CANDIDATE ID: 157

CANDIDATE ID: 157

NUMBER OF GENES: 10
AVERAGE SCORE:    9.9938284e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7326 (iscR) (b2531)
   Products of gene:
     - G7326-MONOMER (IscR transcriptional dual regulator)
       Regulatees:
        TU0-14811 (rnlA)
        TU0-8481 (nfuA)
        TU0-8480 (erpA)
        TU0-8482 (ydiU)
        TU0-8484 (napFDAGHBC)
        TU0-1881 (iscRSUA)
        TU0-2621 (sufABCDSE)
        TU00288 (hyaABCDEF)

- G7325 (iscS) (b2530)
   Products of gene:
     - G7325-MONOMER (cysteine desulfurase monomer)
     - CPLX0-248 (cysteine desulfurase)
       Reactions:
        a ThiI sulfur-carrier protein + L-cysteine  ->  a ThiI persulfide + L-alanine
         In pathways
         THISYN-PWY (thiamin biosynthesis I)
        L-cysteine + a protein L-cysteine  ->  a protein-S-sulfanylcysteine + L-alanine
         In pathways
         PWY0-1061 (superpathway of alanine biosynthesis)
         PWY0-1021 (alanine biosynthesis III)

- G7321 (yfgM) (b2513)
   Products of gene:
     - G7321-MONOMER (conserved protein)

- G7320 (bamB) (bamB)
   Products of gene:
     - G7320-MONOMER (BamB)
     - CPLX0-3933 (Outer Membrane Protein Assembly Complex)

- G7319 (der) (b2511)
   Products of gene:
     - G7319-MONOMER (50S ribosomal subunit stability factor)
       Reactions:
        GTP + H2O  ->  GDP + phosphate + H+

- EG12401 (rlmN) (b2517)
   Products of gene:
     - EG12401-MONOMER (23S rRNA m2A2503 methyltransferase)
       Reactions:
        S-adenosyl-L-methionine + adenine2503 in 23S rRNA  ->  S-adenosyl-L-homocysteine + 2-methyladenine2503 in 23S rRNA

- EG10650 (ndk) (b2518)
   Products of gene:
     - NUCLEOSIDE-DIP-KIN-MONOMER (Ndk)
     - NUCLEOSIDE-DIP-KIN-CPLX (nucleoside diphosphate kinase)
       Reactions:
        a ribonucleoside diphosphate + ATP  ->  a ribonucleoside triphosphate + ADP
        UDP + ATP  ->  UTP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         PWY0-162 (pyrimidine ribonucleotides de novo biosynthesis)
         PWY-5687 (pyrimidine ribonucleotides interconversion)
        CDP + ATP  ->  CTP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         PWY0-162 (pyrimidine ribonucleotides de novo biosynthesis)
         PWY0-163 (salvage pathways of pyrimidine ribonucleotides)
         PWY-5687 (pyrimidine ribonucleotides interconversion)
        dUDP + ATP  ->  dUTP + ADP + H+
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        dCDP + ATP  ->  dCTP + ADP + H+
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        dTDP + ATP  ->  dTTP + ADP + H+
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        2'-deoxyadenosine-5'-diphosphate + ATP  ->  dATP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6126 (adenosine nucleotides de novo biosynthesis)
        2'-deoxyguanosine-5'-diphosphate + ATP  ->  dGTP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6125 (guanosine nucleotides de novo biosynthesis)
        GDP + ATP  ->  GTP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6125 (guanosine nucleotides de novo biosynthesis)
         PPGPPMET-PWY (ppGpp biosynthesis)

- EG10453 (hisS) (b2514)
   Products of gene:
     - HISS-MONOMER (histidyl-tRNA synthetase)
     - HISS-CPLX (histidyl-tRNA synthetase)
       Reactions:
        tRNAhis + L-histidine + ATP  ->  L-histidyl-tRNAhis + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)

- EG10370 (ispG) (b2515)
   Products of gene:
     - EG10370-MONOMER (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase)
       Reactions:
        2-C-methyl-D-erythritol-2,4-cyclodiphosphate + 2 a reduced ferredoxin  ->  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate + 2 an oxidized ferredoxin + H2O
         In pathways
         PWY-5121 (PWY-5121)
         PWY-6270 (PWY-6270)
         NONMEVIPP-PWY (methylerythritol phosphate pathway)

- EG10015 (rodZ) (b2516)
   Products of gene:
     - EG10015-MONOMER (rod shape-determining membrane protein)



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ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 132
Effective number of orgs (counting one per cluster within 468 clusters): 88

