CANDIDATE ID: 160

CANDIDATE ID: 160

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9922139e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6720 (paaX) (b1399)
   Products of gene:
     - G6720-MONOMER (PaaX)
     - CPLX0-7731 (PaaX DNA binding transcriptional repressor)
       Regulatees:
        TU5 (paaABCDEFGHIJK)
        TU4 (paaZ)
     - CPLX0-7729 (PaaX-phenylacetyl-CoA)

- G6719 (paaK) (b1398)
   Products of gene:
     - G6719-MONOMER (phenylacetate-CoA ligase)
       Reactions:
        phenylacetate + ATP + coenzyme A  ->  phenylacetyl-CoA + diphosphate + AMP + H+
         In pathways
         BENZCOA-PWY (BENZCOA-PWY)
         PWY-6071 (superpathway of phenylethylamine degradation)
         PWY-1341 (PWY-1341)
         PWY0-321 (phenylacetate degradation I (aerobic))

- G6717 (paaI) (b1396)
   Products of gene:
     - G6717-MONOMER (hydroxyphenylacetyl-CoA thioesterase)
     - CPLX0-3941 (hydroxyphenylacetyl-CoA thioesterase)
       Reactions:
        3,4-dihydroxyphenylacetyl-CoA + H2O  =  3,4-dihydroxyphenylacetate + coenzyme A + H+

- G6715 (paaG) (b1394)
   Products of gene:
     - G6715-MONOMER (predicted ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming))
       Reactions:
        ring 1,2-epoxy-phenylacetyl-CoA  =  oxepin-CoA
         In pathways
         PWY-6071 (superpathway of phenylethylamine degradation)
         PWY0-321 (phenylacetate degradation I (aerobic))

- G6713 (paaE) (b1392)
   Products of gene:
     - G6713-MONOMER (predicted ring 1,2-phenylacetyl-CoA epoxidase subunit)
     - CPLX0-1762 (predicted ring 1,2-phenylacetyl-CoA epoxidase)
       Reactions:
        phenylacetyl-CoA + NADPH + oxygen + H+  ->  ring 1,2-epoxy-phenylacetyl-CoA + NADP+ + H2O
         In pathways
         PWY-6071 (superpathway of phenylethylamine degradation)
         PWY0-321 (phenylacetate degradation I (aerobic))

- G6712 (paaD) (b1391)
   Products of gene:
     - G6712-MONOMER (phenylacetate degradation protein)

- G6711 (paaC) (b1390)
   Products of gene:
     - G6711-MONOMER (predicted ring 1,2-phenylacetyl-CoA epoxidase subunit)
     - CPLX0-1762 (predicted ring 1,2-phenylacetyl-CoA epoxidase)
       Reactions:
        phenylacetyl-CoA + NADPH + oxygen + H+  ->  ring 1,2-epoxy-phenylacetyl-CoA + NADP+ + H2O
         In pathways
         PWY-6071 (superpathway of phenylethylamine degradation)
         PWY0-321 (phenylacetate degradation I (aerobic))

- G6710 (paaB) (b1389)
   Products of gene:
     - G6710-MONOMER (predicted ring 1,2-phenylacetyl-CoA epoxidase subunit)
     - CPLX0-1762 (predicted ring 1,2-phenylacetyl-CoA epoxidase)
       Reactions:
        phenylacetyl-CoA + NADPH + oxygen + H+  ->  ring 1,2-epoxy-phenylacetyl-CoA + NADP+ + H2O
         In pathways
         PWY-6071 (superpathway of phenylethylamine degradation)
         PWY0-321 (phenylacetate degradation I (aerobic))

- G6709 (paaA) (b1388)
   Products of gene:
     - G6709-MONOMER (predicted ring 1,2-phenylacetyl-CoA epoxidase subunit)
     - CPLX0-1762 (predicted ring 1,2-phenylacetyl-CoA epoxidase)
       Reactions:
        phenylacetyl-CoA + NADPH + oxygen + H+  ->  ring 1,2-epoxy-phenylacetyl-CoA + NADP+ + H2O
         In pathways
         PWY-6071 (superpathway of phenylethylamine degradation)
         PWY0-321 (phenylacetate degradation I (aerobic))



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 71
Effective number of orgs (counting one per cluster within 468 clusters): 55

