CANDIDATE ID: 166

CANDIDATE ID: 166

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9938072e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.1111111e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6778 (ddpD) (b1484)
   Products of gene:
     - YDDP-MONOMER (YddP)
     - ABC-59-CPLX (YddO/YddP/YddQ/YddR/YddS ABC transporter)

- G6777 (ddpF) (b1483)
   Products of gene:
     - YDDO-MONOMER (YddO)
     - ABC-59-CPLX (YddO/YddP/YddQ/YddR/YddS ABC transporter)

- EG12628 (dppF) (b3540)
   Products of gene:
     - DPPF-MONOMER (DppF)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG12627 (dppD) (b3541)
   Products of gene:
     - DPPD-MONOMER (DppD)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG12305 (sapF) (b1290)
   Products of gene:
     - SAPF-MONOMER (SapF)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG12304 (sapD) (b1291)
   Products of gene:
     - SAPD-MONOMER (SapD)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG12079 (nikE) (b3480)
   Products of gene:
     - NIKE-MONOMER (NikE)
     - ABC-20-CPLX (nickel ABC transporter)
       Reactions:
        Ni2+[periplasmic space] + ATP + H2O  ->  Ni2+[cytosol] + ADP + phosphate

- EG10678 (oppF) (b1247)
   Products of gene:
     - OPPF-MONOMER (OppF)
     - CPLX0-3970 (murein tripeptide ABC transporter)
       Reactions:
        ATP + L-Ala-D-Glu-meso-A2pm[periplasmic space] + H2O  ->  L-Ala-D-Glu-meso-A2pm[cytosol] + ADP + phosphate
     - ABC-22-CPLX (oligopeptide ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG10677 (oppD) (b1246)
   Products of gene:
     - OPPD-MONOMER (OppD)
     - CPLX0-3970 (murein tripeptide ABC transporter)
       Reactions:
        ATP + L-Ala-D-Glu-meso-A2pm[periplasmic space] + H2O  ->  L-Ala-D-Glu-meso-A2pm[cytosol] + ADP + phosphate
     - ABC-22-CPLX (oligopeptide ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 151
Effective number of orgs (counting one per cluster within 468 clusters): 96

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
VVUL216895 ncbi Vibrio vulnificus CMCP69
VVUL196600 ncbi Vibrio vulnificus YJ0169
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106339
VFIS312309 ncbi Vibrio fischeri ES1149
VEIS391735 ncbi Verminephrobacter eiseniae EF01-29
VCHO345073 ncbi Vibrio cholerae O3959
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169619
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB48
TSP28240 Thermotoga sp.8
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332238
TPET390874 ncbi Thermotoga petrophila RKU-18
TMAR243274 ncbi Thermotoga maritima MSB88
TLET416591 ncbi Thermotoga lettingae TMO8
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
STRO369723 ncbi Salinispora tropica CNB-4409
STHE292459 ncbi Symbiobacterium thermophilum IAM 148639
SSP644076 Silicibacter sp. TrichCH4B9
SSON300269 ncbi Shigella sonnei Ss0469
SPRO399741 ncbi Serratia proteamaculans 5689
SMEL266834 ncbi Sinorhizobium meliloti 10219
SMED366394 ncbi Sinorhizobium medicae WSM4199
SLAC55218 Ruegeria lacuscaerulensis8
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SGLO343509 ncbi Sodalis glossinidius morsitans9
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1979
SCO ncbi Streptomyces coelicolor A3(2)9
SBOY300268 ncbi Shigella boydii Sb2279
SAVE227882 ncbi Streptomyces avermitilis MA-46808
SARE391037 ncbi Salinispora arenicola CNS-2059
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170298
RSP357808 ncbi Roseiflexus sp. RS-18
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111709
RMET266264 ncbi Ralstonia metallidurans CH348
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38419
REUT381666 ncbi Ralstonia eutropha H169
RETL347834 ncbi Rhizobium etli CFN 429
RCAS383372 ncbi Roseiflexus castenholzii DSM 139418
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a8
PSP56811 Psychrobacter sp.9
PSP296591 ncbi Polaromonas sp. JS6668
PPRO298386 ncbi Photobacterium profundum SS99
PMUL272843 ncbi Pasteurella multocida multocida Pm709
PMOB403833 ncbi Petrotoga mobilis SJ958
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO18
PFLU220664 ncbi Pseudomonas fluorescens Pf-58
PFLU216595 ncbi Pseudomonas fluorescens SBW258
OIHE221109 ncbi Oceanobacillus iheyensis HTE8319
OCAR504832 ncbi Oligotropha carboxidovorans OM58
MSP400668 ncbi Marinomonas sp. MWYL19
MSP266779 ncbi Chelativorans sp. BNC18
MSME246196 ncbi Mycobacterium smegmatis MC2 1559
MLOT266835 ncbi Mesorhizobium loti MAFF3030999
LSPH444177 ncbi Lysinibacillus sphaericus C3-419
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785789
JSP290400 ncbi Jannaschia sp. CCS18
HMUK485914 ncbi Halomicrobium mukohataei DSM 122868
HINF71421 ncbi Haemophilus influenzae Rd KW209
HINF374930 ncbi Haemophilus influenzae PittEE9
HINF281310 ncbi Haemophilus influenzae 86-028NP9
HCHE349521 ncbi Hahella chejuensis KCTC 23968
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237798
GURA351605 ncbi Geobacter uraniireducens Rf48
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-29
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B19
ESP42895 Enterobacter sp.9
EFER585054 ncbi Escherichia fergusonii ATCC 354699
ECOO157 ncbi Escherichia coli O157:H7 EDL9339
ECOL83334 Escherichia coli O157:H79
ECOL585397 ncbi Escherichia coli ED1a9
ECOL585057 ncbi Escherichia coli IAI399
ECOL585056 ncbi Escherichia coli UMN0269
ECOL585055 ncbi Escherichia coli 559899
ECOL585035 ncbi Escherichia coli S889
ECOL585034 ncbi Escherichia coli IAI19
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL469008 ncbi Escherichia coli BL21(DE3)9
ECOL439855 ncbi Escherichia coli SMS-3-59
ECOL413997 ncbi Escherichia coli B str. REL6069
ECOL409438 ncbi Escherichia coli SE119
ECOL405955 ncbi Escherichia coli APEC O19
ECOL364106 ncbi Escherichia coli UTI899
ECOL362663 ncbi Escherichia coli 5369
ECOL331111 ncbi Escherichia coli E24377A9
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
ECOL199310 ncbi Escherichia coli CFT0739
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10439
DHAF138119 ncbi Desulfitobacterium hafniense Y518
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G208
CVIO243365 ncbi Chromobacterium violaceum ATCC 124729
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29019
CACE272562 ncbi Clostridium acetobutylicum ATCC 8249
BWEI315730 ncbi Bacillus weihenstephanensis KBAB49
BVIE269482 ncbi Burkholderia vietnamiensis G48
BTHU412694 ncbi Bacillus thuringiensis Al Hakam9
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-279
BTHA271848 ncbi Burkholderia thailandensis E2648
BSUI470137 ncbi Brucella suis ATCC 234458
BSUI204722 ncbi Brucella suis 13308
BSUB ncbi Bacillus subtilis subtilis 1689
BSP376 Bradyrhizobium sp.9
BSP36773 Burkholderia sp.8
BPUM315750 ncbi Bacillus pumilus SAFR-0329
BPSE320373 ncbi Burkholderia pseudomallei 6688
BPSE320372 ncbi Burkholderia pseudomallei 1710b8
BPSE272560 ncbi Burkholderia pseudomallei K962438
BPET94624 Bordetella petrii9
BMEL359391 ncbi Brucella melitensis biovar Abortus 23089
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M9
BMAL320389 ncbi Burkholderia mallei NCTC 102478
BMAL320388 ncbi Burkholderia mallei SAVP18
BMAL243160 ncbi Burkholderia mallei ATCC 233448
BLIC279010 ncbi Bacillus licheniformis ATCC 145808
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1109
BHAL272558 ncbi Bacillus halodurans C-1259
BCLA66692 ncbi Bacillus clausii KSM-K169
BCER572264 ncbi Bacillus cereus 03BB1029
BCER405917 Bacillus cereus W9
BCER315749 ncbi Bacillus cytotoxicus NVH 391-989
BCER288681 ncbi Bacillus cereus E33L9
BCEN331272 ncbi Burkholderia cenocepacia HI24248
BCEN331271 ncbi Burkholderia cenocepacia AU 10548
BCAN483179 ncbi Brucella canis ATCC 233659
BANT592021 ncbi Bacillus anthracis A02489
BANT568206 ncbi Bacillus anthracis CDC 6849
BANT261594 ncbi Bacillus anthracis Ames Ancestor9
BANT260799 ncbi Bacillus anthracis Sterne8
BAMY326423 ncbi Bacillus amyloliquefaciens FZB429
BAMB398577 ncbi Burkholderia ambifaria MC40-68
BAMB339670 ncbi Burkholderia ambifaria AMMD8
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9419
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4499
AMET293826 ncbi Alkaliphilus metalliredigens QYMF8
AHYD196024 Aeromonas hydrophila dhakensis9
ACAU438753 ncbi Azorhizobium caulinodans ORS 5719
ABAU360910 ncbi Bordetella avium 197N8