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175810
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295310
YPES386656 ncbi Yersinia pestis Pestoides F10
YPES377628 ncbi Yersinia pestis Nepal51610
YPES360102 ncbi Yersinia pestis Antiqua10
YPES349746 ncbi Yersinia pestis Angola10
YPES214092 ncbi Yersinia pestis CO9210
YPES187410 ncbi Yersinia pestis KIM 1010
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808110
VVUL216895 ncbi Vibrio vulnificus CMCP610
VVUL196600 ncbi Vibrio vulnificus YJ01610
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 221063310
VFIS312309 ncbi Vibrio fischeri ES11410
VCHO345073 ncbi Vibrio cholerae O39510
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696110
TTUR377629 ncbi Teredinibacter turnerae T79019
TDEN292415 ncbi Thiobacillus denitrificans ATCC 2525910
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT210
SSP94122 ncbi Shewanella sp. ANA-310
SSON300269 ncbi Shigella sonnei Ss04610
SSED425104 ncbi Shewanella sediminis HAW-EB310
SPRO399741 ncbi Serratia proteamaculans 56810
SPEA398579 ncbi Shewanella pealeana ATCC 70034510
SONE211586 ncbi Shewanella oneidensis MR-110
SLOI323850 ncbi Shewanella loihica PV-410
SHIGELLA ncbi Shigella flexneri 2a str. 2457T10
SHAL458817 ncbi Shewanella halifaxensis HAW-EB410
SGLO343509 ncbi Sodalis glossinidius morsitans10
SFLE373384 ncbi Shigella flexneri 5 str. 840110
SFLE198214 ncbi Shigella flexneri 2a str. 30110
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47610
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915010
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1810
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty210
SDYS300267 ncbi Shigella dysenteriae Sd19710
SDEN318161 ncbi Shewanella denitrificans OS21710
SDEG203122 ncbi Saccharophagus degradans 2-4010
SBOY300268 ncbi Shigella boydii Sb22710
SBAL402882 ncbi Shewanella baltica OS18510
SBAL399599 ncbi Shewanella baltica OS19510
RSOL267608 ncbi Ralstonia solanacearum GMI10009
RMET266264 ncbi Ralstonia metallidurans CH3410
RFER338969 ncbi Rhodoferax ferrireducens T1189
REUT381666 ncbi Ralstonia eutropha H1610
REUT264198 ncbi Ralstonia eutropha JMP13410
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC300010
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a10
PSTU379731 ncbi Pseudomonas stutzeri A150110
PSP56811 Psychrobacter sp.9
PSP296591 ncbi Polaromonas sp. JS6669
PPUT76869 ncbi Pseudomonas putida GB-110
PPUT351746 ncbi Pseudomonas putida F110
PPUT160488 ncbi Pseudomonas putida KT244010
PPRO298386 ncbi Photobacterium profundum SS910
PMUL272843 ncbi Pasteurella multocida multocida Pm709
PMEN399739 ncbi Pseudomonas mendocina ymp10
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO110
PING357804 ncbi Psychromonas ingrahamii 3710
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC12510
PFLU220664 ncbi Pseudomonas fluorescens Pf-510
PFLU216595 ncbi Pseudomonas fluorescens SBW2510
PFLU205922 ncbi Pseudomonas fluorescens Pf0-110
PENT384676 ncbi Pseudomonas entomophila L4810
PATL342610 ncbi Pseudoalteromonas atlantica T6c10
PAER208964 ncbi Pseudomonas aeruginosa PAO110
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA1410
NEUT335283 ncbi Nitrosomonas eutropha C919
NEUR228410 ncbi Nitrosomonas europaea ATCC 197189
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E9
MSP400668 ncbi Marinomonas sp. MWYL110
MPET420662 ncbi Methylibium petroleiphilum PM110
MFLA265072 ncbi Methylobacillus flagellatus KT10
MCAP243233 ncbi Methylococcus capsulatus Bath10
MAQU351348 ncbi Marinobacter aquaeolei VT810
LCHO395495 ncbi Leptothrix cholodnii SP-69
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857810
JSP375286 ncbi Janthinobacterium sp. Marseille10
ILOI283942 ncbi Idiomarina loihiensis L2TR10
HSOM228400 ncbi Haemophilus somnus 23369
HSOM205914 ncbi Haemophilus somnus 129PT9
HINF71421 ncbi Haemophilus influenzae Rd KW209
HINF374930 ncbi Haemophilus influenzae PittEE9
HINF281310 ncbi Haemophilus influenzae 86-028NP9
HHAL349124 ncbi Halorhodospira halophila SL19
HDUC233412 ncbi Haemophilus ducreyi 35000HP9
HCHE349521 ncbi Hahella chejuensis KCTC 239610
HARS204773 ncbi Herminiimonas arsenicoxydans9
ESP42895 Enterobacter sp.10
EFER585054 ncbi Escherichia fergusonii ATCC 3546910
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H710
ECOL585397 ncbi Escherichia coli ED1a10
ECOL585057 ncbi Escherichia coli IAI3910
ECOL585056 ncbi Escherichia coli UMN02610
ECOL585055 ncbi Escherichia coli 5598910
ECOL585035 ncbi Escherichia coli S8810
ECOL585034 ncbi Escherichia coli IAI110
ECOL481805 ncbi Escherichia coli ATCC 873910
ECOL469008 ncbi Escherichia coli BL21(DE3)10
ECOL439855 ncbi Escherichia coli SMS-3-510
ECOL413997 ncbi Escherichia coli B str. REL60610
ECOL409438 ncbi Escherichia coli SE1110
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8910
ECOL362663 ncbi Escherichia coli 53610
ECOL331111 ncbi Escherichia coli E24377A10
ECOL316407 ncbi Escherichia coli K-12 substr. W311010
ECOL199310 ncbi Escherichia coli CFT07310
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104310
DARO159087 ncbi Dechloromonas aromatica RCB10
CVIO243365 ncbi Chromobacterium violaceum ATCC 124729
CSAL290398 ncbi Chromohalobacter salexigens DSM 304310
CPSY167879 ncbi Colwellia psychrerythraea 34H10
CJAP155077 Cellvibrio japonicus10
BVIE269482 ncbi Burkholderia vietnamiensis G49
BSP36773 Burkholderia sp.9
BCEN331272 ncbi Burkholderia cenocepacia HI24249
BCEN331271 ncbi Burkholderia cenocepacia AU 10549
BAMB398577 ncbi Burkholderia ambifaria MC40-69
BAMB339670 ncbi Burkholderia ambifaria AMMD9
ASP76114 ncbi Aromatoleum aromaticum EbN110
ASP62977 ncbi Acinetobacter sp. ADP110
ASP62928 ncbi Azoarcus sp. BH7210
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44910
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL039
APLE416269 ncbi Actinobacillus pleuropneumoniae L209
AHYD196024 Aeromonas hydrophila dhakensis10
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 2327010
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-19
ABOR393595 ncbi Alcanivorax borkumensis SK210
AAVE397945 ncbi Acidovorax citrulli AAC00-19


