CANDIDATE ID: 162

CANDIDATE ID: 162

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9947053e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.1111111e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7433 (ygcO) (b2767)
   Products of gene:
     - G7433-MONOMER (predicted 4Fe-4S cluster-containing protein)

- G7432 (ygcN) (b2766)
   Products of gene:
     - G7432-MONOMER (predicted oxidoreductase with FAD/NAD(P)-binding domain)

- G6923 (ydiT) (b1700)
   Products of gene:
     - G6923-MONOMER (putative ferredoxin)

- G6922 (ydiS) (b1699)
   Products of gene:
     - G6922-MONOMER (putative flavoprotein)

- G6921 (ydiR) (b1698)
   Products of gene:
     - G6921-MONOMER (putative subunit of YdiQ-YdiR flavoprotein)

- G6920 (ydiQ) (b1697)
   Products of gene:
     - G6920-MONOMER (putative subunit of YdiQ-YdiR flavoprotein)

- EG11565 (fixX) (b0044)
   Products of gene:
     - EG11565-MONOMER (putative ferredoxin possibly involved in anaerobic carnitine metabolism)

- EG11564 (fixC) (b0043)
   Products of gene:
     - EG11564-MONOMER (flavoprotein (electron transport), possibly involved in anaerobic carnitine metabolism)

- EG11563 (fixB) (b0042)
   Products of gene:
     - EG11563-MONOMER (probable flavoprotein subunit required for anaerobic carnitine metabolism)



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 84
Effective number of orgs (counting one per cluster within 468 clusters): 58

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XAUT78245 ncbi Xanthobacter autotrophicus Py29
TVOL273116 ncbi Thermoplasma volcanium GSS19
TSP28240 Thermotoga sp.9
TROS309801 ncbi Thermomicrobium roseum DSM 51599
TPET390874 ncbi Thermotoga petrophila RKU-19
TMAR243274 ncbi Thermotoga maritima MSB89
TACI273075 ncbi Thermoplasma acidophilum DSM 17289
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen9
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT29
STOK273063 ncbi Sulfolobus tokodaii 79
SSON300269 ncbi Shigella sonnei Ss0469
SSOL273057 ncbi Sulfolobus solfataricus P29
SSED425104 ncbi Shewanella sediminis HAW-EB39
SPEA398579 ncbi Shewanella pealeana ATCC 7003459
SMEL266834 ncbi Sinorhizobium meliloti 10219
SMED366394 ncbi Sinorhizobium medicae WSM4199
SLOI323850 ncbi Shewanella loihica PV-49
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SHAL458817 ncbi Shewanella halifaxensis HAW-EB49
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB9
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4769
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B679
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91509
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT189
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty29
SDYS300267 ncbi Shigella dysenteriae Sd1979
SBOY300268 ncbi Shigella boydii Sb2278
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6399
RSP357808 ncbi Roseiflexus sp. RS-19
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111709
RPAL316058 ncbi Rhodopseudomonas palustris HaA29
RPAL316057 ncbi Rhodopseudomonas palustris BisB59
RPAL316056 ncbi Rhodopseudomonas palustris BisB189
RPAL316055 ncbi Rhodopseudomonas palustris BisA539
RPAL258594 ncbi Rhodopseudomonas palustris CGA0099
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38419
RCAS383372 ncbi Roseiflexus castenholzii DSM 139419
PTOR263820 ncbi Picrophilus torridus DSM 97909
PTHE370438 ncbi Pelotomaculum thermopropionicum SI9
PNAP365044 ncbi Polaromonas naphthalenivorans CJ29
PISL384616 ncbi Pyrobaculum islandicum DSM 41849
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135149
PAER178306 ncbi Pyrobaculum aerophilum IM29
MTHE264732 ncbi Moorella thermoacetica ATCC 390739
MSP409 Methylobacterium sp.9
MSED399549 ncbi Metallosphaera sedula DSM 53489
MLOT266835 ncbi Mesorhizobium loti MAFF3030998
LCHO395495 ncbi Leptothrix cholodnii SP-69
GURA351605 ncbi Geobacter uraniireducens Rf49
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255869
EFER585054 ncbi Escherichia fergusonii ATCC 354699
ECOO157 ncbi Escherichia coli O157:H7 EDL9339
ECOL83334 Escherichia coli O157:H79
ECOL585397 ncbi Escherichia coli ED1a9
ECOL585057 ncbi Escherichia coli IAI399
ECOL585056 ncbi Escherichia coli UMN0269
ECOL585055 ncbi Escherichia coli 559899
ECOL585035 ncbi Escherichia coli S889
ECOL585034 ncbi Escherichia coli IAI19
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL469008 ncbi Escherichia coli BL21(DE3)9
ECOL439855 ncbi Escherichia coli SMS-3-59
ECOL413997 ncbi Escherichia coli B str. REL6069
ECOL409438 ncbi Escherichia coli SE119
ECOL405955 ncbi Escherichia coli APEC O19
ECOL364106 ncbi Escherichia coli UTI899
ECOL362663 ncbi Escherichia coli 5369
ECOL331111 ncbi Escherichia coli E24377A9
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
ECOL199310 ncbi Escherichia coli CFT0739
DRED349161 ncbi Desulfotomaculum reducens MI-19
DHAF138119 ncbi Desulfitobacterium hafniense Y519
CMAQ397948 ncbi Caldivirga maquilingensis IC-1679
CKLU431943 ncbi Clostridium kluyveri DSM 5559
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29019
BXEN266265 ncbi Burkholderia xenovorans LB4009
BVIE269482 ncbi Burkholderia vietnamiensis G49
BSP376 Bradyrhizobium sp.9
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1109
APER272557 ncbi Aeropyrum pernix K18
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232709
ACAU438753 ncbi Azorhizobium caulinodans ORS 5719