Names of the homologs of the genes in the group in each of these orgs
  G6778   G6777   EG12628   EG12627   EG12305   EG12304   EG12079   EG10678   EG10677   
YPSE349747 YPSIP31758_1957YPSIP31758_4071YPSIP31758_4072YPSIP31758_1780YPSIP31758_1781YPSIP31758_1956YPSIP31758_1956YPSIP31758_1957
YPSE273123 YPTB2108YPTB3838YPTB3839YPTB2276YPTB2275YPTB2109YPTB2109YPTB2108
YPES386656 YPDSF_0951YPDSF_3365YPDSF_3366YPDSF_0784YPDSF_0785YPDSF_0950YPDSF_0950YPDSF_0951
YPES377628 YPN_1651YPN_3648YPN_3649YPN_1819YPN_1818YPN_1652YPN_1652YPN_1651
YPES360102 YPA_1542YPA_3826YPA_3827YPA_1708YPA_1707YPA_1543YPA_1543YPA_1542
YPES349746 YPANGOLA_A2160YPANGOLA_A4060YPANGOLA_A4059YPANGOLA_A2544YPANGOLA_A2543YPANGOLA_A2159YPANGOLA_A2159YPANGOLA_A2160
YPES214092 YPO2185YPO3999YPO4000YPO2359YPO2358YPO2186YPO2186YPO2185
YPES187410 Y2029Y3830Y3829Y1973Y1974Y2030Y2030Y2029
YENT393305 YE2230YE4079YE4080YE2129YE2128YE2229YE2229YE2230
VVUL216895 VV1_3079VV1_3078VV1_3078VV1_3079VV1_2885VV1_2884VV1_3078VV1_3078VV1_3079
VVUL196600 VV1206VV1207VV1207VV1206VV1386VV1387VV1207VV1207VV1206
VPAR223926 VP2088VP1343VP1343VP1344VP1167VP1168VP2087VP2087VP2088
VFIS312309 VF1594VF0692VF1593VF0691VFA0305VFA0306VF1593VF1593VF1594
VEIS391735 VEIS_4118VEIS_4117VEIS_4962VEIS_1298VEIS_4251VEIS_4963VEIS_2005VEIS_4962VEIS_4963
VCHO345073 VC0395_A0612VC0395_A0613VC0395_A0613VC0395_A0612VC0395_A1289VC0395_A1288VC0395_A0613VC0395_A0613VC0395_A0612
VCHO VC1094VC1095VC1095VC1094VC1684VC1683VC1095VC1095VC1094
TTEN273068 TTE2525TTE2526TTE2526TTE2525TTE0615TTE2525TTE0615TTE0614
TSP28240 TRQ2_0434TRQ2_0889TRQ2_1075TRQ2_0434TRQ2_0889TRQ2_1076TRQ2_1075TRQ2_0437
TPSE340099 TETH39_0199TETH39_0198TETH39_0198TETH39_0199TETH39_0198TETH39_0199TETH39_1685TETH39_1686
TPET390874 TPET_0419TPET_0867TPET_0867TPET_0419TPET_0867TPET_1685TPET_0420TPET_0422
TMAR243274 TM_0501TM_1063TM_1750TM_0501TM_0057TM_1749TM_1750TM_0498
TLET416591 TLET_0199TLET_0644TLET_0644TLET_0648TLET_1503TLET_0648TLET_1527TLET_0645
STYP99287 STM1743STM3626STM3626STM3627STM1696STM1695STM1742STM1743
STRO369723 STROP_3820STROP_3819STROP_3819STROP_0219STROP_3819STROP_3820STROP_3819STROP_3819STROP_3820
STHE292459 STH2824STH2823STH1111STH2824STH1111STH1110STH1111STH2823STH2824
SSP644076 SCH4B_3701SCH4B_2892SCH4B_3702SCH4B_0504SCH4B_2892SCH4B_0504SCH4B_2892SCH4B_3702SCH4B_3701
SSON300269 SSO_1640SSO_1641SSO_3850SSO_3849SSO_1850SSO_1849SSO_3718SSO_1933SSO_1934
SPRO399741 SPRO_2350SPRO_2351SPRO_0142SPRO_0141SPRO_2633SPRO_2632SPRO_3154SPRO_2697SPRO_2698
SMEL266834 SMC02423SMC02424SMC00790SMA1371SMC00790SMA2081SMB20479SMA2079SMC03125
SMED366394 SMED_5789SMED_5788SMED_0333SMED_5064SMED_5077SMED_5789SMED_3644SMED_5658SMED_2856
SLAC55218 SL1157_0093SL1157_0093SL1157_0094SL1157_0093SL1157_0094SL1157_A0137SL1157_A0137SL1157_A0137
SHIGELLA S1874OPPFDPPFDPPDSAPFSAPDNIKEOPPFOPPD
SGLO343509 SG1376SG1377SG0064SG0063SG1512SG1511SG1377SG1377SG1376
SFLE373384 SFV_1737SFV_1738SFV_3547SFV_3546SFV_1304SFV_1305SFV_3483SFV_1259SFV_1258
SFLE198214 AAN43313.1AAN43314.1AAN45026.1AAN45027.1AAN42906.1AAN42907.1AAN44957.1AAN42861.1AAN42860.1
SENT454169 SEHA_C1934SEHA_C3946SEHA_C3946SEHA_C3947SEHA_C1882SEHA_C1881SEHA_C1933SEHA_C1934
SENT321314 SCH_1739SCH_3557SCH_3557SCH_3558SCH_1689SCH_1688SCH_1738SCH_1739
SENT295319 SPA1134SPA3483SPA3483SPA3484SPA1180SPA1181SPA1135SPA1134
SENT220341 STY1308STY4172STY4172STY4171STY1355STY1356STY1309STY1308
SENT209261 T1655T3889T3889T3888T1610T1609T1654T1655
SDYS300267 SDY_1304SDY_1611SDY_4563SDY_4564SDY_1377SDY_1378SDY_3635SDY_1305SDY_1304
SCO SCO5120SCO5480SCO5121SCO5120SCO5121SCO5120SCO7567SCO5121SCO5120
SBOY300268 SBO_1573SBO_1574SBO_3539SBO_3540SBO_1772SBO_1771SBO_3477SBO_1820SBO_1821
SAVE227882 SAV2765SAV2765SAV3146SAV3145SAV5609SAV3145SAV3145SAV3146
SARE391037 SARE_4781SARE_4209SARE_4209SARE_0258SARE_4209SARE_4210SARE_4209SARE_4209SARE_4210
RSPH349101 RSPH17029_4157RSPH17029_4158RSPH17029_3973RSPH17029_4157RSPH17029_3973RSPH17029_4157RSPH17029_3986RSPH17029_4158
RSP357808 ROSERS_0418ROSERS_2812ROSERS_0419ROSERS_0416ROSERS_2812ROSERS_0416ROSERS_0419ROSERS_0418
RRUB269796 RRU_A0589RRU_A2174RRU_A2360RRU_A2359RRU_A2360RRU_A2359RRU_A2273RRU_A0588RRU_A0589
RMET266264 RMET_5091RMET_4580RMET_4580RMET_5091RMET_4579RMET_1617RMET_4580RMET_4579
RLEG216596 PRL120430PRL100280RL0782RL0781RL0782RL0781PRL90105RL3547RL3546
REUT381666 H16_B1125H16_A1304H16_B0716H16_B1125H16_B2463H16_A1303H16_A2085H16_B0716H16_A1303
RETL347834 RHE_CH00605RHE_CH00740RHE_CH00740RHE_CH00739RHE_CH00740RHE_CH00739RHE_PE00093RHE_CH03100RHE_CH03099
RCAS383372 RCAS_1063RCAS_2420RCAS_1064RCAS_1061RCAS_2420RCAS_1061RCAS_1064RCAS_1063
PSYR205918 PSYR_4213PSYR_2263PSYR_4242PSYR_4241PSYR_4242PSYR_4241PSYR_2677PSYR_2540
PSP56811 PSYCPRWF_0024PSYCPRWF_1530PSYCPRWF_1530PSYCPRWF_1529PSYCPRWF_1530PSYCPRWF_1529PSYCPRWF_0025PSYCPRWF_0025PSYCPRWF_0024
PSP296591 BPRO_4338BPRO_4337BPRO_2815BPRO_2814BPRO_2815BPRO_2814BPRO_4390BPRO_0660
PPRO298386 PBPRA1134PBPRA1135PBPRA2934PBPRA2935PBPRA2445PBPRA2444PBPRA1135PBPRA1135PBPRA1134
PMUL272843 PM1907PM0240PM0240PM0239PM0915PM0914PM1906PM1906PM1907
PMOB403833 PMOB_1578PMOB_1325PMOB_1579PMOB_1578PMOB_1579PMOB_1578PMOB_1579PMOB_1578
PLUM243265 PLU2490PLU0304PLU0303PLU2591PLU2590PLU2489PLU2489PLU2490
PFLU220664 PFL_4027PFL_4028PFL_0874PFL_0875PFL_0874PFL_0875PFL_5624PFL_0874
PFLU216595 PFLU1634PFLU0819PFLU0819PFLU0820PFLU0819PFLU0820PFLU0819PFLU0819
OIHE221109 OB2453OB3070OB2452OB3069OB2614OB3069OB3070OB2963OB2968
OCAR504832 OCAR_7512OCAR_7522OCAR_7522OCAR_4431OCAR_4431OCAR_7522OCAR_7522OCAR_7522
MSP400668 MMWYL1_3821MMWYL1_1682MMWYL1_0110MMWYL1_0111MMWYL1_3820MMWYL1_0111MMWYL1_1682MMWYL1_4408MMWYL1_4407
MSP266779 MESO_3727MESO_3136MESO_0063MESO_0064MESO_0063MESO_2384MESO_3738MESO_3135
MSME246196 MSMEG_0640MSMEG_0639MSMEG_0639MSMEG_0640MSMEG_0639MSMEG_0640MSMEG_2844MSMEG_0639MSMEG_0640
MLOT266835 MLR6674MLR6675MLR5420MLR5419MLR5420MLL0596MLR1190MLL0595MLL0596
LSPH444177 BSPH_4261BSPH_4236BSPH_2217BSPH_4235BSPH_2217BSPH_0316BSPH_2973BSPH_2217BSPH_4261
KPNE272620 GKPORF_B1131GKPORF_B1329GKPORF_B3248GKPORF_B3249GKPORF_B0314GKPORF_B0315GKPORF_B3198GKPORF_B1329GKPORF_B1330
JSP290400 JANN_4131JANN_3293JANN_4132JANN_4131JANN_3293JANN_4131JANN_3054JANN_3053
HMUK485914 HMUK_0538HMUK_0537HMUK_0537HMUK_0538HMUK_0538HMUK_0218HMUK_0218HMUK_0538
HINF71421 HI_1121HI_1184HI_1184HI_1185HI_1642HI_1641HI_1120HI_1120HI_1121
HINF374930 CGSHIEE_06440CGSHIEE_06130CGSHIEE_06130CGSHIEE_06125CGSHIEE_05905CGSHIEE_05900CGSHIEE_06445CGSHIEE_06445CGSHIEE_06440
HINF281310 NTHI1287NTHI1353NTHI1353NTHI1354NTHI1397NTHI1398NTHI1286NTHI1286NTHI1287
HCHE349521 HCH_00011HCH_01830HCH_00699HCH_01831HCH_01831HCH_00010HCH_00699HCH_01130
HAUR316274 HAUR_1226HAUR_1227HAUR_3497HAUR_3498HAUR_3498HAUR_1227HAUR_1227HAUR_1226
GURA351605 GURA_1711GURA_1711GURA_1712GURA_1711GURA_1712GURA_1711GURA_1711GURA_1712
GTHE420246 GTNG_0476GTNG_0477GTNG_3281GTNG_3282GTNG_0477GTNG_3282GTNG_0477GTNG_0477GTNG_3282