Names of the homologs of the genes in the group in each of these orgs
  G7326   G7325   G7321   G7320   G7319   EG12401   EG10650   EG10453   EG10370   EG10015   
YPSE349747 YPSIP31758_1167YPSIP31758_1168YPSIP31758_1188YPSIP31758_1189YPSIP31758_1190YPSIP31758_1183YPSIP31758_1182YPSIP31758_1187YPSIP31758_1186YPSIP31758_1185
YPSE273123 YPTB2860YPTB2859YPTB2839YPTB2838YPTB2837YPTB2844YPTB2845YPTB2840YPTB2841YPTB2842
YPES386656 YPDSF_2242YPDSF_2241YPDSF_2222YPDSF_2221YPDSF_2220YPDSF_2227YPDSF_2228YPDSF_2223YPDSF_2224YPDSF_2225
YPES377628 YPN_1240YPN_1241YPN_1261YPN_1262YPN_1263YPN_1256YPN_1255YPN_1260YPN_1259YPN_1258
YPES360102 YPA_2338YPA_2337YPA_2317YPA_2316YPA_2315YPA_2322YPA_2323YPA_2318YPA_2319YPA_2320
YPES349746 YPANGOLA_A0436YPANGOLA_A0435YPANGOLA_A0416YPANGOLA_A0415YPANGOLA_A0414YPANGOLA_A0421YPANGOLA_A0422YPANGOLA_A0417YPANGOLA_A0418YPANGOLA_A0419
YPES214092 YPO2897YPO2896YPO2877YPO2876YPO2875YPO2882YPO2883YPO2878YPO2879YPO2880
YPES187410 Y1333Y1334Y1355Y1356Y1357Y1350Y1349Y1354Y1353Y1352
YENT393305 YE1056YE1057YE1075YE1076YE1077YE1070YE1069YE1074YE1073YE1072
VVUL216895 VV1_0439VV1_0438VV1_0425VV1_0424VV1_0423VV1_0429VV1_0430VV1_0426VV1_0427VV1_0428
VVUL196600 VV0754VV0755VV0768VV0769VV0770VV0764VV0763VV0767VV0766VV0765
VPAR223926 VP0595VP0596VP0610VP0611VP0612VP0605VP0604VP0609VP0608VP0607
VFIS312309 VF0616VF0617VF0631VF0632VF0633VF0626VF0625VF0630VF0629VF0628
VCHO345073 VC0395_A0276VC0395_A0277VC0395_A0290VC0395_A0291VC0395_A0292VC0395_A0286VC0395_A0285VC0395_A0289VC0395_A0288VC0395_A0287
VCHO VC0747VC0748VC0761VC0762VC0763VC0757VC0756VC0760VC0759VC0758
TTUR377629 TERTU_2649TERTU_2648TERTU_2632TERTU_2631TERTU_2630TERTU_2636TERTU_2637TERTU_2633TERTU_2634
TDEN292415 TBD_1163TBD_1164TBD_0596TBD_0597TBD_0598TBD_0591TBD_0590TBD_0595TBD_0594TBD_0593
STYP99287 STM2544STM2543STM2521STM2520STM2519STM2525STM2526STM2522STM2523STM2524
SSP94122 SHEWANA3_2281SHEWANA3_2280SHEWANA3_1231SHEWANA3_1232SHEWANA3_1233SHEWANA3_1226SHEWANA3_2272SHEWANA3_1230SHEWANA3_1229SHEWANA3_1228
SSON300269 SSO_2613SSO_2612SSO_2595SSO_2594SSO_2593SSO_2599SSO_2600SSO_2596SSO_2597SSO_2598
SSED425104 SSED_2872SSED_2871SSED_1434SSED_1435SSED_1436SSED_1429SSED_2862SSED_1433SSED_1432SSED_1431
SPRO399741 SPRO_3628SPRO_3627SPRO_3607SPRO_3606SPRO_3605SPRO_3612SPRO_3613SPRO_3608SPRO_3609SPRO_3610
SPEA398579 SPEA_1487SPEA_1488SPEA_1307SPEA_1308SPEA_1309SPEA_1302SPEA_1498SPEA_1306SPEA_1305SPEA_1304
SONE211586 SO_2263SO_2264SO_3310SO_3309SO_3308SO_3315SO_2274SO_3311SO_3312SO_3313
SLOI323850 SHEW_2318SHEW_2317SHEW_1292SHEW_1293SHEW_1294SHEW_1287SHEW_2310SHEW_1291SHEW_1290SHEW_1289
SHIGELLA S2750YFHOS2731S2730S2729YFGBNDKHISSGCPEYFGA
SHAL458817 SHAL_1571SHAL_1572SHAL_1369SHAL_1370SHAL_1371SHAL_1364SHAL_1580SHAL_1368SHAL_1367SHAL_1366
SGLO343509 SG1770SG1769SG1758SG1757SG1756SG1763SG1764SG1759SG1760SG1761
SFLE373384 SFV_2579SFV_2578SFV_2560SFV_2559SFV_2558SFV_2564SFV_2565SFV_2561SFV_2562SFV_2563
SFLE198214 AAN44077.1AAN44076.1AAN44059.1AAN44058.1AAN44057.1AAN44063.1AAN44064.1AAN44060.1AAN44061.1AAN44062.1
SENT454169 SEHA_C2806SEHA_C2805SEHA_C2778SEHA_C2777SEHA_C2776SEHA_C2783SEHA_C2784SEHA_C2779SEHA_C2781SEHA_C2782
SENT321314 SCH_2538SCH_2537SCH_2518SCH_2517SCH_2516SCH_2522SCH_2523SCH_2519SCH_2520SCH_2521
SENT295319 SPA0322SPA0323SPA0346SPA0347SPA0348SPA0342SPA0341SPA0345SPA0344SPA0343
SENT220341 STY2790STY2789STY2766STY2765STY2764STY2770STY2771STY2767STY2768STY2769
SENT209261 T0312T0313T0335T0336T0337T0331T0330T0334T0333T0332
SDYS300267 SDY_2727SDY_2726SDY_2709SDY_2708SDY_2707SDY_2713SDY_2714SDY_2710SDY_2711SDY_2712
SDEN318161 SDEN_1457SDEN_1458SDEN_1258SDEN_1259SDEN_1260SDEN_1253SDEN_2390SDEN_1257SDEN_1256SDEN_1255
SDEG203122 SDE_1412SDE_1413SDE_1436SDE_1437SDE_1438SDE_1431SDE_1430SDE_1435SDE_1434SDE_1433
SBOY300268 SBO_2555SBO_2554SBO_2537SBO_2536SBO_2535SBO_2541SBO_2542SBO_2538SBO_2539SBO_2540
SBAL402882 SHEW185_2387SHEW185_2386SHEW185_3003SHEW185_3002SHEW185_3001SHEW185_3008SHEW185_2377SHEW185_3004SHEW185_3005SHEW185_3006
SBAL399599 SBAL195_2503SBAL195_2502SBAL195_3146SBAL195_3145SBAL195_3144SBAL195_3151SBAL195_2493SBAL195_3147SBAL195_3148SBAL195_3149
RSOL267608 RSC1018RSC1019RSC1217RSC1218RSC1219RSC1212RSC1211RSC1216RSC1214
RMET266264 RMET_1024RMET_1025RMET_2104RMET_2103RMET_2102RMET_2109RMET_2110RMET_2105RMET_2106RMET_2107
RFER338969 RFER_2176RFER_2177RFER_2305RFER_2304RFER_2303RFER_2310RFER_2311RFER_2306RFER_2307
REUT381666 H16_A1157H16_A1158H16_A2362H16_A2361H16_A2360H16_A2367H16_A2368H16_A2363H16_A2364H16_A2365
REUT264198 REUT_A1057REUT_A1058REUT_A2084REUT_A2083REUT_A2082REUT_A2089REUT_A2090REUT_A2085REUT_A2086REUT_A2087
PSYR223283 PSPTO_1422PSPTO_1423PSPTO_1436PSPTO_1437PSPTO_1438PSPTO_1431PSPTO_1430PSPTO_1435PSPTO_1434PSPTO_1433
PSYR205918 PSYR_1236PSYR_1237PSYR_1250PSYR_1251PSYR_1252PSYR_1245PSYR_1244PSYR_1249PSYR_1248PSYR_1247
PSTU379731 PST_3043PST_3042PST_3029PST_3028PST_3027PST_3034PST_3035PST_3030PST_3031PST_3032
PSP56811 PSYCPRWF_1628PSYCPRWF_1629PSYCPRWF_1899PSYCPRWF_1759PSYCPRWF_1905PSYCPRWF_1906PSYCPRWF_1901PSYCPRWF_1902PSYCPRWF_1903
PSP296591 BPRO_2177BPRO_2178BPRO_2606BPRO_2605BPRO_2604BPRO_2611BPRO_2612BPRO_2607BPRO_2609
PPUT76869 PPUTGB1_0884PPUTGB1_0885PPUTGB1_0898PPUTGB1_0899PPUTGB1_0900PPUTGB1_0893PPUTGB1_0892PPUTGB1_0897PPUTGB1_0896PPUTGB1_0895
PPUT351746 PPUT_0871PPUT_0872PPUT_0885PPUT_0886PPUT_0887PPUT_0880PPUT_0879PPUT_0884PPUT_0883PPUT_0882
PPUT160488 PP_0841PP_0842PP_0855PP_0856PP_0857PP_0850PP_0849PP_0854PP_0853PP_0852
PPRO298386 PBPRA0749PBPRA0750PBPRA0765PBPRA0766PBPRA0767PBPRA0760PBPRA0759PBPRA0764PBPRA0763PBPRA0762
PMUL272843 PM0317PM0318PM2012PM0105PM2007PM1028PM2011PM2010PM2009
PMEN399739 PMEN_3512PMEN_3511PMEN_3498PMEN_3497PMEN_3496PMEN_3503PMEN_3504PMEN_3499PMEN_3500PMEN_3501
PLUM243265 PLU3284PLU3283PLU1378PLU1379PLU1380PLU1373PLU1372PLU1377PLU1376PLU1375
PING357804 PING_1323PING_1324PING_1170PING_1171PING_1172PING_1165PING_3326PING_1169PING_1168PING_1167
PHAL326442 PSHAA2672PSHAA2671PSHAB0136PSHAB0135PSHAB0134PSHAB0141PSHAB0142PSHAB0137PSHAB0138PSHAB0139
PFLU220664 PFL_4966PFL_4965PFL_4952PFL_4951PFL_4950PFL_4957PFL_4958PFL_4953PFL_4954PFL_4955
PFLU216595 PFLU5069PFLU5068PFLU5055PFLU5054PFLU5053PFLU5060PFLU5061PFLU5056PFLU5057PFLU5058
PFLU205922 PFL_4613PFL_4612PFL_4599PFL_4598PFL_4597PFL_4604PFL_4605PFL_4600PFL_4601PFL_4602
PENT384676 PSEEN1009PSEEN1010PSEEN1023PSEEN1024PSEEN1025PSEEN1018PSEEN1017PSEEN1022PSEEN1021PSEEN1020
PATL342610 PATL_1237PATL_1238PATL_3124PATL_3123PATL_3122PATL_3129PATL_3130PATL_3125PATL_3126PATL_3127
PAER208964 PA3815PA3814PA3801PA3800PA3799PA3806PA3807PA3802PA3803PA3804
PAER208963 PA14_14710PA14_14730PA14_14900PA14_14910PA14_14930PA14_14830PA14_14820PA14_14890PA14_14880PA14_14860
