204117441745----021142112
CAULO:0:Tyes6541161321---160130
CBEI290402:0:Tyes259903173----316431682652
CBOT36826:1:Tno42801----534532530
CBOT441770:0:Tyes41201----515513511
CBOT441771:0:Tno35701----462460458
CBOT441772:1:Tno42301----507505503
CBOT498213:1:Tno42601----521519517
CBOT508765:1:Tyes6156-----024
CBOT515621:2:Tyes4384430----539537535
CBOT536232:0:Tno56701----672670668
CCAV227941:1:Tyes0---------
CCON360104:2:Tyes0-----1045142-141
CCUR360105:0:Tyes1165-----01228-1229
CDES477974:0:Tyes04645----444243
CDIF272563:1:Tyes6-0----286292289
CFEL264202:1:Tyes0---------
CFET360106:0:Tyes112-0---1090102-101
CHUT269798:0:Tyes-0--------
CHYD246194:0:Tyes4510----36870
CJAP155077:0:Tyes54310--941942173917351740
CJEJ192222:0:Tyes48-50---817--0
CJEJ195099:0:Tno47-49---897--0
CJEJ354242:2:Tyes47-49---791--0
CJEJ360109:0:Tyes951-949---0--1013
CJEJ407148:0:Tno52-54---829--0
CKLU431943:1:Tyes5813169----53753901537
CMET456442:0:Tyes--------10
CMUR243161:1:Tyes0---------
CNOV386415:0:Tyes585352----024
CPHY357809:0:Tyes24172426-----024122411
CPNE115711:1:Tyes0---------
CPNE115713:0:Tno0---------
CPNE138677:0:Tno0---------
CPNE182082:0:Tno0---------
CPRO264201:0:Fyes0---------
CPSY167879:0:Tyes4200429--426425433428427
CSAL290398:0:Tyes0910121112748
CSP501479:6:Fyes------31-0
CSP501479:7:Fyes905-------
CSP78:2:Tyes11082800587---4130
CTET212717:0:Tyes0------70-66
CTRA471472:0:Tyes0---------
CTRA471473:0:Tno0---------
CVIO243365:0:Tyes010331032--24822481247424692475
DARO159087:0:Tyes1710--15145104
DDES207559:0:Tyes032631356---5168917531755
DHAF138119:0:Tyes05857---1658181719
DOLE96561:0:Tyes------9370
DPSY177439:2:Tyes3224----9120
DRED349161:0:Tyes204502095----209320912092
DSHI398580:5:Tyes01254-------
DVUL882:0:Tyes0---------
DVUL882:1:Tyes-10071006---162430820
ECAR218491:0:Tyes113201109584
ECOL199310:0:Tno01011141223849
ECOL316407:0:Tno0910121112738
ECOL331111:6:Tno01011131223849
ECOL362663:0:Tno089111012637
ECOL364106:1:Tno0910121123748
ECOL405955:2:Tyes089111012637
ECOL409438:6:Tyes0910121112738
ECOL413997:0:Tno0910121112738
ECOL439855:4:Tno1532011110594
ECOL469008:0:Tno1232011110594
ECOL481805:0:Tno1232011110594
ECOL585034:0:Tno01011131212839
ECOL585035:0:Tno0910121112738
ECOL585055:0:Tno01011131212839
ECOL585056:2:Tno01011131212839
ECOL585057:0:Tno11210-109483
ECOL585397:0:Tno0910121112738
ECOL83334:0:Tno0910121112738
ECOLI:0:Tno01011131212839
ECOO157:0:Tno0910121112738
EFER585054:1:Tyes65320116155144
ELIT314225:0:Tyes------1-0-
ESP42895:1:Tyes0202123225618719
FJOH376686:0:Tyes-0--------
FNOD381764:0:Tyes925-----427770640
GBET391165:0:Tyes------0---
GKAU235909:1:Tyes013141313----645
GMET269799:1:Tyes264001---2665622618623
GOXY290633:5:Tyes138310---1416141314151412
GSUL243231:0:Tyes2326142613---0891738882
GTHE420246:1:Tyes013461345----534
GURA351605:0:Tyes201218961895---2036304
HACI382638:1:Tyes176-244---6650-1
HARS204773:0:Tyes3433323313283290340336339335
HAUR316274:2:Tyes--------0-
HCHE349521:0:Tyes453347454746--45274528431010
HHAL349124:0:Tyes25501--250251195819521959
HHEP235279:0:Tyes581-47---3762220221
HMAR272569:8:Tyes--------01
HMOD498761:0:Tyes73610----197521741
HMUK485914:1:Tyes--------01
HNEP81032:0:Tyes226370-------
HPY:0:Tno377-422---6800-1
HPYL357544:1:Tyes378-423---0635-634
HPYL85963:0:Tno344-388---0627-626
HSAL478009:4:Tyes--------10
HSP64091:2:Tno--------10
ILOI283942:0:Tyes831047---56034