Names of the homologs of the genes in the group in each of these orgs
  G7433   G7432   G6923   G6922   G6921   G6920   EG11565   EG11564   EG11563   
XAUT78245 XAUT_0139XAUT_0140XAUT_0139XAUT_0140XAUT_0141XAUT_0142XAUT_0139XAUT_0140XAUT_0141
TVOL273116 TVN1279TVN1278TVN1279TVN1278TVN1281TVN1280TVN1279TVN1278TVN1382
TSP28240 TRQ2_1196TRQ2_1195TRQ2_1196TRQ2_1195TRQ2_1194TRQ2_1193TRQ2_1196TRQ2_1195TRQ2_1194
TROS309801 TRD_A0378TRD_0044TRD_A0378TRD_0044TRD_0148TRD_0042TRD_A0378TRD_0044TRD_0148
TPET390874 TPET_1259TPET_1260TPET_1259TPET_1260TPET_1261TPET_1262TPET_1259TPET_1260TPET_1261
TMAR243274 TM_1533TM_1532TM_1533TM_1532TM_1531TM_1530TM_1533TM_1532TM_1531
TACI273075 TA0327TA0326TA0327TA0326TA0212TA0328TA0327TA0326TA0212
SWOL335541 SWOL_2123SWOL_2124SWOL_2123SWOL_2124SWOL_0266SWOL_0267SWOL_2123SWOL_2124SWOL_0266
STYP99287 STM1351STM1352STM1351STM1352STM1353STM1354STM0078STM0077STM0076
STOK273063 STS199ST1795STS199ST1795ST1776ST1793STS201ST1795ST1794
SSON300269 SSO_2920SSO_2919SSO_0052SSO_0051SSO_0050SSO_0049SSO_0052SSO_0051SSO_0050
SSOL273057 SSO11231SSO2776SSO11114SSO2776SSO2762SSO2763SSO11114SSO2776SSO2762
SSED425104 SSED_3233SSED_3232SSED_3233SSED_3232SSED_3231SSED_3230SSED_3233SSED_3232SSED_3231
SPEA398579 SPEA_4042SPEA_4041SPEA_4042SPEA_4041SPEA_4040SPEA_4039SPEA_4042SPEA_4041SPEA_4040
SMEL266834 SMA0816SMA0817SMA0816SMA0817SMA0819SMA0822SMA0816SMA0817SMA0819
SMED366394 SMED_6231SMED_6230SMED_6231SMED_6230SMED_6229SMED_6228SMED_6231SMED_6230SMED_6229
SLOI323850 SHEW_2680SHEW_2679SHEW_2680SHEW_2679SHEW_2678SHEW_2677SHEW_2680SHEW_2679SHEW_2678
SHIGELLA YGCOYGCNYDITYDISYDIRYDIQFIXXYDISYDIR
SHAL458817 SHAL_0216SHAL_0217SHAL_0216SHAL_0217SHAL_0218SHAL_0219SHAL_0216SHAL_0217SHAL_0218
SFUM335543 SFUM_3926SFUM_3927SFUM_3926SFUM_3927SFUM_3929SFUM_3930SFUM_3926SFUM_3927SFUM_3929
SFLE373384 SFV_2738SFV_2739SFV_1524SFV_1525SFV_1526SFV_1527SFV_0038SFV_0037SFV_1526
SFLE198214 AAN44272.1AAN44271.1AAN43120.1AAN43121.1AAN43122.1AAN43123.1AAN41707.1AAN41706.1AAN41705.1
SENT454169 SEHA_C0084SEHA_C0083SEHA_C0084SEHA_C1482SEHA_C1483SEHA_C1484SEHA_C0084SEHA_C0083SEHA_C0082
SENT321314 SCH_1370SCH_0072SCH_1370SCH_1371SCH_1372SCH_1373SCH_0073SCH_0072SCH_0071
SENT295319 SPA0079SPA0078SPA0079SPA0078SPA0077SPA0076SPA0079SPA0078SPA0077
SENT220341 STY0088STY0087STY0088STY0087STY0086STY0085STY0088STY0087STY0086
SENT209261 T0079T0078T0079T0078T0077T0076T0079T0078T0077
SDYS300267 SDY_2969SDY_2968SDY_1792SDY_1791SDY_0064SDY_0063SDY_0066SDY_0065SDY_0064
SBOY300268 SBO_2651SBO_2650SBO_1431SBO_1432SBO_1433SBO_1431SBO_1432SBO_1433
SACI330779 SACI_0317SACI_0292SACI_0317SACI_0292SACI_0291SACI_0290SACI_0317SACI_0292SACI_0291
RSP357808 ROSERS_0959ROSERS_0958ROSERS_0959ROSERS_0958ROSERS_0957ROSERS_2299ROSERS_0959ROSERS_0958ROSERS_2298
RRUB269796 RRU_A2264RRU_A2265RRU_A2264RRU_A2265RRU_A2266RRU_A3077RRU_A2264RRU_A2265RRU_A3078
RPAL316058 RPB_0987RPB_0986RPB_0987RPB_0986RPB_0985RPB_0984RPB_0987RPB_0986RPB_0985
RPAL316057 RPD_1091RPD_1090RPD_1091RPD_1090RPD_1089RPD_1088RPD_1091RPD_1090RPD_1089
RPAL316056 RPC_4445RPC_4446RPC_4445RPC_4446RPC_4447RPC_4448RPC_4445RPC_4446RPC_4447
RPAL316055 RPE_4515RPE_4516RPE_4515RPE_4516RPE_4517RPE_4518RPE_4515RPE_4516RPE_4517
RPAL258594 RPA4602RPA4603RPA4602RPA4603RPA4604RPA4605RPA4602RPA4603RPA4604
RLEG216596 PRL100197PRL100198PRL100197PRL100198PRL100199PRL100200PRL100197PRL100198PRL100199
RCAS383372 RCAS_3599RCAS_3598RCAS_3599RCAS_3598RCAS_3597RCAS_3166RCAS_3599RCAS_3598RCAS_3167
PTOR263820 PTO1385PTO1384PTO1385PTO0398PTO0282PTO1383PTO1385PTO0398PTO0282
PTHE370438 PTH_1765PTH_2430PTH_0019PTH_2430PTH_2431PTH_2432PTH_0019PTH_2430PTH_2431
PNAP365044 PNAP_2316PNAP_2315PNAP_2316PNAP_2315PNAP_2314PNAP_2313PNAP_2316PNAP_2315PNAP_2314
PISL384616 PISL_0647PISL_0648PISL_0647PISL_0648PISL_0755PISL_0756PISL_0647PISL_0648PISL_0755
PARS340102 PARS_2370PARS_2369PARS_2370PARS_2369PARS_2212PARS_2213PARS_2370PARS_2369PARS_2212
PAER178306 PAE0723PAE0725PAE0723PAE0725PAE3587PAE3586PAE0723PAE0725PAE3587
MTHE264732 MOTH_0061MOTH_0060MOTH_0061MOTH_0060MOTH_0059MOTH_0058MOTH_0061MOTH_0060MOTH_0059
MSP409 M446_3574M446_3575M446_3574M446_3575M446_3576M446_3577M446_3574M446_3575M446_2006
MSED399549 MSED_1250MSED_0333MSED_0334MSED_0333MSED_1248MSED_0331MSED_0334MSED_0333MSED_0332
MLOT266835 MSL5859MLL5860MSL5859MLL5860MLL5861MSL5859MLL5860MLL5861
LCHO395495 LCHO_1371LCHO_1370LCHO_1371LCHO_1370LCHO_0163LCHO_1368LCHO_1371LCHO_1370LCHO_1369
GURA351605 GURA_3555GURA_3556GURA_3555GURA_3556GURA_2415GURA_1601GURA_3555GURA_3556GURA_3037
FNUC190304 FN1545FN1544FN1545FN1544FN0785FN0784FN1545FN1544FN1533
EFER585054 EFER_0052EFER_0051EFER_0052EFER_0051EFER_0050EFER_0049EFER_0052EFER_0051EFER_0050
ECOO157 Z4077YGCNYDITYDISYDIRYDIQFIXXFIXCFIXB
ECOL83334 ECS3622ECS3621ECS2407ECS2406ECS2405ECS2404ECS0047ECS2406ECS0045
ECOL585397 ECED1_3216ECED1_3215ECED1_1902ECED1_1901ECED1_1900ECED1_1899ECED1_0043ECED1_1901ECED1_0041
ECOL585057 ECIAI39_2949ECIAI39_2948ECIAI39_1357ECIAI39_1358ECIAI39_1359ECIAI39_1360ECIAI39_0045ECIAI39_0044ECIAI39_0043
ECOL585056 ECUMN_3095ECUMN_3094ECUMN_1990ECUMN_1989ECUMN_1988ECUMN_1987ECUMN_0046ECUMN_1989ECUMN_0044
ECOL585055 EC55989_3041EC55989_3040EC55989_1868EC55989_1867EC55989_1866EC55989_1865EC55989_0044EC55989_0043EC55989_0042
ECOL585035 ECS88_3032ECS88_3031ECS88_1751ECS88_1750ECS88_1749ECS88_1748ECS88_0047ECS88_1750ECS88_0045
ECOL585034 ECIAI1_2872ECIAI1_2871ECIAI1_1754ECIAI1_1753ECIAI1_1752ECIAI1_1751ECIAI1_0046ECIAI1_1753ECIAI1_0044
ECOL481805 ECOLC_0945ECOLC_0946ECOLC_1931ECOLC_1932ECOLC_1933ECOLC_1934ECOLC_3611ECOLC_3612ECOLC_3613
ECOL469008 ECBD_0962ECBD_0963ECBD_1946ECBD_1947ECBD_1948ECBD_1949ECBD_3571ECBD_1947ECBD_3573
ECOL439855 ECSMS35_2896ECSMS35_2895ECSMS35_1495ECSMS35_1496ECSMS35_1497ECSMS35_1498ECSMS35_0046ECSMS35_0045ECSMS35_0044
ECOL413997 ECB_02612ECB_02611ECB_01669ECB_01668ECB_01667ECB_01666ECB_00048ECB_01668ECB_00046
ECOL409438 ECSE_3023ECSE_3022ECSE_1824ECSE_1823ECSE_1822ECSE_1821ECSE_0045ECSE_0044ECSE_0043
ECOL405955 APECO1_3765APECO1_3766APECO1_776APECO1_775APECO1_774APECO1_773APECO1_776APECO1_775APECO1_1939
ECOL364106 UTI89_C3131UTI89_C3130UTI89_C1893UTI89_C1892UTI89_C1891UTI89_C1890UTI89_C0050UTI89_C1892UTI89_C0048
ECOL362663 ECP_2741ECP_2740ECP_1647ECP_1646ECP_1645ECP_1644ECP_0044ECP_1646ECP_0042
ECOL331111 ECE24377A_3069ECE24377A_3068ECE24377A_1917ECE24377A_1916ECE24377A_1915ECE24377A_1914ECE24377A_0048ECE24377A_0047ECE24377A_0046
ECOL316407 ECK2762:JW2737:B2767ECK2761:JW2736:B2766ECK1698:JW1690:B1700ECK1697:JW1689:B1699ECK1696:JW1688:B1698ECK1695:JW5276:B1697ECK0045:JW0043:B0044ECK0044:JW0042:B0043ECK0043:JW0041:B0042
ECOL199310 C3326C3325C2096C2095C2094C2093C0054C2095C2094
DRED349161 DRED_0575DRED_0574DRED_0575DRED_0574DRED_0573DRED_0572DRED_0575DRED_0574DRED_0573
DHAF138119 DSY4295DSY4296DSY0945DSY4296DSY3797DSY0946DSY4295DSY0944DSY3797
CMAQ397948 CMAQ_0478CMAQ_0479CMAQ_0478CMAQ_0479CMAQ_0476CMAQ_0440CMAQ_0478CMAQ_0479CMAQ_0439
CKLU431943 CKL_1499CKL_1498CKL_1499CKL_1498CKL_0457CKL_3517CKL_1499CKL_1498CKL_3516
CHYD246194 CHY_2475CHY_2476CHY_2475CHY_2476CHY_1326CHY_1352CHY_2475CHY_2476CHY_2477
BXEN266265 BXE_B1433BXE_B1434BXE_B1433BXE_B1434BXE_C0251BXE_B1436BXE_B1433BXE_B1434BXE_B1435
BVIE269482 BCEP1808_5981BCEP1808_5982BCEP1808_5981BCEP1808_5982BCEP1808_0984BCEP1808_5984BCEP1808_5981BCEP1808_5982BCEP1808_4579
BSP376 BRADO5383BRADO5384BRADO5383BRADO5384BRADO5385BRADO5386BRADO5383BRADO5384BRADO6491
BJAP224911 BSR1775BLR1774BSR1775BLR1774BLR1773BLR2038BSR1775BLR1774BLR1773
APER272557 APE2460APE2421APE2421APE0135APE0134APE2460APE2421APE0135
AFER243159 AFE_1607AFE_1606AFE_1607AFE_1606AFE_1605AFE_1604AFE_1607AFE_1606AFE_1605
ACAU438753 AZC_3450AZC_3449AZC_3450AZC_3449AZC_3448AZC_3447AZC_3450AZC_3449AZC_3448