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XAUT78245 ncbi Xanthobacter autotrophicus Py29
VEIS391735 ncbi Verminephrobacter eiseniae EF01-28
STRO369723 ncbi Salinispora tropica CNB-4408
SSP644076 Silicibacter sp. TrichCH4B8
SSP292414 ncbi Ruegeria sp. TM10409
SPRO399741 ncbi Serratia proteamaculans 5689
SLAC55218 Ruegeria lacuscaerulensis9
SCO ncbi Streptomyces coelicolor A3(2)8
SAVE227882 ncbi Streptomyces avermitilis MA-46808
SARE391037 ncbi Salinispora arenicola CNS-2058
RSP101510 ncbi Rhodococcus jostii RHA19
RSOL267608 ncbi Ralstonia solanacearum GMI10008
RPOM246200 ncbi Ruegeria pomeroyi DSS-39
RPAL316058 ncbi Rhodopseudomonas palustris HaA28
RPAL316057 ncbi Rhodopseudomonas palustris BisB59
RPAL316056 ncbi Rhodopseudomonas palustris BisB189
RPAL316055 ncbi Rhodopseudomonas palustris BisA539
RPAL258594 ncbi Rhodopseudomonas palustris CGA0098
RMET266264 ncbi Ralstonia metallidurans CH348
REUT381666 ncbi Ralstonia eutropha H169
REUT264198 ncbi Ralstonia eutropha JMP1349
PPUT76869 ncbi Pseudomonas putida GB-19
PPUT351746 ncbi Pseudomonas putida F19
PPUT160488 ncbi Pseudomonas putida KT24409
PING357804 ncbi Psychromonas ingrahamii 379
PFLU220664 ncbi Pseudomonas fluorescens Pf-59
PENT384676 ncbi Pseudomonas entomophila L489
NHAM323097 ncbi Nitrobacter hamburgensis X148
NFAR247156 ncbi Nocardia farcinica IFM 101529
MSP400668 ncbi Marinomonas sp. MWYL19
MPET420662 ncbi Methylibium petroleiphilum PM18
MABS561007 ncbi Mycobacterium abscessus ATCC 199778
LCHO395495 ncbi Leptothrix cholodnii SP-68
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785789
JSP290400 ncbi Jannaschia sp. CCS18
EFER585054 ncbi Escherichia fergusonii ATCC 354699
ECOL585055 ncbi Escherichia coli 559899
ECOL585034 ncbi Escherichia coli IAI19
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL409438 ncbi Escherichia coli SE119
ECOL331111 ncbi Escherichia coli E24377A9
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
DSHI398580 ncbi Dinoroseobacter shibae DFL 129
DRAD243230 ncbi Deinococcus radiodurans R18
DARO159087 ncbi Dechloromonas aromatica RCB9
CSP501479 Citreicella sp. SE459
BVIE269482 ncbi Burkholderia vietnamiensis G48
BTHA271848 ncbi Burkholderia thailandensis E2648
BSP376 Bradyrhizobium sp.9
BSP36773 Burkholderia sp.8
BPSE320373 ncbi Burkholderia pseudomallei 6688
BPSE320372 ncbi Burkholderia pseudomallei 1710b8
BPSE272560 ncbi Burkholderia pseudomallei K962438
BPET94624 Bordetella petrii9
BPER257313 ncbi Bordetella pertussis Tohama I9
BPAR257311 ncbi Bordetella parapertussis 128229
BMAL320389 ncbi Burkholderia mallei NCTC 102478
BMAL320388 ncbi Burkholderia mallei SAVP18
BMAL243160 ncbi Burkholderia mallei ATCC 233448
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1109
BHAL272558 ncbi Bacillus halodurans C-1258
BCEN331272 ncbi Burkholderia cenocepacia HI24248
BCEN331271 ncbi Burkholderia cenocepacia AU 10548
BBRO257310 ncbi Bordetella bronchiseptica RB509
BAMB398577 ncbi Burkholderia ambifaria MC40-68
BAMB339670 ncbi Burkholderia ambifaria AMMD8
ASP76114 ncbi Aromatoleum aromaticum EbN19
ASP62928 ncbi Azoarcus sp. BH728
ACRY349163 ncbi Acidiphilium cryptum JF-59
ABAU360910 ncbi Bordetella avium 197N9
AAUR290340 ncbi Arthrobacter aurescens TC18