FNOD381764 FNOD_0193FNOD_1565FNOD_1565FNOD_0193FNOD_0192FNOD_0193FNOD_1565FNOD_0192FNOD_0193
ESP42895 ENT638_2299ENT638_0752ENT638_0188ENT638_0187ENT638_2175ENT638_2174ENT638_1838ENT638_2298ENT638_2299
EFER585054 EFER_1709EFER_1708EFER_3537EFER_3538EFER_1664EFER_1663EFER_1708EFER_1708EFER_1709
ECOO157 Z2226Z2227DPPFDPPDSAPFSAPDNIKEOPPFOPPD
ECOL83334 ECS2088ECS2087ECS4420ECS4421ECS1867ECS1868ECS4347ECS1747ECS1746
ECOL585397 ECED1_1398ECED1_1399ECED1_4219ECED1_4220ECED1_1505ECED1_1506ECED1_4153ECED1_1399ECED1_1398
ECOL585057 ECIAI39_1748ECIAI39_1747ECIAI39_4049ECIAI39_4050ECIAI39_1641ECIAI39_1642ECIAI39_3961ECIAI39_1582ECIAI39_1581
ECOL585056 ECUMN_1738ECUMN_1737ECUMN_4050ECUMN_4051ECUMN_1595ECUMN_1596ECUMN_3961ECUMN_1544ECUMN_1543
ECOL585055 EC55989_1616EC55989_1615EC55989_3991EC55989_3992EC55989_1452EC55989_1453EC55989_3888EC55989_1344EC55989_1343
ECOL585035 ECS88_1314ECS88_1315ECS88_3960ECS88_3961ECS88_1436ECS88_1437ECS88_3883ECS88_1315ECS88_1314
ECOL585034 ECIAI1_1494ECIAI1_1493ECIAI1_3698ECIAI1_3699ECIAI1_1315ECIAI1_1316ECIAI1_3627ECIAI1_1266ECIAI1_1265
ECOL481805 ECOLC_2173ECOLC_2174ECOLC_0175ECOLC_0174ECOLC_2335ECOLC_2334ECOLC_0236ECOLC_2381ECOLC_2382
ECOL469008 ECBD_2155ECBD_2156ECBD_0196ECBD_0195ECBD_2327ECBD_2326ECBD_0261ECBD_2375ECBD_2376
ECOL439855 ECSMS35_1689ECSMS35_1690ECSMS35_3859ECSMS35_3860ECSMS35_1832ECSMS35_1831ECSMS35_3764ECSMS35_1893ECSMS35_1894
ECOL413997 ECB_01442ECB_01441ECB_03391ECB_03392ECB_01267ECB_01268ECB_03329ECB_01221ECB_01220
ECOL409438 ECSE_1574ECSE_1573ECSE_3813ECSE_3814ECSE_1342ECSE_1343ECSE_3748ECSE_1295ECSE_1294
ECOL405955 APECO1_361APECO1_362APECO1_2908APECO1_2907APECO1_453APECO1_454APECO1_2974APECO1_362APECO1_361
ECOL364106 UTI89_C1444UTI89_C1445UTI89_C4078UTI89_C4079UTI89_C1567UTI89_C1568UTI89_C3997UTI89_C1445UTI89_C1444
ECOL362663 ECP_1293ECP_1294ECP_3641ECP_3642ECP_1348ECP_1349ECP_3575ECP_1294ECP_1293
ECOL331111 ECE24377A_1673ECE24377A_1672ECE24377A_4032ECE24377A_4033ECE24377A_1497ECE24377A_1498ECE24377A_3964ECE24377A_1395ECE24377A_1394
ECOL316407 ECK1478:JW1479:B1484ECK1477:JW1478:B1483ECK3527:JW3509:B3540ECK3528:JW3510:B3541ECK1285:JW1283:B1290ECK1286:JW1284:B1291ECK3464:JW3445:B3480ECK1241:JW1239:B1247ECK1240:JW1238:B1246
ECOL199310 C1710C1711C4355C4356C1767C1768C4273C1711C1710
ECAR218491 ECA2321ECA2320ECA4390ECA4391ECA1973ECA1974ECA4390ECA2320ECA2321
DHAF138119 DSY0646DSY0647DSY0506DSY0505DSY0646DSY0506DSY0506DSY1863
DDES207559 DDE_1182DDE_1181DDE_1181DDE_1182DDE_1182DDE_0271DDE_1181DDE_1182
CVIO243365 CV_4326CV_1101CV_1101CV_1100CV_1101CV_1100CV_4325CV_4325CV_4326
CHYD246194 CHY_1126CHY_1127CHY_1127CHY_1126CHY_1127CHY_1126CHY_2360CHY_1127CHY_1126
CACE272562 CAC3636CAC3635CAC3635CAC0179CAC3641CAC3642CAC3641CAC3635CAC3636
BWEI315730 BCERKBAB4_0806BCERKBAB4_0807BCERKBAB4_0212BCERKBAB4_1092BCERKBAB4_0573BCERKBAB4_0574BCERKBAB4_0573BCERKBAB4_0807BCERKBAB4_1092
BVIE269482 BCEP1808_3126BCEP1808_3126BCEP1808_3127BCEP1808_3126BCEP1808_3127BCEP1808_3126BCEP1808_3702BCEP1808_3703
BTHU412694 BALH_0819BALH_0820BALH_0223BALH_1045BALH_0223BALH_0601BALH_0600BALH_0223BALH_1045
BTHU281309 BT9727_4234BT9727_0826BT9727_4235BT9727_4234BT9727_0570BT9727_0571BT9727_0570BT9727_4235BT9727_1086
BTHA271848 BTH_I0224BTH_I0224BTH_I0223BTH_I0224BTH_I0223BTH_II2215BTH_II2215BTH_II2216
BSUI470137 BSUIS_B0408BSUIS_A1638BSUIS_B1089BSUIS_A1638BSUIS_B1089BSUIS_B0792BSUIS_B0407BSUIS_B1075
BSUI204722 BR_A0405BR_1582BR_A1094BR_1582BR_A1094BR_A0800BR_A0404BR_A1079
BSUB BSU12950BSU11370BSU11370BSU11360BSU11370BSU11360BSU13000BSU13000BSU12950
BSP376 BRADO0909BRADO3023BRADO1739BRADO1740BRADO1739BRADO1740BRADO2919BRADO1097BRADO3022
BSP36773 BCEP18194_A6388BCEP18194_A6388BCEP18194_A6389BCEP18194_A6388BCEP18194_A6389BCEP18194_B0119BCEP18194_B0119BCEP18194_B0118
BPUM315750 BPUM_1187BPUM_1061BPUM_1061BPUM_1060BPUM_0820BPUM_1060BPUM_3066BPUM_1192BPUM_1187
BPSE320373 BURPS668_0247BURPS668_0247BURPS668_0246BURPS668_0247BURPS668_0246BURPS668_A3015BURPS668_A3015BURPS668_A3016
BPSE320372 BURPS1710B_A0465BURPS1710B_A0465BURPS1710B_A0464BURPS1710B_A0465BURPS1710B_A0464BURPS1710B_B1480BURPS1710B_B1480BURPS1710B_B1481
BPSE272560 BPSL0253BPSL0253BPSL0252BPSL0253BPSL0252BPSS2137BPSS2137BPSS2138
BPET94624 BPET2409BPET0286BPET0286BPET0285BPET3872BPET0285BPET3082BPET0286BPET5005
BMEL359391 BAB2_0817BAB2_1037BAB1_1596BAB2_1052BAB1_1596BAB2_1052BAB2_0438BAB2_1037BAB2_1038
BMEL224914 BMEII0863BMEII0223BMEI0438BMEII0206BMEI0438BMEII0206BMEII0491BMEII0864BMEII0222
BMAL320389 BMA10247_3374BMA10247_3374BMA10247_3375BMA10247_3374BMA10247_3375BMA10247_3374BMA10247_A0389BMA10247_A0388
BMAL320388 BMASAVP1_A2973BMASAVP1_A2973BMASAVP1_A2972BMASAVP1_A2973BMASAVP1_A2972BMASAVP1_A2973BMASAVP1_1538BMASAVP1_1537
BMAL243160 BMA_3305BMA_3305BMA_3304BMA_3305BMA_3304BMA_3305BMA_A0354.1BMA_A0354
BLIC279010 BL03769BL03317BL03317BL03044BL03044BL02422BL03763BL03769
BJAP224911 BLL7916BLL4892BLR1357BLR3344BLL6709BLR3344BLL2869BLR1357BLL0990
BHAL272558 BH3646BH3645BH3645BH0350BH3645BH0350BH0027BH0351BH0028
BCLA66692 ABC1238ABC2415ABC0568ABC3658ABC1606ABC0567ABC0029ABC3657ABC0567
BCER572264 BCA_0958BCA_0959BCA_0273BCA_1226BCA_0273BCA_0698BCA_0697BCA_0273BCA_1226
BCER405917 BCE_1003BCE_1004BCE_0252BCE_1303BCE_1004BCE_0728BCE_0727BCE_0252BCE_1303
BCER315749 BCER98_0222BCER98_0223BCER98_0223BCER98_0899BCER98_0554BCER98_0555BCER98_0900BCER98_0223BCER98_0899
BCER288681 BCE33L0810BCE33L0811BCE33L4247BCE33L4246BCE33L0213BCE33L0570BCE33L4247BCE33L4247BCE33L1080
BCEN331272 BCEN2424_3041BCEN2424_3041BCEN2424_3042BCEN2424_3041BCEN2424_3042BCEN2424_5538BCEN2424_5538BCEN2424_5539
BCEN331271 BCEN_2427BCEN_2427BCEN_2428BCEN_2427BCEN_2428BCEN_5322BCEN_5322BCEN_5321
BCAN483179 BCAN_B0408BCAN_B1101BCAN_A1617BCAN_B1116BCAN_A1617BCAN_B1116BCAN_B0814BCAN_B0407BCAN_B1102
BANT592021 BAA_0261BAA_1016BAA_4750BAA_4749BAA_0263BAA_0743BAA_4750BAA_4750BAA_1270
BANT568206 BAMEG_0260BAMEG_3649BAMEG_4769BAMEG_4768BAMEG_0261BAMEG_3927BAMEG_4769BAMEG_4769BAMEG_3394
BANT261594 GBAA0234GBAA0912GBAA4734GBAA4733GBAA0235GBAA0660GBAA4734GBAA4734GBAA1194
BANT260799 BAS0221BAS0863BAS4394BAS4393BAS0222BAS4394BAS4394BAS1104
BAMY326423 RBAM_011460RBAM_011370RBAM_011370RBAM_011360RBAM_011370RBAM_011360RBAM_011370RBAM_011370RBAM_012800
BAMB398577 BAMMC406_2952BAMMC406_2952BAMMC406_2953BAMMC406_2952BAMMC406_2953BAMMC406_2952BAMMC406_5409BAMMC406_5410
BAMB339670 BAMB_3086BAMB_3086BAMB_3087BAMB_3086BAMB_3087BAMB_3086BAMB_4862BAMB_4863
BABO262698 BRUAB2_0796BRUAB2_1018BRUAB1_1569BRUAB2_1033BRUAB1_1569BRUAB2_1033BRUAB2_0432BRUAB2_1018BRUAB2_1019
ASAL382245 ASA_1701ASA_0885ASA_1702ASA_0884ASA_2431ASA_2430ASA_0885ASA_1702ASA_1701
AMET293826 AMET_2912AMET_2911AMET_2905AMET_2064AMET_2064AMET_1135AMET_2065AMET_2912
AHYD196024 AHA_2610AHA_3428AHA_2609AHA_3429AHA_1872AHA_1873AHA_3428AHA_2609AHA_2610
ACAU438753 AZC_2908AZC_2907AZC_2011AZC_2012AZC_0808AZC_2908AZC_1868AZC_2011AZC_1983
ABAU360910 BAV2801BAV0997BAV2800BAV0998BAV0998BAV0498BAV0997BAV1561