Organism features enriched in list (features available for 80 out of the 84 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 6.230e-6192
Arrangment:Pairs 0.000961726112
Disease:Dysentery 5.654e-666
Disease:Urinary_tract_infection 0.008674534
GC_Content_Range4:0-40 1.390e-97213
GC_Content_Range4:40-60 4.060e-853224
GC_Content_Range7:0-30 0.0058426147
GC_Content_Range7:30-40 7.408e-76166
GC_Content_Range7:50-60 8.749e-1239107
Genome_Size_Range5:0-2 0.00001797155
Genome_Size_Range5:2-4 0.000728515197
Genome_Size_Range5:4-6 1.213e-1051184
Genome_Size_Range9:1-2 0.00059827128
Genome_Size_Range9:3-4 0.0000692177
Genome_Size_Range9:4-5 0.00126882396
Genome_Size_Range9:5-6 8.730e-72888
Gram_Stain:Gram_Neg 0.000072361333
Gram_Stain:Gram_Pos 2.714e-74150
Habitat:Specialized 0.00058861653
Motility:No 0.001008710151
Motility:Yes 4.969e-757267
Optimal_temp.:25-30 0.0015726819
Optimal_temp.:80 0.002500633
Oxygen_Req:Aerobic 0.002403415185
Oxygen_Req:Facultative 8.996e-849201
Shape:Rod 0.000147862347
Temp._range:Hyperthermophilic 0.0014475923
Temp._range:Mesophilic 0.001679755473
Temp._range:Thermophilic 0.00309861135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 266
Effective number of orgs (counting one per cluster within 468 clusters): 197