Names of the homologs of the genes in the group in each of these orgs
  G6720   G6719   G6717   G6715   G6713   G6712   G6711   G6710   G6709   
XAUT78245 XAUT_0895XAUT_0901XAUT_0902XAUT_0903XAUT_0900XAUT_0899XAUT_0898XAUT_0897XAUT_0896
VEIS391735 VEIS_3944VEIS_3943VEIS_3942VEIS_3949VEIS_3948VEIS_3947VEIS_3946VEIS_3945
STRO369723 STROP_0708STROP_1038STROP_0707STROP_4069STROP_4070STROP_4071STROP_4072STROP_4073
SSP644076 SCH4B_1283SCH4B_1282SCH4B_1281SCH4B_0636SCH4B_0635SCH4B_0634SCH4B_0633SCH4B_0632
SSP292414 TM1040_0436TM1040_0440TM1040_0439TM1040_0438TM1040_3728TM1040_3727TM1040_3726TM1040_3725TM1040_3724
SPRO399741 SPRO_3083SPRO_3082SPRO_3080SPRO_3078SPRO_3076SPRO_3075SPRO_3074SPRO_3073SPRO_3072
SLAC55218 SL1157_0354SL1157_0347SL1157_0348SL1157_0349SL1157_0343SL1157_0342SL1157_0341SL1157_0340SL1157_0339
SCO SCO7469SCO7470SCO5144SCO7475SCO7474SCO7473SCO7472SCO7471
SAVE227882 SAV1257SAV1986SAV3120SAV4350SAV4351SAV4352SAV4353SAV4354
SARE391037 SARE_0655SARE_2696SARE_0654SARE_4468SARE_4469SARE_4470SARE_4471SARE_4472
RSP101510 RHA1_RO01799RHA1_RO02854RHA1_RO02866RHA1_RO02860RHA1_RO02855RHA1_RO02856RHA1_RO02857RHA1_RO02858RHA1_RO02859
RSOL267608 RSC2875RSC2874RSC2873RSP0608RSP0607RSP0606RSP0605RSP0604
RPOM246200 SPO_0734SPO_0742SPO_0741SPO_0740SPO_0753SPO_0754SPO_0755SPO_0756SPO_0757
RPAL316058 RPB_3634RPB_3635RPB_3605RPB_3637RPB_3638RPB_3639RPB_3640RPB_3641
RPAL316057 RPD_1521RPD_1829RPD_1830RPD_1831RPD_1828RPD_1827RPD_1826RPD_1825RPD_1824
RPAL316056 RPC_0692RPC_0683RPC_0682RPC_0681RPC_0687RPC_0688RPC_0689RPC_0690RPC_0691
RPAL316055 RPE_0987RPE_0996RPE_0997RPE_0998RPE_0992RPE_0991RPE_0990RPE_0989RPE_0988
RPAL258594 RPA1723RPA1724RPA1758RPA3764RPA3765RPA3766RPA3767RPA3768
RMET266264 RMET_3165RMET_3164RMET_3163RMET_3373RMET_3372RMET_3371RMET_3370RMET_3369
REUT381666 H16_B1364H16_A3313H16_A3312H16_A3311H16_B1359H16_B1360H16_B1361H16_B1362H16_B1363
REUT264198 REUT_B3734REUT_B3741REUT_A3016REUT_A3015REUT_B3739REUT_B3738REUT_B3737REUT_A3207REUT_B3735
PPUT76869 PPUTGB1_2610PPUTGB1_2617PPUTGB1_2615PPUTGB1_2613PPUTGB1_2622PPUTGB1_2621PPUTGB1_2620PPUTGB1_2619PPUTGB1_2618
PPUT351746 PPUT_2473PPUT_2480PPUT_2478PPUT_2476PPUT_2485PPUT_2484PPUT_2483PPUT_2482PPUT_2481
PPUT160488 PP_3286PP_3279PP_3281PP_3283PP_3274PP_3275PP_3276PP_3277PP_3278
PING357804 PING_0661PING_0660PING_0658PING_0656PING_0654PING_0653PING_0652PING_0651PING_0650
PFLU220664 PFL_3128PFL_3132PFL_3131PFL_3130PFL_3137PFL_3136PFL_3135PFL_3134PFL_3133
PENT384676 PSEEN2789PSEEN2796PSEEN2794PSEEN2792PSEEN2802PSEEN2801PSEEN2800PSEEN2799PSEEN2798
NHAM323097 NHAM_0936NHAM_0937NHAM_0938NHAM_0932NHAM_0931NHAM_0930NHAM_0929NHAM_0928
NFAR247156 NFA12510NFA21660NFA21530NFA21600NFA21650NFA21640NFA21630NFA21620NFA21610
MSP400668 MMWYL1_3103MMWYL1_3096MMWYL1_3098MMWYL1_3100MMWYL1_3091MMWYL1_3092MMWYL1_3093MMWYL1_3094MMWYL1_3095
MPET420662 MPE_A0986MPE_A0985MPE_A0984MPE_A0991MPE_A0990MPE_A0989MPE_A0988MPE_A0987
MABS561007 MAB_0911MAB_0971MAB_0905MAB_0910MAB_0909MAB_0908MAB_0907MAB_0906
LCHO395495 LCHO_2403LCHO_2404LCHO_2405LCHO_3569LCHO_3571LCHO_3572LCHO_3573LCHO_3574
KPNE272620 GKPORF_B0463GKPORF_B0462GKPORF_B0460GKPORF_B0458GKPORF_B0456GKPORF_B0455GKPORF_B0454GKPORF_B0453GKPORF_B0452
JSP290400 JANN_0656JANN_0657JANN_2154JANN_0651JANN_0652JANN_0653JANN_0654JANN_0655
EFER585054 EFER_1597EFER_1598EFER_1600EFER_1602EFER_1604EFER_1605EFER_1606EFER_1607EFER_1608
ECOL585055 EC55989_1535EC55989_1534EC55989_1532EC55989_1530EC55989_1528EC55989_1527EC55989_1526EC55989_1525EC55989_1524
ECOL585034 ECIAI1_1399ECIAI1_1398ECIAI1_1396ECIAI1_1394ECIAI1_1392ECIAI1_1391ECIAI1_1390ECIAI1_1389ECIAI1_1388
ECOL481805 ECOLC_2256ECOLC_2257ECOLC_2259ECOLC_2261ECOLC_2263ECOLC_2264ECOLC_2265ECOLC_2266ECOLC_2267
ECOL409438 ECSE_1484ECSE_1483ECSE_1481ECSE_1479ECSE_1477ECSE_1476ECSE_1475ECSE_1474ECSE_1473
ECOL331111 ECE24377A_1585ECE24377A_1584ECE24377A_1581ECE24377A_1579ECE24377A_1577ECE24377A_1576ECE24377A_1575ECE24377A_1574ECE24377A_1573
ECOL316407 ECK1396:JW1394:B1399ECK1395:JW5218:B1398ECK1393:JW1391:B1396ECK1391:JW1389:B1394ECK1389:JW1387:B1392ECK1388:JW5217:B1391ECK1387:JW1385:B1390ECK1386:JW1384:B1389ECK1385:JW1383:B1388
DSHI398580 DSHI_3828DSHI_3824DSHI_3825DSHI_1753DSHI_3822DSHI_3821DSHI_3820DSHI_3819DSHI_3818
DRAD243230 DR_A0256DR_2321DR_2510DR_A0243DR_2383DR_2384DR_2385DR_2386
DARO159087 DARO_0386DARO_3366DARO_0373DARO_0371DARO_0381DARO_0380DARO_0379DARO_0378DARO_0377
CSP501479 CSE45_4587CSE45_4598CSE45_4599CSE45_4600CSE45_4593CSE45_4592CSE45_4591CSE45_4590CSE45_4589
BVIE269482 BCEP1808_0516BCEP1808_0517BCEP1808_0518BCEP1808_0308BCEP1808_0309BCEP1808_0310BCEP1808_0311BCEP1808_0312
BTHA271848 BTH_II1392BTH_I2903BTH_I2902BTH_I3101BTH_I3100BTH_I3099BTH_I3098BTH_I3097
BSP376 BRADO2518BRADO2524BRADO2525BRADO2571BRADO2523BRADO2522BRADO2521BRADO2520BRADO2519
BSP36773 BCEP18194_A3626BCEP18194_A3627BCEP18194_A3628BCEP18194_A3425BCEP18194_A3426BCEP18194_A3427BCEP18194_A3428BCEP18194_A3429
BPSE320373 BURPS668_3550BURPS668_3549BURPS668_3548BURPS668_3779BURPS668_3778BURPS668_3777BURPS668_3776BURPS668_3775
BPSE320372 BURPS1710B_A3852BURPS1710B_A3851BURPS1710B_A3850BURPS1710B_A0012BURPS1710B_A0011BURPS1710B_A0010BURPS1710B_A0009BURPS1710B_A0008
BPSE272560 BPSL3045BPSL3044BPSL3043BPSL3234BPSL3233BPSL3232BPSL3231BPSL3230
BPET94624 BPET1923BPET1935BPET1934BPET1933BPET1928BPET1927BPET1926BPET1925BPET1924
BPER257313 BP2685BP2675BP2676BP2677BP2680BP2681BP2682BP2683BP2684
BPAR257311 BPP1672BPP1681BPP1680BPP1679BPP1677BPP1676BPP1675BPP1674BPP1673
BMAL320389 BMA10247_A1905BMA10247_A1904BMA10247_A1903BMA10247_3533BMA10247_3534BMA10247_3535BMA10247_3536BMA10247_3538
BMAL320388 BMASAVP1_0638BMASAVP1_0637BMASAVP1_0636BMASAVP1_A3115BMASAVP1_A3114BMASAVP1_A3113BMASAVP1_A3112BMASAVP1_A3111
BMAL243160 BMA_A0539BMA_A0539.1BMA_A0541BMA_2577BMA_2576BMA_2575BMA_2574BMA_2573
BJAP224911 BLR2890BLR2897BLR2896BLR2943BLR2895BLR2894BLR2893BSR2892BLR2891
BHAL272558 BH0194BH0195BH2602BH0202BH1058BH0199BH0198BH0196
BCEN331272 BCEN2424_0539BCEN2424_0540BCEN2424_0541BCEN2424_0326BCEN2424_0327BCEN2424_0328BCEN2424_0329BCEN2424_0330
BCEN331271 BCEN_2566BCEN_2565BCEN_2564BCEN_2780BCEN_2779BCEN_2778BCEN_2777BCEN_2776
BBRO257310 BB3436BB3427BB3428BB3429BB3431BB3432BB3433BB3434BB3435
BAMB398577 BAMMC406_0469BAMMC406_0470BAMMC406_0471BAMMC406_0254BAMMC406_0255BAMMC406_0256BAMMC406_0257BAMMC406_0258
BAMB339670 BAMB_0444BAMB_0445BAMB_0446BAMB_0245BAMB_0246BAMB_0247BAMB_0248BAMB_0249
ASP76114 EBA5390EBA5727EBA3544EBA3542EBA5725EBA3551EBA5722EBA3548EBA5720
ASP62928 AZO0303AZO0302AZO0300AZO0308AZO0307AZO0306AZO0305AZO0304
ACRY349163 ACRY_0094ACRY_0477ACRY_0478ACRY_1715ACRY_2612ACRY_2611ACRY_2610ACRY_2609ACRY_2608
ABAU360910 BAV1379BAV1388BAV1387BAV1386BAV1384BAV1383BAV1382BAV1381BAV1380
AAUR290340 AAUR_4024AAUR_3244AAUR_3243AAUR_3222AAUR_3223AAUR_3224AAUR_3225AAUR_3226


