CANDIDATE ID: 165

CANDIDATE ID: 165

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9919414e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    8.8888889e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7682 (degQ) (b3234)
   Products of gene:
     - G7682-MONOMER (serine endoprotease, periplasmic)
       Reactions:
        a polypeptide[periplasmic space]  =  2 a polypeptide[periplasmic space]

- G7659 (mlaC) (b3192)
   Products of gene:
     - G7659-MONOMER (MlaC)
     - ABC-45-CPLX (phospholipid ABC transporter)

- G7657 (yrbA) (b3190)
   Products of gene:
     - G7657-MONOMER (predicted DNA-binding transcriptional regulator)

- EG12799 (mlaD) (b3193)
   Products of gene:
     - EG12799-MONOMER (MlaD)
     - ABC-45-CPLX (phospholipid ABC transporter)

- EG11652 (degS) (b3235)
   Products of gene:
     - EG11652-MONOMER (DegS serine endoprotease)

- EG10978 (sspB) (b3228)
   Products of gene:
     - EG10978-MONOMER (SspB)
     - CPLX0-2681 (ClpXP protease specificity-enhancing factor)

- EG10977 (sspA) (b3229)
   Products of gene:
     - EG10977-MONOMER (stringent starvation protein A)

- EG10908 (rpsI) (b3230)
   Products of gene:
     - EG10908-MONOMER (30S ribosomal subunit protein S9)
     - CPLX0-3953 (30S ribosomal subunit)
       Regulatees:
        TU00345 (rpsB-tsf)
     - CPLX0-3964 (ribosome)

- EG10874 (rplM) (b3231)
   Products of gene:
     - EG10874-MONOMER (50S ribosomal subunit protein L13)
     - CPLX0-3962 (50S ribosomal subunit)
     - CPLX0-3964 (ribosome)



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 161
Effective number of orgs (counting one per cluster within 468 clusters): 101

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317589
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329539
YPES386656 ncbi Yersinia pestis Pestoides F9
YPES377628 ncbi Yersinia pestis Nepal5169
YPES360102 ncbi Yersinia pestis Antiqua9
YPES349746 ncbi Yersinia pestis Angola9
YPES214092 ncbi Yersinia pestis CO929
YPES187410 ncbi Yersinia pestis KIM 109
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80819
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A8
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110188
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103318
XFAS405440 ncbi Xylella fastidiosa M128
XFAS183190 ncbi Xylella fastidiosa Temecula18
XFAS160492 ncbi Xylella fastidiosa 9a5c8
XCAM487884 Xanthomonas campestris pv. paulliniae8
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-108
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80048
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339138
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3068
VVUL216895 ncbi Vibrio vulnificus CMCP69
VVUL196600 ncbi Vibrio vulnificus YJ0169
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106339
VFIS312309 ncbi Vibrio fischeri ES1149
VEIS391735 ncbi Verminephrobacter eiseniae EF01-29
VCHO345073 ncbi Vibrio cholerae O3959
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169619
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252599
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT29
SSP94122 ncbi Shewanella sp. ANA-39
SSON300269 ncbi Shigella sonnei Ss0469
SSED425104 ncbi Shewanella sediminis HAW-EB39
SPRO399741 ncbi Serratia proteamaculans 5689
SPEA398579 ncbi Shewanella pealeana ATCC 7003459
SONE211586 ncbi Shewanella oneidensis MR-19
SLOI323850 ncbi Shewanella loihica PV-49
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SHAL458817 ncbi Shewanella halifaxensis HAW-EB49
SGLO343509 ncbi Sodalis glossinidius morsitans9
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4769
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B679
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91509
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT189
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty29
SDYS300267 ncbi Shigella dysenteriae Sd1979
SDEN318161 ncbi Shewanella denitrificans OS2179
SDEG203122 ncbi Saccharophagus degradans 2-408
SBOY300268 ncbi Shigella boydii Sb2279
SBAL402882 ncbi Shewanella baltica OS1859
SBAL399599 ncbi Shewanella baltica OS1959
RSOL267608 ncbi Ralstonia solanacearum GMI10009
RMET266264 ncbi Ralstonia metallidurans CH349
RFER338969 ncbi Rhodoferax ferrireducens T1189
REUT381666 ncbi Ralstonia eutropha H169
REUT264198 ncbi Ralstonia eutropha JMP1349
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30009
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a9
PSTU379731 ncbi Pseudomonas stutzeri A15018
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-19
PSP296591 ncbi Polaromonas sp. JS6669
PPUT76869 ncbi Pseudomonas putida GB-19
PPUT351746 ncbi Pseudomonas putida F19
PPUT160488 ncbi Pseudomonas putida KT24409
PPRO298386 ncbi Photobacterium profundum SS99
PNAP365044 ncbi Polaromonas naphthalenivorans CJ29
PMUL272843 ncbi Pasteurella multocida multocida Pm709
PMEN399739 ncbi Pseudomonas mendocina ymp8
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO19
PING357804 ncbi Psychromonas ingrahamii 379
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1259
PFLU220664 ncbi Pseudomonas fluorescens Pf-58
PFLU216595 ncbi Pseudomonas fluorescens SBW258
PFLU205922 ncbi Pseudomonas fluorescens Pf0-19
PENT384676 ncbi Pseudomonas entomophila L489
PATL342610 ncbi Pseudoalteromonas atlantica T6c9
PAER208964 ncbi Pseudomonas aeruginosa PAO19
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA149
NOCE323261 ncbi Nitrosococcus oceani ATCC 197079
NMUL323848 ncbi Nitrosospira multiformis ATCC 251969
NMEN122586 ncbi Neisseria meningitidis MC588
NEUT335283 ncbi Nitrosomonas eutropha C919
NEUR228410 ncbi Nitrosomonas europaea ATCC 197189
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E9
MSP400668 ncbi Marinomonas sp. MWYL18
MPET420662 ncbi Methylibium petroleiphilum PM19
MMAG342108 ncbi Magnetospirillum magneticum AMB-18
MFLA265072 ncbi Methylobacillus flagellatus KT9
MCAP243233 ncbi Methylococcus capsulatus Bath9
MAQU351348 ncbi Marinobacter aquaeolei VT88
LPNE400673 ncbi Legionella pneumophila Corby9
LPNE297246 ncbi Legionella pneumophila Paris9
LPNE297245 ncbi Legionella pneumophila Lens9
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 19
LCHO395495 ncbi Leptothrix cholodnii SP-69
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785789
JSP375286 ncbi Janthinobacterium sp. Marseille9
ILOI283942 ncbi Idiomarina loihiensis L2TR9
HSOM228400 ncbi Haemophilus somnus 23369
HSOM205914 ncbi Haemophilus somnus 129PT9
HINF71421 ncbi Haemophilus influenzae Rd KW209
HINF374930 ncbi Haemophilus influenzae PittEE9
HINF281310 ncbi Haemophilus influenzae 86-028NP9
HHAL349124 ncbi Halorhodospira halophila SL19
HDUC233412 ncbi Haemophilus ducreyi 35000HP9
HCHE349521 ncbi Hahella chejuensis KCTC 23968
HARS204773 ncbi Herminiimonas arsenicoxydans9
ESP42895 Enterobacter sp.9
EFER585054 ncbi Escherichia fergusonii ATCC 354699
ECOO157 ncbi Escherichia coli O157:H7 EDL9339
ECOL83334 Escherichia coli O157:H79
ECOL585397 ncbi Escherichia coli ED1a9
ECOL585057 ncbi Escherichia coli IAI399
ECOL585056 ncbi Escherichia coli UMN0269
ECOL585055 ncbi Escherichia coli 559899
ECOL585035 ncbi Escherichia coli S889
ECOL585034 ncbi Escherichia coli IAI19
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL469008 ncbi Escherichia coli BL21(DE3)9
ECOL439855 ncbi Escherichia coli SMS-3-59
ECOL413997 ncbi Escherichia coli B str. REL6069
ECOL409438 ncbi Escherichia coli SE119
ECOL405955 ncbi Escherichia coli APEC O19
ECOL364106 ncbi Escherichia coli UTI899
ECOL362663 ncbi Escherichia coli 5369
ECOL331111 ncbi Escherichia coli E24377A9
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
ECOL199310 ncbi Escherichia coli CFT0739
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10439
DARO159087 ncbi Dechloromonas aromatica RCB9
CSAL290398 ncbi Chromohalobacter salexigens DSM 30439
CPSY167879 ncbi Colwellia psychrerythraea 34H9
BVIE269482 ncbi Burkholderia vietnamiensis G49
BTHA271848 ncbi Burkholderia thailandensis E2649
BSP36773 Burkholderia sp.9
BPSE320373 ncbi Burkholderia pseudomallei 6689
BPSE320372 ncbi Burkholderia pseudomallei 1710b9
BPSE272560 ncbi Burkholderia pseudomallei K962439
BPET94624 Bordetella petrii9
BPER257313 ncbi Bordetella pertussis Tohama I9
BPAR257311 ncbi Bordetella parapertussis 128229
BMAL320389 ncbi Burkholderia mallei NCTC 102479
BMAL320388 ncbi Burkholderia mallei SAVP19
BMAL243160 ncbi Burkholderia mallei ATCC 233449
BCEN331272 ncbi Burkholderia cenocepacia HI24249
BCEN331271 ncbi Burkholderia cenocepacia AU 10549
BBRO257310 ncbi Bordetella bronchiseptica RB509
BAMB398577 ncbi Burkholderia ambifaria MC40-69
BAMB339670 ncbi Burkholderia ambifaria AMMD9
ASP76114 ncbi Aromatoleum aromaticum EbN19
ASP62977 ncbi Acinetobacter sp. ADP19
ASP62928 ncbi Azoarcus sp. BH729
ASP232721 ncbi Acidovorax sp. JS429
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4499
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL039
APLE416269 ncbi Actinobacillus pleuropneumoniae L209
AHYD196024 Aeromonas hydrophila dhakensis9
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-19
ABOR393595 ncbi Alcanivorax borkumensis SK28
ABAU360910 ncbi Bordetella avium 197N9