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317580
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329530
YPES386656 ncbi Yersinia pestis Pestoides F0
YPES377628 ncbi Yersinia pestis Nepal5160
YPES360102 ncbi Yersinia pestis Antiqua0
YPES349746 ncbi Yersinia pestis Angola0
YPES214092 ncbi Yersinia pestis CO920
YPES187410 ncbi Yersinia pestis KIM 100
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80810
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VFIS312309 ncbi Vibrio fischeri ES1140
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP1148 ncbi Synechocystis sp. PCC 68030
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPRO399741 ncbi Serratia proteamaculans 5680
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PSP117 Pirellula sp.0
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO10
PINT246198 Prevotella intermedia 171
PING357804 ncbi Psychromonas ingrahamii 370
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma0
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR267377 ncbi Methanococcus maripaludis S21
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785780
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FMAG334413 ncbi Finegoldia magna ATCC 293280
ESP42895 Enterobacter sp.0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10430
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ABUT367737 ncbi Arcobacter butzleri RM40180
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7433   G7432   G6923   G6922   G6921   G6920   EG11565   EG11564   EG11563   
YPSE349747
YPSE273123
YPES386656
YPES377628
YPES360102
YPES349746
YPES214092
YPES187410
YENT393305
WSUC273121
WPIP955
WPIP80849
VFIS312309
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TSP1755
TPSE340099
TPEN368408 TPEN_1199
TPAL243276
TKOD69014 TK1088
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588 SYNW1756OR0620
SSP64471
SSP387093
SSP1148
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPRO399741
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SGLO343509
SEPI176280
SEPI176279
SELO269084
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SAGA211110
SAGA208435
SAGA205921
RXYL266117
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PSP117
PPEN278197
PMUL272843
PMAR93060
PMAR74547 PMT1246
PMAR74546
PMAR59920 PMN2A_1852
PMAR167555 NATL1_05771
PMAR167546
PMAR167540 PMM0520
PMAR167539 PRO_0520
PMAR146891
PLUM243265
PINT246198 PIN_A1178
PING357804
PFUR186497 PF0097
PDIS435591
PCAR338963
PAST100379
OTSU357244
NSP387092
NSP103690
NSEN222891
NOCE323261 NOC_0982
NMUL323848
NEUT335283
NEUR228410
MTHE187420 MTH1718
MSYN262723
MSUC221988
MSTA339860 MSP_0874
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR444158
MMAR426368 MMARC7_1386
MMAR402880
MMAR267377 MMP0388
MLAB410358 MLAB_0431
MJAN243232 MJ_0532
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MCAP243233
MART243272
MAER449447
MAEO419665
LXYL281090
LWEL386043
LSAK314315
LREU557436
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344 LVIS_1910
LACI272621
KPNE272620
IHOS453591
HWAL362976 HQ1520A
HSOM228400
HSOM205914
HPYL85963
HPYL357544
HPY
HINF71421
HINF374930
HINF281310
HHEP235279
HDUC233412
HBUT415426
HACI382638
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374 FSU1395
FRANT
FPHI484022
FMAG334413
ESP42895
ERUM302409
ERUM254945
EFAE226185
ECHA205920
ECAR218491
ECAN269484
DVUL882
DSP255470
DSP216389
DNOD246195
DETH243164
DDES207559
CVES412965
CTRA471473
CTRA471472
CSUL444179
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMUR243161
CMIC443906
CMIC31964
CMET456442
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CHOM360107
CFET360106
CFEL264202
CEFF196164 CE1328
CDIP257309 DIP1070
CDES477974
CCUR360105
CCON360104
CCAV227941
CBLO291272
CBLO203907
CABO218497
BTUR314724
BTHE226186 BT_1804
BSP107806
BLON206672
BHER314723
BGAR290434
BFRA295405 BF3372
BFRA272559 BF3202
BCIC186490
BCER226900 BC_4523
BBUR224326
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
APLE434271
APLE416269
APHA212042
AMAR329726
AMAR234826
ALAI441768 ACL_1108
AEHR187272
ABUT367737
AAEO224324