Organism features enriched in list (features available for 65 out of the 71 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Glanders_and_pneumonia 0.001329433
Disease:Melioidosis 0.001329433
Endospores:No 0.000062810211
GC_Content_Range4:40-60 0.000430613224
GC_Content_Range4:60-100 1.447e-2352145
GC_Content_Range7:40-50 0.00081184117
GC_Content_Range7:60-70 6.627e-2249134
Genome_Size_Range5:2-4 2.995e-93197
Genome_Size_Range5:4-6 4.537e-942184
Genome_Size_Range5:6-10 4.536e-92047
Genome_Size_Range9:4-5 0.00275311996
Genome_Size_Range9:5-6 8.823e-62388
Genome_Size_Range9:6-8 1.892e-61538
Genome_Size_Range9:8-10 0.001215459
Gram_Stain:Gram_Neg 0.001469048333
Habitat:Host-associated 0.004775814206
Habitat:Multiple 0.004236329178
Habitat:Terrestrial 0.0031965931
Motility:Yes 0.002808240267
Optimal_temp.:30 0.0004351715
Oxygen_Req:Aerobic 0.003818630185
Oxygen_Req:Anaerobic 0.00002601102
Shape:Branched_filament 0.004749334
Shape:Rod 0.000012054347



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 379
Effective number of orgs (counting one per cluster within 468 clusters): 267