Names of the homologs of the genes in the group in each of these orgs
  G7682   G7659   G7657   EG12799   EG11652   EG10978   EG10977   EG10908   EG10874   
YPSE349747 YPSIP31758_0456YPSIP31758_0451YPSIP31758_0453YPSIP31758_0450YPSIP31758_0455YPSIP31758_0463YPSIP31758_0462YPSIP31758_0461YPSIP31758_0459
YPSE273123 YPTB3511YPTB3516YPTB3514YPTB3517YPTB3512YPTB3505YPTB3506YPTB3507YPTB3508
YPES386656 YPDSF_0331YPDSF_0325YPDSF_0327YPDSF_0324YPDSF_0329YPDSF_0337YPDSF_0336YPDSF_0335YPDSF_0334
YPES377628 YPN_3448YPN_3454YPN_3452YPN_3455YPN_3450YPN_3442YPN_3443YPN_3444YPN_3445
YPES360102 YPA_3737YPA_3731YPA_3733YPA_3730YPA_3735YPA_3743YPA_3742YPA_3741YPA_3740
YPES349746 YPANGOLA_A1137YPANGOLA_A1143YPANGOLA_A1141YPANGOLA_A1144YPANGOLA_A1139YPANGOLA_A1131YPANGOLA_A1132YPANGOLA_A1133YPANGOLA_A1134
YPES214092 YPO3566YPO3572YPO3570YPO3573YPO3568YPO3560YPO3561YPO3562YPO3563
YPES187410 Y0137Y0143Y0141Y0144Y0139Y0131Y0132Y0133Y0134
YENT393305 YE3744YE3749YE3747YE3750YE3745YE3738YE3739YE3740YE3741
XORY360094 XOOORF_0060XOOORF_5081XOOORF_5080XOOORF_0060XOOORF_1949XOOORF_1948XOOORF_0650XOOORF_0649
XORY342109 XOO0115XOO0278XOO0279XOO0115XOO2598XOO2599XOO3928XOO3929
XORY291331 XOO0059XOO0307XOO0308XOO0059XOO2758XOO2759XOO4152XOO4153
XFAS405440 XFASM12_0250XFASM12_1819XFASM12_1818XFASM12_0250XFASM12_1941XFASM12_1942XFASM12_0875XFASM12_0876
XFAS183190 PD_0231PD_1657PD_1656PD_0231PD_1773PD_1774PD_0751PD_0752
XFAS160492 XF0285XF0418XF0419XF0285XF0912XF0911XF1536XF1537
XCAM487884 XCC-B100_4087XCC-B100_4430XCC-B100_4429XCC-B100_4087XCC-B100_1852XCC-B100_1851XCC-B100_0507XCC-B100_0506
XCAM316273 XCAORF_0378XCAORF_4554XCAORF_4553XCAORF_0378XCAORF_2593XCAORF_2594XCAORF_4035XCAORF_4036
XCAM314565 XC_3986XC_4299XC_4298XC_3986XC_1796XC_1795XC_0491XC_0490
XCAM190485 XCC3898XCC4210XCC4209XCC3898XCC2320XCC2321XCC0477XCC0476
XAXO190486 XAC3980XAC4342XAC4341XAC3980XAC2453XAC2454XAC0488XAC0487
VVUL216895 VV1_0603VV1_0682VV1_0680VV1_0683VV1_0604VV1_0593VV1_0594VV1_0598VV1_0599
VVUL196600 VV0591VV0458VV0460VV0457VV0590VV0600VV0599VV0595VV0594
VPAR223926 VP0433VP2661VP2659VP2662VP0432VP0445VP0444VP0439VP0438
VFIS312309 VF2225VF0397VF0400VF0396VF2226VF2215VF2216VF2221VF2222
VEIS391735 VEIS_1784VEIS_2401VEIS_4454VEIS_2399VEIS_1784VEIS_3931VEIS_3932VEIS_2639VEIS_2638
VCHO345073 VC0395_A0100VC0395_A2099VC0395_A2097VC0395_A2100VC0395_A0099VC0395_A0109VC0395_A0108VC0395_A0104VC0395_A0103
VCHO VC0566VC2517VC2515VC2518VC0565VC0577VC0576VC0571VC0570
TDEN292415 TBD_1834TBD_1896TBD_1892TBD_1898TBD_1834TBD_1829TBD_1830TBD_0454TBD_0453
STYP99287 STM3348STM3310STM3308STM3311STM3349STM3341STM3342STM3344STM3345
SSP94122 SHEWANA3_0690SHEWANA3_0681SHEWANA3_0683SHEWANA3_0680SHEWANA3_0689SHEWANA3_0605SHEWANA3_0604SHEWANA3_0693SHEWANA3_0692
SSON300269 SSO_3375SSO_3340SSO_3338SSO_3341SSO_3376SSO_3369SSO_3370SSO_3371SSO_3372
SSED425104 SSED_0744SSED_0736SSED_0738SSED_0735SSED_0743SSED_0805SSED_0804SSED_0748SSED_0747
SPRO399741 SPRO_4352SPRO_4357SPRO_4355SPRO_4358SPRO_4353SPRO_4346SPRO_4347SPRO_4348SPRO_4349
SPEA398579 SPEA_3598SPEA_3606SPEA_3604SPEA_3607SPEA_3599SPEA_3532SPEA_3533SPEA_3594SPEA_3595
SONE211586 SO_3942SO_3951SO_3949SO_3952SO_3943SO_0612SO_0611SO_3939SO_3940
SLOI323850 SHEW_3296SHEW_3301SHEW_3299SHEW_3302SHEW_3297SHEW_0574SHEW_0573SHEW_3293SHEW_3294
SHIGELLA HTRAYRBCYRBAVPSCDEGSSSPBSSPARPSIRPLM
SHAL458817 SHAL_3686SHAL_3695SHAL_3693SHAL_3696SHAL_3687SHAL_3626SHAL_3627SHAL_3682SHAL_3683
SGLO343509 SG0213SG0208SG0210SG0207SG0212SG0219SG0218SG0217SG0216
SFLE373384 SFV_3261SFV_3222SFV_3220SFV_3223SFV_3262SFV_3255SFV_3256SFV_3257SFV_3258
SFLE198214 AAN44738.1AAN44698.1AAN44696.1AAN44699.1AAN44739.1AAN44732.1AAN44733.1AAN44734.1AAN44735.1
SENT454169 SEHA_C3646SEHA_C3607SEHA_C3605SEHA_C3608SEHA_C3647SEHA_C3639SEHA_C3640SEHA_C3642SEHA_C3643
SENT321314 SCH_3286SCH_3248SCH_3246SCH_3249SCH_3287SCH_3279SCH_3280SCH_3282SCH_3283
SENT295319 SPA3215SPA3177SPA3175SPA3178SPA3216SPA3209SPA3210SPA3211SPA3212
SENT220341 STY3528STY3489STY3487STY3490STY3529STY3522STY3523STY3524STY3525
SENT209261 T3264T3227T3225T3228T3265T3258T3259T3260T3261
SDYS300267 SDY_3410SDY_3373SDY_3371SDY_3374SDY_3411SDY_3404SDY_3405SDY_3406SDY_3407
SDEN318161 SDEN_0504SDEN_0499SDEN_0501SDEN_0498SDEN_0503SDEN_3197SDEN_3198SDEN_0507SDEN_0506
SDEG203122 SDE_3731SDE_3172SDE_3171SDE_3167SDE_3159SDE_3160SDE_3163SDE_3164
SBOY300268 SBO_3155SBO_3190SBO_3192SBO_3189SBO_3154SBO_3161SBO_3160SBO_3159SBO_3158
SBAL402882 SHEW185_0700SHEW185_0695SHEW185_0697SHEW185_0694SHEW185_0699SHEW185_3759SHEW185_3760SHEW185_0703SHEW185_0702
SBAL399599 SBAL195_0730SBAL195_0725SBAL195_0727SBAL195_0724SBAL195_0729SBAL195_3885SBAL195_3886SBAL195_0733SBAL195_0732
RSOL267608 RSC2932RSC2958RSC2954RSC2960RSC2932RSC2925RSC2926RSC0491RSC0490
RMET266264 RMET_3233RMET_3255RMET_3251RMET_3257RMET_3233RMET_3226RMET_3227RMET_0411RMET_0410
RFER338969 RFER_2959RFER_2063RFER_2943RFER_2937RFER_2959RFER_2968RFER_2967RFER_0722RFER_0721
REUT381666 H16_A3401H16_A3423H16_A3419H16_A3425H16_A3401H16_A3394H16_A3395H16_A0483H16_A0482
REUT264198 REUT_A3096REUT_A3118REUT_A3114REUT_A3120REUT_A3096REUT_A3089REUT_A3090REUT_A0469REUT_A0468
PSYR223283 PSPTO_4435PSPTO_4444PSPTO_4442PSPTO_4445PSPTO_4435PSPTO_4423PSPTO_4424PSPTO_4425PSPTO_4426
PSYR205918 PSYR_4130PSYR_4138PSYR_4136PSYR_4139PSYR_4130PSYR_4117PSYR_4118PSYR_4119PSYR_4120
PSTU379731 PST_1227PST_1043PST_1039PST_1048PST_1067PST_1066PST_1062PST_1061
PSP312153 PNUC_0123PNUC_0100PNUC_0104PNUC_0098PNUC_0123PNUC_0129PNUC_0128PNUC_1885PNUC_1886
PSP296591 BPRO_0817BPRO_0797BPRO_0801BPRO_0795BPRO_0817BPRO_0825BPRO_0824BPRO_4112BPRO_4113
PPUT76869 PPUTGB1_4377PPUTGB1_0968PPUTGB1_0970PPUTGB1_0967PPUTGB1_4548PPUTGB1_4528PPUTGB1_4529PPUTGB1_4533PPUTGB1_4534
PPUT351746 PPUT_4291PPUT_1000PPUT_1002PPUT_0999PPUT_4424PPUT_4403PPUT_4404PPUT_4408PPUT_4409
PPUT160488 PP_1430PP_0961PP_0963PP_0960PP_1301PP_1321PP_1320PP_1316PP_1315
PPRO298386 PBPRA3240PBPRA3245PBPRA3243PBPRA3246PBPRA3241PBPRA3231PBPRA3232PBPRA3236PBPRA3237
PNAP365044 PNAP_0709PNAP_0689PNAP_0693PNAP_0687PNAP_0709PNAP_0717PNAP_0716PNAP_0501PNAP_0500
PMUL272843 PM0734PM0177PM0179PM0176PM0748PM0523PM0522PM0521PM0520
PMEN399739 PMEN_1471PMEN_0881PMEN_0878PMEN_0888PMEN_0907PMEN_0906PMEN_0902PMEN_0901
PLUM243265 PLU4018PLU4031PLU4029PLU4032PLU4022PLU4012PLU4013PLU4014PLU4015
PING357804 PING_1037PING_2884PING_2882PING_2885PING_2880PING_2870PING_2871PING_2876PING_2877
PHAL326442 PSHAA2536PSHAA2541PSHAA2539PSHAA2542PSHAA2537PSHAA2526PSHAA2527PSHAA2531PSHAA2532
PFLU220664 PFL_1451PFL_0926PFL_0923PFL_0933PFL_5076PFL_5077PFL_5081PFL_5082
PFLU216595 PFLU0891PFLU0893PFLU0890PFLU0758PFLU0845PFLU0844PFLU0840PFLU0839
PFLU205922 PFL_1365PFL_0866PFL_0868PFL_0865PFL_0875PFL_4688PFL_4689PFL_4693PFL_4694
PENT384676 PSEEN4293PSEEN1102PSEEN1104PSEEN1101PSEEN4521PSEEN4501PSEEN4502PSEEN4506PSEEN4507
PATL342610 PATL_0553PATL_0558PATL_0556PATL_0559PATL_0554PATL_3697PATL_3698PATL_3702PATL_3703
PAER208964 PA0766PA4453PA4451PA4454PA4446PA4427PA4428PA4432PA4433
PAER208963 PA14_54390PA14_57840PA14_57820PA14_57850PA14_57760PA14_57520PA14_57530PA14_57580PA14_57590
NOCE323261 NOC_2139NOC_2782NOC_2387NOC_2784NOC_2139NOC_0295NOC_0296NOC_2837NOC_2836
NMUL323848 NMUL_A0510NMUL_A2746NMUL_A2742NMUL_A2747NMUL_A0510NMUL_A1001NMUL_A1002NMUL_A0560NMUL_A0561
NMEN122586 NMB_0532NMB_1963NMB_0009NMB_1964NMB_1952NMB_1953NMB_2056NMB_2057
NEUT335283 NEUT_1685NEUT_0854NEUT_0858NEUT_0853NEUT_1685NEUT_1114NEUT_1113NEUT_0763NEUT_0762
NEUR228410 NE1508NE2381NE2377NE2382NE1508NE0813NE0812NE1483NE1484
MSUC221988 MS0993MS1710MS1708MS1711MS1373MS1280MS1281MS1282MS1283
MSP400668 MMWYL1_1102MMWYL1_2409MMWYL1_2411MMWYL1_2404MMWYL1_2397MMWYL1_2398MMWYL1_2399MMWYL1_2400
MPET420662 MPE_A0844MPE_A3097MPE_A0828MPE_A3099MPE_A0844MPE_A0853MPE_A0852MPE_A3156MPE_A3157
MMAG342108 AMB3492AMB3485AMB2116AMB2743AMB3481AMB3942AMB3556AMB3557
MFLA265072 MFLA_0261MFLA_0240MFLA_0244MFLA_0239MFLA_0261MFLA_0264MFLA_0263MFLA_0056MFLA_0055
MCAP243233 MCA_2343MCA_2792MCA_0260MCA_1967MCA_2343MCA_1958MCA_1959MCA_0905MCA_0904
MAQU351348 MAQU_2259MAQU_2706MAQU_2704MAQU_2707MAQU_2466MAQU_2467MAQU_2471MAQU_2472
LPNE400673 LPC_0747LPC_2451LPC_2449LPC_2452LPC_0747LPC_0434LPC_0433LPC_0429LPC_0428
LPNE297246 LPP1285LPP0906LPP0908LPP0905LPP1285LPP2756LPP2757LPP2761LPP2762
LPNE297245 LPL1284LPL0875LPL0877LPL0874LPL1284LPL2629LPL2630LPL2634LPL2635
LPNE272624 LPG1331LPG0844LPG0846LPG0843LPG1331LPG2701LPG2702LPG2706LPG2707
LCHO395495 LCHO_1605LCHO_3390LCHO_1584LCHO_3392LCHO_1605LCHO_0934LCHO_0933LCHO_3451LCHO_3452
KPNE272620 GKPORF_B2968GKPORF_B2937GKPORF_B2935GKPORF_B2938GKPORF_B2969GKPORF_B2962GKPORF_B2963GKPORF_B2964GKPORF_B2965
JSP375286 MMA_3275MMA_3295MMA_3291MMA_3297MMA_3275MMA_3267MMA_3268MMA_0295MMA_0294
ILOI283942 IL0411IL0406IL0408IL0405IL0410IL0420IL0419IL0415IL0414
HSOM228400 HSM_1285HSM_1587HSM_1585HSM_1588HSM_1533HSM_1222HSM_1221HSM_1220HSM_1219
HSOM205914 HS_0816HS_1170HS_1168HS_1171HS_1049HS_0755HS_0754HS_0753HS_0752
HINF71421 HI_1259HI_1084HI_1082HI_1085HI_0945HI_1440HI_1441HI_1442HI_1443
HINF374930 CGSHIEE_04045CGSHIEE_06645CGSHIEE_06655CGSHIEE_06640CGSHIEE_07240CGSHIEE_04800CGSHIEE_04805CGSHIEE_04810CGSHIEE_04815
HINF281310 NTHI1905NTHI1247NTHI1245NTHI1248NTHI1116NTHI1690NTHI1689NTHI1688NTHI1687
HHAL349124 HHAL_2110HHAL_2117HHAL_2115HHAL_2118HHAL_2110HHAL_2105HHAL_2106HHAL_2076HHAL_2077
HDUC233412 HD_0260HD_0256HD_0254HD_0257HD_1350HD_1426HD_1425HD_1493HD_1494
HCHE349521 HCH_01114HCH_05308HCH_05312HCH_05303HCH_10003HCH_05897HCH_05901HCH_05902
HARS204773 HEAR3056HEAR3076HEAR3072HEAR3078HEAR3056HEAR3048HEAR3049HEAR0241HEAR0240
ESP42895 ENT638_3669ENT638_3628ENT638_3626ENT638_3629ENT638_3670ENT638_3663ENT638_3664ENT638_3665ENT638_3666
EFER585054 EFER_3205EFER_3169EFER_3167EFER_3170EFER_3206EFER_3198EFER_3199EFER_3201EFER_3202
ECOO157 DEGQYRBCYRBAYRBDDEGSSSPBSSPARPSIRPLM
ECOL83334 ECS4107ECS4071ECS4069ECS4072ECS4108ECS4101ECS4102ECS4103ECS4104
ECOL585397 ECED1_3884ECED1_3850ECED1_3848ECED1_3851ECED1_3885ECED1_3878ECED1_3879ECED1_3880ECED1_3881
ECOL585057 ECIAI39_3724ECIAI39_3687ECIAI39_3685ECIAI39_3688ECIAI39_3725ECIAI39_3717ECIAI39_3718ECIAI39_3720ECIAI39_3721
ECOL585056 ECUMN_3708ECUMN_3672ECUMN_3670ECUMN_3673ECUMN_3709ECUMN_3702ECUMN_3703ECUMN_3704ECUMN_3705
ECOL585055 EC55989_3647EC55989_3610EC55989_3608EC55989_3611EC55989_3648EC55989_3641EC55989_3642EC55989_3643EC55989_3644
ECOL585035 ECS88_3610ECS88_3574ECS88_3572ECS88_3575ECS88_3611ECS88_3604ECS88_3605ECS88_3606ECS88_3607
ECOL585034 ECIAI1_3376ECIAI1_3340ECIAI1_3338ECIAI1_3341ECIAI1_3377ECIAI1_3370ECIAI1_3371ECIAI1_3372ECIAI1_3373
ECOL481805 ECOLC_0472ECOLC_0508ECOLC_0510ECOLC_0507ECOLC_0471ECOLC_0478ECOLC_0477ECOLC_0476ECOLC_0475
ECOL469008 ECBD_0513ECBD_0550ECBD_0552ECBD_0549ECBD_0512ECBD_0519ECBD_0518ECBD_0517ECBD_0516
ECOL439855 ECSMS35_3530ECSMS35_3488ECSMS35_3486ECSMS35_3489ECSMS35_3531ECSMS35_3523ECSMS35_3524ECSMS35_3525ECSMS35_3527
ECOL413997 ECB_03094ECB_03057ECB_03055ECB_03058ECB_03095ECB_03088ECB_03089ECB_03090ECB_03091
ECOL409438 ECSE_3513ECSE_3476ECSE_3474ECSE_3477ECSE_3514ECSE_3507ECSE_3508ECSE_3509ECSE_3510
ECOL405955 APECO1_3210APECO1_3243APECO1_3244APECO1_3242APECO1_3209APECO1_3216APECO1_3215APECO1_3214APECO1_3213
ECOL364106 UTI89_C3665UTI89_C3628UTI89_C3624UTI89_C3629UTI89_C3666UTI89_C3657UTI89_C3658UTI89_C3660UTI89_C3661
ECOL362663 ECP_3317ECP_3279ECP_3277ECP_3280ECP_3318ECP_3310ECP_3311ECP_3313ECP_3314
ECOL331111 ECE24377A_3717ECE24377A_3679ECE24377A_3676ECE24377A_3681ECE24377A_3718ECE24377A_3710ECE24377A_3712ECE24377A_3713ECE24377A_3714
ECOL316407 ECK3223:JW3203:B3234ECK3181:JW3159:B3192ECK3179:JW3157:B3190ECK3182:JW3160:B3193ECK3224:JW3204:B3235ECK3217:JW3197:B3228ECK3218:JW3198:B3229ECK3219:JW3199:B3230ECK3220:JW3200:B3231
ECOL199310 C3989C3952C3948C3953C3990C3981C3982C3984C3985
ECAR218491 ECA0303ECA0298ECA0300ECA0297ECA0302ECA0309ECA0308ECA0307ECA0306
DARO159087 DARO_3371DARO_3398DARO_3394DARO_3400DARO_3371DARO_0813DARO_0812DARO_0650DARO_0649
CSAL290398 CSAL_2211CSAL_2217CSAL_2215CSAL_2218CSAL_2211CSAL_2204CSAL_2205CSAL_2206CSAL_2207
CPSY167879 CPS_4346CPS_4533CPS_4531CPS_4534CPS_4347CPS_4436CPS_4437CPS_4442CPS_4443
BVIE269482 BCEP1808_0418BCEP1808_0397BCEP1808_0401BCEP1808_0395BCEP1808_0418BCEP1808_0424BCEP1808_0423BCEP1808_0646BCEP1808_0645
BTHA271848 BTH_I2979BTH_I3000BTH_I2996BTH_I3002BTH_I2979BTH_I2973BTH_I2974BTH_I1234BTH_I1233
BSP36773 BCEP18194_A3537BCEP18194_A3516BCEP18194_A3520BCEP18194_A3514BCEP18194_A3537BCEP18194_A3543BCEP18194_A3542BCEP18194_A3766BCEP18194_A3765
BPSE320373 BURPS668_3652BURPS668_3673BURPS668_3669BURPS668_3675BURPS668_3652BURPS668_3646BURPS668_3647BURPS668_3377BURPS668_3378
BPSE320372 BURPS1710B_A3977BURPS1710B_A3998BURPS1710B_A3994BURPS1710B_A4000BURPS1710B_A3977BURPS1710B_A3971BURPS1710B_A3972BURPS1710B_A3695BURPS1710B_A3696
BPSE272560 BPSL3125BPSL3146BPSL3142BPSL3148BPSL3125BPSL3119BPSL3120BPSL2910BPSL2911
BPET94624 BPET0125BPET0144BPET0141BPET0146BPET0125BPET0118BPET0119BPET0594BPET0593
BPER257313 BP2434BP3761BP3765BP3759BP0280BP0273BP0274BP2961BP2962
BPAR257311 BPP3298BPP4261BPP4264BPP4259BPP4280BPP4287BPP4286BPP3883BPP3884
BMAL320389 BMA10247_2750BMA10247_2772BMA10247_2768BMA10247_2774BMA10247_2750BMA10247_2744BMA10247_2745BMA10247_2520BMA10247_2519
BMAL320388 BMASAVP1_A3254BMASAVP1_A3232BMASAVP1_A3236BMASAVP1_A3230BMASAVP1_A3254BMASAVP1_A3260BMASAVP1_A3259BMASAVP1_A0254BMASAVP1_A0253
BMAL243160 BMA_2700BMA_2722BMA_2717BMA_2724BMA_2700BMA_2694BMA_2695BMA_2342BMA_2341
BCEN331272 BCEN2424_0439BCEN2424_0418BCEN2424_0422BCEN2424_0416BCEN2424_0439BCEN2424_0445BCEN2424_0444BCEN2424_0680BCEN2424_0679
BCEN331271 BCEN_2668BCEN_2689BCEN_2685BCEN_2691BCEN_2668BCEN_2662BCEN_2663BCEN_0197BCEN_0196
BBRO257310 BB3749BB4848BB4851BB4846BB4867BB4874BB4873BB4356BB4357
BAMB398577 BAMMC406_0366BAMMC406_0345BAMMC406_0349BAMMC406_0343BAMMC406_0366BAMMC406_0372BAMMC406_0371BAMMC406_0600BAMMC406_0599
BAMB339670 BAMB_0357BAMB_0336BAMB_0340BAMB_0334BAMB_0357BAMB_0363BAMB_0362BAMB_0574BAMB_0573
ASP76114 EBA2969EBA2206EBA1303EBA1311EBA1283EBA1194EBA1195EBA937EBA938
ASP62977 ACIAD2586ACIAD3241ACIAD0659ACIAD3242ACIAD1348ACIAD3015ACIAD3014ACIAD3013ACIAD3012
ASP62928 AZO3337AZO0810AZO0814AZO0808AZO3337AZO0964AZO0963AZO2759AZO2760
ASP232721 AJS_0784AJS_0752AJS_0757AJS_0750AJS_0784AJS_0793AJS_0792AJS_0626AJS_0625
ASAL382245 ASA_0330ASA_0306ASA_0304ASA_0307ASA_0329ASA_0339ASA_0338ASA_0334ASA_0333
APLE434271 APJL_1306APJL_1302APJL_1300APJL_1303APJL_0744APJL_0647APJL_0648APJL_0595APJL_0594
APLE416269 APL_1293APL_1289APL_1287APL_1290APL_0742APL_0657APL_0658APL_0601APL_0600
AHYD196024 AHA_3908AHA_3932AHA_3934AHA_3931AHA_3909AHA_3899AHA_3900AHA_3904AHA_3905
AEHR187272 MLG_2213MLG_2220MLG_2218MLG_2221MLG_2213MLG_2207MLG_2208MLG_2241MLG_2242
ABOR393595 ABO_0815ABO_0558ABO_0559ABO_0565ABO_0582ABO_0581ABO_0577ABO_0576
ABAU360910 BAV3326BAV3308BAV3311BAV3306BAV3326BAV3333BAV3332BAV2969BAV2970