Organism features enriched in list (features available for 249 out of the 266 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00032895492
Arrangment:Clusters 0.00010521517
Disease:Bubonic_plague 0.005861966
Disease:Pharyngitis 0.001037288
Disease:Pneumonia 0.00053121112
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00007581111
Disease:Wide_range_of_infections 0.00007581111
Disease:bronchitis_and_pneumonitis 0.001037288
Disease:meningitis 0.002468777
Endospores:No 0.0003191109211
Endospores:Yes 2.349e-11253
GC_Content_Range4:0-40 1.334e-27153213
GC_Content_Range4:40-60 0.006366083224
GC_Content_Range4:60-100 3.310e-2512145
GC_Content_Range7:0-30 0.00047373147
GC_Content_Range7:30-40 1.438e-21122166
GC_Content_Range7:40-50 0.005963361117
GC_Content_Range7:50-60 7.898e-822107
GC_Content_Range7:60-70 2.603e-259134
Genome_Size_Range5:0-2 2.171e-43137155
Genome_Size_Range5:4-6 8.214e-2623184
Genome_Size_Range5:6-10 6.588e-7547
Genome_Size_Range9:0-1 4.515e-112727
Genome_Size_Range9:1-2 3.012e-30110128
Genome_Size_Range9:2-3 0.002614264120
Genome_Size_Range9:3-4 0.00053362077
Genome_Size_Range9:4-5 6.197e-101596
Genome_Size_Range9:5-6 9.439e-14888
Genome_Size_Range9:6-8 8.601e-6438
Gram_Stain:Gram_Neg 0.0001966122333
Gram_Stain:Gram_Pos 0.008615875150
Habitat:Host-associated 1.447e-9122206
Habitat:Specialized 0.00465271453
Habitat:Terrestrial 0.0000410331
Motility:No 1.455e-689151
Motility:Yes 3.494e-1568267
Optimal_temp.:30 0.0023913115
Optimal_temp.:30-37 4.026e-61718
Oxygen_Req:Aerobic 2.767e-1045185
Oxygen_Req:Facultative 0.0020287101201
Oxygen_Req:Microaerophilic 0.00765351318
Pathogenic_in:Human 1.168e-6118213
Pathogenic_in:No 0.000723679226
Pathogenic_in:Rodent 0.002468777
Shape:Coccus 5.902e-95982
Shape:Rod 5.595e-2095347
Shape:Sphere 1.745e-61819
Shape:Spiral 0.00050232434
Temp._range:Thermophilic 0.0065768835



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 28
Effective number of orgs (counting one per cluster within 468 clusters): 27

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
TVOL273116 ncbi Thermoplasma volcanium GSS1 8.601e-93059
PISL384616 ncbi Pyrobaculum islandicum DSM 4184 1.410e-83229
PTOR263820 ncbi Picrophilus torridus DSM 9790 1.492e-83249
TACI273075 ncbi Thermoplasma acidophilum DSM 1728 1.813e-83319
PAER178306 ncbi Pyrobaculum aerophilum IM2 2.937e-83499
STOK273063 ncbi Sulfolobus tokodaii 7 3.895e-83609
SACI330779 ncbi Sulfolobus acidocaldarius DSM 639 3.995e-83619
PARS340102 ncbi Pyrobaculum arsenaticum DSM 13514 3.995e-83619
MSED399549 ncbi Metallosphaera sedula DSM 5348 4.758e-83689
CMAQ397948 ncbi Caldivirga maquilingensis IC-167 4.877e-83699
SSOL273057 ncbi Sulfolobus solfataricus P2 1.216e-74089
APER272557 ncbi Aeropyrum pernix K1 9.191e-72988
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 25586 0.00006808209
TPET390874 ncbi Thermotoga petrophila RKU-1 0.00007938349
TMAR243274 ncbi Thermotoga maritima MSB8 0.00008558419
TSP28240 Thermotoga sp. 0.00011628709
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen 0.00030509689
PTHE370438 ncbi Pelotomaculum thermopropionicum SI 0.001139111209
CKLU431943 ncbi Clostridium kluyveri DSM 555 0.001195411269
TROS309801 ncbi Thermomicrobium roseum DSM 5159 0.001205011279
BXEN266265 ncbi Burkholderia xenovorans LB400 0.001254211329
RSP357808 ncbi Roseiflexus sp. RS-1 0.002876812419
RCAS383372 ncbi Roseiflexus castenholzii DSM 13941 0.002919012439
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-2901 0.003070812509
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 23270 0.004345312999
MTHE264732 ncbi Moorella thermoacetica ATCC 39073 0.005091313229
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB 0.006069913489
DRED349161 ncbi Desulfotomaculum reducens MI-1 0.007118113729