Organism features enriched in list (features available for 140 out of the 151 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.008461436112
Disease:Anthrax 0.003217744
Disease:Brucellosis 0.000755855
Disease:Bubonic_plague 0.000176566
Disease:Dysentery 0.000176566
Disease:Gastroenteritis 0.00006541013
Endospores:No 1.302e-628211
Endospores:Yes 0.00006582553
GC_Content_Range4:0-40 2.314e-923213
GC_Content_Range4:40-60 5.414e-676224
GC_Content_Range7:30-40 0.000083123166
GC_Content_Range7:50-60 7.342e-746107
Genome_Size_Range5:0-2 1.719e-146155
Genome_Size_Range5:2-4 1.085e-821197
Genome_Size_Range5:4-6 3.421e-1887184
Genome_Size_Range5:6-10 1.069e-62647
Genome_Size_Range9:1-2 9.224e-116128
Genome_Size_Range9:2-3 9.799e-106120
Genome_Size_Range9:4-5 4.754e-74396
Genome_Size_Range9:5-6 4.586e-94488
Genome_Size_Range9:6-8 2.944e-62238
Gram_Stain:Gram_Neg 3.047e-7105333
Habitat:Multiple 0.008403653178
Motility:No 1.035e-714151
Motility:Yes 8.798e-891267
Oxygen_Req:Anaerobic 0.000147711102
Oxygen_Req:Facultative 1.656e-978201
Pathogenic_in:Animal 0.00304762566
Pathogenic_in:Human 0.002956664213
Shape:Coccus 1.081e-8282
Shape:Rod 4.177e-15121347
Shape:Spiral 0.0007440134