Organism features enriched in list (features available for 155 out of the 161 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00014181192
Arrangment:Singles 0.006075788286
Disease:Bubonic_plague 0.000328666
Disease:Dysentery 0.000328666
Disease:Gastroenteritis 0.00016871013
Disease:Legionnaire's_disease 0.004855044
Endospores:No 2.812e-829211
GC_Content_Range4:0-40 5.726e-2112213
GC_Content_Range4:40-60 1.181e-991224
GC_Content_Range4:60-100 0.001391652145
GC_Content_Range7:30-40 4.368e-1312166
GC_Content_Range7:50-60 9.010e-953107
GC_Content_Range7:60-70 0.000152952134
Genome_Size_Range5:0-2 2.737e-194155
Genome_Size_Range5:2-4 6.522e-631197
Genome_Size_Range5:4-6 2.728e-2197184
Genome_Size_Range5:6-10 0.00035452347
Genome_Size_Range9:1-2 1.011e-144128
Genome_Size_Range9:2-3 0.000153717120
Genome_Size_Range9:4-5 4.121e-84896
Genome_Size_Range9:5-6 1.877e-104988
Genome_Size_Range9:6-8 0.00001882238
Gram_Stain:Gram_Neg 1.671e-28143333
Habitat:Specialized 0.0030038653
Motility:No 3.336e-1013151
Motility:Yes 6.775e-12107267
Optimal_temp.:- 0.006714780257
Optimal_temp.:35-37 0.00016871013
Oxygen_Req:Anaerobic 9.999e-114102
Oxygen_Req:Facultative 5.630e-983201
Pathogenic_in:No 6.821e-638226
Pathogenic_in:Plant 0.00015301115
Shape:Coccus 6.356e-8482
Shape:Rod 1.713e-15132347
Shape:Spiral 0.0016230234
Temp._range:Mesophilic 0.0010237138473
Temp._range:Thermophilic 0.0001873135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 187
Effective number of orgs (counting one per cluster within 468 clusters): 163