Names of the homologs of the genes in the group in each of these orgs
  G7433   G7432   G6923   G6922   G6921   G6920   EG11565   EG11564   EG11563   
TVOL273116 TVN1279TVN1278TVN1279TVN1278TVN1281TVN1280TVN1279TVN1278TVN1382
PISL384616 PISL_0647PISL_0648PISL_0647PISL_0648PISL_0755PISL_0756PISL_0647PISL_0648PISL_0755
PTOR263820 PTO1385PTO1384PTO1385PTO0398PTO0282PTO1383PTO1385PTO0398PTO0282
TACI273075 TA0327TA0326TA0327TA0326TA0212TA0328TA0327TA0326TA0212
PAER178306 PAE0723PAE0725PAE0723PAE0725PAE3587PAE3586PAE0723PAE0725PAE3587
STOK273063 STS199ST1795STS199ST1795ST1776ST1793STS201ST1795ST1794
SACI330779 SACI_0317SACI_0292SACI_0317SACI_0292SACI_0291SACI_0290SACI_0317SACI_0292SACI_0291
PARS340102 PARS_2370PARS_2369PARS_2370PARS_2369PARS_2212PARS_2213PARS_2370PARS_2369PARS_2212
MSED399549 MSED_1250MSED_0333MSED_0334MSED_0333MSED_1248MSED_0331MSED_0334MSED_0333MSED_0332
CMAQ397948 CMAQ_0478CMAQ_0479CMAQ_0478CMAQ_0479CMAQ_0476CMAQ_0440CMAQ_0478CMAQ_0479CMAQ_0439
SSOL273057 SSO11231SSO2776SSO11114SSO2776SSO2762SSO2763SSO11114SSO2776SSO2762
APER272557 APE2460APE2421APE2421APE0135APE0134APE2460APE2421APE0135
FNUC190304 FN1545FN1544FN1545FN1544FN0785FN0784FN1545FN1544FN1533
TPET390874 TPET_1259TPET_1260TPET_1259TPET_1260TPET_1261TPET_1262TPET_1259TPET_1260TPET_1261
TMAR243274 TM_1533TM_1532TM_1533TM_1532TM_1531TM_1530TM_1533TM_1532TM_1531
TSP28240 TRQ2_1196TRQ2_1195TRQ2_1196TRQ2_1195TRQ2_1194TRQ2_1193TRQ2_1196TRQ2_1195TRQ2_1194
SWOL335541 SWOL_2123SWOL_2124SWOL_2123SWOL_2124SWOL_0266SWOL_0267SWOL_2123SWOL_2124SWOL_0266
PTHE370438 PTH_1765PTH_2430PTH_0019PTH_2430PTH_2431PTH_2432PTH_0019PTH_2430PTH_2431
CKLU431943 CKL_1499CKL_1498CKL_1499CKL_1498CKL_0457CKL_3517CKL_1499CKL_1498CKL_3516
TROS309801 TRD_A0378TRD_0044TRD_A0378TRD_0044TRD_0148TRD_0042TRD_A0378TRD_0044TRD_0148
BXEN266265 BXE_B1433BXE_B1434BXE_B1433BXE_B1434BXE_C0251BXE_B1436BXE_B1433BXE_B1434BXE_B1435
RSP357808 ROSERS_0959ROSERS_0958ROSERS_0959ROSERS_0958ROSERS_0957ROSERS_2299ROSERS_0959ROSERS_0958ROSERS_2298
RCAS383372 RCAS_3599RCAS_3598RCAS_3599RCAS_3598RCAS_3597RCAS_3166RCAS_3599RCAS_3598RCAS_3167
CHYD246194 CHY_2475CHY_2476CHY_2475CHY_2476CHY_1326CHY_1352CHY_2475CHY_2476CHY_2477
AFER243159 AFE_1607AFE_1606AFE_1607AFE_1606AFE_1605AFE_1604AFE_1607AFE_1606AFE_1605
MTHE264732 MOTH_0061MOTH_0060MOTH_0061MOTH_0060MOTH_0059MOTH_0058MOTH_0061MOTH_0060MOTH_0059
SFUM335543 SFUM_3926SFUM_3927SFUM_3926SFUM_3927SFUM_3929SFUM_3930SFUM_3926SFUM_3927SFUM_3929
DRED349161 DRED_0575DRED_0574DRED_0575DRED_0574DRED_0573DRED_0572DRED_0575DRED_0574DRED_0573


Organism features enriched in list (features available for 27 out of the 28 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Endospores:No 0.000185719211
Genome_Size_Range5:2-4 0.009468515197
Genome_Size_Range9:2-3 0.000173614120
Habitat:Host-associated 0.00008701206
Habitat:Specialized 3.692e-91453
Optimal_temp.:- 0.00084184257
Optimal_temp.:100 0.005939723
Optimal_temp.:70 0.005939723
Optimal_temp.:80 0.000089033
Oxygen_Req:Anaerobic 0.000602612102
Pathogenic_in:Human 0.00043392213
Pathogenic_in:No 3.822e-622226
Temp._range:Hyperthermophilic 1.210e-7923
Temp._range:Mesophilic 1.209e-116473
Temp._range:Thermophilic 4.505e-81135



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ORGANISMS DEPLETED FOR GROUP:

Total number of orgs: 4
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
YENT393305 ncbi Yersinia enterocolitica enterocolitica 8081 0.009585930710
SPRO399741 ncbi Serratia proteamaculans 568 0.001797233110
ESP42895 Enterobacter sp. 0.001379533450
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 78578 0.000884034000


Organism features enriched in list (features available for 3 out of the 4 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Pneumonia_and_urinary_tract_infections 0.005145811



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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31250.4500
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45300.4345
P283-PWY (hydrogen oxidation I (aerobic))78390.4045



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7432   G6923   G6922   G6921   G6920   EG11565   EG11564   EG11563   
G74330.9995910.9995160.9994960.9991350.9989690.9995190.9994480.998974
G74320.9995070.9999580.9994620.9992070.9995150.999960.999401
G69230.9995790.999270.9992080.9995710.9995410.999105
G69220.9995220.9992670.9995490.9999610.999429
G69210.9999230.99920.9995240.999951
G69200.999110.9992890.999921
EG115650.9995870.999261
EG115640.999513
EG11563



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PAIRWISE BLAST SCORES:

  G7433   G7432   G6923   G6922   G6921   G6920   EG11565   EG11564   EG11563   
G74330.0f0-5.7e-16---1.7e-16--
G7432-0.0f0-2.9e-76---5.6e-73-
G69235.7e-16-0.0f0---9.5e-30--
G6922-1.4e-76-0.0f0---1.5e-125-
G6921----0.0f0---1.1e-67
G6920-----0.0f0---
EG115651.7e-16-9.5e-30---0.0f0--
EG11564-3.7e-76-1.3e-130---0.0f0-
EG11563----1.1e-67---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G6920 G6921 G6922 G6923 (centered at G6922)
G7432 G7433 (centered at G7433)
EG11563 EG11564 EG11565 (centered at EG11564)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7433   G7432   G6923   G6922   G6921   G6920   EG11565   EG11564   EG11563   
87/623251/62385/623245/623283/623274/62386/623274/623287/623
AAUR290340:2:Tyes----01--0
AAVE397945:0:Tyes-0-011431144-0-
ABAC204669:0:Tyes-2619-261932593256-26190
ABAU360910:0:Tyes-0-0215214-0215
ABOR393595:0:Tyes-0-021-02
ACAU438753:0:Tyes323210321
ACEL351607:0:Tyes----10--1
ACRY349163:8:Tyes---912-1-9120
ADEH290397:0:Tyes----0---0
AFER243159:0:Tyes323210321
AFUL224325:0:Tyes----10-1721
AHYD196024:0:Tyes-0-02--02
ALAI441768:0:Tyes-----0---
AMET293826:0:Tyes----03234--2590
ANAE240017:0:Tyes----01---
AORE350688:0:Tyes----7372--0
APER272557:0:Tyes24462407-240710244624071
ASAL382245:5:Tyes-0-02--02
ASP1667:3:Tyes----01--0
ASP232721:2:Tyes-0-0-1732-0836
ASP62928:0:Tyes-1318-4580--1318799
ASP62977:0:Tyes-555-55501-555-
ASP76114:2:Tyes-2529-0-2734-25292733
BABO262698:1:Tno-0-0-1269-0-
BAMB339670:1:Tno---0---0-
BAMB339670:3:Tno-416--10--1
BAMB398577:1:Tno---0---0-
BAMB398577:3:Tno-449--10--1
BAMY326423:0:Tyes----01--0
BANT260799:0:Tno----01--0
BANT261594:2:Tno----01--0
BANT568206:2:Tyes----01--0
BANT592021:2:Tno----01--0
BBAC264462:0:Tyes-853-85301-8530
BBAC360095:0:Tyes-0-0---0-
BBRO257310:0:Tyes-3124-312441800-31244180
BCAN483179:1:Tno-0-0-1335-0-
BCEN331271:2:Tno-984-98410-9841
BCEN331272:3:Tyes-398-39810-3981
BCER226900:1:Tyes-----0---
BCER288681:0:Tno----01--0
BCER315749:1:Tyes----13231324-01323
BCER405917:1:Tyes----01--0
BCER572264:1:Tno----01--0
BCLA66692:0:Tyes----01--0
BFRA272559:1:Tyes-----0---
BFRA295405:0:Tno-----0---
BHAL272558:0:Tyes----01--0
BHEN283166:0:Tyes-1-1---10
BJAP224911:0:Fyes21210265210
BLIC279010:0:Tyes----01--0
BMAL243160:1:Tno-613-61301-6130
BMAL320388:1:Tno-0-0972973-0972
BMAL320389:1:Tyes-709-70910-7091
BMEL224914:1:Tno-1263-1263-0-1263-
BMEL359391:1:Tno-0-0-1218-0-
BOVI236:1:Tyes-0-0-1141-0-
BPAR257311:0:Tno-143-14301-1430
BPER257313:0:Tyes-1295-129510-12951
BPET94624:0:Tyes-0-01142036-0114
BPSE272560:1:Tyes-0-0547548-0547
BPSE320372:1:Tno-0-010951096-01095
BPSE320373:1:Tno-0-011231124-01123
BPUM315750:0:Tyes----01--0
BQUI283165:0:Tyes-0-0---0-
BSP36773:0:Tyes-0-0-----
BSP36773:2:Tyes----10-4381
BSP376:0:Tyes010123011053
BSUB:0:Tyes----01--0
BSUI204722:1:Tyes-0-0-1307-0-
BSUI470137:1:Tno-0-0-1128-0-
BTHA271848:1:Tno-938-93810-9381
BTHE226186:0:Tyes-----0---
BTHU281309:1:Tno----01--0
BTHU412694:1:Tno----01--0
BTRI382640:1:Tyes-1-10--10
BVIE269482:5:Tyes0101-301-
BVIE269482:6:Tyes--------0
BVIE269482:7:Tyes----0----
BWEI315730:4:Tyes----01--0
BXEN266265:0:Tyes----0----
BXEN266265:1:Tyes3232-0321
CACE272562:1:Tyes----0186---
CAULO:0:Tyes-0-0---0-
CBEI290402:0:Tyes----8290--829
CBOT36826:1:Tno----02164--2247
CBOT441770:0:Tyes----02142--2226
CBOT441771:0:Tno----02003--2088
CBOT441772:1:Tno----01133--2279
CBOT498213:1:Tno----02201--2273
CBOT508765:1:Tyes----10--946
CBOT515621:2:Tyes----02370--2443
CBOT536232:0:Tno----02366--2451
CBUR227377:1:Tyes-0-0---0-
CBUR360115:1:Tno-0-0---0-
CBUR434922:2:Tno-0-0---0-
CCHL340177:0:Tyes-1344-13440--1344-
CDIF272563:1:Tyes----4170--1
CDIP257309:0:Tyes-----0---
CEFF196164:0:Fyes-----0---
CGLU196627:0:Tyes----0---0
CHUT269798:0:Tyes----268--0268
CHYD246194:0:Tyes1109111011091110025110911101111
CJAP155077:0:Tyes-0-0---0-
CJEI306537:0:Tyes-----1--0
CKLU431943:1:Tyes103010291030102903020103010293019
CKOR374847:0:Tyes----8030-1144803
CMAQ397948:0:Tyes3940394037139400
CNOV386415:0:Tyes----01656--1655
CPEL335992:0:Tyes-0-012-0-
CPER195102:1:Tyes----20362037--0
CPER195103:0:Tno----22062207--0
CPER289380:3:Tyes----19231924--0
CPHY357809:0:Tyes----10--1
CPSY167879:0:Tyes-0-0-1-0-
CSAL290398:0:Tyes-0--2--02
CSP501479:7:Fyes-0-0115--0115
CSP78:2:Tyes-1129-1129-0-1129-
CTEP194439:0:Tyes-----1--0
CTET212717:0:Tyes----12670--1576
CVIO243365:0:Tyes-99-9901-990
DARO159087:0:Tyes-0-01006--01006
DGEO319795:1:Tyes----10--1
DHAF138119:0:Tyes338933901339028892338902889
DOLE96561:0:Tyes----10--1
DPSY177439:2:Tyes----10--1
DRAD243230:3:Tyes----0---0
DRED349161:0:Tyes323210321
