CANDIDATE ID: 173

CANDIDATE ID: 173

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9939500e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.5555556e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7554 (hybO) (b2997)
   Products of gene:
     - MONOMER0-145 (hydrogenase 2, small subunit)
     - FORMHYDROG2-CPLX (hydrogenase 2)
       Reactions:
        a menaquinone + H2[periplasmic space] + 2 H+  =  a menaquinol + 2 H+[periplasmic space]

- EG11805 (hybG) (b2990)
   Products of gene:
     - EG11805-MONOMER (hydrogenase 2 accessory protein)

- EG11804 (hybF) (b2991)
   Products of gene:
     - EG11804-MONOMER (protein involved with the maturation of hydrogenases 1 and 2)

- EG11803 (hybE) (b2992)
   Products of gene:
     - EG11803-MONOMER (hydrogenase 2-specific chaperone)

- EG11802 (hybD) (b2993)
   Products of gene:
     - EG11802-MONOMER (predicted maturation peptidase for hydrogenase 2)

- EG11801 (hybC) (b2994)
   Products of gene:
     - HYBC-MONOMER (hydrogenase 2, large subunit)
     - FORMHYDROG2-CPLX (hydrogenase 2)
       Reactions:
        a menaquinone + H2[periplasmic space] + 2 H+  =  a menaquinol + 2 H+[periplasmic space]

- EG10484 (hypB) (b2727)
   Products of gene:
     - EG10484-MONOMER (accessory protein for nickel incorporation into hydrogenase isoenzymes)
     - CPLX0-3821 (HypA-HypB heterodimer)
     - CPLX0-3561 (GTP hydrolase involved in nickel liganding into hydrogenases)

- EG10483 (hypA) (b2726)
   Products of gene:
     - EG10483-MONOMER (accessory protein for nickel incorporation into hydrogenase 3)
     - CPLX0-3821 (HypA-HypB heterodimer)

- EG10471 (hyaD) (b0975)
   Products of gene:
     - EG10471-MONOMER (protein involved in processing of HyaA and HyaB proteins)



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 113
Effective number of orgs (counting one per cluster within 468 clusters): 83

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80819
XAUT78245 ncbi Xanthobacter autotrophicus Py29
TERY203124 ncbi Trichodesmium erythraeum IMS1018
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12518
TCRU317025 ncbi Thiomicrospira crunogena XCL-28
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT29
SSP94122 ncbi Shewanella sp. ANA-38
SSP387093 ncbi Sulfurovum sp. NBC37-18
SSON300269 ncbi Shigella sonnei Ss0469
SSED425104 ncbi Shewanella sediminis HAW-EB38
SONE211586 ncbi Shewanella oneidensis MR-18
SLOI323850 ncbi Shewanella loihica PV-48
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB8
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23388
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4769
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B679
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91509
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT189
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty29
SDYS300267 ncbi Shigella dysenteriae Sd1979
SBOY300268 ncbi Shigella boydii Sb2279
SBAL402882 ncbi Shewanella baltica OS1858
SBAL399599 ncbi Shewanella baltica OS1958
SAVE227882 ncbi Streptomyces avermitilis MA-46808
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170259
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170299
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.19
RSP357808 ncbi Roseiflexus sp. RS-18
RSP101510 ncbi Rhodococcus jostii RHA18
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111708
RPAL316057 ncbi Rhodopseudomonas palustris BisB59
RPAL316056 ncbi Rhodopseudomonas palustris BisB189
RPAL316055 ncbi Rhodopseudomonas palustris BisA539
RPAL258594 ncbi Rhodopseudomonas palustris CGA0099
RMET266264 ncbi Ralstonia metallidurans CH348
RFER338969 ncbi Rhodoferax ferrireducens T1188
REUT381666 ncbi Ralstonia eutropha H168
RCAS383372 ncbi Roseiflexus castenholzii DSM 139418
PNAP365044 ncbi Polaromonas naphthalenivorans CJ28
PDIS435591 ncbi Parabacteroides distasonis ATCC 85038
NSP387092 ncbi Nitratiruptor sp. SB155-28
NSP103690 ncbi Nostoc sp. PCC 71208
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E9
MSME246196 ncbi Mycobacterium smegmatis MC2 1558
MPET420662 ncbi Methylibium petroleiphilum PM18
MMAZ192952 ncbi Methanosarcina mazei Go18
MMAG342108 ncbi Magnetospirillum magneticum AMB-19
MBAR269797 ncbi Methanosarcina barkeri Fusaro8
MACE188937 ncbi Methanosarcina acetivorans C2A8
HMOD498761 ncbi Heliobacterium modesticaldum Ice18
HHEP235279 ncbi Helicobacter hepaticus ATCC 514498
GURA351605 ncbi Geobacter uraniireducens Rf48
GSUL243231 ncbi Geobacter sulfurreducens PCA8
GMET269799 ncbi Geobacter metallireducens GS-158
FSP1855 Frankia sp. EAN1pec8
FSP106370 ncbi Frankia sp. CcI38
FJOH376686 ncbi Flavobacterium johnsoniae UW1018
FALN326424 ncbi Frankia alni ACN14a8
EFER585054 ncbi Escherichia fergusonii ATCC 354699
ECOO157 ncbi Escherichia coli O157:H7 EDL9339
ECOL83334 Escherichia coli O157:H79
ECOL585397 ncbi Escherichia coli ED1a9
ECOL585057 ncbi Escherichia coli IAI399
ECOL585056 ncbi Escherichia coli UMN0269
ECOL585055 ncbi Escherichia coli 559899
ECOL585035 ncbi Escherichia coli S889
ECOL585034 ncbi Escherichia coli IAI19
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL469008 ncbi Escherichia coli BL21(DE3)9
ECOL439855 ncbi Escherichia coli SMS-3-59
ECOL413997 ncbi Escherichia coli B str. REL6069
ECOL409438 ncbi Escherichia coli SE119
ECOL405955 ncbi Escherichia coli APEC O19
ECOL364106 ncbi Escherichia coli UTI899
ECOL362663 ncbi Escherichia coli 5369
ECOL331111 ncbi Escherichia coli E24377A9
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
ECOL199310 ncbi Escherichia coli CFT0739
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10439
DSP255470 ncbi Dehalococcoides sp. CBDB18
DSP216389 ncbi Dehalococcoides sp. BAV18
DHAF138119 ncbi Desulfitobacterium hafniense Y518
DETH243164 ncbi Dehalococcoides ethenogenes 1958
DARO159087 ncbi Dechloromonas aromatica RCB9
CSP501479 Citreicella sp. SE458
CJEJ407148 ncbi Campylobacter jejuni jejuni 811168
CJEJ360109 ncbi Campylobacter jejuni doylei 269.978
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1768
CJEJ195099 ncbi Campylobacter jejuni RM12218
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111688
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3818
CFET360106 ncbi Campylobacter fetus fetus 82-408
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C8
CCUR360105 ncbi Campylobacter curvus 525.928
CCON360104 ncbi Campylobacter concisus 138268
BVIE269482 ncbi Burkholderia vietnamiensis G48
BSP376 Bradyrhizobium sp.9
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1109
ASP62928 ncbi Azoarcus sp. BH729
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4499
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL039
APLE416269 ncbi Actinobacillus pleuropneumoniae L209
AHYD196024 Aeromonas hydrophila dhakensis9
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43048
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232708
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-19
ACRY349163 ncbi Acidiphilium cryptum JF-58
ACAU438753 ncbi Azorhizobium caulinodans ORS 5719
ABUT367737 ncbi Arcobacter butzleri RM40188
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3458