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17401
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPNE170187 ncbi Streptococcus pneumoniae G541
SMAR399550 ncbi Staphylothermus marinus F10
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SARE391037 ncbi Salinispora arenicola CNS-2051
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RALB246199 Ruminococcus albus 80
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 230
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
GFOR411154 ncbi Gramella forsetii KT08031
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI31
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CABO218497 ncbi Chlamydophila abortus S26/31
BTUR314724 ncbi Borrelia turicatae 91E1351
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
AMAR234826 ncbi Anaplasma marginale St. Maries1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G7682   G7659   G7657   EG12799   EG11652   EG10978   EG10977   EG10908   EG10874   
WSUC273121 WS2226
UURE95667 UU576
UURE95664 UUR10_0676
UPAR505682 UPA3_0615
UMET351160
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TPAL243276
TLET416591
TKOD69014
TERY203124 TERY_0678
TDEN243275 TDE_0852
TACI273075
STRO369723 STROP_3864
STOK273063
SSUI391295 SSU05_1898
SSP387093 SUN_0189
SSOL273057
SRUB309807 SRU_0038
SPNE170187 SPN08184
SMAR399550
SERY405948 SACE_6781
SAVE227882 SAV4957
SARE391037 SARE_4254
SALA317655 SALA_0244
SACI330779
RSAL288705
RALB246199
PTOR263820
PRUM264731
PMAR59920 PMN2A_1103
PMAR167555 NATL1_19781
PMAR167546 P9301ORF_1757
PISL384616
PINT246198 PIN_A2138
PHOR70601
PGIN242619 PG_0593
PFUR186497
PDIS435591
PAST100379 PAM139
PARS340102
PAER178306
PACN267747 PPA1803
PABY272844
OTSU357244 OTBS_1584
NSP35761 NOCA_2820
NSEN222891
NPHA348780
MVAN350058 MVAN_0923
MTUB419947 MRA_1978
MTUB336982 TBFG_11998
MTHE349307
MTHE187420
MTBRV RV1967
MTBCDC MT2019
MSYN262723
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196 MSMEG_0347
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243 MAV_0658
MART243272
MAEO419665
MACE188937
MABS561007 MAB_4564C
LXYL281090 LXX20030
LSPH444177 BSPH_4582
LMES203120 LEUM_0231
LJOH257314 LJ_0367
LINT267671 LIC_10761
LINT189518 LA3408
LHEL405566 LHV_0344
LGAS324831 LGAS_0322
LDEL321956 LBUL_0383
LCAS321967
LBOR355277 LBJ_0760
LBOR355276 LBL_2318
LACI272621 LBA0324
KRAD266940 KRAD_0720
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMAR272569
HBUT415426
HAUR316274
GFOR411154 GFO_0623
FSUC59374 FSU1421
FSP1855
FSP106370 FRANCCI3_0614
FNUC190304 FN0330
FNOD381764 FNOD_0433
FMAG334413 FMG_1478
FJOH376686 FJOH_0019
FALN326424
ERUM302409 ERGA_CDS_01180
ERUM254945 ERWE_CDS_01220
EFAE226185 EF_3230
ECHA205920 ECH_0183
ECAN269484 ECAJ_0123
DSP255470
DSP216389
DRAD243230
DGEO319795 DGEO_1734
DETH243164
CTRA471473 CTLON_0195
CTRA471472 CTL0195
CSUL444179
CPNE182082 CPB1016
CPNE138677 CPJ0979
CPNE115713 CPN0979
CPNE115711 CP_0877
CPER289380 CPR_2363
CPER195103 CPF_2678
CPER195102 CPE2369
CPEL335992 SAR11_0036
CMUR243161 TC_0210
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEI306537
CHUT269798 CHU_3039
CHOM360107 CHAB381_0320
CGLU196627
CFET360106
CFEL264202 CF0231
CEFF196164
CDIP257309
CDES477974 DAUD_0331
CCUR360105
CCON360104 CCC13826_0737
CCAV227941 CCA_00782
CBEI290402 CBEI_0187
CABO218497 CAB750
BTUR314724 BT0338
BTHE226186 BT_1312
BLON206672 BL1572
BHER314723 BH0338
BGAR290434 BG0339
BFRA295405 BF2744
BFRA272559 BF2761
BBUR224326 BB_0338
BAFZ390236 BAPKO_0347
AYEL322098 AYWB_581
AURANTIMONAS
ASP1667
APHA212042 APH_0045
APER272557
AMAR234826 AM074
AFUL224325
ACEL351607 ACEL_0341
AAUR290340
AAEO224324 AQ_1877