NEUT335283 NEUT_1243NEUT_2166NEUT_2165NEUT_2164NEUT_2171NEUT_2172NEUT_2167NEUT_2168NEUT_2169
NEUR228410 NE1452NE0151NE0152NE0153NE0145NE0144NE0150NE0148NE0147
MSUC221988 MS1727MS1726MS1921MS0734MS1916MS0668MS1920MS1919MS1918
MSP400668 MMWYL1_1343MMWYL1_1351MMWYL1_1358MMWYL1_1359MMWYL1_1360MMWYL1_1353MMWYL1_1352MMWYL1_1357MMWYL1_1356MMWYL1_1355
MPET420662 MPE_A2263MPE_A2262MPE_A1994MPE_A1993MPE_A1992MPE_A1999MPE_A2000MPE_A1995MPE_A1996MPE_A1997
MFLA265072 MFLA_0810MFLA_0808MFLA_1616MFLA_1615MFLA_1614MFLA_1623MFLA_1624MFLA_1619MFLA_1620MFLA_1621
MCAP243233 MCA_2883MCA_0247MCA_2890MCA_2891MCA_2892MCA_2887MCA_2886MCA_2889MCA_2483MCA_1363
MAQU351348 MAQU_1121MAQU_1122MAQU_1129MAQU_1130MAQU_1131MAQU_1124MAQU_1123MAQU_1128MAQU_1127MAQU_1126
LCHO395495 LCHO_1048LCHO_1360LCHO_2866LCHO_2865LCHO_2864LCHO_2871LCHO_2872LCHO_2867LCHO_2869
KPNE272620 GKPORF_B2197GKPORF_B2196GKPORF_B2176GKPORF_B2175GKPORF_B2174GKPORF_B2181GKPORF_B2182GKPORF_B2177GKPORF_B2178GKPORF_B2179
JSP375286 MMA_1251MMA_1252MMA_2125MMA_2124MMA_2123MMA_2130MMA_2131MMA_2126MMA_2127MMA_2128
ILOI283942 IL2041IL2040IL2032IL2031IL2030IL2037IL2038IL2033IL2034IL2035
HSOM228400 HSM_0153HSM_0154HSM_0731HSM_0290HSM_0364HSM_0712HSM_0730HSM_0729HSM_0728
HSOM205914 HS_0280HS_0281HS_0406HS_1325HS_1198HS_0387HS_0405HS_0404HS_0403
HINF71421 HI_0379HI_0378HI_0370HI_0136HI_0365HI_0876HI_0369HI_0368HI_0367
HINF374930 CGSHIEE_01110CGSHIEE_01115CGSHIEE_01155CGSHIEE_02605CGSHIEE_01185CGSHIEE_07650CGSHIEE_01160CGSHIEE_01170CGSHIEE_01175
HINF281310 NTHI0499NTHI0498NTHI0490NTHI0222NTHI0485NTHI1039NTHI0489NTHI0488NTHI0487
HHAL349124 HHAL_0217HHAL_1787HHAL_1786HHAL_0591HHAL_1791HHAL_1792HHAL_1788HHAL_0132HHAL_1789
HDUC233412 HD_1080HD_1082HD_1040HD_1183HD_0319HD_1053HD_1039HD_1037HD_1036
HCHE349521 HCH_04462HCH_04461HCH_04454HCH_04453HCH_04452HCH_04459HCH_04460HCH_04455HCH_04456HCH_04457
HARS204773 HEAR2240HEAR2239HEAR1266HEAR1267HEAR1268HEAR1261HEAR1260HEAR1265HEAR1264
ESP42895 ENT638_3028ENT638_3027ENT638_3007ENT638_3006ENT638_3005ENT638_3011ENT638_3012ENT638_3008ENT638_3009ENT638_3010
EFER585054 EFER_0641EFER_0642EFER_0659EFER_0660EFER_0661EFER_0655EFER_0654EFER_0658EFER_0657EFER_0656
ECOO157 Z3798YFHOZ3776Z3775Z3774YFGBNDKHISSGCPEYFGA
ECOL83334 ECS3397ECS3396ECS3375ECS3374ECS3373ECS3379ECS3380ECS3376ECS3377ECS3378
ECOL585397 ECED1_2962ECED1_2961ECED1_2944ECED1_2943ECED1_2942ECED1_2948ECED1_2949ECED1_2945ECED1_2946ECED1_2947
ECOL585057 ECIAI39_2732ECIAI39_2731ECIAI39_2714ECIAI39_2713ECIAI39_2712ECIAI39_2718ECIAI39_2719ECIAI39_2715ECIAI39_2716ECIAI39_2717
ECOL585056 ECUMN_2851ECUMN_2850ECUMN_2833ECUMN_2832ECUMN_2831ECUMN_2837ECUMN_2838ECUMN_2834ECUMN_2835ECUMN_2836
ECOL585055 EC55989_2816EC55989_2815EC55989_2798EC55989_2797EC55989_2796EC55989_2802EC55989_2803EC55989_2799EC55989_2800EC55989_2801
ECOL585035 ECS88_2707ECS88_2706ECS88_2689ECS88_2688ECS88_2687ECS88_2693ECS88_2694ECS88_2690ECS88_2691ECS88_2692
ECOL585034 ECIAI1_2583ECIAI1_2582ECIAI1_2565ECIAI1_2564ECIAI1_2563ECIAI1_2569ECIAI1_2570ECIAI1_2566ECIAI1_2567ECIAI1_2568
ECOL481805 ECOLC_1146ECOLC_1147ECOLC_1164ECOLC_1165ECOLC_1166ECOLC_1160ECOLC_1159ECOLC_1163ECOLC_1162ECOLC_1161
ECOL469008 ECBD_1153ECBD_1154ECBD_1173ECBD_1174ECBD_1175ECBD_1169ECBD_1168ECBD_1172ECBD_1171ECBD_1170
ECOL439855 ECSMS35_2684ECSMS35_2683ECSMS35_2665ECSMS35_2664ECSMS35_2663ECSMS35_2669ECSMS35_2670ECSMS35_2666ECSMS35_2667ECSMS35_2668
ECOL413997 ECB_02423ECB_02422ECB_02405ECB_02404ECB_02403ECB_02409ECB_02410ECB_02406ECB_02407ECB_02408
ECOL409438 ECSE_2817ECSE_2816ECSE_2799ECSE_2798ECSE_2797ECSE_2803ECSE_2804ECSE_2800ECSE_2801ECSE_2802
ECOL405955 APECO1_3994APECO1_3995APECO1_4011APECO1_4012APECO1_4013APECO1_4007APECO1_4006APECO1_4010APECO1_4009APECO1_4008
ECOL364106 UTI89_C2853UTI89_C2852UTI89_C2834UTI89_C2833UTI89_C2832UTI89_C2838UTI89_C2840UTI89_C2835UTI89_C2836UTI89_C2837
ECOL362663 ECP_2536ECP_2535ECP_2518ECP_2517ECP_2516ECP_2522ECP_2523ECP_2519ECP_2520ECP_2521
ECOL331111 ECE24377A_2816ECE24377A_2815ECE24377A_2797ECE24377A_2796ECE24377A_2795ECE24377A_2801ECE24377A_2802ECE24377A_2798ECE24377A_2799ECE24377A_2800
ECOL316407 ECK2528:JW2515:B2531ECK2527:JW2514:B2530ECK2509:JW2497:B2513ECK2508:JW2496:B2512ECK2507:JW5403:B2511ECK2513:JW2501:B2517ECK2514:JW2502:B2518ECK2510:JW2498:B2514ECK2511:JW2499:B2515ECK2512:JW2500:B2516
ECOL199310 C3057C3056C3035C3034C3033C3039C3041C3036C3037C3038
ECAR218491 ECA3238ECA3237ECA3218ECA3217ECA3216ECA3223ECA3224ECA3219ECA3220ECA3221
DARO159087 DARO_1948DARO_1950DARO_2983DARO_2982DARO_2981DARO_2988DARO_2989DARO_2984DARO_2985DARO_2986
CVIO243365 CV_1095CV_1094CV_3536CV_3535CV_3534CV_3541CV_3542CV_3537CV_3539
CSAL290398 CSAL_2847CSAL_2848CSAL_2856CSAL_2857CSAL_2858CSAL_2851CSAL_2850CSAL_2855CSAL_2854CSAL_2853
CPSY167879 CPS_1131CPS_1132CPS_4250CPS_4249CPS_4247CPS_4255CPS_4256CPS_4251CPS_4252CPS_4253
CJAP155077 CJA_1465CJA_1466CJA_1483CJA_1484CJA_1485CJA_1478CJA_1477CJA_1482CJA_1481CJA_1480
BVIE269482 BCEP1808_2206BCEP1808_2205BCEP1808_1737BCEP1808_1736BCEP1808_1735BCEP1808_1741BCEP1808_1742BCEP1808_1738BCEP1808_1740
BSP36773 BCEP18194_A5433BCEP18194_B2412BCEP18194_A5111BCEP18194_A5110BCEP18194_A5109BCEP18194_A5115BCEP18194_A5116BCEP18194_A5112BCEP18194_A5114
BCEN331272 BCEN2424_2127BCEN2424_2126BCEN2424_1810BCEN2424_1809BCEN2424_1808BCEN2424_1814BCEN2424_1815BCEN2424_1811BCEN2424_1813
BCEN331271 BCEN_5950BCEN_5951BCEN_6269BCEN_6270BCEN_6271BCEN_6265BCEN_6264BCEN_6268BCEN_6266
BAMB398577 BAMMC406_2037BAMMC406_2036BAMMC406_1721BAMMC406_1720BAMMC406_1719BAMMC406_1725BAMMC406_1726BAMMC406_1722BAMMC406_1724
BAMB339670 BAMB_2164BAMB_2163BAMB_1748BAMB_1747BAMB_1746BAMB_1752BAMB_1753BAMB_1749BAMB_1751
ASP76114 EBA6404EBA6401EBA1259EBA1258EBA1256EBA1268EBB37EBA1260EBA1261EBA1262
ASP62977 ACIAD1405ACIAD1404ACIAD0563ACIAD0564ACIAD0565ACIAD0557ACIAD0556ACIAD0562ACIAD0561ACIAD0560
ASP62928 AZO2018AZO2016AZO0929AZO0930AZO0931AZO0924AZO0923AZO0928AZO0927AZO0926
ASAL382245 ASA_2613ASA_2612ASA_2597ASA_2596ASA_2595ASA_2602ASA_2603ASA_2598ASA_2599ASA_2600
APLE434271 APJL_0942APJL_0941APJL_1195APJL_0424APJL_1285APJL_0367APJL_1196APJL_1198APJL_1199
APLE416269 APL_0932APL_0931APL_1174APL_0403APL_1274APL_0351APL_1175APL_1176APL_1177
AHYD196024 AHA_1746AHA_1747AHA_1761AHA_1762AHA_1763AHA_1756AHA_1755AHA_1760AHA_1759AHA_1758
AFER243159 AFE_2368AFE_2367AFE_1155AFE_1154AFE_1153AFE_1160AFE_1161AFE_1156AFE_1157AFE_1158
AEHR187272 MLG_1887MLG_0624MLG_1253MLG_1254MLG_0596MLG_1249MLG_1248MLG_1252MLG_1251
ABOR393595 ABO_1873ABO_1872ABO_1858ABO_1857ABO_1856ABO_1863ABO_1864ABO_1859ABO_1860ABO_1861
AAVE397945 AAVE_2442AAVE_2443AAVE_1426AAVE_1427AAVE_1428AAVE_1421AAVE_1420AAVE_1425AAVE_1423