Names of the homologs of the genes in the group in each of these orgs
  G7554   EG11805   EG11804   EG11803   EG11802   EG11801   EG10484   EG10483   EG10471   
YENT393305 YE3609YE3602AYE3603AYE3604YE3605YE3606YE3603YE2797YE3605
XAUT78245 XAUT_2173XAUT_2185XAUT_2182XAUT_2180XAUT_2176XAUT_2174XAUT_2183XAUT_2182XAUT_2176
TERY203124 TERY_3369TERY_0794TERY_0798TERY_3367TERY_3368TERY_0802TERY_0798TERY_3367
TDEN326298 TMDEN_1436TMDEN_1429TMDEN_1424TMDEN_1433TMDEN_1435TMDEN_1430TMDEN_1424TMDEN_1433
TCRU317025 TCR_2038TCR_2042TCR_2039TCR_2036TCR_2037TCR_2043TCR_2039TCR_2036
STYP99287 STM3150STM3143STM3144STM3145STM3146STM3147STM2855STM2854STM1789
SSP94122 SHEWANA3_1880SHEWANA3_1870SHEWANA3_1867SHEWANA3_1877SHEWANA3_1879SHEWANA3_1871SHEWANA3_1867SHEWANA3_1877
SSP387093 SUN_1663SUN_1648SUN_1644SUN_1642SUN_1662SUN_1649SUN_1644SUN_1642
SSON300269 SSO_3142SSO_3135SSO_3136SSO_3137SSO_3138SSO_3139SSO_2874SSO_2873SSO_0981
SSED425104 SSED_1908SSED_1901SSED_1931SSED_1905SSED_1907SSED_1902SSED_1898SSED_1905
SONE211586 SO_2099SO_2092SO_2089SO_2096SO_2098SO_2093SO_2089SO_2096
SLOI323850 SHEW_1765SHEW_1758SHEW_1755SHEW_1762SHEW_1764SHEW_1759SHEW_1755SHEW_1762
SHIGELLA S3245HYBGHYBFHYBEHYBDHYBCHYPBHYPAHYAD
SFUM335543 SFUM_2953SFUM_2950SFUM_4011SFUM_2951SFUM_2952SFUM_4012SFUM_4011SFUM_2951
SFLE373384 SFV_3050SFV_3043SFV_3044SFV_3045SFV_3046SFV_3047SFV_2776SFV_2777SFV_0984
SFLE198214 AAN44522.1AAN44515.1AAN44516.1AAN44517.1AAN44518.1AAN44519.1AAN44235.1AAN44234.1AAN42604.1
SERY405948 SACE_3061SACE_3072SACE_3075SACE_3059SACE_3062SACE_3076SACE_3075SACE_3059
SENT454169 SEHA_C3397SEHA_C3390SEHA_C3391SEHA_C3392SEHA_C3393SEHA_C3394SEHA_C3044SEHA_C3043SEHA_C1987
SENT321314 SCH_3091SCH_3084SCH_3085SCH_3086SCH_3087SCH_3088SCH_2788SCH_2787SCH_1784
SENT295319 SPA3018SPA3011SPA3012SPA3013SPA3014SPA3015SPA2713SPA2712SPA1084
SENT220341 STY3321STY3314STY3315STY3316STY3317STY3318STY2977STY2976STY1916
SENT209261 T3071T3064T3065T3066T3067T3068T2757T2756T1087
SDYS300267 SDY_3076SDY_3083SDY_3082SDY_3081SDY_3080SDY_3079SDY_2924SDY_2923SDY_0950
SBOY300268 SBO_2866SBO_2873SBO_2872SBO_2871SBO_2870SBO_2869SBO_2793SBO_2794SBO_2256
SBAL402882 SHEW185_1915SHEW185_1907SHEW185_1904SHEW185_1912SHEW185_1914SHEW185_1908SHEW185_1904SHEW185_1912
SBAL399599 SBAL195_1922SBAL195_1914SBAL195_1911SBAL195_1919SBAL195_1921SBAL195_1915SBAL195_1911SBAL195_1919
SAVE227882 SAV7366SAV7376SAV7373SAV7372SAV7367SAV7374SAV7373SAV7372
RSPH349102 RSPH17025_3376RSPH17025_3363RSPH17025_3366RSPH17025_3368RSPH17025_3372RSPH17025_3375RSPH17025_3365RSPH17025_3366RSPH17025_3372
RSPH349101 RSPH17029_2146RSPH17029_2159RSPH17029_2156RSPH17029_2154RSPH17029_2150RSPH17029_2147RSPH17029_2157RSPH17029_2156RSPH17029_2150
RSPH272943 RSP_0495RSP_0508RSP_0505RSP_0503RSP_0499RSP_0496RSP_0506RSP_0505RSP_0499
RSP357808 ROSERS_2319ROSERS_0973ROSERS_0967ROSERS_2322ROSERS_2320ROSERS_0972ROSERS_0967ROSERS_2322
RSP101510 RHA1_RO04603RHA1_RO04619RHA1_RO04601RHA1_RO00032RHA1_RO04604RHA1_RO04602RHA1_RO04601RHA1_RO04609
RRUB269796 RRU_A1161RRU_A0307RRU_A1168RRU_A1164RRU_A1162RRU_A1169RRU_A1168RRU_A1164
RPAL316057 RPD_1162RPD_1176RPD_1173RPD_1171RPD_1165RPD_1163RPD_1174RPD_1173RPD_1165
RPAL316056 RPC_3772RPC_4558RPC_3762RPC_3764RPC_3769RPC_3771RPC_3761RPC_3762RPC_3769
RPAL316055 RPE_1231RPE_1244RPE_1241RPE_1239RPE_1234RPE_1232RPE_1242RPE_1241RPE_1234
RPAL258594 RPA0962RPA0976RPA0973RPA0971RPA0965RPA0963RPA0974RPA0973RPA0965
RMET266264 RMET_1298RMET_1283RMET_1535RMET_1293RMET_1297RMET_1536RMET_1535RMET_1293
RFER338969 RFER_4088RFER_4095RFER_4094RFER_4092RFER_4091RFER_4096RFER_4095RFER_4092
REUT381666 PHG001PHG073PHG094PHG005PHG002PHG095PHG094PHG005
RCAS383372 RCAS_3148RCAS_3797RCAS_3810RCAS_3145RCAS_3147RCAS_3807RCAS_3810RCAS_3145
PNAP365044 PNAP_1975PNAP_1964PNAP_1966PNAP_1971PNAP_1974PNAP_1963PNAP_1964PNAP_1971
PDIS435591 BDI_1811BDI_1808BDI_1806BDI_1814BDI_1812BDI_1805BDI_1806BDI_1814
NSP387092 NIS_0963NIS_0975NIS_0979NIS_0966NIS_0964NIS_0974NIS_0979NIS_0966
NSP103690 ALL0688ASR0695ALR0699ALR1423ALR0766ALR0700ALR0699ALR1423
MSUC221988 MS2365MS2358MS1545MS2359MS2360MS2361MS1463MS1545MS2360
MSME246196 MSMEG_2720MSMEG_2703MSMEG_2722MSMEG_3927MSMEG_2263MSMEG_2721MSMEG_2722MSMEG_2264
MPET420662 MPE_A2827MPE_A2813MPE_A2816MPE_A2822MPE_A2826MPE_A2815MPE_A2816MPE_A2822
MMAZ192952 MM2169MM2164MM2317MM2172MM2176MM2318MM2317MM3044
MMAG342108 AMB1650AMB1640AMB1643AMB2662AMB1646AMB1647AMB1642AMB1643AMB1646
MBAR269797 MBAR_A1847MBAR_A1848MBAR_A1850MBAR_A1844MBAR_A1840MBAR_A1851MBAR_A1850MBAR_A0451
MACE188937 MA1141MA1140MA1138MA1144MA1147MA1137MA1138MA0976
HMOD498761 HM1_0205HM1_1485HM1_1482HM1_1481HM1_0206HM1_1483HM1_1482HM1_1481
HHEP235279 HH_0056HH_0324HH_0808HH_0059HH_0057HH_0325HH_0808HH_0059
GURA351605 GURA_1943GURA_1951GURA_1942GURA_0542GURA_1946GURA_1949GURA_1942GURA_0542
GSUL243231 GSU_0782GSU_0307GSU_0374GSU_0120GSU_0785GSU_0305GSU_0374GSU_0120
GMET269799 GMET_3332GMET_0118GMET_3156GMET_3329GMET_3331GMET_0120GMET_3156GMET_3329
FSP1855 FRANEAN1_3403FRANEAN1_2486FRANEAN1_2483FRANEAN1_3406FRANEAN1_3404FRANEAN1_2482FRANEAN1_2483FRANEAN1_3406
FSP106370 FRANCCI3_1941FRANCCI3_1946FRANCCI3_1937FRANCCI3_4495FRANCCI3_1076FRANCCI3_1938FRANCCI3_1937FRANCCI3_1075