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317581
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329531
YPES386656 ncbi Yersinia pestis Pestoides F1
YPES377628 ncbi Yersinia pestis Nepal5161
YPES360102 ncbi Yersinia pestis Antiqua1
YPES349746 ncbi Yersinia pestis Angola1
YPES214092 ncbi Yersinia pestis CO921
YPES187410 ncbi Yersinia pestis KIM 101
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80811
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A1
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110181
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103311
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c1
XCAM487884 Xanthomonas campestris pv. paulliniae1
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80041
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339131
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3061
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VVUL216895 ncbi Vibrio vulnificus CMCP61
VVUL196600 ncbi Vibrio vulnificus YJ0161
VFIS312309 ncbi Vibrio fischeri ES1141
VCHO345073 ncbi Vibrio cholerae O3951
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169611
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.1
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT20
SSUI391296 ncbi Streptococcus suis 98HAH331
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSON300269 ncbi Shigella sonnei Ss0460
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SMAR399550 ncbi Staphylothermus marinus F10
SHIGELLA ncbi Shigella flexneri 2a str. 2457T0
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGLO343509 ncbi Sodalis glossinidius morsitans0
SFLE373384 ncbi Shigella flexneri 5 str. 84010
SFLE198214 ncbi Shigella flexneri 2a str. 3010
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4760
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B670
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91501
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT181
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty21
SELO269084 ncbi Synechococcus elongatus PCC 63011
SDYS300267 ncbi Shigella dysenteriae Sd1970
SDEG203122 ncbi Saccharophagus degradans 2-401
SBOY300268 ncbi Shigella boydii Sb2270
SBAL402882 ncbi Shewanella baltica OS1851
SBAL399599 ncbi Shewanella baltica OS1951
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PPRO298386 ncbi Photobacterium profundum SS91
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT31
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-41
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
OCAR504832 ncbi Oligotropha carboxidovorans OM51
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NMUL323848 ncbi Nitrosospira multiformis ATCC 251961
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C911
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT81
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE297245 ncbi Legionella pneumophila Lens1
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
ILOI283942 ncbi Idiomarina loihiensis L2TR0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE1
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL11
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GURA351605 ncbi Geobacter uraniireducens Rf41
GOXY290633 ncbi Gluconobacter oxydans 621H1
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP106370 ncbi Frankia sp. CcI31
FRANT ncbi Francisella tularensis tularensis SCHU S41
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293281
ESP42895 Enterobacter sp.0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5830
ECOO157 ncbi Escherichia coli O157:H7 EDL9331
ECOL83334 Escherichia coli O157:H71
ECOL585397 ncbi Escherichia coli ED1a1
ECOL585057 ncbi Escherichia coli IAI391
ECOL585056 ncbi Escherichia coli UMN0260
ECOL585035 ncbi Escherichia coli S881
ECOL469008 ncbi Escherichia coli BL21(DE3)0
ECOL439855 ncbi Escherichia coli SMS-3-51
ECOL413997 ncbi Escherichia coli B str. REL6060
ECOL405955 ncbi Escherichia coli APEC O11
ECOL364106 ncbi Escherichia coli UTI891
ECOL362663 ncbi Escherichia coli 5361
ECOL199310 ncbi Escherichia coli CFT0731
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10431
ECAN269484 ncbi Ehrlichia canis Jake0
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30431
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJAP155077 Cellvibrio japonicus1
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BSUB ncbi Bacillus subtilis subtilis 1681
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse1
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BCLA66692 ncbi Bacillus clausii KSM-K161
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1021
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L1
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP11
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4491
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL031
APLE416269 ncbi Actinobacillus pleuropneumoniae L201
APHA212042 ncbi Anaplasma phagocytophilum HZ0
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-11
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK21
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G6720   G6719   G6717   G6715   G6713   G6712   G6711   G6710   G6709   
ZMOB264203
YPSE349747 YPSIP31758_2618
YPSE273123 YPTB1385
YPES386656 YPDSF_2338
YPES377628 YPN_2622
YPES360102 YPA_0648
YPES349746 YPANGOLA_A1590
YPES214092 YPO1359
YPES187410 Y2820
YENT393305 YE1509
XORY360094 XOOORF_5014
XORY342109 XOO0344
XORY291331 XOO0382
XFAS405440
XFAS183190
XFAS160492 XF1916
XCAM487884 XCC-B100_0322
XCAM316273 XCAORF_0293
XCAM314565 XC_4067
XCAM190485 XCC3977
XAXO190486 XAC4066
WPIP955
WPIP80849
VVUL216895 VV1_2865
VVUL196600 VV1405
VFIS312309 VFA0864
VCHO345073 VC0395_0315
VCHO VCA0924
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TSP28240
TSP1755 TETH514_1169
TPSE340099
TPET390874
TPEN368408 TPEN_0876
TPAL243276
TMAR243274
TLET416591
TKOD69014 TK1693
TERY203124 TERY_0916
TELO197221
TDEN326298 TMDEN_0849
TDEN243275
TCRU317025
TACI273075
STYP99287
SSUI391296 SSU98_1069
SSP84588
SSP64471
SSP387093 SUN_1633
SSP321332
SSP321327
SSP1148
SSP1131
SSON300269
SSAP342451
SRUB309807
SPYO370554 MGAS10750_SPY1195
SPYO370553 MGAS2096_SPY1100
SPYO370552 MGAS10270_SPY1153
SPYO370551 MGAS9429_SPY1139
SPYO319701 M28_SPY1077
SPYO293653 M5005_SPY1096
SPYO286636 M6_SPY1068
SPYO198466 SPYM3_1022
SPYO193567 SPS0838
SPYO186103 SPYM18_1357
SPYO160490 SPY1344
SMAR399550
SHIGELLA
SHAE279808
SGLO343509
SFLE373384
SFLE198214
SEPI176280
SEPI176279
SENT454169
SENT321314
SENT295319 SPA1863
SENT220341 STY0932
SENT209261 T1997
SELO269084 SYC2484_C
SDYS300267
SDEG203122 SDE_2886
SBOY300268
SBAL402882 SHEW185_1261
SBAL399599 SBAL195_1294
SAUR93062 SACOL0947
SAUR93061 SAOUHSC_00881
SAUR426430 NWMN_0814
SAUR418127 SAHV_0939
SAUR367830 SAUSA300_0847
SAUR359787 SAURJH1_0963
SAUR359786 SAURJH9_0944
SAUR282459 SAS0814
SAUR282458 SAR0906
SAUR273036 SAB0810
SAUR196620 MW0826
SAUR158879 SA0805
SAUR158878 SAV0944
SAGA211110 GBS1210
SAGA208435 SAG_1143
SAGA205921 SAK_1229
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199 GRAORF_3733
RAKA293614
PTOR263820 PTO0507
PSP312153
PPRO298386 PBPRB1895
PPEN278197
PMUL272843
PMOB403833
PMAR93060 P9215_15811
PMAR74547
PMAR74546 PMT9312_1450
PMAR59920
PMAR167555
PMAR167546 P9301ORF_1567
PMAR167542 P9515ORF_1581
PMAR167540
PMAR167539 PRO_1434
PMAR146891 A9601_15531
PLUT319225 PLUT_0066
PINT246198 PIN_A0717
PHOR70601 PH0311
PGIN242619 PG_1777
PFUR186497 PF0288
PCRY335284 PCRYO_0750
PAST100379
PARC259536 PSYC_1171
PACN267747 PPA1543
PABY272844 PAB1087
OTSU357244
OIHE221109 OB0682
OCAR504832 OCAR_4240
NWIN323098
NSP387092 NIS_1019
NSP103690 ALL4148
NSEN222891
NOCE323261 NOC_1971
NMUL323848 NMUL_A0291
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NEUT335283 NEUT_1097
NEUR228410 NE0796
MTHE187420 MTH1855
MSYN262723
MSTA339860 MSP_1009
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR444158 MMARC6_0169
MMAR426368 MMARC7_1742
MMAR402880 MMARC5_0861
MMAR267377 MMP0715
MLEP272631
MLAB410358 MLAB_1456
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MFLA265072 MFLA_0441
MCAP340047
MCAP243233
MART243272
MAQU351348 MAQU_3069
MAER449447 MAE_36530
MAEO419665
LXYL281090
LWEL386043 LWE2334
LSPH444177 BSPH_0389
LSAK314315
LREU557436
LPNE297245 LPL0641
LPLA220668 LP_1088
LMON265669 LMOF2365_2358
LMON169963 LMO2385
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253 LI0635
LINT267671
LINT189518
LINN272626 LIN2484
LHEL405566 LHV_0626
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481 LEPBI_I0897
LBIF355278 LBF_0865
LACI272621 LBA1753
KRAD266940
ILOI283942
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914 HMUK_0737
HMOD498761 HM1_2563
HINF71421
HINF374930 CGSHIEE_06235
HINF281310 NTHI1330
HHEP235279
HHAL349124 HHAL_0070
HDUC233412
HBUT415426 HBUT_1250
HAUR316274
HARS204773
HACI382638
GURA351605 GURA_2133
GOXY290633 GOX0094
FTUL458234 FTA_1406
FTUL418136 FTW_1431
FTUL401614 FTN_0753
FTUL393115 FTF0580
FTUL393011 FTH_1296
FTUL351581 FTL_1331
FSUC59374 FSU2653
FSP106370 FRANCCI3_2221
FRANT FT.0581
FNUC190304 FN0271
FNOD381764
FMAG334413 FMG_0215
ESP42895
ERUM302409
ERUM254945
EFAE226185
ECOO157 Z1106
ECOL83334 ECS0958
ECOL585397 ECED1_0839
ECOL585057 ECIAI39_0853
ECOL585056
ECOL585035 ECS88_0893
ECOL469008
ECOL439855 ECSMS35_0901
ECOL413997
ECOL405955 APECO1_1222
ECOL364106 UTI89_C0875
ECOL362663 ECP_0887
ECOL199310 C1005
ECHA205920
ECAR218491 ECA2663
ECAN269484
DNOD246195
DDES207559 DDE_2084
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439 CT_0112
CSUL444179
CSAL290398 CSAL_1005
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_3083
CPER289380 CPR_0756
CPER195103 CPF_0780
CPER195102 CPE0778
CPEL335992
CNOV386415 NT01CX_1532
CMUR243161
CMIC443906 CMM_1727
CMIC31964 CMS1971
CMAQ397948 CMAQ_0248
CKOR374847 KCR_0964
CKLU431943 CKL_0572
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJAP155077 CJA_3406
CHOM360107
CGLU196627
CFET360106
CFEL264202
CDIP257309 DIP0703
CDIF272563
CDES477974 DAUD_1574
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621 CLJ_0027
CBOT508765 CLL_A0661
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CBEI290402 CBEI_2899
CACE272562
CABO218497
BTUR314724
BTRI382640 BT_1181
BTHU412694 BALH_0970
BTHU281309 BT9727_1003
BSUB BSU18250
BSP107806
BQUI283165 BQ05990
BLON206672
BHER314723
BHEN283166 BH08600
BGAR290434
BCLA66692 ABC0350
BCIC186490
BCER572264 BCA_1143
BCER315749
BCER288681 BCE33L1006
BBUR224326
BBAC360095 BARBAKC583_0814
BBAC264462
BAPH372461
BAPH198804
BANT592021 BAA_1179
BANT568206 BAMEG_3485
BANT261594 GBAA1091
BANT260799 BAS1019
BAMY326423 RBAM_028210
BAFZ390236
AYEL322098
AVAR240292 AVA_0756
AURANTIMONAS
ASP62977 ACIAD1829
ASAL382245 ASA_3218
APLE434271 APJL_1575
APLE416269 APL_1547
APHA212042
AORE350688
AMET293826
AMAR329726
AMAR234826
ALAI441768
AFER243159
AEHR187272 MLG_0135
ABUT367737
ABOR393595 ABO_1717
AAEO224324