Organism features enriched in list (features available for 126 out of the 132 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0002661892
Disease:Bubonic_plague 0.000092766
Disease:Dysentery 0.000092766
Disease:Gastroenteritis 0.00002411013
Disease:Plant_rot 0.009906833
Disease:chronic_bronchitis 0.009906833
Endospores:No 0.000159729211
GC_Content_Range4:0-40 2.830e-188213
GC_Content_Range4:40-60 1.191e-1486224
GC_Content_Range7:30-40 7.033e-128166
GC_Content_Range7:40-50 0.001617737117
GC_Content_Range7:50-60 2.302e-1049107
Genome_Size_Range5:0-2 2.119e-144155
Genome_Size_Range5:2-4 3.190e-720197
Genome_Size_Range5:4-6 1.145e-1983184
Genome_Size_Range5:6-10 0.00120801947
Genome_Size_Range9:1-2 6.011e-114128
Genome_Size_Range9:2-3 0.000363013120
Genome_Size_Range9:3-4 0.0012834777
Genome_Size_Range9:4-5 1.178e-84396
Genome_Size_Range9:5-6 2.790e-84088
Genome_Size_Range9:6-8 0.00017141838
Gram_Stain:Gram_Neg 5.335e-22116333
Habitat:Multiple 0.000075956178
Habitat:Terrestrial 0.0038327131
Motility:No 4.262e-108151
Motility:Yes 9.394e-1291267
Oxygen_Req:Aerobic 0.002787928185
Oxygen_Req:Anaerobic 6.118e-84102
Oxygen_Req:Facultative 6.809e-1885201
Pathogenic_in:Human 0.009716756213
Pathogenic_in:No 0.002327136226
Shape:Coccus 1.352e-7282
Shape:Rod 1.681e-13109347
Shape:Spiral 0.0019427134
Temp._range:Mesophilic 0.0074574111473
Temp._range:Psychrophilic 0.003862469
Temp._range:Thermophilic 0.0015445135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 71
Effective number of orgs (counting one per cluster within 468 clusters): 66