DSHI398580:5:Tyes-2899-28990--28990
ECOL199310:0:Tno319831971984198319821981019831982
ECOL316407:0:Tno272427231666166516641663210
ECOL331111:6:Tno289328921790178917881787210
ECOL362663:0:Tno269426931592159115901589215910
ECOL364106:1:Tno307630751841184018391838218400
ECOL405955:2:Tyes272227211577157615751574157715760
ECOL409438:6:Tyes303630351811181018091808210
ECOL413997:0:Tno258125801623162216211620216220
ECOL439855:4:Tno277227711402140314041405210
ECOL469008:0:Tno0198898999099125989892600
ECOL481805:0:Tno01989990991992267626772678
ECOL585034:0:Tno279927981701170016991698217000
ECOL585035:0:Tno288728861651165016491648216500
ECOL585055:0:Tno297829771822182118201819210
ECOL585056:2:Tno306930681956195519541953219550
ECOL585057:0:Tno290929081335133613371338210
ECOL585397:0:Tno308230811791179017891788217900
ECOL83334:0:Tno365936582412241124102409224110
ECOLI:0:Tno278327821696169516941693210
ECOO157:0:Tno367036692453245224512450210
EFER585054:1:Tyes323210321
ELIT314225:0:Tyes-0-013281329-0-
FALN326424:0:Tyes----47294730-04729
FJOH376686:0:Tyes----0---0
FNOD381764:0:Tyes----01--0
FNUC190304:0:Tyes121112111381138012110
FSP106370:0:Tyes----31163117-03116
FSP1855:0:Tyes----10-49431
FSUC59374:0:Tyes-----0---
GBET391165:0:Tyes-0-015531554-01553
GFOR411154:0:Tyes----0---0
GKAU235909:1:Tyes----01--0
GMET269799:1:Tyes----5500--448
GOXY290633:5:Tyes-0-02--02
GSUL243231:0:Tyes----076--0
GTHE420246:1:Tyes2-2-179514702-0
GURA351605:0:Tyes19421943194219438120194219431433
GVIO251221:0:Tyes-0-01--01
HARS204773:0:Tyes-1134-113410-11341
HAUR316274:2:Tyes----10--1
HCHE349521:0:Tyes-3-30--3-
HHAL349124:0:Tyes-0-0-3-02
HMAR272569:8:Tyes-0-027332734-02733
HMOD498761:0:Tyes----01552--0
HMUK485914:1:Tyes-1358-135801-13580
HNEP81032:0:Tyes-0-0-1535-0-
HSAL478009:4:Tyes-0--13451344--1345
HSP64091:2:Tno-0--13111310--1311
HWAL362976:1:Tyes-------0-
ILOI283942:0:Tyes-370-37010-3701
JSP290400:1:Tyes-0-0-62-061
JSP375286:0:Tyes-908-90810-9081
KRAD266940:2:Fyes----01--0
LBIF355278:2:Tyes----01--0
LBIF456481:2:Tno----01--0
LBOR355276:1:Tyes----01--0
LBOR355277:1:Tno----10--1
LBRE387344:2:Tyes-----0---
LCHO395495:0:Tyes121812171218121701215121812171216
LINT189518:1:Tyes----01--0
LINT267671:1:Tno----01--0
LPNE272624:0:Tno-352-3520--3520
LPNE297245:1:Fno-280-2800--2800
LPNE297246:1:Fyes-253-2530--2530
LPNE400673:0:Tno-0-01634--01634
LSPH444177:1:Tyes----01--0
MABS561007:1:Tyes----01--0
MACE188937:0:Tyes-0-0---0-
MAQU351348:2:Tyes-2--01-2-
MAVI243243:0:Tyes----01--0
MBAR269797:1:Tyes-0-0---0-
MBOV233413:0:Tno-0--25122513--2512
MBOV410289:0:Tno-0--24692470--2469
MBUR259564:0:Tyes70-0---60-
MEXT419610:0:Tyes-2696-26960--26960
MFLA265072:0:Tyes-0-0-2-03
MGIL350054:3:Tyes-997--01--0
MJAN243232:2:Tyes-------0-
MKAN190192:0:Tyes-0-0---0-
MLAB410358:0:Tyes-------0-
MLEP272631:0:Tyes----01--0
MLOT266835:2:Tyes01012-012
MMAG342108:0:Tyes---1208674675-12080
MMAR267377:0:Tyes-------0-
MMAR368407:0:Tyes---1224---0-
MMAR394221:0:Tyes-0-0-175-0-
MMAR426368:0:Tyes-------0-
MMAZ192952:0:Tyes-0-0---395-
MPET420662:1:Tyes-146-1460--146-
MSED399549:0:Tyes9042329020321
MSME246196:0:Tyes-0--12111210--1211
MSP164756:1:Tno----10--1
MSP164757:0:Tno----10--1
MSP189918:2:Tyes----10--1
MSP266779:3:Tyes-0-0-2136-02137
MSP400668:0:Tyes-0-0780923-0780
MSP409:2:Tyes150515061505150615071508150515060
MSTA339860:0:Tyes-------0-
MTBCDC:0:Tno-0--26672668--2667
MTBRV:0:Tno-0--24992500--2499
MTHE187420:0:Tyes-------0-
MTHE264732:0:Tyes323210321
MTHE349307:0:Tyes---0---0-
MTUB336982:0:Tno-0--24572458--2457
MTUB419947:0:Tyes-0--25862587--2586
MVAN350058:0:Tyes-0--10931092-10501093
MXAN246197:0:Tyes----0---0
NARO279238:0:Tyes-1337-1337-0-1337-
NFAR247156:2:Tyes----01--0
NGON242231:0:Tyes-0-0505504-0-
NHAM323097:2:Tyes-0-0-261-0-
NMEN122586:0:Tno-0-01513--0-
NMEN122587:0:Tyes-495-4950--4950
NMEN272831:0:Tno-0-01406--0-
NMEN374833:0:Tno-0-01570--0-
NOCE323261:1:Tyes-------0-
NPHA348780:2:Tyes----01--0
NSP35761:1:Tyes----11781177--0
NWIN323098:0:Tyes-1858-1858---18580
OANT439375:5:Tyes-0-0---0-
OCAR504832:0:Tyes-2209-220910-22091
OIHE221109:0:Tyes----01--0
PABY272844:0:Tyes---0---0-
PACN267747:0:Tyes-0-012-01
PAER178306:0:Tyes010121222121012122
PAER208963:0:Tyes-0-02--0-
PAER208964:0:Tno-2-20--2-
PARC259536:0:Tyes-0-0---0-
PARS340102:0:Tyes156155156155011561550
PATL342610:0:Tyes-2--0--20
PCRY335284:1:Tyes-0-0---0-
PENT384676:0:Tyes-2-20--20
PFLU205922:0:Tyes-2-20--2-
PFLU216595:1:Tyes-2-20--2-
PFLU220664:0:Tyes-0--2--0-
PFUR186497:0:Tyes---0-----
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