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 285
Effective number of orgs (counting one per cluster within 468 clusters): 222

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TTUR377629 ncbi Teredinibacter turnerae T79010
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1591
SGOR29390 Streptococcus gordonii Challis0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEG203122 ncbi Saccharophagus degradans 2-400
SAUR273036 ncbi Staphylococcus aureus RF1221
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PINT246198 Prevotella intermedia 170
PGIN242619 ncbi Porphyromonas gingivalis W830
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LCHO395495 ncbi Leptothrix cholodnii SP-60
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HARS204773 ncbi Herminiimonas arsenicoxydans1
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2001
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI30
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH721
APHA212042 ncbi Anaplasma phagocytophilum HZ0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G6778   G6777   EG12628   EG12627   EG12305   EG12304   EG12079   EG10678   EG10677   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TTUR377629
TPAL243276
TKOD69014 TK1801
TERY203124
TELO197221 TLL0443
TDEN326298
TCRU317025
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296 SSU98_1870
SSUI391295 SSU05_1866
SSP84588 SYNW2325OR0967
SSP64471 GSYN2857
SSP321332 CYB_0248
SSP321327 CYA_1893
SSP1148 SLL1927
SSP1131
SSOL273057
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007 SMU_258
SGOR29390
SELO269084
SDEG203122
SAUR273036 SAB0854
SALA317655
SAGA211110 GBS0147
SAGA208435 SAG_0151
SAGA205921 SAK_0209
SACI330779 SACI_1035
RTYP257363
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL316055
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSTU379731
PSP312153
PRUM264731
PPEN278197 PEPE_0399
PNAP365044
PMAR93060
PMAR74547 PMT2110
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616 PISL_0562
PINT246198
PGIN242619
PDIS435591
PAST100379
PARC259536
OTSU357244
NWIN323098
NSP387092
NSP103690 ALL4778
NSEN222891
NPHA348780 NP0766A
NOCE323261
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NEUT335283
NEUR228410 NE2480
NARO279238
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918 MKMS_4004
MSP164757 MJLS_3945
MSP164756 MMCS_3930
MSED399549 MSED_1049
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM3323
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610 MEXT_1280
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243 MAV_3418
MART243272
MAER449447 MAE_45960
MAEO419665
MABS561007
LXYL281090
LREU557436
LPNE400673 LPC_2602
LPNE297246 LPP0747
LPNE297245 LPL0728
LPNE272624 LPG0692
LMES203120
LINT363253 LI0988
LINT267671
LINT189518
LCHO395495
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621 LBA0202
IHOS453591
HMOD498761
HHEP235279
HHAL349124
HBUT415426 HBUT_0606
HARS204773 HEAR3291
GFOR411154
GBET391165
FTUL458234 FTA_1745
FTUL418136 FTW_0213
FTUL393011
FTUL351581 FTL_1648
FSUC59374
FSP106370
FJOH376686
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DNOD246195
DETH243164
CVES412965
CTRA471473
CTRA471472
CTET212717 CTC_01404
CSUL444179
CSP78
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948 CMAQ_1327
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164 CE2331
CDIP257309
CCUR360105 CCV52592_1324
CCON360104
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSP107806
BQUI283165
BLON206672
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBAC360095
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292 AVA_2045
AURANTIMONAS
ASP62977
ASP62928 AZO2061
APHA212042
AMAR329726
AMAR234826
ALAI441768
AFUL224325 AF_1770
AEHR187272
ADEH290397
ACRY349163
ABUT367737
ABOR393595
AAEO224324


Organism features enriched in list (features available for 268 out of the 285 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0003542117
Arrangment:Pairs 2.552e-728112
Disease:Pharyngitis 0.001883188
Disease:Wide_range_of_infections 0.00017301111
Disease:bronchitis_and_pneumonitis 0.001883188
Endospores:No 2.373e-7126211
Endospores:Yes 2.256e-10453
GC_Content_Range4:0-40 5.547e-9131213
GC_Content_Range4:40-60 0.001641987224
GC_Content_Range4:60-100 0.000229249145
GC_Content_Range7:0-30 0.00028823347
GC_Content_Range7:30-40 0.000025898166
GC_Content_Range7:50-60 0.000393634107
GC_Content_Range7:60-70 0.000347245134
Genome_Size_Range5:0-2 5.153e-24124155
Genome_Size_Range5:4-6 2.737e-1640184
Genome_Size_Range5:6-10 2.579e-6747
Genome_Size_Range9:0-1 3.661e-102727
Genome_Size_Range9:1-2 7.723e-1597128
Genome_Size_Range9:4-5 6.824e-82196
Genome_Size_Range9:5-6 2.056e-71988
Genome_Size_Range9:6-8 0.0000461638
Gram_Stain:Gram_Pos 0.005723257150
Habitat:Host-associated 1.252e-9129206
Habitat:Multiple 6.250e-658178
Habitat:Terrestrial 0.0000594431
Motility:No 3.473e-693151
Motility:Yes 1.331e-1085267
Optimal_temp.:- 0.0066159131257
Optimal_temp.:25-35 0.0019601114
Optimal_temp.:30-37 0.0001981118
Oxygen_Req:Aerobic 0.004945498185
Oxygen_Req:Facultative 1.988e-959201
Oxygen_Req:Microaerophilic 0.00444261418
Shape:Coccus 0.00129345082
Shape:Irregular_coccus 0.00766961317
Shape:Rod 5.300e-18109347
Shape:Sphere 6.472e-61819
Shape:Spiral 6.987e-62834



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 15
Effective number of orgs (counting one per cluster within 468 clusters): 14

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B1 8.786e-66549
HMUK485914 ncbi Halomicrobium mukohataei DSM 12286 0.00013635578
STRO369723 ncbi Salinispora tropica CNB-440 0.000593410429
SARE391037 ncbi Salinispora arenicola CNS-205 0.000704610629
TLET416591 ncbi Thermotoga lettingae TMO 0.00236697998
PMOB403833 ncbi Petrotoga mobilis SJ95 0.00241408018
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-2901 0.003070812509
TPET390874 ncbi Thermotoga petrophila RKU-1 0.00331678348
TMAR243274 ncbi Thermotoga maritima MSB8 0.00354218418
UMET351160 ncbi uncultured methanogenic archaeon RC-I 0.00446355657
TSP28240 Thermotoga sp. 0.00462348708
CACE272562 ncbi Clostridium acetobutylicum ATCC 824 0.004721413119
TDEN243275 ncbi Treponema denticola ATCC 35405 0.00628015947
LSPH444177 ncbi Lysinibacillus sphaericus C3-41 0.009525114179
MSME246196 ncbi Mycobacterium smegmatis MC2 155 0.009832814229


Names of the homologs of the genes in the group in each of these orgs
  G6778   G6777   EG12628   EG12627   EG12305   EG12304   EG12079   EG10678   EG10677   
FNOD381764 FNOD_0193FNOD_1565FNOD_1565FNOD_0193FNOD_0192FNOD_0193FNOD_1565FNOD_0192FNOD_0193
HMUK485914 HMUK_0538HMUK_0537HMUK_0537HMUK_0538HMUK_0538HMUK_0218HMUK_0218HMUK_0538
STRO369723 STROP_3820STROP_3819STROP_3819STROP_0219STROP_3819STROP_3820STROP_3819STROP_3819STROP_3820
SARE391037 SARE_4781SARE_4209SARE_4209SARE_0258SARE_4209SARE_4210SARE_4209SARE_4209SARE_4210
TLET416591 TLET_0199TLET_0644TLET_0644TLET_0648TLET_1503TLET_0648TLET_1527TLET_0645
PMOB403833 PMOB_1578PMOB_1325PMOB_1579PMOB_1578PMOB_1579PMOB_1578PMOB_1579PMOB_1578
CHYD246194 CHY_1126CHY_1127CHY_1127CHY_1126CHY_1127CHY_1126CHY_2360CHY_1127CHY_1126
TPET390874 TPET_0419TPET_0867TPET_0867TPET_0419TPET_0867TPET_1685TPET_0420TPET_0422
TMAR243274 TM_0501TM_1063TM_1750TM_0501TM_0057TM_1749TM_1750TM_0498
UMET351160 LRC380LRC381LRC381LRC381LRC380LRC381LRC380
TSP28240 TRQ2_0434TRQ2_0889TRQ2_1075TRQ2_0434TRQ2_0889TRQ2_1076TRQ2_1075TRQ2_0437
CACE272562 CAC3636CAC3635CAC3635CAC0179CAC3641CAC3642CAC3641CAC3635CAC3636
TDEN243275 TDE_1068TDE_1271TDE_1271TDE_1272TDE_1068TDE_1271TDE_1068
LSPH444177 BSPH_4261BSPH_4236BSPH_2217BSPH_4235BSPH_2217BSPH_0316BSPH_2973BSPH_2217BSPH_4261
MSME246196 MSMEG_0640MSMEG_0639MSMEG_0639MSMEG_0640MSMEG_0639MSMEG_0640MSMEG_2844MSMEG_0639MSMEG_0640