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SSOL273057 ncbi Sulfolobus solfataricus P21
SMAR399550 ncbi Staphylothermus marinus F11
SARE391037 ncbi Salinispora arenicola CNS-2051
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
NSP35761 Nocardioides sp.1
MSYN262723 ncbi Mycoplasma synoviae 530
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
BTUR314724 ncbi Borrelia turicatae 91E1350
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K11
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7326   G7325   G7321   G7320   G7319   EG12401   EG10650   EG10453   EG10370   EG10015   
UURE95667
UURE95664
UPAR505682
TWHI218496 TW0559
TWHI203267 TW186
TVOL273116
TPEN368408
TPAL243276 TP_0446
TKOD69014
TDEN243275 TDE_1265
TACI273075
SSOL273057 SSO0230
SMAR399550 SMAR_0828
SARE391037 SARE_1304
SACI330779 SACI_0696
RSAL288705 RSAL33209_0641
PPEN278197 PEPE_1116
PISL384616
PHOR70601
PFUR186497 PF0931
PAST100379
PARS340102
PAER178306
PACN267747 PPA1506
PABY272844 PAB1489
NSP35761 NOCA_3202
MSYN262723
MSED399549
MPUL272635
MPNE272634
MPEN272633 MYPE9400
MMYC272632
MMOB267748
MMAZ192952 MM0109
MMAR444158 MMARC6_0670
MMAR426368 MMARC7_1297
MMAR402880 MMARC5_1390
MMAR368407 MEMAR_1914
MLAB410358 MLAB_0266
MKAN190192 MK1591
MJAN243232 MJ_1265
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MART243272
MAEO419665
LXYL281090 LXX12200
KRAD266940 KRAD_1429
IHOS453591 IGNI_0725
HWAL362976 HQ3060A
HBUT415426 HBUT_0549
CSUL444179
CMIC443906 CMM_2156
CMIC31964 CMS1849
CMET456442 MBOO_0356
CMAQ397948
CKOR374847
BTUR314724
BHER314723
BGAR290434
BBUR224326
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_1404
APER272557 APE2377
AAUR290340 AAUR_1546