Organism features enriched in list (features available for 359 out of the 379 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00251661617
Arrangment:Pairs 0.001506882112
Arrangment:Singles 0.0027369191286
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00454691111
Disease:Wide_range_of_infections 0.00454691111
GC_Content_Range4:0-40 6.221e-27189213
GC_Content_Range4:60-100 8.517e-3527145
GC_Content_Range7:0-30 3.651e-114747
GC_Content_Range7:30-40 3.318e-15142166
GC_Content_Range7:60-70 1.280e-3323134
Genome_Size_Range5:0-2 4.817e-22142155
Genome_Size_Range5:4-6 2.356e-981184
Genome_Size_Range5:6-10 7.066e-13647
Genome_Size_Range9:0-1 1.395e-62727
Genome_Size_Range9:1-2 1.468e-15115128
Genome_Size_Range9:2-3 0.000224190120
Genome_Size_Range9:4-5 0.00054004596
Genome_Size_Range9:5-6 0.00001083688
Genome_Size_Range9:6-8 2.426e-10538
Genome_Size_Range9:8-10 0.002468019
Habitat:Host-associated 1.003e-9160206
Habitat:Multiple 0.001196194178
Habitat:Terrestrial 0.0001306931
Motility:Yes 0.0072237152267
Optimal_temp.:25-30 0.0053206619
Optimal_temp.:30 0.0009689315
Optimal_temp.:30-37 0.00161481718
Optimal_temp.:37 0.001563278106
Oxygen_Req:Aerobic 5.785e-690185
Oxygen_Req:Facultative 0.0042703137201
Pathogenic_in:Human 4.346e-8161213
Pathogenic_in:No 1.749e-7110226
Shape:Rod 0.0001055193347
Shape:Sphere 0.00103181819
Shape:Spiral 0.00036363034
Temp._range:Mesophilic 0.0093944301473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 3
Effective number of orgs (counting one per cluster within 468 clusters): 3

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
NFAR247156 ncbi Nocardia farcinica IFM 10152 0.001984511919
SACI330779 ncbi Sulfolobus acidocaldarius DSM 639 0.00571783616
SLAC55218 Ruegeria lacuscaerulensis 0.008821314059


Names of the homologs of the genes in the group in each of these orgs
  G6720   G6719   G6717   G6715   G6713   G6712   G6711   G6710   G6709   
NFAR247156 NFA12510NFA21660NFA21530NFA21600NFA21650NFA21640NFA21630NFA21620NFA21610
SACI330779 SACI_1775SACI_2290SACI_2289SACI_2286SACI_1583SACI_1771
SLAC55218 SL1157_0354SL1157_0347SL1157_0348SL1157_0349SL1157_0343SL1157_0342SL1157_0341SL1157_0340SL1157_0339