Organism features enriched in list (features available for 14 out of the 15 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:None 0.0069528558
Habitat:Specialized 0.0006545653
Optimal_temp.:80 0.001575923
Oxygen_Req:Anaerobic 0.00071188102
Pathogenic_in:No 0.002250311226
Temp._range:Hyperthermophilic 0.0013292423



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73640.5393
PWY-6196 (serine racemization)102740.4988
PWY-6374 (vibriobactin biosynthesis)77620.4932
GLUTAMINDEG-PWY (glutamine degradation I)1911020.4526
XYLCAT-PWY (xylose degradation I)2171100.4513
GALACTCAT-PWY (D-galactonate degradation)104690.4399
GLUTDEG-PWY (glutamate degradation II)1941010.4366
GLUCARDEG-PWY (D-glucarate degradation I)152850.4200
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149830.4117
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121720.4040
THREONINE-DEG2-PWY (threonine degradation II)2141030.4033



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6777   EG12628   EG12627   EG12305   EG12304   EG12079   EG10678   EG10677   
G67780.9996040.9993950.9993830.9987640.999180.9988240.999640.999742
G67770.9996620.9996860.9994030.9995690.999140.9995680.999503
EG126280.9998440.9994950.999670.9989860.9996810.999514
EG126270.999320.9997170.9989650.9995070.999484
EG123050.9997650.9987190.9990570.99881
EG123040.9987270.9994690.999439
EG120790.9994580.999173
EG106780.999843
EG10677



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PAIRWISE BLAST SCORES:

  G6778   G6777   EG12628   EG12627   EG12305   EG12304   EG12079   EG10678   EG10677   
G67780.0f0--1.3e-64----9.6e-69
G6777-0.0f06.2e-58----1.6e-59-
EG12628--0.0f0----1.3e-78-
EG12627---0.0f0----3.3e-59
EG12305--8.7e-52-0.0f0--2.8e-46-
EG123047.0e-50--2.1e-64-0.0f0---
EG12079------0.0f05.6e-41-
EG10678--2.3e-76----0.0f0-
EG10677--------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-3970 (murein tripeptide ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.222, average score: 1.000)
  Genes in pathway or complex:
             0.9941 0.9696 G6665 (mppA) G6665-MONOMER (periplasmic murein tripeptide binding protein)
   *in cand* 0.9996 0.9991 EG10678 (oppF) OPPF-MONOMER (OppF)
   *in cand* 0.9995 0.9988 EG10677 (oppD) OPPD-MONOMER (OppD)
             0.9979 0.9946 EG10676 (oppC) OPPC-MONOMER (OppC)
             0.9984 0.9962 EG10675 (oppB) OPPB-MONOMER (OppB)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9991 0.9987 EG12079 (nikE) NIKE-MONOMER (NikE)
   *in cand* 0.9995 0.9987 EG12304 (sapD) SAPD-MONOMER (SapD)
   *in cand* 0.9993 0.9987 EG12305 (sapF) SAPF-MONOMER (SapF)
   *in cand* 0.9995 0.9990 EG12627 (dppD) DPPD-MONOMER (DppD)
   *in cand* 0.9996 0.9990 EG12628 (dppF) DPPF-MONOMER (DppF)
   *in cand* 0.9996 0.9991 G6777 (ddpF) YDDO-MONOMER (YddO)
   *in cand* 0.9994 0.9988 G6778 (ddpD) YDDP-MONOMER (YddP)

- ABC-22-CPLX (oligopeptide ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.222, average score: 1.000)
  Genes in pathway or complex:
             0.9945 0.9753 EG10674 (oppA) OPPA-MONOMER (OppA-oligopeptide ABC transporter substrate-binding)
             0.9984 0.9962 EG10675 (oppB) OPPB-MONOMER (OppB)
   *in cand* 0.9996 0.9991 EG10678 (oppF) OPPF-MONOMER (OppF)
   *in cand* 0.9995 0.9988 EG10677 (oppD) OPPD-MONOMER (OppD)
             0.9979 0.9946 EG10676 (oppC) OPPC-MONOMER (OppC)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9991 0.9987 EG12079 (nikE) NIKE-MONOMER (NikE)
   *in cand* 0.9995 0.9987 EG12304 (sapD) SAPD-MONOMER (SapD)
   *in cand* 0.9993 0.9987 EG12305 (sapF) SAPF-MONOMER (SapF)
   *in cand* 0.9995 0.9990 EG12627 (dppD) DPPD-MONOMER (DppD)
   *in cand* 0.9996 0.9990 EG12628 (dppF) DPPF-MONOMER (DppF)
   *in cand* 0.9996 0.9991 G6777 (ddpF) YDDO-MONOMER (YddO)
   *in cand* 0.9994 0.9988 G6778 (ddpD) YDDP-MONOMER (YddP)

- ABC-8-CPLX (dipeptide ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.222, average score: 1.000)
  Genes in pathway or complex:
             0.9950 0.9701 EG10248 (dppA) DPPA-MONOMER (DppA)
             0.9912 0.9334 EG12626 (dppC) DPPC-MONOMER (DppC)
             0.9969 0.9825 EG12625 (dppB) DPPB-MONOMER (DppB)
   *in cand* 0.9996 0.9990 EG12628 (dppF) DPPF-MONOMER (DppF)
   *in cand* 0.9995 0.9990 EG12627 (dppD) DPPD-MONOMER (DppD)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9988 EG10677 (oppD) OPPD-MONOMER (OppD)
   *in cand* 0.9996 0.9991 EG10678 (oppF) OPPF-MONOMER (OppF)
   *in cand* 0.9991 0.9987 EG12079 (nikE) NIKE-MONOMER (NikE)
   *in cand* 0.9995 0.9987 EG12304 (sapD) SAPD-MONOMER (SapD)
   *in cand* 0.9993 0.9987 EG12305 (sapF) SAPF-MONOMER (SapF)
   *in cand* 0.9996 0.9991 G6777 (ddpF) YDDO-MONOMER (YddO)
   *in cand* 0.9994 0.9988 G6778 (ddpD) YDDP-MONOMER (YddP)

- ABC-29-CPLX (peptide uptake ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.222, average score: 1.000)
  Genes in pathway or complex:
             0.9982 0.9943 G2002 (sapA) SAPA-MONOMER (SapA)
             0.9978 0.9926 G2000 (sapC) SAPC-MONOMER (SapC)
             0.9980 0.9955 G2001 (sapB) SAPB-MONOMER (SapB)
   *in cand* 0.9995 0.9987 EG12304 (sapD) SAPD-MONOMER (SapD)
   *in cand* 0.9993 0.9987 EG12305 (sapF) SAPF-MONOMER (SapF)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9988 EG10677 (oppD) OPPD-MONOMER (OppD)
   *in cand* 0.9996 0.9991 EG10678 (oppF) OPPF-MONOMER (OppF)
   *in cand* 0.9991 0.9987 EG12079 (nikE) NIKE-MONOMER (NikE)
   *in cand* 0.9995 0.9990 EG12627 (dppD) DPPD-MONOMER (DppD)
   *in cand* 0.9996 0.9990 EG12628 (dppF) DPPF-MONOMER (DppF)
   *in cand* 0.9996 0.9991 G6777 (ddpF) YDDO-MONOMER (YddO)
   *in cand* 0.9994 0.9988 G6778 (ddpD) YDDP-MONOMER (YddP)