JSP290400:1:Tyes137013541366---0-63
JSP375286:0:Tyes1018102910301033103201021102510221026
KRAD266940:2:Fyes08----1365-13671374
LBIF355278:2:Tyes22500----132726913212109
LBIF456481:2:Tno23220----137128213652174
LBOR355276:1:Tyes11540----8198168141394
LBOR355277:1:Tno6201437----7827857870
LCHO395495:0:Tyes9182962973013002942958250899
LINN272626:1:Tno076------13
LINT189518:1:Tyes21270165---193919431945759
LINT267671:1:Tno016461522---149145143147
LINT363253:3:Tyes4810---44687654661
LMON169963:0:Tno076------13
LMON265669:0:Tyes076------13
LPNE272624:0:Tno0533532-------
LPNE297245:1:Fno0503502-------
LPNE297246:1:Fyes0527526-------
LPNE400673:0:Tno0546545-------
LSPH444177:1:Tyes129210----129812961297
LWEL386043:0:Tyes076------13
MACE188937:0:Tyes-------610
MAQU351348:2:Tyes15806807--78056
MBAR269797:1:Tyes-------5-0
MBUR259564:0:Tyes-------034
MCAP243233:0:Tyes--------0-
MEXT419610:0:Tyes2198211223---0-11271124
MFLA265072:0:Tyes161112151401728
MHUN323259:0:Tyes--------01
MLOT266835:2:Tyes0234-------
MMAG342108:0:Tyes29622562255---3178-03
MMAR267377:0:Tyes-------012
MMAR368407:0:Tyes--------0-
MMAR394221:0:Tyes13199441902---0-5148
MMAR402880:1:Tyes-------012
MMAR426368:0:Tyes-------012
MMAR444158:0:Tyes-------210
MMAZ192952:0:Tyes-------010171016
MPET420662:1:Tyes248522822281227822792283-221110
MSP266779:3:Tyes23019-------
MSP400668:0:Tyes78901--784785660664659
MSP409:2:Tyes955961950---0-25222525
MTHE264732:0:Tyes31712520----269-270
MVAN350058:0:Tyes------0---
MXAN246197:0:Tyes15400----3758376337593765
NEUR228410:0:Tyes2484012404240319131912185318471854
NEUT335283:2:Tyes22211054254310781079970975969
NHAM323097:2:Tyes099----1708-1918-
NMUL323848:3:Tyes971970969967968-0-1-
NOCE323261:1:Tyes1295-0-------
NPHA348780:2:Tyes--------10
NSP35761:1:Tyes089---2864-28682873
NSP387092:0:Tyes372-729---338-0341
NWIN323098:0:Tyes617717716---2038-0-
OANT439375:4:Tyes24019-------
OCAR504832:0:Tyes01107----1827-1709-
OIHE221109:0:Tyes0982983----54981
PABY272844:0:Tyes-------510
PAER208963:0:Tyes350851555156--35003501405
PAER208964:0:Tno129048444845--12981297405
PATL342610:0:Tyes173310--17271728172217251726
PCAR338963:0:Tyes167989----2080203200
PENT384676:0:Tyes1311151116--78056
PFLU205922:0:Tyes105110--10641063107110661065
PFLU216595:1:Tyes377310--37663767441344104415
PFLU220664:0:Tyes107810--10931092110010951094
PHAL326442:1:Tyes015969--6513-7
PHOR70601:0:Tyes-------056
PING357804:0:Tyes1701-------
PLUM243265:0:Fyes4832011110594
PMEN399739:0:Tyes222310--2217221822109562216
PMOB403833:0:Tyes1278-0----282891271
PPRO298386:2:Tyes88710--893892898730726
PPUT160488:0:Tno20570571--78056
PPUT351746:0:Tyes032803281--1413211615
PPUT76869:0:Tno1310721073--78056
PSP117:0:Tyes0---------
PSP296591:2:Tyes--------0-
PSTU379731:0:Tyes1412341235--78056
PSYR205918:0:Tyes288410--28782879219216221
PSYR223283:2:Tyes106039933994--10661065305
PTHE370438:0:Tyes04546----444243
RALB246199:0:Tyes--------0-
RCAS383372:0:Tyes------0-2318-
RDEN375451:4:Tyes0401114---2719271719662716
RETL347834:5:Tyes123616---0241
REUT264198:2:Tyes113201109584
REUT381666:1:Tyes173201109584
RFER338969:1:Tyes313931363135313331343138313735740
RLEG216596:6:Tyes123616---0241
RMET266264:1:Tyes133201109584
RPAL258594:0:Tyes37721883----1049-05
RPAL316055:0:Tyes630244225---0270274269
RPAL316056:0:Tyes622205186---0377837763784
RPAL316057:0:Tyes414796----0-24132416
RPAL316058:0:Tyes26022194----0-27482751