Organism features enriched in list (features available for 2 out of the 3 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Nocardiosis 0.003430511
Optimal_temp.:70-75 0.003430511



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ORGANISMS DEPLETED FOR GROUP:

Total number of orgs: 23
Effective number of orgs (counting one per cluster within 468 clusters): 8

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
ECOL405955 ncbi Escherichia coli APEC O1 0.001663037251
ESP42895 Enterobacter sp. 0.001379533450
SDYS300267 ncbi Shigella dysenteriae Sd197 0.000952233910
ECOL362663 ncbi Escherichia coli 536 0.000647738111
ECOL585397 ncbi Escherichia coli ED1a 0.000549138251
ECOL199310 ncbi Escherichia coli CFT073 0.000523538291
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B67 0.000443734800
ECOL585057 ncbi Escherichia coli IAI39 0.000340038641
ECOL585035 ncbi Escherichia coli S88 0.000299238741
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT2 0.000245435440
SHIGELLA ncbi Shigella flexneri 2a str. 2457T 0.000233935490
ECOL364106 ncbi Escherichia coli UTI89 0.000221238971
SFLE198214 ncbi Shigella flexneri 2a str. 301 0.000185235730
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL476 0.000183335740
ECOL439855 ncbi Escherichia coli SMS-3-5 0.000159339211
SBOY300268 ncbi Shigella boydii Sb227 0.000154735910
SFLE373384 ncbi Shigella flexneri 5 str. 8401 0.000153235920
ECOO157 ncbi Escherichia coli O157:H7 EDL933 0.000077739701
ECOL83334 Escherichia coli O157:H7 0.000065639811
SSON300269 ncbi Shigella sonnei Ss046 0.000037237220
ECOL469008 ncbi Escherichia coli BL21(DE3) 1.891e-639370
ECOL413997 ncbi Escherichia coli B str. REL606 1.656e-639450
ECOL585056 ncbi Escherichia coli UMN026 7.432e-739910


Organism features enriched in list (features available for 21 out of the 23 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 1.414e-715112
Disease:Dysentery 1.021e-966
Disease:Gastroenteritis 0.0084255313
Disease:Urinary_tract_infection 0.000156934
GC_Content_Range4:40-60 1.033e-921224
GC_Content_Range7:50-60 6.076e-1721107
Genome_Size_Range5:4-6 1.334e-1121184
Genome_Size_Range9:4-5 0.00010191196
Genome_Size_Range9:5-6 0.00027101088
Gram_Stain:Gram_Neg 5.901e-621333
Habitat:Host-associated 0.007559013206
Motility:Yes 0.000132118267
Optimal_temp.:37 0.001267310106
Oxygen_Req:Facultative 9.471e-1121201
Pathogenic_in:Human 0.000026317213
Pathogenic_in:No 0.00037451226
Shape:Rod 0.000014421347



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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-321 (phenylacetate degradation I (aerobic))155660.5648
PWY-5417 (catechol degradation III (ortho-cleavage pathway))50340.5262
PWY-5431 (aromatic compounds degradation via β-ketoadipate)48330.5215
PWY-2361 (3-oxoadipate degradation)82390.4431
PWY-6185 (4-methylcatechol degradation (ortho cleavage))107450.4394
P344-PWY (acrylonitrile degradation)210650.4388
CATECHOL-ORTHO-CLEAVAGE-PWY (catechol degradation to β-ketoadipate)103440.4387
PWY-5025 (IAA biosynthesis IV)92410.4345
GALACTARDEG-PWY (D-galactarate degradation I)151530.4219
ANAPHENOXI-PWY (phenylalanine degradation II (anaerobic))38240.4152
ALLANTOINDEG-PWY (superpathway of allantoin degradation in yeast)60310.4137
CYANCAT-PWY (cyanate degradation)94400.4133
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135490.4121
PWY-5419 (catechol degradation to 2-oxopent-4-enoate II)28200.4098
GALLATE-DEGRADATION-I-PWY (gallate degradation I)83370.4094
PWY-5697 (allantoin degradation to ureidoglycolate I (urea producing))92390.4060
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149510.4028



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6719   G6717   G6715   G6713   G6712   G6711   G6710   G6709   
G67200.9988250.9985660.9989660.9987050.9988240.9988950.9988240.999074
G67190.9995210.999310.9991650.999190.9993080.9991750.999332
G67170.99940.9990680.9991730.9991730.9991790.999167
G67150.9988420.9989840.9990390.9990180.999005
G67130.9996130.9996030.9995470.999519
G67120.9997140.9996210.999622
G67110.999670.999664
G67100.999669
G6709



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PAIRWISE BLAST SCORES:

  G6720   G6719   G6717   G6715   G6713   G6712   G6711   G6710   G6709   
G67200.0f0--------
G6719-0.0f0-------
G6717--0.0f0------
G6715---0.0f0-----
G6713----0.0f0----
G6712-----0.0f0---
G6711------0.0f0--
G6710-------0.0f0-
G6709--------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY0-321 (phenylacetate degradation I (aerobic)) (degree of match pw to cand: 0.600, degree of match cand to pw: 0.667, average score: 0.995)
  Genes in pathway or complex:
   *in cand* 0.9993 0.9988 G6719 (paaK) G6719-MONOMER (phenylacetate-CoA ligase)
             0.9862 0.9546 G6716 (paaH) G6716-MONOMER (3-hydroxyadipyl-CoA dehydrogenase (NAD+))
   *in cand* 0.9994 0.9988 G6710 (paaB) G6710-MONOMER (predicted ring 1,2-phenylacetyl-CoA epoxidase subunit)
   *in cand* 0.9995 0.9989 G6711 (paaC) G6711-MONOMER (predicted ring 1,2-phenylacetyl-CoA epoxidase subunit)
   *in cand* 0.9995 0.9990 G6709 (paaA) G6709-MONOMER (predicted ring 1,2-phenylacetyl-CoA epoxidase subunit)
   *in cand* 0.9993 0.9987 G6713 (paaE) G6713-MONOMER (predicted ring 1,2-phenylacetyl-CoA epoxidase subunit)
             0.9954 0.9896 G6714 (paaF) G6714-MONOMER (predicted 2,3-dehydroadipyl-CoA hydratase)
             0.9980 0.9962 G6718 (paaJ) G6718-MONOMER (β-ketoadipyl-CoA thiolase)
             0.9987 0.9979 G6708 (paaZ) G6708-MONOMER (oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase)
   *in cand* 0.9992 0.9988 G6715 (paaG) G6715-MONOMER (predicted ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming))
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9988 G6712 (paaD) G6712-MONOMER (phenylacetate degradation protein)
   *in cand* 0.9992 0.9986 G6717 (paaI) G6717-MONOMER (hydroxyphenylacetyl-CoA thioesterase)
   *in cand* 0.9990 0.9986 G6720 (paaX) G6720-MONOMER (PaaX)