- ABC-59-CPLX (YddO/YddP/YddQ/YddR/YddS ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.222, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9991 G6777 (ddpF) YDDO-MONOMER (YddO)
   *in cand* 0.9994 0.9988 G6778 (ddpD) YDDP-MONOMER (YddP)
             0.9888 0.9685 G6781 (ddpA) YDDS-MONOMER (YddS)
             0.9939 0.9716 G6779 (ddpC) YDDQ-MONOMER (YddQ)
             0.9975 0.9882 G6780 (ddpB) YDDR-MONOMER (YddR)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9988 EG10677 (oppD) OPPD-MONOMER (OppD)
   *in cand* 0.9996 0.9991 EG10678 (oppF) OPPF-MONOMER (OppF)
   *in cand* 0.9991 0.9987 EG12079 (nikE) NIKE-MONOMER (NikE)
   *in cand* 0.9995 0.9987 EG12304 (sapD) SAPD-MONOMER (SapD)
   *in cand* 0.9993 0.9987 EG12305 (sapF) SAPF-MONOMER (SapF)
   *in cand* 0.9995 0.9990 EG12627 (dppD) DPPD-MONOMER (DppD)
   *in cand* 0.9996 0.9990 EG12628 (dppF) DPPF-MONOMER (DppF)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12304 EG12305 (centered at EG12304)
EG10677 EG10678 (centered at EG10678)
EG12079 (centered at EG12079)
G6777 G6778 (centered at G6778)
EG12627 EG12628 (centered at EG12627)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6778   G6777   EG12628   EG12627   EG12305   EG12304   EG12079   EG10678   EG10677   
212/623227/623244/623236/623221/623243/623231/623249/623269/623
AAUR290340:2:Tyes------0-2982
AAVE397945:0:Tyes0110-----
ABAC204669:0:Tyes-----04688-0
ABAU360910:0:Tyes23095012308502-50205011069
ACAU438753:0:Tyes212521241219122002125107512191191
ACEL351607:0:Tyes-1-----10
AFER243159:0:Tyes---0-0---
AFUL224325:0:Tyes---0-----
AHYD196024:0:Tyes71715157161516011515716717
AMET293826:0:Tyes173917381732899-89909001739
ANAE240017:0:Tyes-0----000
AORE350688:0:Tyes0110---10
APER272557:0:Tyes-011661349-1349-1166-
APLE416269:0:Tyes-11011817267861-
APLE434271:0:Tno-11011646997621-
ASAL382245:5:Tyes78117820149014891782781
ASP1667:3:Tyes-------00
ASP232721:2:Tyes0110-----
ASP62928:0:Tyes-0-------
ASP76114:2:Tyes-486-00-000
AVAR240292:3:Tyes------0--
BABO262698:0:Tno336546-560-5600546547
BABO262698:1:Tno--0-0----
BAMB339670:2:Tno-------01
BAMB339670:3:Tno-001010--
BAMB398577:2:Tno-------01
BAMB398577:3:Tno-001010--
BAMY326423:0:Tyes101101011144
BANT260799:0:Tno0699420442031-42044204936
BANT261594:2:Tno063641454144140341454145885
BANT568206:2:Tyes033234380437913571438043803069
BANT592021:2:Tno067343664365142743664366926
BBAC264462:0:Tyes-911911910--0911910
BBRO257310:0:Tyes100581-1900-990
BCAN483179:0:Tno1661-676-6763890662
BCAN483179:1:Tno--0-0----
BCEN331271:1:Tno------110
BCEN331271:2:Tno-00101---
BCEN331272:2:Tyes------001
BCEN331272:3:Tyes-00101---
BCER226900:1:Tyes6526530652653--0923
BCER288681:0:Tno65966040754074039840754075926
BCER315749:1:Tyes0116453153166461645
BCER405917:1:Tyes71972009997204544530999
BCER572264:1:Tno591592085903603590859
BCLA66692:0:Tyes124724435643697162956303696563
BHAL272558:0:Tyes371337123712358371235803591
BJAP224911:0:Fyes6970392437123695759236918943710
BLIC279010:0:Tyes4893293290-01863494489
BMAL243160:0:Tno-------10
BMAL243160:1:Tno-110101--
BMAL320388:0:Tno-------10
BMAL320388:1:Tno-110101--
BMAL320389:0:Tyes-------10
BMAL320389:1:Tyes-001010--
BMEL224914:0:Tno66717-0-029166816
BMEL224914:1:Tno--0-0----
BMEL359391:0:Tno342546-560-5600546547
BMEL359391:1:Tno--0-0----
BOVI236:0:Tyes1131--131-3450-
BOVI236:1:Tyes---0-0---
BPAR257311:0:Tno100522-1717-803
BPER257313:0:Tyes-----0--0
BPET94624:0:Tyes213911036330281914773
BPSE272560:0:Tyes------001
BPSE272560:1:Tyes-11010---
BPSE320372:0:Tno------001
BPSE320372:1:Tno-11010---
BPSE320373:0:Tno------001
BPSE320373:1:Tno-11010---
BPUM315750:0:Tyes38826126126002602266393388
BSP36773:1:Tyes------110
BSP36773:2:Tyes-00101---
BSP376:0:Tyes0201279379479379419061832011
BSUB:0:Tyes17411010179179174
BSUI204722:0:Tyes1--656-6563740643
BSUI204722:1:Tyes--0-0----
BSUI470137:0:Tno1--638-6383550625
BSUI470137:1:Tno--0-0----
BTHA271848:0:Tno------001
BTHA271848:1:Tno-11010---
BTHU281309:1:Tno3634253363536340103635507
BTHU412694:1:Tno611612082603883870826
BVIE269482:6:Tyes-------01
BVIE269482:7:Tyes-001010--
BWEI315730:4:Tyes6616620936410411410662936
BXEN266265:1:Tyes0-----110
CACE272562:1:Tyes348234813481034863487348634813482
CBEI290402:0:Tyes1-01---01
CBOT36826:1:Tno1779-----017781779
CBOT441770:0:Tyes1759-----017581759
CBOT441771:0:Tno1618-----016171618
CBOT441772:1:Tno1706-1705---017051706
CBOT498213:1:Tno1769---1768-017681769
CBOT508765:1:Tyes1-0----01
CBOT515621:2:Tyes1------01
CBOT536232:0:Tno1960-----019591960
CCHL340177:0:Tyes178--178---0-
CCUR360105:0:Tyes------0--
CDES477974:0:Tyes0-10-01--
CDIF272563:1:Tyes1-01---01
CEFF196164:0:Fyes------0--
CHYD246194:0:Tyes011010118810
CKLU431943:1:Tyes262----0---
CKOR374847:0:Tyes-1---0-10
CMAQ397948:0:Tyes-----0---
CNOV386415:0:Tyes0--0---10
CPER195102:1:Tyes1-0----01
CPER195103:0:Tno1-0----01
CPER289380:3:Tyes1-0----01
CPHY357809:0:Tyes-117571174---01174
CPSY167879:0:Tyes----10---
CSAL290398:0:Tyes-0---1---
CSP501479:2:Fyes------0--
CSP501479:4:Fyes1-0----0-
CSP501479:7:Fyes-0--0----
CSP501479:8:Fyes-----0---
CTEP194439:0:Tyes0976-0---9760
CTET212717:0:Tyes------0--
CVIO243365:0:Tyes332411010332333233324
DARO159087:0:Tyes-0-0-0-0-
DDES207559:0:Tyes922921921922-9220921922
DGEO319795:1:Tyes1001--001
DHAF138119:0:Tyes14214310-142111384
DOLE96561:0:Tyes10-1-1-0-
DPSY177439:2:Tyes-1-0-----
DRAD243230:3:Tyes1-01---01
DRED349161:0:Tyes2061020602061-2061-20602061
DSHI398580:5:Tyes0----0---
DSP216389:0:Tyes1-0----01
DSP255470:0:Tno1-0----01
DVUL882:1:Tyes2397002397-----
ECAR218491:0:Tyes34734624652466012465346347
ECOL199310:0:Tno01260226035657252010
ECOL316407:0:Tno243242248424834546254510
ECOL331111:6:Tno2692682540254199100247410
ECOL362663:0:Tno01234723485556228110
ECOL364106:1:Tno0126232624123124254210
ECOL405955:2:Tyes01241024119596234210
ECOL409438:6:Tyes280279256125624849249610
ECOL413997:0:Tno217216218121824546212110
ECOL439855:4:Tno01210521061431422010204205