FJOH376686 FJOH_3906FJOH_3903FJOH_3905FJOH_3909FJOH_3907FJOH_3904FJOH_3905FJOH_3909
FALN326424 FRAAL2392FRAAL2398FRAAL2388FRAAL1828FRAAL1829FRAAL2389FRAAL2388FRAAL2391
EFER585054 EFER_2940EFER_2933EFER_2934EFER_2935EFER_2936EFER_2937EFER_0350EFER_0351EFER_1113
ECOO157 Z4351HYBGHYBFHYBEHYBDHYBCHYPBHYPAHYAD
ECOL83334 ECS3882ECS3875ECS3876ECS3877ECS3878ECS3879ECS3583ECS3582ECS1131
ECOL585397 ECED1_3647ECED1_3640ECED1_3641ECED1_3642ECED1_3643ECED1_3644ECED1_3179ECED1_3178ECED1_1059
ECOL585057 ECIAI39_3493ECIAI39_3486ECIAI39_3487ECIAI39_3488ECIAI39_3489ECIAI39_3490ECIAI39_2916ECIAI39_2915ECIAI39_2171
ECOL585056 ECUMN_3481ECUMN_3474ECUMN_3475ECUMN_3476ECUMN_3477ECUMN_3478ECUMN_3050ECUMN_3049ECUMN_1165
ECOL585055 EC55989_3414EC55989_3407EC55989_3408EC55989_3409EC55989_3410EC55989_3411EC55989_2994EC55989_2993EC55989_1083
ECOL585035 ECS88_3379ECS88_3372ECS88_3373ECS88_3374ECS88_3375ECS88_3376ECS88_2992ECS88_2991ECS88_0997
ECOL585034 ECIAI1_3146ECIAI1_3139ECIAI1_3140ECIAI1_3141ECIAI1_3142ECIAI1_3143ECIAI1_2822ECIAI1_2821ECIAI1_1016
ECOL481805 ECOLC_0696ECOLC_0703ECOLC_0702ECOLC_0701ECOLC_0700ECOLC_0699ECOLC_0985ECOLC_0986ECOLC_2621
ECOL469008 ECBD_0741ECBD_0748ECBD_0747ECBD_0746ECBD_0745ECBD_0744ECBD_0998ECBD_0999ECBD_2620
ECOL439855 ECSMS35_3283ECSMS35_3276ECSMS35_3277ECSMS35_3278ECSMS35_3279ECSMS35_3280ECSMS35_2852ECSMS35_2851ECSMS35_2142
ECOL413997 ECB_00975ECB_02866ECB_02867ECB_02868ECB_02869ECB_02870ECB_02577ECB_02576ECB_00978
ECOL409438 ECSE_3282ECSE_3275ECSE_3276ECSE_3277ECSE_3278ECSE_3279ECSE_2975ECSE_2974ECSE_1037
ECOL405955 APECO1_3425APECO1_3797APECO1_3431APECO1_3430APECO1_3429APECO1_3428APECO1_3798APECO1_3799APECO1_79
ECOL364106 UTI89_C3419UTI89_C3412UTI89_C3413UTI89_C3414UTI89_C3415UTI89_C3416UTI89_C3090UTI89_C3089UTI89_C1043
ECOL362663 ECP_3083ECP_3076ECP_3077ECP_3078ECP_3079ECP_3080ECP_2690ECP_2689ECP_0980
ECOL331111 ECE24377A_3466ECE24377A_3458ECE24377A_3460ECE24377A_3461ECE24377A_3462ECE24377A_3463ECE24377A_3015ECE24377A_3014ECE24377A_1090
ECOL316407 ECK2991:JW2965:B2997ECK2984:JW2958:B2990ECK2985:JW5493:B2991ECK2986:JW2960:B2992ECK2987:JW2961:B2993ECK2988:JW2962:B2994ECK2722:JW2697:B2727ECK2721:JW2696:B2726ECK0966:JW0957:B0975
ECOL199310 C3734C3727C3728C3729C3730C3731C3287C3286C1116
ECAR218491 ECA1225ECA1233ECA1235ECA1230ECA1229ECA1228ECA1234ECA1235ECA1229
DSP255470 CBDBA130CBDBA1400CBDBA1395CBDBA128CBDBA129CBDBA1397CBDBA1395CBDBA128
DSP216389 DEHABAV1_0257DEHABAV1_1241DEHABAV1_1238DEHABAV1_0259DEHABAV1_0258DEHABAV1_1239DEHABAV1_1238DEHABAV1_0259
DHAF138119 DSY2238DSY2476DSY5044DSY1596DSY2239DSY5043DSY5044DSY1596
DETH243164 DET_0111DET_1433DET_1430DET_0109DET_0110DET_1431DET_1430DET_0109
DARO159087 DARO_3974DARO_3967DARO_3979DARO_3968DARO_3970DARO_3971DARO_3978DARO_3979DARO_3986
CSP501479 CSE45_3039CSE45_3026CSE45_3029CSE45_3035CSE45_3038CSE45_3028CSE45_3029CSE45_3035
CJEJ407148 C8J_1211C8J_0584C8J_0587C8J_1208C8J_1210C8J_0583C8J_0587C8J_1208
CJEJ360109 JJD26997_0458JJD26997_1045JJD26997_1042JJD26997_0462JJD26997_0459JJD26997_1046JJD26997_1042JJD26997_0462
CJEJ354242 CJJ81176_1283CJJ81176_0653CJJ81176_0656CJJ81176_1280CJJ81176_1282CJJ81176_0652CJJ81176_0656CJJ81176_1280
CJEJ195099 CJE_1403CJE_0727CJE_0730CJE_1400CJE_1402CJE_0726CJE_0730CJE_1400
CJEJ192222 CJ1267CCJ0624CJ0627CJ1264CCJ1266CCJ0623CJ0627CJ1264C
CHOM360107 CHAB381_0861CHAB381_0872CHAB381_0913CHAB381_0864CHAB381_0862CHAB381_0871CHAB381_0913CHAB381_0864
CFET360106 CFF8240_0940CFF8240_0932CFF8240_0929CFF8240_0937CFF8240_0939CFF8240_0933CFF8240_0929CFF8240_0937
CDES477974 DAUD_1041DAUD_1644DAUD_1649DAUD_1650DAUD_1042DAUD_1648DAUD_1649DAUD_1650
CCUR360105 CCV52592_1903CCV52592_1892CCV52592_1889CCV52592_1900CCV52592_1902CCV52592_1893CCV52592_1889CCV52592_1900
CCON360104 CCC13826_0101CCC13826_1095CCC13826_1092CCC13826_0098CCC13826_0100CCC13826_1096CCC13826_1092CCC13826_0098
BVIE269482 BCEP1808_5931BCEP1808_5944BCEP1808_5941BCEP1808_5934BCEP1808_5932BCEP1808_5942BCEP1808_5941BCEP1808_5934
BSP376 BRADO1684BRADO1698BRADO1694BRADO1692BRADO1687BRADO1685BRADO1696BRADO1694BRADO1687
BJAP224911 BLL6942BSL6929BLL6932BLL6934BLL6939BLR1721BLL6931BLL6932BLL6939
ASP62928 AZO3786AZO3802AZO3799AZO3797AZO3792AZO3787AZO3800AZO3799AZO3792
ASAL382245 ASA_1788ASA_1803ASA_1800ASA_1793ASA_1792ASA_1791ASA_1799ASA_1800ASA_1792
APLE434271 APJL_1349APJL_1355APJL_1356APJL_1354APJL_1353APJL_1352APJL_1341APJL_1356APJL_1353
APLE416269 APL_1331APL_1337APL_1338APL_1336APL_1335APL_1334APL_1327APL_1338APL_1335
AHYD196024 AHA_2526AHA_2511AHA_2514AHA_2521AHA_2522AHA_2523AHA_2515AHA_2514AHA_2522
AFUL224325 AF_1381AF_1369AF_1367AF_1378AF_1380AF_1368AF_1367AF_1378
AFER243159 AFE_3050AFE_2327AFE_3046AFE_3052AFE_3047AFE_3045AFE_3046AFE_3052
AEHR187272 MLG_2029MLG_2016MLG_2019MLG_2021MLG_2026MLG_2028MLG_2018MLG_2019MLG_2026
ACRY349163 ACRY_0338ACRY_0326ACRY_0331ACRY_0335ACRY_0337ACRY_0330ACRY_0331ACRY_0335
ACAU438753 AZC_0598AZC_0610AZC_0607AZC_0605AZC_0601AZC_0599AZC_0608AZC_0607AZC_0601
ABUT367737 ABU_1435ABU_1407ABU_1400ABU_1432ABU_1427ABU_1408ABU_1400ABU_1432
ABAC204669 ACID345_4237ACID345_1706ACID345_0925ACID345_4241ACID345_4240ACID345_0924ACID345_0925ACID345_4241