Organism features enriched in list (features available for 178 out of the 187 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00038111592
Arrangment:Pairs 0.000798521112
Arrangment:Singles 0.0022078102286
Disease:Leptospirosis 0.008486944
Disease:Pharyngitis 0.000067688
Disease:bronchitis_and_pneumonitis 0.000067688
Endospores:No 1.654e-13104211
GC_Content_Range7:0-30 3.039e-62947
GC_Content_Range7:40-50 0.006556146117
GC_Content_Range7:50-60 0.000076117107
Genome_Size_Range5:0-2 4.113e-1282155
Genome_Size_Range5:4-6 9.572e-928184
Genome_Size_Range9:0-1 2.618e-72127
Genome_Size_Range9:1-2 1.770e-661128
Genome_Size_Range9:4-5 0.00015061596
Genome_Size_Range9:5-6 0.00014101388
Gram_Stain:Gram_Neg 1.025e-1361333
Gram_Stain:Gram_Pos 0.005983457150
Habitat:Host-associated 0.005734775206
Habitat:Multiple 0.000021134178
Habitat:Specialized 0.00144622653
Motility:No 0.000011567151
Motility:Yes 7.895e-658267
Optimal_temp.:- 0.000824362257
Optimal_temp.:37 0.000347847106
Optimal_temp.:85 0.008486944
Oxygen_Req:Anaerobic 3.326e-753102
Oxygen_Req:Facultative 5.628e-834201
Pathogenic_in:Human 0.008880454213
Salinity:Extreme_halophilic 0.003750767
Shape:Irregular_coccus 1.001e-91717
Shape:Rod 2.531e-876347
Shape:Sphere 1.235e-61619
Temp._range:Hyperthermophilic 1.891e-71923
Temp._range:Mesophilic 0.0017673132473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 11
Effective number of orgs (counting one per cluster within 468 clusters): 8

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-1 0.002540012249
NEUR228410 ncbi Nitrosomonas europaea ATCC 19718 0.004467613039
NEUT335283 ncbi Nitrosomonas eutropha C91 0.004656813099
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 1 0.005713713399
LPNE297245 ncbi Legionella pneumophila Lens 0.006276213539
HDUC233412 ncbi Haemophilus ducreyi 35000HP 0.006402913569
LPNE400673 ncbi Legionella pneumophila Corby 0.006488713589
LPNE297246 ncbi Legionella pneumophila Paris 0.006663313629
NOCE323261 ncbi Nitrosococcus oceani ATCC 19707 0.007118113729
NMUL323848 ncbi Nitrosospira multiformis ATCC 25196 0.007452713799
HHAL349124 ncbi Halorhodospira halophila SL1 0.007501613809


Names of the homologs of the genes in the group in each of these orgs
  G7682   G7659   G7657   EG12799   EG11652   EG10978   EG10977   EG10908   EG10874   
PSP312153 PNUC_0123PNUC_0100PNUC_0104PNUC_0098PNUC_0123PNUC_0129PNUC_0128PNUC_1885PNUC_1886
NEUR228410 NE1508NE2381NE2377NE2382NE1508NE0813NE0812NE1483NE1484
NEUT335283 NEUT_1685NEUT_0854NEUT_0858NEUT_0853NEUT_1685NEUT_1114NEUT_1113NEUT_0763NEUT_0762
LPNE272624 LPG1331LPG0844LPG0846LPG0843LPG1331LPG2701LPG2702LPG2706LPG2707
LPNE297245 LPL1284LPL0875LPL0877LPL0874LPL1284LPL2629LPL2630LPL2634LPL2635
HDUC233412 HD_0260HD_0256HD_0254HD_0257HD_1350HD_1426HD_1425HD_1493HD_1494
LPNE400673 LPC_0747LPC_2451LPC_2449LPC_2452LPC_0747LPC_0434LPC_0433LPC_0429LPC_0428
LPNE297246 LPP1285LPP0906LPP0908LPP0905LPP1285LPP2756LPP2757LPP2761LPP2762
NOCE323261 NOC_2139NOC_2782NOC_2387NOC_2784NOC_2139NOC_0295NOC_0296NOC_2837NOC_2836
NMUL323848 NMUL_A0510NMUL_A2746NMUL_A2742NMUL_A2747NMUL_A0510NMUL_A1001NMUL_A1002NMUL_A0560NMUL_A0561
HHAL349124 HHAL_2110HHAL_2117HHAL_2115HHAL_2118HHAL_2110HHAL_2105HHAL_2106HHAL_2076HHAL_2077


Organism features enriched in list (features available for 11 out of the 11 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Legionnaire's_disease 6.927e-844
Genome_Size_Range5:2-4 0.000123210197
Genome_Size_Range9:3-4 0.0010664677
Optimal_temp.:- 0.001569710257
Shape:Pleomorphic 0.008262328



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181420.6586
AST-PWY (arginine degradation II (AST pathway))1201010.6507
GLYCOCAT-PWY (glycogen degradation I)2461470.6258
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001570.5832
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951240.5820
PWY-5918 (heme biosynthesis I)2721450.5523
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761130.5499
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251300.5485
PWY-1269 (CMP-KDO biosynthesis I)3251580.5433
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911170.5379
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861470.5378
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901470.5297
PWY-5386 (methylglyoxal degradation I)3051510.5294
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491000.5286
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911470.5277
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961480.5250
GLUCONSUPER-PWY (D-gluconate degradation)2291270.5158
PWY-4041 (γ-glutamyl cycle)2791420.5154
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81680.5131
GALACTITOLCAT-PWY (galactitol degradation)73630.5031
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481580.5026
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491310.4989
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491310.4989
PWY-5148 (acyl-CoA hydrolysis)2271240.4978
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391550.4961
PWY-5913 (TCA cycle variation IV)3011440.4858
GLUCARDEG-PWY (D-glucarate degradation I)152960.4842
PWY0-981 (taurine degradation IV)106760.4743
TYRFUMCAT-PWY (tyrosine degradation I)1841060.4698
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831050.4646
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94690.4580
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96690.4488
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911050.4425
PWY0-1182 (trehalose degradation II (trehalase))70560.4401
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135840.4371
LIPASYN-PWY (phospholipases)2121110.4350
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291440.4332
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50440.4194
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135820.4193
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138830.4180
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001340.4144
PWY-6196 (serine racemization)102680.4126
PWY-561 (superpathway of glyoxylate cycle)162910.4107
GALACTARDEG-PWY (D-galactarate degradation I)151870.4105
DAPLYSINESYN-PWY (lysine biosynthesis I)3421440.4098
PWY-6134 (tyrosine biosynthesis IV)89620.4087
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301130.4070
GLYOXYLATE-BYPASS (glyoxylate cycle)169930.4068
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981560.4057
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112710.4016
KDOSYN-PWY (KDO transfer to lipid IVA I)180960.4003