Organism features enriched in list (features available for 65 out of the 71 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0006528292
Arrangment:Singles 0.000034047286
Endospores:No 8.609e-2057211
GC_Content_Range4:0-40 0.008991932213
GC_Content_Range4:60-100 0.00455948145
GC_Content_Range7:0-30 3.459e-81947
GC_Content_Range7:60-70 0.00050465134
Genome_Size_Range5:0-2 1.267e-1344155
Genome_Size_Range5:4-6 1.886e-74184
Genome_Size_Range9:0-1 1.464e-121827
Genome_Size_Range9:1-2 0.000240026128
Genome_Size_Range9:4-5 0.0004098296
Genome_Size_Range9:5-6 0.0010308288
Gram_Stain:Gram_Neg 2.731e-718333
Habitat:Aquatic 0.00811421791
Habitat:Multiple 2.722e-65178
Habitat:Specialized 0.00206531353
Motility:No 0.003307626151
Optimal_temp.:- 0.000793917257
Optimal_temp.:100 0.001329433
Optimal_temp.:85 0.000142144
Oxygen_Req:Anaerobic 0.000010925102
Pathogenic_in:Human 0.002774014213
Shape:Irregular_coccus 5.322e-91217
Shape:Rod 3.633e-1114347
Shape:Sphere 2.851e-121519
Temp._range:Hyperthermophilic 2.485e-101523
Temp._range:Mesophilic 0.000402042473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 7
Effective number of orgs (counting one per cluster within 468 clusters): 6

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
ERUM302409 ncbi Ehrlichia ruminantium Gardel 0.00042483407
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 23270 0.0012512129910
MFLA265072 ncbi Methylobacillus flagellatus KT 0.0053701150210
TDEN292415 ncbi Thiobacillus denitrificans ATCC 25259 0.0055152150610
MCAP243233 ncbi Methylococcus capsulatus Bath 0.0056264150910
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden 0.00904233376
ABOR393595 ncbi Alcanivorax borkumensis SK2 0.0095055159010


Names of the homologs of the genes in the group in each of these orgs
  G7326   G7325   G7321   G7320   G7319   EG12401   EG10650   EG10453   EG10370   EG10015   
ERUM302409 ERGA_CDS_04240ERGA_CDS_04250ERGA_CDS_05290ERGA_CDS_05310ERGA_CDS_08980ERGA_CDS_07280ERGA_CDS_04850
AFER243159 AFE_2368AFE_2367AFE_1155AFE_1154AFE_1153AFE_1160AFE_1161AFE_1156AFE_1157AFE_1158
MFLA265072 MFLA_0810MFLA_0808MFLA_1616MFLA_1615MFLA_1614MFLA_1623MFLA_1624MFLA_1619MFLA_1620MFLA_1621
TDEN292415 TBD_1163TBD_1164TBD_0596TBD_0597TBD_0598TBD_0591TBD_0590TBD_0595TBD_0594TBD_0593
MCAP243233 MCA_2883MCA_0247MCA_2890MCA_2891MCA_2892MCA_2887MCA_2886MCA_2889MCA_2483MCA_1363
ERUM254945 ERWE_CDS_04280ERWE_CDS_04310ERWE_CDS_05390ERWE_CDS_09080ERWE_CDS_07360ERWE_CDS_04950
ABOR393595 ABO_1873ABO_1872ABO_1858ABO_1857ABO_1856ABO_1863ABO_1864ABO_1859ABO_1860ABO_1861


Organism features enriched in list (features available for 7 out of the 7 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Pathogenic_in:Ruminant 0.000368223
Shape:Pleomorphic_coccus 0.000123822



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181260.6573
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951120.5987
AST-PWY (arginine degradation II (AST pathway))120850.5934
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911070.5668
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761020.5646
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81640.5470
GLYCOCAT-PWY (glycogen degradation I)2461200.5454
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251110.5179
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001280.5066
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50450.4974
GALACTITOLCAT-PWY (galactitol degradation)73560.4950
GLUCONSUPER-PWY (D-gluconate degradation)2291070.4764
PWY-5386 (methylglyoxal degradation I)3051250.4744
PWY-5913 (TCA cycle variation IV)3011240.4734
PWY-1269 (CMP-KDO biosynthesis I)3251290.4729
PWY-5918 (heme biosynthesis I)2721170.4702
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901210.4690
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911210.4672
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491110.4671
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491110.4671
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961220.4663
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861190.4604
GLUTDEG-PWY (glutamate degradation II)194950.4572
PWY-5148 (acyl-CoA hydrolysis)2271040.4563
GLUCARDEG-PWY (D-glucarate degradation I)152820.4554
PWY-46 (putrescine biosynthesis III)138770.4518
PWY-4041 (γ-glutamyl cycle)2791160.4494
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149800.4460
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481290.4372
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183890.4332
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94590.4289
PWY-6196 (serine racemization)102620.4287
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391260.4273
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301000.4173
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))191890.4135
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212940.4069
LIPASYN-PWY (phospholipases)212940.4069
DAPLYSINESYN-PWY (lysine biosynthesis I)3421240.4068
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4016
PWY0-1182 (trehalose degradation II (trehalase))70470.4001



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7325   G7321   G7320   G7319   EG12401   EG10650   EG10453   EG10370   EG10015   
G73260.999920.9988050.9986010.9986040.9986190.9988490.9992520.9987470.998853
G73250.9988730.9985620.9986670.9987940.9989010.9991030.9988660.998958
G73210.999860.9997940.999720.999640.9998560.9996820.999741
G73200.9998960.9996750.9996120.9997840.9995890.999689
G73190.9995960.9996620.9997010.9994820.999636
EG124010.9997460.9996720.9996490.999774
EG106500.9995720.9993260.999652
EG104530.999740.99976
EG103700.999748
EG10015



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PAIRWISE BLAST SCORES:

  G7326   G7325   G7321   G7320   G7319   EG12401   EG10650   EG10453   EG10370   EG10015   
G73260.0f0---------
G7325-0.0f0--------
G7321--0.0f0-------
G7320---0.0f0------
G7319----0.0f0-----
EG12401-----0.0f0----
EG10650------0.0f0---
EG10453-------0.0f0--
EG10370--------0.0f0-
EG10015---------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10015 EG10370 EG10453 EG10650 EG12401 G7319 G7320 G7321 (centered at EG10370)
G7325 G7326 (centered at G7326)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7326   G7325   G7321   G7320   G7319   EG12401   EG10650   EG10453   EG10370   EG10015   
337/623326/623182/623237/623415/623408/623424/623403/623407/623163/623
AAEO224324:0:Tyes-435--1269214-01001-
AAUR290340:2:Tyes--------0-
AAVE397945:0:Tyes10061007678105-3
ABAC204669:0:Tyes10---10893412727945-
ABAU360910:0:Tyes01835834833839840836--
ABOR393595:0:Tyes171621078345
ABUT367737:0:Tyes2107551---0232904595-
ACAU438753:0:Tyes----362303443-3885-
ACEL351607:0:Tyes-----7880-774-
ACRY349163:8:Tyes---101959560263262261
ADEH290397:0:Tyes-0-10761074105110499233391-
AEHR187272:0:Tyes1281286526530648647651-650
AFER243159:0:Tyes1199119821078345
AFUL224325:0:Tyes-0-1195--570---
AHYD196024:0:Tyes01151617109141312
ALAI441768:0:Tyes-----0-567--
AMAR234826:0:Tyes10-93--353-52-
AMAR329726:9:Tyes31282480--5722-35434820-
AMET293826:0:Tyes9495--497419-0320-
ANAE240017:0:Tyes-----4--0-
AORE350688:0:Tyes268267--033-307121-
APER272557:0:Tyes------0---
APHA212042:0:Tyes-523-257--10330306-
APLE416269:0:Tyes583582822-529200823824825
APLE434271:0:Tno552551807-558970808810811
ASAL382245:5:Tyes171621067345
ASP1667:3:Tyes--------0-
ASP232721:2:Tyes935934678105--
ASP62928:0:Tyes1124112267810543
ASP62977:0:Tyes81881767810543
ASP76114:2:Tyes3039303721078345
AVAR240292:3:Tyes27014--2472-3004-0-
BABO262698:0:Tno0---------
BABO262698:1:Tno----3070599-1617-
BAMB339670:3:Tno430429210673-5
BAMB398577:3:Tno325324210673-5
BAMY326423:0:Tyes904---5420531908779-
BANT260799:0:Tno28582857--022821128632746-
BANT261594:2:Tno28552854--022551128602737-
BANT568206:2:Tyes39493948--24210241039543826-
BANT592021:2:Tno30223021--024131130272898-
BAPH198804:0:Tyes-300306-3050-21-
BAPH372461:0:Tyes-212218--0-1--
BBAC264462:0:Tyes-417-1203-02863343--
BBAC360095:0:Tyes-----7840---
BBRO257310:0:Tyes01893892891897898894--
BCAN483179:0:Tno0---------
BCAN483179:1:Tno----2940605-1676-
BCEN331271:0:Tno01330331332326325329-327
BCEN331272:3:Tyes319318210673-5
BCER226900:1:Tyes2824---023011128292708-
BCER288681:0:Tno27372736--022211127422625-
BCER315749:1:Tyes17851784--012031117941684-
BCER405917:1:Tyes26972696--021431127022576-
BCER572264:1:Tno29132912--023781129182793-
BCIC186490:0:Tyes-0-45-132-
BCLA66692:0:Tyes8---305-3190132-
BFRA272559:1:Tyes---252828510--3114-
BFRA295405:0:Tno---273630530--3345-
BHAL272558:0:Tyes89--39112594070150-
BHEN283166:0:Tyes-----0504---
BJAP224911:0:Fyes---5737354903615-417-
BLIC279010:0:Tyes10531052--61406031057864-
BLON206672:0:Tyes-----1391--0-
BMAL243160:1:Tno327326210673--
BMAL320388:1:Tno376375320784--
BMAL320389:1:Tyes378377320784--
BMEL224914:0:Tno0---------
BMEL224914:1:Tno----131116321016-0-
BMEL359391:1:Tno----2910583-1561-
BOVI236:0:Tyes0---------
BOVI236:1:Tyes----2760545-1464-
BPAR257311:0:Tno01784783782787788785--
BPER257313:0:Tyes01351350349355356352--
BPET94624:0:Tyes766765567104--
BPSE272560:1:Tyes773772567104--
BPSE320372:1:Tno325324320784--
BPSE320373:1:Tno395394210673--
BPUM315750:0:Tyes905904--5300519-750-
BQUI283165:0:Tyes----2580408---
BSP107806:2:Tyes-312318-3170-21-
BSP36773:1:Tyes-0--------
BSP36773:2:Tyes336-210673-5
BSP376:0:Tyes---3453-02924-274-
BSUB:0:Tyes12161215--73607251221966-
BSUI204722:0:Tyes0---------
BSUI204722:1:Tyes----2850590-1643-
BSUI470137:0:Tno91-------0-
BSUI470137:1:Tno----3150619---
BTHA271848:1:Tno01354355356350349353--
BTHE226186:0:Tyes----13451887--0-
BTHU281309:1:Tno27282727--022051127342617-
BTHU412694:1:Tno24992498--020281025042394-
BTRI382640:1:Tyes-----0720---
BVIE269482:7:Tyes469468210673-5
BWEI315730:4:Tyes27302729--021831127352619-
BXEN266265:1:Tyes-948-0------
CABO218497:0:Tyes------0-280-
CACE272562:1:Tyes0550--3651--121-
CAULO:0:Tyes1754--1542154301587-722-
CBEI290402:0:Tyes6400--3651-44099-
CBLO203907:0:Tyes-3--0-21--
CBLO291272:0:Tno-5--03412-
CBOT36826:1:Tno01370--13211305-18571224-
CBOT441770:0:Tyes01273--11631147-18411063-
CBOT441771:0:Tno01192--11321116-16991032-
CBOT441772:1:Tno01341--12921277-18111197-
CBOT498213:1:Tno01378--12601245-18871162-
CBOT508765:1:Tyes132133--167183-0231-
CBOT515621:2:Tyes01554--15061492-20621405-
CBOT536232:0:Tno01497--14481432-20621347-
CBUR227377:1:Tyes-0114-112118124115-116
CBUR360115:1:Tno-0105-103110116106-107
CBUR434922:2:Tno-098-9610310999-100
CCAV227941:1:Tyes------0-299-
CCHL340177:0:Tyes-----62401270146-
CCON360104:2:Tyes-----16200600316-
CCUR360105:0:Tyes-----015759631208-
CDES477974:0:Tyes1439778--1046-0776505-
CDIF272563:1:Tyes01--13731324-1482870-
CDIP257309:0:Tyes-------0139-
CEFF196164:0:Fyes-----151-0147-
CFEL264202:1:Tyes------309-0-
CFET360106:0:Tyes-----15360-730-
CGLU196627:0:Tyes-------0330-
CHOM360107:1:Tyes0----823587-105-
CHUT269798:0:Tyes0----28773395-1968-
CHYD246194:0:Tyes19301929--16551229019351513-
CJAP155077:0:Tyes011819201312171615
CJEI306537:0:Tyes-----131-0127-
CJEJ192222:0:Tyes-----13590-349-
CJEJ195099:0:Tno-----14560-394-
CJEJ354242:2:Tyes-----13000-335-
CJEJ360109:0:Tyes-----719281-0-
CJEJ407148:0:Tno-----13500-359-
CKLU431943:1:Tyes2300--269286-2029338-
CMET456442:0:Tyes-0--------
CMIC31964:2:Tyes--------0-
CMIC443906:2:Tyes--------0-
CMUR243161:1:Tyes------454-0-
CNOV386415:0:Tyes436435--406393-0293-
CPEL335992:0:Tyes222-----201-0-
CPER195102:1:Tyes9493--6348-2470-
CPER195103:0:Tno9291--6247-2340-
CPER289380:3:Tyes9291--6247-2310-
CPHY357809:0:Tyes12582332--18171915-02047-
CPNE115711:1:Tyes------0-252-
CPNE115713:0:Tno------249-0-
CPNE138677:0:Tno------252-0-
CPNE182082:0:Tno------265-0-
CPRO264201:0:Fyes-----333017380-
CPSY167879:0:Tyes0130273026302430323033302830293030
CRUT413404:0:Tyes187186--278102763-
CSAL290398:0:Tyes019101143876
CSP501479:7:Fyes-----0----
CSP501479:8:Fyes734--02-415-872-
CSP78:2:Tyes2408--2319232002360-770-
CTEP194439:0:Tyes-1733--152493217400--
CTET212717:0:Tyes01--80160--205-
CTRA471472:0:Tyes------456-0-
CTRA471473:0:Tno------456-0-
CVES412965:0:Tyes171170--253102513-
CVIO243365:0:Tyes10251025092508251525162511-2513
DARO159087:0:Tyes0210351034103310401041103610371038
DDES207559:0:Tyes6433119---2998144802230-
DETH243164:0:Tyes-235-9961342-3780354-
DGEO319795:1:Tyes0--1025-1341183---
DHAF138119:0:Tyes22672266--20912531022722377-
DNOD246195:0:Tyes--4560-3-2
DOLE96561:0:Tyes16041588--14741656197201399-
DPSY177439:2:Tyes-1712---141714300621-
DRAD243230:3:Tyes1681--1362-5492079-0-
DRED349161:0:Tyes655656--1048160206481854-
DSHI398580:5:Tyes472--152602167185-18-
DSP216389:0:Tyes1368--9401223-3670344-
DSP255470:0:Tno1453209-8721153-2790256-
DVUL882:1:Tyes0134---236317932824811-
ECAN269484:0:Tyes10-109--483301--
ECAR218491:0:Tyes222121078345
ECHA205920:0:Tyes119120-40-582---
ECOL199310:0:Tno242321068345
ECOL316407:0:Tno212021067345
ECOL331111:6:Tno212021067345
ECOL362663:0:Tno201921067345
ECOL364106:1:Tno212021068345
ECOL405955:2:Tyes191821067345
ECOL409438:6:Tyes201921067345
ECOL413997:0:Tno201921067345
ECOL439855:4:Tno212021067345
ECOL469008:0:Tno012021221615191817
ECOL481805:0:Tno011819201413171615
ECOL585034:0:Tno232221078356
ECOL585035:0:Tno232221078356
ECOL585055:0:Tno232221078356
ECOL585056:2:Tno232221067345
ECOL585057:0:Tno232221078356
ECOL585397:0:Tno232221078356
ECOL83334:0:Tno242321067345
ECOLI:0:Tno242321078356
ECOO157:0:Tno242321067345
EFAE226185:3:Tyes----0451-385--
EFER585054:1:Tyes012122231716201918
ELIT314225:0:Tyes2376--366013631579-1884-
ERUM254945:0:Tyes03-115--49331769-
ERUM302409:0:Tno01-109111-48731363-
ESP42895:1:Tyes232221067345
FALN326424:0:Tyes-----4--0-
FJOH376686:0:Tyes-2427-3610103206---
FMAG334413:1:Tyes0---237---113-
FNOD381764:0:Tyes1750----167901436923-
FNUC190304:0:Tyes11580--112468-240420-
FPHI484022:1:Tyes-108270170001340160576--
FRANT:0:Tno-108611111011719403070--
FSP106370:0:Tyes---0-1572--1568-
FSP1855:0:Tyes-----0--4-
FSUC59374:0:Tyes0-----1654-1545-
FTUL351581:0:Tno-2831157115805397891239--
FTUL393011:0:Tno-2651036103704967281110--
FTUL393115:0:Tyes-107411010911539293010--
FTUL401614:0:Tyes-9661265126617267001375--
FTUL418136:0:Tno-51411211153372713200--
FTUL458234:0:Tno-2811074107505237441151--
GBET391165:0:Tyes4611497-1848184901593159158-
GFOR411154:0:Tyes-94---0437---
GKAU235909:1:Tyes14111410--10670105514191312-
GMET269799:1:Tyes0121--1452181618171051478-
GOXY290633:5:Tyes1155--19221923218188001-
GSUL243231:0:Tyes1456896--111010546345-
GTHE420246:1:Tyes14401439--11030109214461345-
GURA351605:0:Tyes10--164085843851301-
GVIO251221:0:Tyes12253716--253113850-2951-
HACI382638:1:Tyes-1019----0-323-
HARS204773:0:Tyes9199186781054-
HAUR316274:2:Tyes0927-10846081357----
HBUT415426:0:Tyes------0---
HCHE349521:0:Tyes10921078345
HDUC233412:0:Tyes673674642-7620653641640639
HHAL349124:0:Tyes86-1668166746016721673166901670
HHEP235279:0:Tyes-0----116-248-
HINF281310:0:Tyes248247239-0234751238237236
HINF374930:0:Tyes019-258151137101213
HINF71421:0:Tno231230222-0217726221220219
HMAR272569:8:Tyes---2770--0---
HMOD498761:0:Tyes559561--6828330544963-
HMUK485914:1:Tyes---0--1955---
HNEP81032:0:Tyes---15115226621620-0-
HPY:0:Tno-21----0-434-
HPYL357544:1:Tyes-30----0-421-
HPYL85963:0:Tno-20----0-379-
HSAL478009:2:Tyes---0------
HSAL478009:4:Tyes------0---
HSOM205914:1:Tyes01128-1049922109127126125
HSOM228400:0:Tno01586-140213567585584583
HSP64091:1:Tno---0------
HSP64091:2:Tno------0---
HWAL362976:1:Tyes---0------
IHOS453591:0:Tyes------0---
ILOI283942:0:Tyes111021078345
JSP290400:1:Tyes2115--1946191601564-1679-
JSP375286:0:Tyes01888887886893894889890891
KPNE272620:2:Tyes232221078345
KRAD266940:2:Fyes--------0-
LACI272621:0:Tyes----31--0--
LBIF355278:2:Tyes------0-1136-
LBIF456481:2:Tno------0-1178-
LBOR355276:1:Tyes------0-1966-
LBOR355277:1:Tno------1906-0-
LBRE387344:2:Tyes----43--0--
LCAS321967:1:Tyes----0--145--
LCHO395495:0:Tyes0312184318421841184818491844-1846
LDEL321956:0:Tyes----0--32--
LDEL390333:0:Tyes----0--32--
LGAS324831:0:Tyes----34--0--
LHEL405566:0:Tyes----36--0--
LINN272626:1:Tno0---527-5195--
LINT189518:1:Tyes------1021-0-
LINT267671:1:Tno------2326-0-
LINT363253:3:Tyes-240---65310949590-
LJOH257314:0:Tyes----0--245--
LLAC272622:5:Tyes----5770-1921--
LLAC272623:0:Tyes----0--1212--
LMES203120:1:Tyes----0--18--
LMON169963:0:Tno74---523-515790-
LMON265669:0:Tyes7472--501-493790-
LPLA220668:0:Tyes----0--89-381
LPNE272624:0:Tno-204210673-4
LPNE297245:1:Fno-225567104-3
LPNE297246:1:Fyes-209210673-4
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