Organism features enriched in list (features available for 108 out of the 113 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Filaments 0.0034649610
Disease:Dysentery 0.000036066
Disease:Gastroenteritis 0.0034160713
GC_Content_Range4:0-40 7.837e-915213
GC_Content_Range4:40-60 1.768e-663224
GC_Content_Range7:0-30 0.0004972147
GC_Content_Range7:30-40 0.000017514166
GC_Content_Range7:50-60 3.748e-841107
Genome_Size_Range5:0-2 0.000035313155
Genome_Size_Range5:2-4 2.123e-715197
Genome_Size_Range5:4-6 4.987e-1468184
Genome_Size_Range9:1-2 0.001806813128
Genome_Size_Range9:2-3 0.000916411120
Genome_Size_Range9:3-4 0.0002687477
Genome_Size_Range9:4-5 7.449e-63496
Genome_Size_Range9:5-6 7.008e-73488
Gram_Stain:Gram_Neg 2.941e-988333
Gram_Stain:Gram_Pos 2.108e-610150
Habitat:Multiple 0.001140746178
Motility:No 0.001096016151
Motility:Yes 7.628e-976267
Oxygen_Req:Aerobic 5.827e-714185
Oxygen_Req:Facultative 3.575e-862201
Oxygen_Req:Microaerophilic 5.941e-61218
Shape:Coccus 2.933e-6282
Shape:Spiral 0.00095611434