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7659   G7657   EG12799   EG11652   EG10978   EG10977   EG10908   EG10874   
G76820.9990890.9992250.9990380.9998160.9992120.9992150.9989480.999023
G76590.999720.9998350.9992620.9988730.9988480.9985150.998608
G76570.9996970.999430.9989820.998920.9988280.998676
EG127990.9992860.9989430.9989130.9985740.998676
EG116520.9993860.9993960.9992130.999241
EG109780.9998820.9994650.999421
EG109770.9994450.99939
EG109080.999998
EG10874



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PAIRWISE BLAST SCORES:

  G7682   G7659   G7657   EG12799   EG11652   EG10978   EG10977   EG10908   EG10874   
G76820.0f0--------
G7659-0.0f0-------
G7657--0.0f0------
EG12799---0.0f0-----
EG116525.7e-48---0.0f0----
EG10978-----0.0f0---
EG10977------0.0f0--
EG10908-------0.0f0-
EG10874--------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-45-CPLX (phospholipid ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.222, average score: 0.999)
  Genes in pathway or complex:
             0.9975 0.9964 G7658 (mlaB) G7658-MONOMER (MlaB)
   *in cand* 0.9992 0.9986 EG12799 (mlaD) EG12799-MONOMER (MlaD)
             0.9991 0.9982 EG12800 (mlaE) YRBE-MONOMER (MlaE)
             0.9991 0.9984 EG12801 (mlaF) YRBF-MONOMER (MlaF)
   *in cand* 0.9992 0.9985 G7659 (mlaC) G7659-MONOMER (MlaC)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9992 0.9986 EG10874 (rplM) EG10874-MONOMER (50S ribosomal subunit protein L13)
   *in cand* 0.9992 0.9985 EG10908 (rpsI) EG10908-MONOMER (30S ribosomal subunit protein S9)
   *in cand* 0.9993 0.9988 EG10977 (sspA) EG10977-MONOMER (stringent starvation protein A)
   *in cand* 0.9994 0.9989 EG10978 (sspB) EG10978-MONOMER (SspB)
   *in cand* 0.9994 0.9992 EG11652 (degS) EG11652-MONOMER (DegS serine endoprotease)
   *in cand* 0.9993 0.9987 G7657 (yrbA) G7657-MONOMER (predicted DNA-binding transcriptional regulator)
   *in cand* 0.9993 0.9989 G7682 (degQ) G7682-MONOMER (serine endoprotease, periplasmic)