- PWY-6071 (superpathway of phenylethylamine degradation) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.667, average score: 0.974)
  Genes in pathway or complex:
             0.9001 0.7683 G7961 (feaB) PHENDEHYD-MONOMER (FeaB)
             0.9585 0.9153 EG13139 (tynA) AMINEOXID-MONOMER (TynA)
   *in cand* 0.9992 0.9988 G6715 (paaG) G6715-MONOMER (predicted ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming))
             0.9987 0.9979 G6708 (paaZ) G6708-MONOMER (oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase)
             0.9980 0.9962 G6718 (paaJ) G6718-MONOMER (β-ketoadipyl-CoA thiolase)
             0.9954 0.9896 G6714 (paaF) G6714-MONOMER (predicted 2,3-dehydroadipyl-CoA hydratase)
   *in cand* 0.9994 0.9988 G6710 (paaB) G6710-MONOMER (predicted ring 1,2-phenylacetyl-CoA epoxidase subunit)
   *in cand* 0.9995 0.9989 G6711 (paaC) G6711-MONOMER (predicted ring 1,2-phenylacetyl-CoA epoxidase subunit)
   *in cand* 0.9995 0.9990 G6709 (paaA) G6709-MONOMER (predicted ring 1,2-phenylacetyl-CoA epoxidase subunit)
   *in cand* 0.9993 0.9987 G6713 (paaE) G6713-MONOMER (predicted ring 1,2-phenylacetyl-CoA epoxidase subunit)
             0.9862 0.9546 G6716 (paaH) G6716-MONOMER (3-hydroxyadipyl-CoA dehydrogenase (NAD+))
   *in cand* 0.9993 0.9988 G6719 (paaK) G6719-MONOMER (phenylacetate-CoA ligase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9988 G6712 (paaD) G6712-MONOMER (phenylacetate degradation protein)
   *in cand* 0.9992 0.9986 G6717 (paaI) G6717-MONOMER (hydroxyphenylacetyl-CoA thioesterase)
   *in cand* 0.9990 0.9986 G6720 (paaX) G6720-MONOMER (PaaX)

- CPLX0-1762 (predicted ring 1,2-phenylacetyl-CoA epoxidase) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.444, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9994 0.9988 G6710 (paaB) G6710-MONOMER (predicted ring 1,2-phenylacetyl-CoA epoxidase subunit)
   *in cand* 0.9995 0.9989 G6711 (paaC) G6711-MONOMER (predicted ring 1,2-phenylacetyl-CoA epoxidase subunit)
   *in cand* 0.9995 0.9990 G6709 (paaA) G6709-MONOMER (predicted ring 1,2-phenylacetyl-CoA epoxidase subunit)
   *in cand* 0.9993 0.9987 G6713 (paaE) G6713-MONOMER (predicted ring 1,2-phenylacetyl-CoA epoxidase subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9988 G6712 (paaD) G6712-MONOMER (phenylacetate degradation protein)
   *in cand* 0.9992 0.9988 G6715 (paaG) G6715-MONOMER (predicted ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming))
   *in cand* 0.9992 0.9986 G6717 (paaI) G6717-MONOMER (hydroxyphenylacetyl-CoA thioesterase)
   *in cand* 0.9993 0.9988 G6719 (paaK) G6719-MONOMER (phenylacetate-CoA ligase)
   *in cand* 0.9990 0.9986 G6720 (paaX) G6720-MONOMER (PaaX)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G6709 G6710 G6711 G6712 G6713 G6715 G6717 G6719 G6720 (centered at G6713)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6720   G6719   G6717   G6715   G6713   G6712   G6711   G6710   G6709   
54/623206/623207/623174/623225/623183/62387/62380/62392/623
AAUR290340:2:Tyes7932221-01234
AAVE397945:0:Tyes-020672361-----
ABAC204669:0:Tyes---01243379---
ABAU360910:0:Tyes098754321
ABOR393595:0:Tyes----0----
ACAU438753:0:Tyes-3702-02432527---
ACEL351607:0:Tyes--22139701234
ACRY349163:8:Tyes0382383162025262525252425232522
ADEH290397:0:Tyes-0---287---
AEHR187272:0:Tyes-0-------
AFUL224325:0:Tyes-170119510-----
AHYD196024:0:Tyes-154--0----
ANAE240017:0:Tyes--0--271---
APER272557:0:Tyes---0-521---
APLE416269:0:Tyes----0----
APLE434271:0:Tno----0----
ASAL382245:5:Tyes----0----
ASP1667:3:Tyes-3332-01234
ASP232721:2:Tyes-352-01734----
ASP62928:0:Tyes-32087654
ASP62977:0:Tyes---0-----
ASP76114:2:Tyes108612862012847128251280
AVAR240292:3:Tyes----0----
BABO262698:0:Tno---0-----
BABO262698:1:Tno--0-627137---
BAMB339670:3:Tno-20820921001234
BAMB398577:3:Tno-22122222301234
BAMY326423:0:Tyes----0----
BANT260799:0:Tno-0-------
BANT261594:2:Tno-0-------
BANT568206:2:Tyes-0-------
BANT592021:2:Tno-0-------
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