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 418
Effective number of orgs (counting one per cluster within 468 clusters): 307

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317581
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329531
YPES386656 ncbi Yersinia pestis Pestoides F1
YPES377628 ncbi Yersinia pestis Nepal5161
YPES360102 ncbi Yersinia pestis Antiqua1
YPES349746 ncbi Yersinia pestis Angola1
YPES214092 ncbi Yersinia pestis CO921
YPES187410 ncbi Yersinia pestis KIM 101
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VVUL216895 ncbi Vibrio vulnificus CMCP60
VVUL196600 ncbi Vibrio vulnificus YJ0160
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106330
VFIS312309 ncbi Vibrio fischeri ES1141
VEIS391735 ncbi Verminephrobacter eiseniae EF01-21
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79011
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TFUS269800 ncbi Thermobifida fusca YX0
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP292414 ncbi Ruegeria sp. TM10401
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F11
SLAC55218 Ruegeria lacuscaerulensis1
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SCO ncbi Streptomyces coelicolor A3(2)1
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSOL267608 ncbi Ralstonia solanacearum GMI10001
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38411
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT264198 ncbi Ralstonia eutropha JMP1341
RETL347834 ncbi Rhizobium etli CFN 421
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30001
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a1
PSTU379731 ncbi Pseudomonas stutzeri A15011
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP296591 ncbi Polaromonas sp. JS6661
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPUT76869 ncbi Pseudomonas putida GB-11
PPUT351746 ncbi Pseudomonas putida F11
PPUT160488 ncbi Pseudomonas putida KT24401
PPRO298386 ncbi Photobacterium profundum SS90
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO11
PINT246198 Prevotella intermedia 170
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1251
PGIN242619 ncbi Porphyromonas gingivalis W830
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW251
PFLU205922 ncbi Pseudomonas fluorescens Pf0-11
PENT384676 ncbi Pseudomonas entomophila L481
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO11
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA141
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP35761 Nocardioides sp.0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT1
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSP409 Methylobacterium sp.0
MSP400668 ncbi Marinomonas sp. MWYL11
MSP266779 ncbi Chelativorans sp. BNC11
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR394221 ncbi Maricaulis maris MCS100
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MLEP272631 ncbi Mycobacterium leprae TN0
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP375286 ncbi Janthinobacterium sp. Marseille1
JSP290400 ncbi Jannaschia sp. CCS11
ILOI283942 ncbi Idiomarina loihiensis L2TR0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HINF71421 ncbi Haemophilus influenzae Rd KW201
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HARS204773 ncbi Herminiimonas arsenicoxydans0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GOXY290633 ncbi Gluconobacter oxydans 621H0
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FRANT ncbi Francisella tularensis tularensis SCHU S40
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DRED349161 ncbi Desulfotomaculum reducens MI-10
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30430
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIF272563 ncbi Clostridium difficile 6300
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BTHA271848 ncbi Burkholderia thailandensis E2641
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSUB ncbi Bacillus subtilis subtilis 1680
BSP36773 Burkholderia sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BPSE320373 ncbi Burkholderia pseudomallei 6681
BPSE320372 ncbi Burkholderia pseudomallei 1710b1
BPSE272560 ncbi Burkholderia pseudomallei K962431
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I1
BPAR257311 ncbi Bordetella parapertussis 128221
BOVI236 Brucella ovis1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BMAL320389 ncbi Burkholderia mallei NCTC 102471
BMAL320388 ncbi Burkholderia mallei SAVP11
BMAL243160 ncbi Burkholderia mallei ATCC 233441
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCEN331272 ncbi Burkholderia cenocepacia HI24241
BCEN331271 ncbi Burkholderia cenocepacia AU 10541
BCAN483179 ncbi Brucella canis ATCC 233651
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB501
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAMB398577 ncbi Burkholderia ambifaria MC40-61
BAMB339670 ncbi Burkholderia ambifaria AMMD1
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP232721 ncbi Acidovorax sp. JS420
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
AAVE397945 ncbi Acidovorax citrulli AAC00-11
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7554   EG11805   EG11804   EG11803   EG11802   EG11801   EG10484   EG10483   EG10471   
ZMOB264203
YPSE349747 YPSIP31758_1082
YPSE273123 YPTB2939
YPES386656 YPDSF_1606
YPES377628 YPN_1154
YPES360102 YPA_2397
YPES349746 YPANGOLA_A3559
YPES214092 YPO2670
YPES187410 Y1242
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WPIP955
WPIP80849
VVUL216895
VVUL196600
VPAR223926
VFIS312309 VF0670
VEIS391735 VEIS_1723
VCHO345073
VCHO
UURE95667 UU429
UURE95664 UUR10_0474
UPAR505682 UPA3_0448
TWHI218496
TWHI203267
TVOL273116
TTUR377629 TERTU_4203
TTHE300852
TTHE262724
TSP28240
TSP1755
TPSE340099
TPET390874
TPAL243276
TMAR243274
TLET416591
TFUS269800
TELO197221 TLR0057
TACI273075
SWOL335541
STRO369723
STOK273063 ST1025
STHE322159 STER_0328
STHE299768 STR0286
STHE292459
STHE264199 STU0286
SSUI391296
SSUI391295
SSP84588 SYNW1414OR0358
SSP64471
SSP644076 SCH4B_1216
SSP321327 CYA_0606
SSP292414 TM1040_0380
SSP1131 SYNCC9605_1080
SSOL273057
SSAP342451 SSP0260
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834 SMC01830
SMED366394 SMED_2377
SMAR399550 SMAR_1061
SLAC55218 SL1157_A0061
SHAE279808
SGOR29390
SGLO343509
SEPI176280 SE_1866
SEPI176279 SERP1874
SDEN318161
SDEG203122
SCO SCO1232
SAUR93062 SACOL2285
SAUR93061 SAOUHSC_02564
SAUR426430 NWMN_2193
SAUR418127 SAHV_2277
SAUR367830 SAUSA300_2243
SAUR359787 SAURJH1_2360
SAUR359786 SAURJH9_2317
SAUR282459 SAS2183
SAUR282458 SAR2377
SAUR273036 SAB2165
SAUR196620 MW2211
SAUR158879 SA2087
SAUR158878 SAV2293
SARE391037
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117
RTYP257363
RSOL267608 RSC2029
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058 RPB_1384
RMAS416276
RLEG216596 RL3727
RFEL315456
REUT264198 REUT_A0998
RETL347834 RHE_CH03300
RDEN375451
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199 GRAORF_0087
RAKA293614
PTOR263820
PSYR223283 PSPTO_2409
PSYR205918 PSYR_4453
PSTU379731 PST_3738
PSP56811
PSP312153 PNUC_1190
PSP296591 BPRO_1347
PSP117
PRUM264731
PPUT76869 PPUTGB1_2931
PPUT351746 PPUT_2840
PPUT160488 PP_2849
PPRO298386
PPEN278197
PMUL272843
PMOB403833
PMEN399739
PMAR93060
PMAR74547 PMT2230
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUM243265 PLU2176
PINT246198
PHAL326442 PSHAA1762
PGIN242619
PFLU220664
PFLU216595 PFLU0561
PFLU205922 PFL_0561
PENT384676 PSEEN2100
PCRY335284 PCRYO_0983
PCAR338963
PATL342610
PAST100379
PARC259536
PAER208964 PA4893
PAER208963 PA14_64670
PAER178306
PACN267747
OTSU357244
OIHE221109
OCAR504832
OANT439375 OANT_0338
NWIN323098
NSP35761
NSEN222891
NPHA348780 NP2014A
NOCE323261 NOC_2877
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MTUB419947 MRA_2881
MTUB336982 TBFG_12872
MTHE349307 MTHE_0682
MTBRV
MTBCDC
MSYN262723
MSP409
MSP400668 MMWYL1_0959
MSP266779 MESO_2687
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR394221
MLOT266835 MLL4934
MLEP272631
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MFLA265072 MFLA_1764
MEXT419610 MEXT_1198
MCAP340047
MBUR259564 MBUR_1456
MBOV410289 BCG_2878
MBOV233413
MART243272
MAQU351348
MABS561007
LXYL281090
LWEL386043
LSPH444177 BSPH_2704
LSAK314315
LREU557436
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940
JSP375286 MMA_1817
JSP290400 JANN_1756
ILOI283942
HWAL362976 HQ3628A
HSP64091
HSOM228400
HSOM205914
HSAL478009
HNEP81032
HMUK485914
HMAR272569 PNG7126
HINF71421 HI_0536
HINF281310 NTHI0662
HHAL349124
HDUC233412
HAUR316274 HAUR_2451
HARS204773
GVIO251221
GTHE420246
GOXY290633
GKAU235909 GK1927
GFOR411154
GBET391165 GBCGDNIH1_2167
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FRANT
FNUC190304
FNOD381764
FMAG334413
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DSHI398580 DSHI_2360
DRED349161
DNOD246195
DGEO319795
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTET212717
CSUL444179
CSP78
CSAL290398
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMAQ397948
CKLU431943
CJEI306537
CJAP155077
CHUT269798 CHU_1263
CGLU196627 CG0118
CFEL264202
CEFF196164 CE0998
CDIF272563
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272 BPEN_540
CBLO203907
CAULO
CABO218497
BWEI315730
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BTHA271848 BTH_I1493
BSUI470137 BSUIS_A0296
BSUI204722 BR_0273
BSUB
BSP36773 BCEP18194_A4003
BSP107806
BQUI283165
BPUM315750
BPSE320373 BURPS668_3079
BPSE320372 BURPS1710B_A3402
BPSE272560 BPSL2662
BPET94624
BPER257313 BP3166
BPAR257311 BPP3852
BOVI236 GBOORF0297
BMEL359391 BAB1_0303
BMEL224914 BMEI1649
BMAL320389 BMA10247_2060
BMAL320388 BMASAVP1_A0720
BMAL243160 BMA_2187
BLON206672
BLIC279010
BHER314723
BHEN283166
BHAL272558 BH0257
BGAR290434
BFRA295405
BFRA272559
BCLA66692
BCIC186490
BCER572264
BCER405917 BCE_3659
BCER315749
BCER288681
BCER226900
BCEN331272 BCEN2424_0897
BCEN331271 BCEN_0418
BCAN483179 BCAN_A0276
BBUR224326
BBRO257310 BB4320
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAMB398577 BAMMC406_0787
BAMB339670 BAMB_0776
BAFZ390236
BABO262698 BRUAB1_0299
AYEL322098
AURANTIMONAS
ASP76114
ASP62977
ASP232721
ASP1667 ARTH_0246
APHA212042
APER272557
AORE350688
ANAE240017
AMET293826
AMAR234826
ALAI441768
ACEL351607 ACEL_1019
ABOR393595
ABAU360910
AAVE397945 AAVE_3533
AAUR290340 AAUR_0219