- CPLX0-3964 (ribosome) (degree of match pw to cand: 0.034, degree of match cand to pw: 0.222, average score: 0.685)
  Genes in pathway or complex:
                NIL    NIL EG30077 (rrlA) RRLA-RRNA (23S ribosomal RNA (rrlA))
                NIL    NIL EG30070 (rrfA) RRFA-RRNA (5S ribosomal RNA (rrfA))
             0.9761 0.9366 EG10864 (rplA) EG10864-MONOMER (50S ribosomal subunit protein L1)
             0.9892 0.9692 EG10865 (rplB) EG10865-MONOMER (50S ribosomal subunit protein L2)
             0.9874 0.9657 EG10866 (rplC) EG10866-MONOMER (50S ribosomal subunit protein L3)
             0.9852 0.9685 EG10867 (rplD) EG10867-MONOMER (50S ribosomal subunit protein L4)
             0.9895 0.9742 EG10868 (rplE) EG10868-MONOMER (50S ribosomal subunit protein L5)
             0.9909 0.9752 EG10869 (rplF) EG10869-MONOMER (50S ribosomal subunit protein L6)
             0.9769 0.9372 EG10873 (rplL) MONOMER0-2811 (50S ribosomal subunit protein L7)
             0.9730 0.9370 EG10871 (rplJ) EG10871-MONOMER (50S ribosomal subunit protein L10)
             0.8118 0.5216 EG10870 (rplI) EG10870-MONOMER (50S ribosomal subunit protein L9)
             0.9753 0.9368 EG10872 (rplK) EG10872-MONOMER (50S ribosomal subunit protein L11)
   *in cand* 0.9992 0.9986 EG10874 (rplM) EG10874-MONOMER (50S ribosomal subunit protein L13)
             0.9900 0.9727 EG10875 (rplN) EG10875-MONOMER (50S ribosomal subunit protein L14)
             0.9895 0.9766 EG10876 (rplO) EG10876-MONOMER (50S ribosomal subunit protein L15)
             0.9883 0.9706 EG10877 (rplP) EG10877-MONOMER (50S ribosomal subunit protein L16)
             0.9919 0.9822 EG10878 (rplQ) EG10878-MONOMER (50S ribosomal subunit protein L17)
             0.9912 0.9756 EG10879 (rplR) EG10879-MONOMER (50S ribosomal subunit protein L18)
             0.1529 0.0022 EG10880 (rplS) EG10880-MONOMER (50S ribosomal subunit protein L19)
             0.0194 0.0014 EG10881 (rplT) EG10881-MONOMER (50S ribosomal subunit protein L20)
             0.9838 0.9364 EG50001 (rplU) EG50001-MONOMER (50S ribosomal subunit protein L21)
             0.9853 0.9672 EG10882 (rplV) EG10882-MONOMER (50S ribosomal subunit protein L22)
             0.9873 0.9650 EG10883 (rplW) EG10883-MONOMER (50S ribosomal subunit protein L23)
             0.9906 0.9748 EG10884 (rplX) EG10884-MONOMER (50S ribosomal subunit protein L24)
             0.5467 0.2010 EG10885 (rplY) EG10885-MONOMER (50S ribosomal subunit protein L25)
             0.9791 0.9362 EG50002 (rpmA) EG50002-MONOMER (50S ribosomal subunit protein L27)
             0.7114 0.4150 EG10886 (rpmB) EG10886-MONOMER (50S ribosomal subunit protein L28)
             0.9873 0.9634 EG10887 (rpmC) EG10887-MONOMER (50S ribosomal subunit protein L29)
             0.9916 0.9781 EG10888 (rpmD) EG10888-MONOMER (50S ribosomal subunit protein L30)
             0.8781 0.5151 EG10889 (rpmE) EG10889-MONOMER (50S ribosomal subunit protein L31)
             0.0226 0.0006 EG10890 (rpmF) EG10890-MONOMER (50S ribosomal subunit protein L32)
             0.9302 0.6434 EG10891 (rpmG) EG10891-MONOMER (50S ribosomal subunit protein L33)
             0.8655 0.7962 EG10892 (rpmH) EG10892-MONOMER (50S ribosomal subunit protein L34)
             0.0597 0.0271 EG11231 (rpmI) EG11231-MONOMER (50S ribosomal subunit protein L35)
             0.9805 0.9650 EG11232 (rpmJ) EG11232-MONOMER (50S ribosomal subunit protein L36)
                NIL    NIL EG30084 (rrsA) RRSA-RRNA (16S ribosomal RNA (rrsA))
             0.0548 0.0003 EG10900 (rpsA) EG10900-MONOMER (30S ribosomal subunit protein S1)
             0.2908 0.0449 EG10901 (rpsB) EG10901-MONOMER (30S ribosomal subunit protein S2)
             0.9886 0.9702 EG10902 (rpsC) EG10902-MONOMER (30S ribosomal subunit protein S3)
             0.9866 0.9667 EG10903 (rpsD) EG10903-MONOMER (30S ribosomal subunit protein S4)
             0.9914 0.9759 EG10904 (rpsE) EG10904-MONOMER (30S ribosomal subunit protein S5)
             0.8314 0.5180 EG10905 (rpsF) EG10905-MONOMER (30S ribosomal subunit protein S6)
             0.9902 0.9718 EG10906 (rpsG) EG10906-MONOMER (30S ribosomal subunit protein S7)
             0.9895 0.9748 EG10907 (rpsH) EG10907-MONOMER (30S ribosomal subunit protein S8)
   *in cand* 0.9992 0.9985 EG10908 (rpsI) EG10908-MONOMER (30S ribosomal subunit protein S9)
             0.9871 0.9675 EG10909 (rpsJ) EG10909-MONOMER (30S ribosomal subunit protein S10)
             0.9914 0.9759 EG10910 (rpsK) EG10910-MONOMER (30S ribosomal subunit protein S11)
             0.9883 0.9701 EG10911 (rpsL) EG10911-MONOMER (30S ribosomal subunit protein S12)
             0.9919 0.9776 EG10912 (rpsM) EG10912-MONOMER (30S ribosomal subunit protein S13)
             0.9843 0.9647 EG10913 (rpsN) EG10913-MONOMER (30S ribosomal subunit protein S14)
             0.8036 0.4701 EG10914 (rpsO) EG10914-MONOMER (30S ribosomal subunit protein S15)
             0.2488 0.0026 EG10915 (rpsP) EG10915-MONOMER (30S ribosomal subunit protein S16)
             0.9879 0.9673 EG10916 (rpsQ) EG10916-MONOMER (30S ribosomal subunit protein S17)
             0.8126 0.5318 EG10917 (rpsR) EG10917-MONOMER (30S ribosomal subunit protein S18)
             0.9829 0.9556 EG10918 (rpsS) EG10918-MONOMER (30S ribosomal subunit protein S19)
             0.4354 0.0527 EG10919 (rpsT) EG10919-MONOMER (30S ribosomal subunit protein S20)
             0.8084 0.3953 EG10920 (rpsU) EG10920-MONOMER (30S ribosomal subunit protein S21)
             0.0937 0.0912 EG11508 (sra) EG11508-MONOMER (30S ribosomal subunit protein S22)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9988 EG10977 (sspA) EG10977-MONOMER (stringent starvation protein A)
   *in cand* 0.9994 0.9989 EG10978 (sspB) EG10978-MONOMER (SspB)
   *in cand* 0.9994 0.9992 EG11652 (degS) EG11652-MONOMER (DegS serine endoprotease)
   *in cand* 0.9992 0.9986 EG12799 (mlaD) EG12799-MONOMER (MlaD)
   *in cand* 0.9993 0.9987 G7657 (yrbA) G7657-MONOMER (predicted DNA-binding transcriptional regulator)
   *in cand* 0.9992 0.9985 G7659 (mlaC) G7659-MONOMER (MlaC)
   *in cand* 0.9993 0.9989 G7682 (degQ) G7682-MONOMER (serine endoprotease, periplasmic)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10874 EG10908 EG10977 EG10978 EG11652 G7682 (centered at EG10874)
EG12799 G7657 G7659 (centered at G7659)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7682   G7659   G7657   EG12799   EG11652   EG10978   EG10977   EG10908   EG10874   
264/623212/623208/623240/623234/623187/623235/623417/623415/623
AAEO224324:0:Tyes--------0
AAVE397945:0:Tyes-260-2627262829802981
ABAC204669:0:Tyes----2755--10
ABAU360910:0:Tyes35834034333835836536401
ABOR393595:0:Tyes26001-724231918
ABUT367737:0:Tyes6530--653----
ACAU438753:0:Tyes0---1408--10681067
ACEL351607:0:Tyes--------0
ACRY349163:8:Tyes114650-0---2081-
ADEH290397:0:Tyes0------1615-
AEHR187272:0:Tyes61311146013435
AFER243159:0:Tyes-2791382792-2762273310
AHYD196024:0:Tyes9333532100156
ALAI441768:0:Tyes-------10
AMAR234826:0:Tyes---0-----
AMAR329726:9:Tyes--3614-2798-4057-0
AMET293826:0:Tyes-------01
ANAE240017:0:Tyes-------10
AORE350688:0:Tyes-------10
APHA212042:0:Tyes---0-----
APLE416269:0:Tyes698694692695141565710
APLE434271:0:Tno718714712715144535410
ASAL382245:5:Tyes252032434332928
ASP232721:2:Tyes15612412912215616516410
ASP62928:0:Tyes2574260257415915819901991
ASP62977:0:Tyes18012404024056572186218521842183
ASP76114:2:Tyes118272520521118913313401
AVAR240292:3:Tyes--0---4440-128
AYEL322098:4:Tyes-------0-
BABO262698:1:Tno0---559-219171172
BAFZ390236:2:Fyes-------0-
BAMB339670:3:Tno23260232928252251
BAMB398577:3:Tno23260232928260259
BAMY326423:0:Tyes-------10
BANT260799:0:Tno-------10
BANT261594:2:Tno-------10
BANT568206:2:Tyes-------10
BANT592021:2:Tno-------10
BAPH198804:0:Tyes0-151----156157
BAPH372461:0:Tyes--0----45
BBAC264462:0:Tyes--7552700--25420-
BBAC360095:0:Tyes0---271--436435
BBRO257310:0:Tyes0111411171112113311401139622623
BBUR224326:21:Fno-------0-
BCAN483179:1:Tno0---590-223172173
BCEN331271:2:Tno250025212517252325002494249510
BCEN331272:3:Tyes23260232928263262
BCER226900:1:Tyes-------10
BCER288681:0:Tno-------10
BCER315749:1:Tyes-------10
BCER405917:1:Tyes-------10
BCER572264:1:Tno-------10
BCIC186490:0:Tyes2-0-2--54
BCLA66692:0:Tyes-------10
BFRA272559:1:Tyes----0----
BFRA295405:0:Tno----0----
BGAR290434:2:Fyes-------0-
BHAL272558:0:Tyes-------10
BHEN283166:0:Tyes0---512--287288
BHER314723:0:Fyes-------0-
BJAP224911:0:Fyes915---915-0640641
BLIC279010:0:Tyes-------10
BLON206672:0:Tyes-------0-
BMAL243160:1:Tno32634834335032632032110
BMAL320388:1:Tno293329112915290929332939293810
BMAL320389:1:Tyes22724924525122722122210
BMEL224914:1:Tno561---0-350396395
BMEL359391:1:Tno0---538-210166167
BOVI236:1:Tyes0---513--165166
BPAR257311:0:Tno0941944939960967966585586
BPER257313:0:Tyes193931633165316170124222423
BPET94624:0:Tyes7262328701477476
BPSE272560:1:Tyes21523623223821520921001
BPSE320372:1:Tno27529629229827526927001
BPSE320373:1:Tno26828928529126826226301
BPUM315750:0:Tyes-------10
BQUI283165:0:Tyes0---359--237236
BSP107806:2:Tyes0-153-0--158159
BSP36773:2:Tyes23260232928257256
BSP376:0:Tyes0---1859-8011465-
BSUB:0:Tyes-------10
BSUI204722:1:Tyes0---586-226178179
BSUI470137:1:Tno0---600-232181182
BTHA271848:1:Tno170417251721172717041698169910
BTHE226186:0:Tyes----0----
BTHU281309:1:Tno-------10
BTHU412694:1:Tno-------10
BTRI382640:1:Tyes0------695694
BTUR314724:0:Fyes-------0-
BVIE269482:7:Tyes23260232928251250
BWEI315730:4:Tyes-------10
BXEN266265:0:Tyes------0--
BXEN266265:1:Tyes-0-------