ECOL469008:0:Tno1962196310212521246621722173
ECOL481805:0:Tno2004200510216221615922082209
ECOL585034:0:Tno225224239423955253232810
ECOL585035:0:Tno0125442545114115247110
ECOL585055:0:Tno27026926022603110111251010
ECOL585056:2:Tno194193250125025253241910
ECOL585057:0:Tno168167245924606263237510
ECOL585397:0:Tno01273127329899266910
ECOL83334:0:Tno34734627392740124125266610
ECOLI:0:Tno251250234223434849228010
ECOO157:0:Tno18618727052706417416262810
EFAE226185:3:Tyes----120782077-0
EFER585054:1:Tyes46451872187310454546
ESP42895:1:Tyes21295781020112010167821282129
FALN326424:0:Tyes-0010---1
FMAG334413:1:Tyes-----011016-
FNOD381764:0:Tyes114001400101140001
FNUC190304:0:Tyes0--0--71010
FPHI484022:1:Tyes------00-
FRANT:0:Tno------110
FSP1855:0:Tyes---1-1160-
FTUL351581:0:Tno--------0
FTUL393115:0:Tyes------110
FTUL401614:0:Tyes------001
FTUL418136:0:Tno--------0
FTUL458234:0:Tno--------0
GKAU235909:1:Tyes0-------0
GMET269799:1:Tyes-001-1-01
GOXY290633:5:Tyes10----0--
GSUL243231:0:Tyes0-10-01-0
GTHE420246:1:Tyes012762276312763112763
GURA351605:0:Tyes-00101001
GVIO251221:0:Tyes1001-1-01
HACI382638:1:Tyes--0-0----
HARS204773:0:Tyes0--------
HAUR316274:2:Tyes0122782279-2279110
HBUT415426:0:Tyes-----0---
HCHE349521:0:Tyes117476661748-174806661076
HDUC233412:0:Tyes-110477804---
HINF281310:0:Tyes15959609798001
HINF374930:0:Tyes9638383710979796
HINF71421:0:Tno1646465515514001
HMAR272569:8:Tyes-111410-01621620
HMUK485914:1:Tyes321320320321-32100321
HNEP81032:0:Tyes------000
HPY:0:Tno--0-0----
HPYL357544:1:Tyes--0-0----
HPYL85963:0:Tno--0-0----
HSAL478009:4:Tyes-149012-10149-
HSOM205914:1:Tyes----01---
HSOM228400:0:Tno----01---
HSP64091:2:Tno-1470--10147-
HWAL362976:1:Tyes-9620--6962962-
ILOI283942:0:Tyes----10---
JSP290400:1:Tyes1093242109410932421093-10
JSP375286:0:Tyes3302-----0--
KPNE272620:2:Tyes81810162896289701284610161017
KRAD266940:2:Fyes-0---888-889888
LACI272621:0:Tyes--------0
LBRE387344:2:Tyes----1491-0-1492
LCAS321967:1:Tyes------0-442
LDEL321956:0:Tyes----909-909-0
LDEL390333:0:Tyes----840-840-0
LGAS324831:0:Tyes----0-0--
LHEL405566:0:Tyes0-------0
LINN272626:1:Tno0-------0
LINT363253:3:Tyes-0-------
LJOH257314:0:Tyes----0-0--
LLAC272622:3:Tyes------0--
LLAC272622:5:Tyes--------0
LLAC272623:0:Tyes------1493-0
LMON169963:0:Tno0-------0
LMON265669:0:Tyes0-------0
LPLA220668:0:Tyes----1---0
LPNE272624:0:Tno---0-----
LPNE297245:1:Fno---0-----
LPNE297246:1:Fyes---0-----
LPNE400673:0:Tno---0-----
LSAK314315:0:Tyes----1---0
LSPH444177:1:Tyes382438011887380018870260518873824
LWEL386043:0:Tyes0-------0
MACE188937:0:Tyes--0----0-
MAER449447:0:Tyes------0--
MAQU351348:2:Tyes01-0----0
MAVI243243:0:Tyes------0--
MEXT419610:0:Tyes-0-------
MLOT266835:2:Tyes48074808375837573758147701
MMAR394221:0:Tyes------00-
MMAZ192952:0:Tyes----0----
MPET420662:1:Tyes10-1-----
MSED399549:0:Tyes-----0---
MSME246196:0:Tyes100101218801
MSP164756:1:Tno-----0---
MSP164757:0:Tno-----0---
MSP189918:2:Tyes-----0---
MSP266779:3:Tyes3683308901023383694-3088
MSP400668:0:Tyes375915710137581157143614360
MSP409:2:Tyes--1010332321301100
MSUC221988:0:Tyes-52052052101-520-
MVAN350058:0:Tyes-0058001-01
MXAN246197:0:Tyes1001-1-01
NEUR228410:0:Tyes--0------
NFAR247156:2:Tyes-----0--0
NMUL323848:3:Tyes-00------
NPHA348780:2:Tyes-0-------
NSP103690:6:Tyes------0--
NSP35761:1:Tyes--1--0-10
OANT439375:3:Tyes0--------
OANT439375:4:Tyes------0--
OANT439375:5:Tyes-2571010---
OCAR504832:0:Tyes30793089-308900308930893089
OIHE221109:0:Tyes16190618163618619512517
PABY272844:0:Tyes-608-609-609--0
PACN267747:0:Tyes-087---87870
PAER178306:0:Tyes----15030---
PAER208963:0:Tyes-1101011-
PAER208964:0:Tno-1101011-
PARS340102:0:Tyes---07570---
PATL342610:0:Tyes----10---
PCAR338963:0:Tyes-00---00-
PCRY335284:1:Tyes-00101---
PENT384676:0:Tyes-0010100-
PFLU205922:0:Tyes-0010100-
PFLU216595:1:Tyes7920010100-
PFLU220664:0:Tyes31133114010146660-
PFUR186497:0:Tyes-124011239-1239--0
PHAL326442:1:Tyes----10---
PHOR70601:0:Tyes-15830-0--584
PING357804:0:Tyes----10---
PISL384616:0:Tyes----0----
PLUM243265:0:Fyes2237-1023392338223622362237
PLUT319225:0:Tyes09729720---9720
PMAR74547:0:Tyes------0--
PMEN399739:0:Tyes-0010100-
PMOB403833:0:Tyes2490250249250249-250249
PMUL272843:1:Tyes1668110676675166716671668
PPEN278197:0:Tyes--------0
PPRO298386:2:Tyes011792179313041303110
PPUT160488:0:Tno-0010124690-
PPUT351746:0:Tyes-0010100-
PPUT76869:0:Tno-0010100-
PSP117:0:Tyes-001---01
PSP296591:2:Tyes36523651214421432144214337030-
PSP56811:2:Tyes015161516151515161515110
PSYR205918:0:Tyes195901988198719881987-412275
PSYR223283:2:Tyes10-1961-1961---
RCAS383372:0:Tyes213523013520-32
RDEN375451:4:Tyes10------1
RETL347834:3:Tyes------0--
RETL347834:5:Tyes0134134133134133-24712470
REUT264198:3:Tyes01-0-0--0
REUT381666:1:Tyes403-04031732--0-
REUT381666:2:Tyes-1---0741-0
RFER338969:1:Tyes-511020102110201021-0-
RLEG216596:2:Tyes------0--
RLEG216596:3:Tyes-0-------
RLEG216596:5:Tyes0--------
RLEG216596:6:Tyes--1010-27602759
RMET266264:1:Tyes50911509-0-10
RMET266264:2:Tyes------0--
RPAL258594:0:Tyes6913--692-461-0
RPAL316056:0:Tyes0-17591760--228017591760
RPAL316057:0:Tyes0--0-02233-0
RPAL316058:0:Tyes093-2979104-13832978-
RPOM246200:1:Tyes130813072514-1307-0-2513
RRUB269796:1:Tyes115821768176717681767168101
RSOL267608:1:Tyes992991-0-0-10
RSP101510:2:Fyes-----1-01
RSP101510:3:Fyes-1-0-----
RSP357808:0:Tyes223693023690-32
RSPH272943:3:Tyes--101013--
RSPH349101:0:Tno01-0-0-1-
RSPH349101:1:Tno--0-0-13--
RSPH349102:4:Tyes--664663664-0--
RXYL266117:0:Tyes0776-2149-76
SACI330779:0:Tyes-----0---
SACI56780:0:Tyes-110-0--0
SAGA205921:0:Tno--------0
SAGA208435:0:Tno--------0
SAGA211110:0:Tyes--------0
SARE391037:0:Tyes439238413841038413842384138413842
SAUR158878:1:Tno--805-805-0805801
SAUR158879:1:Tno--694-694-0694689
SAUR196620:0:Tno--716---0716711
SAUR273036:0:Tno--------0
SAUR282458:0:Tno--737-737-0737732
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