Organism features enriched in list (features available for 385 out of the 418 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.007800329
Arrangment:Clusters 0.00076401717
Arrangment:Pairs 0.002808362112
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00991561111
Disease:Wide_range_of_infections 0.00991561111
GC_Content_Range4:0-40 2.125e-7168213
GC_Content_Range4:40-60 4.443e-8118224
GC_Content_Range7:30-40 4.218e-6132166
GC_Content_Range7:50-60 2.925e-944107
Genome_Size_Range5:0-2 0.0019415116155
Genome_Size_Range5:2-4 0.0026326144197
Genome_Size_Range5:4-6 9.629e-796184
Genome_Size_Range9:0-1 9.876e-62727
Genome_Size_Range9:2-3 0.005560090120
Genome_Size_Range9:4-5 0.00277905296
Genome_Size_Range9:5-6 0.00031914488
Genome_Size_Range9:8-10 0.007800329
Gram_Stain:Gram_Neg 0.0034216206333
Gram_Stain:Gram_Pos 3.120e-6121150
Habitat:Aquatic 0.00530955091
Habitat:Host-associated 0.0000813156206
Motility:No 0.0003486116151
Motility:Yes 2.976e-10141267
Optimal_temp.:30-37 0.00481081718
Optimal_temp.:35-37 0.00423511313
Oxygen_Req:Aerobic 3.409e-7148185
Oxygen_Req:Anaerobic 1.564e-1039102
Oxygen_Req:Microaerophilic 0.0001267418
Pathogenic_in:Animal 0.00141895466
Pathogenic_in:Human 0.0002607159213
Pathogenic_in:No 0.0000269127226
Salinity:Non-halophilic 0.006679280106
Shape:Coccus 0.00015176882
Shape:Filament 0.006813417
Shape:Irregular_coccus 4.009e-6217
Shape:Spiral 0.00135451434
Temp._range:Hyperthermophilic 0.0046788923



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 34
Effective number of orgs (counting one per cluster within 468 clusters): 29

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
AFUL224325 ncbi Archaeoglobus fulgidus DSM 4304 0.00005424968
DETH243164 ncbi Dehalococcoides ethenogenes 195 0.00017315748
DSP216389 ncbi Dehalococcoides sp. BAV1 0.00020135858
DSP255470 ncbi Dehalococcoides sp. CBDB1 0.00021825918
MMAZ192952 ncbi Methanosarcina mazei Go1 0.00024606008
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 2661 0.00024723717
CHOM360107 ncbi Campylobacter hominis ATCC BAA-381 0.00029166138
MBAR269797 ncbi Methanosarcina barkeri Fusaro 0.00034446268
HHEP235279 ncbi Helicobacter hepaticus ATCC 51449 0.00046396508
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I 0.00046482366
MACE188937 ncbi Methanosarcina acetivorans C2A 0.00048116538
CJEJ195099 ncbi Campylobacter jejuni RM1221 0.00061086738
CJEJ360109 ncbi Campylobacter jejuni doylei 269.97 0.00062546758
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 11168 0.00072726888
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-176 0.00080586978
CJEJ407148 ncbi Campylobacter jejuni jejuni 81116 0.00095357128
CFET360106 ncbi Campylobacter fetus fetus 82-40 0.00105297218
HBUT415426 ncbi Hyperthermus butylicus DSM 5456 0.00128112806
CCON360104 ncbi Campylobacter concisus 13826 0.00139267478
MKAN190192 ncbi Methanopyrus kandleri AV19 0.00157642906
CCUR360105 ncbi Campylobacter curvus 525.92 0.00159567608
TDEN326298 ncbi Sulfurimonas denitrificans DSM 1251 0.00166307648
MSTA339860 ncbi Methanosphaera stadtmanae DSM 3091 0.00188812996
HACI382638 ncbi Helicobacter acinonychis Sheeba 0.00212715077
NSP387092 ncbi Nitratiruptor sp. SB155-2 0.00248618048
HPYL357544 ncbi Helicobacter pylori HPAG1 0.00256375217
HPY ncbi Helicobacter pylori 26695 0.00256375217
HPYL85963 ncbi Helicobacter pylori J99 0.00273705267
MAEO419665 ncbi Methanococcus aeolicus Nankai-3 0.00430913446
ABUT367737 ncbi Arcobacter butzleri RM4018 0.00437888648
SSP387093 ncbi Sulfurovum sp. NBC37-1 0.00462348708
FSP106370 ncbi Frankia sp. CcI3 0.00510298818
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H 0.00808293836
TERY203124 ncbi Trichodesmium erythraeum IMS101 0.00899239478