CABO218497:0:Tyes0--------
CACE272562:1:Tyes-------01
CAULO:0:Tyes1406--2353--11250-
CBEI290402:0:Tyes-------0-
CBLO203907:0:Tyes2-0-2--54
CBLO291272:0:Tno2-0-2--54
CBOT36826:1:Tno-------01
CBOT441770:0:Tyes-------01
CBOT441771:0:Tno-------01
CBOT441772:1:Tno-------01
CBOT498213:1:Tno-------01
CBOT508765:1:Tyes-------10
CBOT515621:2:Tyes-------01
CBOT536232:0:Tno-------01
CBUR227377:1:Tyes169-0--1117111811191120
CBUR360115:1:Tno460-0--1167116811691170
CBUR434922:2:Tno494-1175--3210
CCAV227941:1:Tyes0--------
CCHL340177:0:Tyes0-------1160
CCON360104:2:Tyes--------0
CDES477974:0:Tyes-------0-
CDIF272563:1:Tyes-------10
CFEL264202:1:Tyes0--------
CHOM360107:1:Tyes-0-------
CHUT269798:0:Tyes--------0
CHYD246194:0:Tyes----0--21572158
CJAP155077:0:Tyes0211210-205196-199200
CJEJ192222:0:Tyes0147-------
CJEJ195099:0:Tno0197-------
CJEJ354242:2:Tyes0128-------
CJEJ360109:0:Tyes2050-------
CJEJ407148:0:Tno0122-------
CKLU431943:1:Tyes-------10
CMUR243161:1:Tyes0--------
CNOV386415:0:Tyes-------10
CPEL335992:0:Tyes-0-------
CPER195102:1:Tyes-------0-
CPER195103:0:Tno-------0-
CPER289380:3:Tyes-------0-
CPHY357809:0:Tyes-------01
CPNE115711:1:Tyes0--------
CPNE115713:0:Tno0--------
CPNE138677:0:Tno0--------
CPNE182082:0:Tno0--------
CPRO264201:0:Fyes0---0---472
CPSY167879:0:Tyes0186184187189909596
CRUT413404:0:Tyes--115---0870871
CSAL290398:0:Tyes713111470123
CSP501479:5:Fyes------0--
CSP501479:7:Fyes-0-------
CSP501479:8:Fyes---0---1605-
CSP78:2:Tyes23470-1--18791463-
CTEP194439:0:Tyes0---0---331
CTET212717:0:Tyes-------01
CTRA471472:0:Tyes0--------
CTRA471473:0:Tno0--------
CVES412965:0:Tyes-523---01800801
CVIO243365:0:Tyes-708-3663366433483349
DARO159087:0:Tyes2743277027662772274317217110
DDES207559:0:Tyes-1-0---316315
DGEO319795:1:Tyes--------0
DHAF138119:0:Tyes----3566--10
DNOD246195:0:Tyes476-7-01267266
DOLE96561:0:Tyes18861342--1886---0
DPSY177439:2:Tyes0--15660---589
DRED349161:0:Tyes----509--10
DSHI398580:3:Tyes0--------
DSHI398580:5:Tyes-0-1270---14831484
DVUL882:1:Tyes2250-1---12681267
ECAN269484:0:Tyes---0-----
ECAR218491:0:Tyes613051211109
ECHA205920:0:Tyes---0-----
ECOL199310:0:Tno414054233343637
ECOL316407:0:Tno452034639404142
ECOL331111:6:Tno414054235363738
ECOL362663:0:Tno382033931323435
ECOL364106:1:Tno414054233343637
ECOL405955:2:Tyes351023629303132
ECOL409438:6:Tyes392034033343536
ECOL413997:0:Tno392034033343536
ECOL439855:4:Tno442034537384041
ECOL469008:0:Tno138403707654
ECOL481805:0:Tno137393607654
ECOL585034:0:Tno392034033343536
ECOL585035:0:Tno372033831323334
ECOL585055:0:Tno392034033343536
ECOL585056:2:Tno392034033343536
ECOL585057:0:Tno402034133343637
ECOL585397:0:Tno372033831323334
ECOL83334:0:Tno382033932333435
ECOLI:0:Tno452034639404142
ECOO157:0:Tno382033932333435
EFAE226185:3:Tyes-------0-
EFER585054:1:Tyes392034032333536
ELIT314225:0:Tyes-------10
ERUM254945:0:Tyes---0-----
ERUM302409:0:Tno---0-----
ESP42895:1:Tyes432034437383940
FJOH376686:0:Tyes----0----
FMAG334413:1:Tyes-------0-
FNOD381764:0:Tyes-------0-
FNUC190304:0:Tyes-------0-
FPHI484022:1:Tyes-222224221-1155011571158
FRANT:0:Tno-10721074--7500748747
FSP106370:0:Tyes--------0
FSUC59374:0:Tyes--------0
FTUL351581:0:Tno-203-584959586587
FTUL393011:0:Tno-203-536861538539
FTUL393115:0:Tyes-10531055--7450743742
FTUL401614:0:Tyes-203-961224959958
FTUL418136:0:Tno-203-2151076217218
FTUL458234:0:Tno-203-554887556557
GBET391165:0:Tyes12860-1531---762-
GFOR411154:0:Tyes0--------
GKAU235909:1:Tyes-------10
GMET269799:1:Tyes2841182-184413--10
GOXY290633:5:Tyes345297-662971--0-
GSUL243231:0:Tyes0--7300--27812782
GTHE420246:1:Tyes-------10
GURA351605:0:Tyes32362-03236--98
GVIO251221:0:Tyes--2552---0--
HACI382638:1:Tyes0---0----
HARS204773:0:Tyes265926792675268126592651265210
HCHE349521:0:Tyes0-4038404140324608460946134614
HDUC233412:0:Tyes62039591027102610871088
HHAL349124:0:Tyes3542404335303101
HHEP235279:0:Tyes0---0----
HINF281310:0:Tyes6861091071100501500499498
HINF374930:0:Tyes0449451448552131132133134
HINF71421:0:Tno3051331311340483484485486
HMOD498761:0:Tyes----0--430429
HNEP81032:0:Tyes0--9221307-1060984985
HPY:0:Tno0---0----
HPYL357544:1:Tyes0---0----
HPYL85963:0:Tno0---0----
HSOM205914:1:Tyes644204184212993210
HSOM228400:0:Tno643703683713153210
ILOI283942:0:Tyes613051514109
JSP290400:1:Tyes---1299--0998-
JSP375286:0:Tyes302030403036304230203012301310
KPNE272620:2:Tyes332033427282930
KRAD266940:2:Fyes--------0
LACI272621:0:Tyes-------0-
LBIF355278:2:Tyes------91-0
LBIF456481:2:Tno------94-0
LBOR355276:1:Tyes----0----
LBOR355277:1:Tno----0----
LBRE387344:2:Tyes-------01
LCHO395495:0:Tyes676248265524846761025432544
LDEL321956:0:Tyes-------0-
LDEL390333:0:Tyes-------10
LGAS324831:0:Tyes--------0
LHEL405566:0:Tyes-------0-
LINN272626:1:Tno-------01
LINT189518:1:Tyes--------0
LINT267671:1:Tno--------0
LINT363253:3:Tyes113--0113--325324
LJOH257314:0:Tyes--------0
LLAC272622:5:Tyes-------01
LLAC272623:0:Tyes-------01
LMES203120:1:Tyes-------0-
LMON169963:0:Tno-------01
LMON265669:0:Tyes-------01
LPLA220668:0:Tyes-------10
LPNE272624:0:Tno4871304871854185518591860
LPNE297245:1:Fno4061304061751175217561757
LPNE297246:1:Fyes3811303811855185618601861
LPNE400673:0:Tno3111981197919823116510
LREU557436:0:Tyes-------01
LSAK314315:0:Tyes-------01
LSPH444177:1:Tyes-------0-
LWEL386043:0:Tyes-------01
LXYL281090:0:Tyes--------0
MABS561007:1:Tyes---0-----
MAER449447:0:Tyes--3112---0-3701
MAQU351348:2:Tyes0444442445-204205209210
MAVI243243:0:Tyes---0-----
MCAP243233:0:Tyes1967239601608196715991600598597
MEXT419610:0:Tyes2222-0-3820--26212620
MFLA265072:0:Tyes20618518918420620920810
MLOT266835:2:Tyes6063---207-066606661
MMAG342108:0:Tyes1376136906271365-182614401441
MMAR394221:0:Tyes822---1648-013921393
MPET420662:1:Tyes1622620226416252423212322
MSME246196:0:Tyes---0-----
MSP266779:3:Tyes0---765--270271
MSP400668:0:Tyes0-1331133313261319132013211322
MSP409:2:Tyes5647-0---484544014402
MSUC221988:0:Tyes0734732735387288289290291
MTBCDC:0:Tno---0-----
MTBRV:0:Tno---0-----
MTHE264732:0:Tyes-------01
MTUB336982:0:Tno---0-----
MTUB419947:0:Tyes---0-----
MVAN350058:0:Tyes---0-----
MXAN246197:0:Tyes964168022---19640-
NARO279238:0:Tyes46---46--01
NEUR228410:0:Tyes70615931589159470610680681
NEUT335283:2:Tyes91186908591134033910
NFAR247156:2:Tyes---4813----0
NGON242231:0:Tyes-1840183-19519410099
NHAM323097:2:Tyes0---0-842868869
NMEN122586:0:Tno500187901880-1868186919681969
NMEN122587:0:Tyes-2230222-234233117116
NMEN272831:0:Tno-1120412-01106107
NMEN374833:0:Tno-2360235-247246118117
NMUL323848:3:Tyes022152211221604864875051
NOCE323261:1:Tyes180024442055244618000124982497
NSP103690:6:Tyes--0---952-3427
NSP35761:1:Tyes---0-----
NSP387092:0:Tyes379--0----273
NWIN323098:0:Tyes1559---0-3223231
OANT439375:5:Tyes696---0-409522521
OCAR504832:0:Tyes0---427-474615614
OIHE221109:0:Tyes-------10
OTSU357244:0:Fyes---0-----
PACN267747:0:Tyes--------0
PAER208963:0:Tyes0286284287279261262266267
PAER208964:0:Tno037303728373137233704370537093710
PARC259536:0:Tyes--646-0153152301300
PAST100379:0:Tyes-------0-
PATL342610:0:Tyes053613173317431783179
PCAR338963:0:Tyes25172-02517--14631464
PCRY335284:1:Tyes--1076-0468467629628
PENT384676:0:Tyes300113032253206320732113212
PFLU205922:0:Tyes503130103867386838723873
PFLU216595:1:Tyes-132134131087868281
PFLU220664:0:Tyes523-30104094409540994100
PGIN242619:0:Tyes0--------
PHAL326442:1:Tyes10151316110156
PING357804:0:Tyes017121710171317081699170017041705
PINT246198:1:Tyes----0----
PLUM243265:0:Fyes6191720100123
PLUT319225:0:Tyes1037---1037---0
PMAR146891:0:Tyes--0-----523
PMAR167539:0:Tyes--0-----611
PMAR167540:0:Tyes--0-----433
PMAR167542:0:Tyes--0-----524
PMAR167546:0:Tyes--------0
PMAR167555:0:Tyes--------0
PMAR59920:0:Tno--------0
PMAR74546:0:Tyes--0-----519
PMAR74547:0:Tyes--0-----683
PMAR93060:0:Tyes--0-----568
PMEN399739:0:Tyes605-301029282423
PMOB403833:0:Tyes0------771-
PMUL272843:1:Tyes558130572347346345344
PNAP365044:8:Tyes20718719118520721521410
PPEN278197:0:Tyes-------01
PPRO298386:2:Tyes9141215100156
PPUT160488:0:Tno468130340360359355354
PPUT351746:0:Tyes331113034423423342434283429
PPUT76869:0:Tno344313036133593359435983599
PSP117:0:Tyes0---0--5100-
PSP296591:2:Tyes2226022302932933294
PSP312153:0:Tyes2426024302918071808
PSP56811:2:Tyes--0-1087298299303304
PSTU379731:0:Tyes186-40928272322
PSYR205918:0:Tyes13211922130123
PSYR223283:2:Tyes12211922120123
PTHE370438:0:Tyes-------10
RAKA293614:0:Fyes-0-974---193-
RBEL336407:0:Tyes---146---0-
RBEL391896:0:Fno---0---129-
RCAN293613:0:Fyes-0-135---180-
RCAS383372:0:Tyes-------01
RCON272944:0:Tno-0-1009---197-
RDEN375451:4:Tyes---224--9770-
RETL347834:5:Tyes0-----1124276277
REUT264198:3:Tyes265126732669267526512644264510
REUT381666:2:Tyes283728592855286128372830283110
RFEL315456:2:Tyes-0-108---941-
RFER338969:1:Tyes223813422222221622382247224610
RLEG216596:6:Tyes211---141-108601
RMAS416276:1:Tyes-0-738-----
RMET266264:2:Tyes280928312827283328092802280310
RPAL258594:0:Tyes455---455-39110
RPAL316055:0:Tyes693---693-55510
RPAL316056:0:Tyes722---722-64110
RPAL316057:0:Tyes454------10
RPAL316058:0:Tyes1424---1424-017761775
RPOM246200:1:Tyes6072663-0--2207672-
RPRO272947:0:Tyes---480---0-
RRIC392021:0:Fno---782---0-
RRIC452659:0:Tyes---805---0-
RRUB269796:1:Tyes01499-24092630-315921222123
RSOL267608:1:Tyes249525212517252324952488248910
RSP101510:3:Fyes---0----1470
RSP357808:0:Tyes-------01
RSPH272943:3:Tyes0--------
RSPH272943:4:Tyes-898-181---01
RSPH349101:1:Tno0--------
RSPH349101:2:Tno-905-178--116401
RSPH349102:4:Tyes0--------
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