RPOM246200:1:Tyes01931-------
RRUB269796:1:Tyes1418443442---14349229230
RSOL267608:0:Tyes016171918-813914
RSOL267608:1:Tyes-----0----
RSP357808:0:Tyes------295-0-
RSPH272943:4:Tyes153027922806---88015100879
RSPH349101:2:Tno147127422756---86414510863
RSPH349102:5:Tyes136924442458---1508134901509
SACI56780:0:Tyes1561516---1301112
SALA317655:1:Tyes119611921191-----0-
SBAL399599:3:Tyes17210---1715171610009961001
SBAL402882:1:Tno16210---16151616914910915
SBOY300268:1:Tyes6--0154-3-
SDEG203122:0:Tyes1010640--34952948953
SDEN318161:0:Tyes023482349--65201320162011
SDYS300267:1:Tyes-0675677676-----
SENT209261:0:Tno113201109584
SENT220341:0:Tno089111012637
SENT295319:0:Tno10320198574
SENT321314:2:Tno089111012637
SENT454169:2:Tno0910121112738
SFLE198214:0:Tyes01415-166712813
SFLE373384:0:Tno01415-166712813
SFUM335543:0:Tyes------0917-920
SGLO343509:3:Tyes210210121002097-20992098-
SHAL458817:0:Tyes028992898--651287
SHIGELLA:0:Tno01314-155611712
SLAC55218:1:Fyes012391-------
SLOI323850:0:Tyes129927412742--13051304304
SMED366394:3:Tyes113615---4130
SMEL266834:2:Tyes113515---4130
SONE211586:1:Tyes107221332134--10651066150
SPEA398579:0:Tno136901--13751374138113771376
SPRO399741:1:Tyes0910121112738
SRUB309807:1:Tyes089---1921--
SSED425104:0:Tyes311401--31083109136133137
SSON300269:1:Tyes1532011110594
SSP292414:1:Tyes------02-3
SSP292414:2:Tyes17013-------
SSP321332:0:Tyes---------0
SSP644076:2:Fyes------02-3
SSP644076:6:Fyes16012-------
SSP94122:1:Tyes01595---65902898903
STHE292459:0:Tyes1671------0185181
STYP99287:1:Tyes089111012637
SWOL335541:0:Tyes59510----15931046601
TCRU317025:0:Tyes0707708--651215888
TDEN243275:0:Tyes0------15245911426
TDEN292415:0:Tyes54301375376385377386
TDEN326298:0:Tyes0354----1020309316875
TELO197221:0:Tyes------0---
TERY203124:0:Tyes--------30
TKOD69014:0:Tyes-------04-
TLET416591:0:Tyes4551674----8540583462
TMAR243274:0:Tyes497-266----3070291
TPAL243276:0:Tyes347-357----762640
TPET390874:0:Tno0-242----198502215
TPSE340099:0:Tyes227710711----0-221
TROS309801:0:Tyes601-------
TSP1755:0:Tyes115610----935-1150
TSP28240:0:Tyes0-236----193514210
TTEN273068:0:Tyes84510----571489839
TTUR377629:0:Tyes17165730--2726127430
UMET351160:0:Tyes-------0557556
VCHO:0:Tyes12250---11701171-512-
VCHO:1:Fyes-------0-2
VCHO345073:0:Tno-------260
VCHO345073:1:Tno12700---12201221---
VEIS391735:1:Tyes03462346191791634643463122812251229
VFIS312309:2:Tyes11640---115711581151-1156
VPAR223926:0:Tyes-10-------
VPAR223926:1:Tyes11----56034
VVUL196600:1:Tyes-------406
VVUL196600:2:Tyes16260---16201621---
VVUL216895:0:Tno-------406
VVUL216895:1:Tno15740---15801579---
WSUC273121:0:Tyes1260-----04245441331
XAXO190486:0:Tyes4918061805---44979015
XCAM190485:0:Tyes4417881787---395019
XCAM314565:0:Tno014601459---5404526
XCAM316273:0:Tno148901---1482143914331454
XCAM487884:0:Tno5017111710---445017
XORY291331:0:Tno195201---1957219122002177
XORY342109:0:Tyes187401---1879211021182097
XORY360094:0:Tno200356075605---201514049
YENT393305:1:Tyes01011131223849
YPES187410:5:Tno69621-021206185
YPES214092:3:Tno11821-016154143
YPES349746:2:Tno0249724982500249931783177249531762496
YPES360102:3:Tyes0701702704703686687699688700
YPES377628:2:Tno388151618170113214
YPES386656:2:Tno0457458460459442443455444456
YPSE273123:2:Tno0740741742-730731738732739
YPSE349747:2:Tno694320113125114
ZMOB264203:0:Tyes582534535---1035



Back to top