Names of the homologs of the genes in the group in each of these orgs
  G7554   EG11805   EG11804   EG11803   EG11802   EG11801   EG10484   EG10483   EG10471   
AFUL224325 AF_1381AF_1369AF_1367AF_1378AF_1380AF_1368AF_1367AF_1378
DETH243164 DET_0111DET_1433DET_1430DET_0109DET_0110DET_1431DET_1430DET_0109
DSP216389 DEHABAV1_0257DEHABAV1_1241DEHABAV1_1238DEHABAV1_0259DEHABAV1_0258DEHABAV1_1239DEHABAV1_1238DEHABAV1_0259
DSP255470 CBDBA130CBDBA1400CBDBA1395CBDBA128CBDBA129CBDBA1397CBDBA1395CBDBA128
MMAZ192952 MM2169MM2164MM2317MM2172MM2176MM2318MM2317MM3044
MJAN243232 MJ_0200MJ_0214MJ_0253MJ_0029MJ_0442MJ_0214MJ_0253
CHOM360107 CHAB381_0861CHAB381_0872CHAB381_0913CHAB381_0864CHAB381_0862CHAB381_0871CHAB381_0913CHAB381_0864
MBAR269797 MBAR_A1847MBAR_A1848MBAR_A1850MBAR_A1844MBAR_A1840MBAR_A1851MBAR_A1850MBAR_A0451
HHEP235279 HH_0056HH_0324HH_0808HH_0059HH_0057HH_0325HH_0808HH_0059
IHOS453591 IGNI_1366IGNI_0825IGNI_0504IGNI_1367IGNI_0355IGNI_0825
MACE188937 MA1141MA1140MA1138MA1144MA1147MA1137MA1138MA0976
CJEJ195099 CJE_1403CJE_0727CJE_0730CJE_1400CJE_1402CJE_0726CJE_0730CJE_1400
CJEJ360109 JJD26997_0458JJD26997_1045JJD26997_1042JJD26997_0462JJD26997_0459JJD26997_1046JJD26997_1042JJD26997_0462
CJEJ192222 CJ1267CCJ0624CJ0627CJ1264CCJ1266CCJ0623CJ0627CJ1264C
CJEJ354242 CJJ81176_1283CJJ81176_0653CJJ81176_0656CJJ81176_1280CJJ81176_1282CJJ81176_0652CJJ81176_0656CJJ81176_1280
CJEJ407148 C8J_1211C8J_0584C8J_0587C8J_1208C8J_1210C8J_0583C8J_0587C8J_1208
CFET360106 CFF8240_0940CFF8240_0932CFF8240_0929CFF8240_0937CFF8240_0939CFF8240_0933CFF8240_0929CFF8240_0937
HBUT415426 HBUT_1371HBUT_0315HBUT_1372HBUT_1368HBUT_0314HBUT_0315
CCON360104 CCC13826_0101CCC13826_1095CCC13826_1092CCC13826_0098CCC13826_0100CCC13826_1096CCC13826_1092CCC13826_0098
MKAN190192 MK0227MK1547MK0266MK1546MK1547MK1624
CCUR360105 CCV52592_1903CCV52592_1892CCV52592_1889CCV52592_1900CCV52592_1902CCV52592_1893CCV52592_1889CCV52592_1900
TDEN326298 TMDEN_1436TMDEN_1429TMDEN_1424TMDEN_1433TMDEN_1435TMDEN_1430TMDEN_1424TMDEN_1433
MSTA339860 MSP_1067MSP_1230MSP_1514MSP_1302MSP_1231MSP_1230
HACI382638 HAC_0744HAC_1287HAC_1232HAC_0747HAC_0745HAC_1288HAC_0747
NSP387092 NIS_0963NIS_0975NIS_0979NIS_0966NIS_0964NIS_0974NIS_0979NIS_0966
HPYL357544 HPAG1_0614HPAG1_0879HPAG1_0852HPAG1_0617HPAG1_0615HPAG1_0880HPAG1_0617
HPY HP0631HP0899HP0869HP0634HP0632HP0900HP0634
HPYL85963 JHP0574JHP0836JHP0803JHP0577JHP0575JHP0837JHP0577
MAEO419665 MAEO_1090MAEO_0024MAEO_0777MAEO_0097MAEO_1020MAEO_0777
ABUT367737 ABU_1435ABU_1407ABU_1400ABU_1432ABU_1427ABU_1408ABU_1400ABU_1432
SSP387093 SUN_1663SUN_1648SUN_1644SUN_1642SUN_1662SUN_1649SUN_1644SUN_1642
FSP106370 FRANCCI3_1941FRANCCI3_1946FRANCCI3_1937FRANCCI3_4495FRANCCI3_1076FRANCCI3_1938FRANCCI3_1937FRANCCI3_1075
MTHE187420 MTH783MTH737MTH1300MTH782MTH783MTH737
TERY203124 TERY_3369TERY_0794TERY_0798TERY_3367TERY_3368TERY_0802TERY_0798TERY_3367


Organism features enriched in list (features available for 34 out of the 34 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.000051759
Arrangment:Singles 0.001798225286
Disease:Food_poisoning 0.000939249
Disease:Gastric_inflammation_and_peptic_ulcer_disease 0.003306822
Endospores:No 0.001119221211
GC_Content_Range4:0-40 0.001283321213
GC_Content_Range4:60-100 0.00305672145
GC_Content_Range7:30-40 0.001199618166
GC_Content_Range7:60-70 0.00112881134
Genome_Size_Range5:0-2 3.403e-824155
Genome_Size_Range5:2-4 0.00676925197
Genome_Size_Range5:4-6 0.00444964184
Genome_Size_Range9:1-2 4.182e-1024128
Gram_Stain:Gram_Pos 0.00877673150
Optimal_temp.:35-40 0.009373923
Oxygen_Req:Anaerobic 5.845e-617102
Oxygen_Req:Facultative 6.578e-61201
Oxygen_Req:Microaerophilic 8.452e-8918
Shape:Irregular_coccus 9.200e-7817
Shape:Rod 3.671e-94347
Shape:Spiral 9.165e-121534
Temp._range:Hyperthermophilic 0.0066240523



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
P283-PWY (hydrogen oxidation I (aerobic))78630.6149
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31270.4095
PWY-5673 (nitrate reduction III (dissimilatory))106560.4077



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11805   EG11804   EG11803   EG11802   EG11801   EG10484   EG10483   EG10471   
G75540.9994360.9994440.9989480.9997130.9998490.9993930.9993310.999648
EG118050.9996930.9989540.9994620.9994670.9997290.9996460.999258
EG118040.9991560.9994250.999460.9998410.9998940.999247
EG118030.9991710.9990250.9986740.998690.998583
EG118020.9997720.9993780.999280.999811
EG118010.9993770.9993520.999705
EG104840.9998530.99933
EG104830.999225
EG10471



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PAIRWISE BLAST SCORES:

  G7554   EG11805   EG11804   EG11803   EG11802   EG11801   EG10484   EG10483   EG10471   
G75540.0f0--------
EG11805-0.0f0-------
EG11804--0.0f0----7.7e-28-
EG11803---0.0f0-----
EG11802----0.0f0---5.2e-22
EG11801-----0.0f0---
EG10484------0.0f0--
EG10483--7.7e-28----0.0f0-
EG10471----2.0e-20---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-3821 (HypA-HypB heterodimer) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.222, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9987 EG10484 (hypB) EG10484-MONOMER (accessory protein for nickel incorporation into hydrogenase isoenzymes)
   *in cand* 0.9995 0.9987 EG10483 (hypA) EG10483-MONOMER (accessory protein for nickel incorporation into hydrogenase 3)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9986 EG10471 (hyaD) EG10471-MONOMER (protein involved in processing of HyaA and HyaB proteins)
   *in cand* 0.9996 0.9990 EG11801 (hybC) HYBC-MONOMER (hydrogenase 2, large subunit)
   *in cand* 0.9996 0.9992 EG11802 (hybD) EG11802-MONOMER (predicted maturation peptidase for hydrogenase 2)
   *in cand* 0.9990 0.9986 EG11803 (hybE) EG11803-MONOMER (hydrogenase 2-specific chaperone)
   *in cand* 0.9996 0.9992 EG11804 (hybF) EG11804-MONOMER (protein involved with the maturation of hydrogenases 1 and 2)
   *in cand* 0.9995 0.9990 EG11805 (hybG) EG11805-MONOMER (hydrogenase 2 accessory protein)
   *in cand* 0.9995 0.9989 G7554 (hybO) MONOMER0-145 (hydrogenase 2, small subunit)

- FORMHYDROG2-CPLX (hydrogenase 2) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.222, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9990 EG11801 (hybC) HYBC-MONOMER (hydrogenase 2, large subunit)
   *in cand* 0.9995 0.9989 G7554 (hybO) MONOMER0-145 (hydrogenase 2, small subunit)
             0.9973 0.9948 EG11800 (hybB) EG11800-MONOMER (predicted hydrogenase 2 cytochrome b type component)
             0.9959 0.9896 EG11799 (hybA) HYBA-MONOMER (hydrogenase 2 4Fe-4S ferredoxin-type component)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9986 EG10471 (hyaD) EG10471-MONOMER (protein involved in processing of HyaA and HyaB proteins)
   *in cand* 0.9995 0.9987 EG10483 (hypA) EG10483-MONOMER (accessory protein for nickel incorporation into hydrogenase 3)
   *in cand* 0.9995 0.9987 EG10484 (hypB) EG10484-MONOMER (accessory protein for nickel incorporation into hydrogenase isoenzymes)
   *in cand* 0.9996 0.9992 EG11802 (hybD) EG11802-MONOMER (predicted maturation peptidase for hydrogenase 2)
   *in cand* 0.9990 0.9986 EG11803 (hybE) EG11803-MONOMER (hydrogenase 2-specific chaperone)
   *in cand* 0.9996 0.9992 EG11804 (hybF) EG11804-MONOMER (protein involved with the maturation of hydrogenases 1 and 2)
   *in cand* 0.9995 0.9990 EG11805 (hybG) EG11805-MONOMER (hydrogenase 2 accessory protein)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11801 EG11802 EG11803 EG11804 EG11805 G7554 (centered at EG11802)
EG10483 EG10484 (centered at EG10484)
EG10471 (centered at EG10471)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7554   EG11805   EG11804   EG11803   EG11802   EG11801   EG10484   EG10483   EG10471   
156/623167/623191/62357/623164/623197/623317/623172/623153/623
AAEO224324:0:Tyes207-245-020432450
AAUR290340:2:Tyes------0--
AAVE397945:0:Tyes------0--
ABAC204669:0:Tyes33417841-33453344013345
ABUT367737:0:Tyes3570-32278032
ACAU438753:0:Tyes01297311093
ACEL351607:0:Tyes-----0---
ACRY349163:8:Tyes1205-911459
ADEH290397:0:Tyes104--67016
AEHR187272:0:Tyes1303510122310
AFER243159:0:Tyes7150711-717712710711717
AFUL224325:0:Tyes1420-11131011
AHYD196024:0:Tyes15031011124311
AMAR329726:5:Tyes-16--056-
APLE416269:0:Tyes410119870118
APLE434271:0:Tno8141513121101512
ASAL382245:5:Tyes0151254311124
ASP1667:3:Tyes------0--
ASP62928:0:Tyes01613116114136
AVAR240292:3:Tyes-656660-06486616600
BABO262698:1:Tno------0--
BAMB339670:3:Tno------0--
BAMB398577:3:Tno------0--
BBRO257310:0:Tyes------0--
BCAN483179:1:Tno------0--
BCEN331271:2:Tno------0--
BCEN331272:3:Tyes------0--
BCER405917:1:Tyes------0--
BHAL272558:0:Tyes------0--
BJAP224911:0:Fyes524952365239524152460523852395246
BMAL243160:1:Tno------0--
BMAL320388:1:Tno------0--
BMAL320389:1:Tyes------0--
BMEL224914:1:Tno------0--
BMEL359391:1:Tno------0--
BOVI236:1:Tyes------0--
BPAR257311:0:Tno------0--
BPER257313:0:Tyes------0--
BPSE272560:1:Tyes------0--
BPSE320372:1:Tno------0--
BPSE320373:1:Tno------0--
BSP36773:2:Tyes------0--
BSP376:0:Tyes0141083112103
BSUI204722:1:Tyes------0--
BSUI470137:1:Tno------0--
BTHA271848:1:Tno------0--
BVIE269482:5:Tyes01310-3111103
BXEN266265:0:Tyes-52--032-
CACE272562:0:Tyes0----1---
CACE272562:1:Tyes-0-------
CBEI290402:0:Tyes2----1663-0
CBLO291272:0:Tno------0--
CBOT36826:1:Tno1378-1755--137701755-
CBOT441770:0:Tyes1283-1658--128201658-
CBOT441771:0:Tno1266-2--126502-
CBOT441772:1:Tno1298-1721--129701721-
CBOT498213:1:Tno1-441--0442441-
CBOT508765:1:Tyes5375322--5360534-
CBOT515621:2:Tyes--2---02-
CBOT536232:0:Tno1433-1849--143201849-
CCHL340177:0:Tyes--300--0298300-
CCON360104:2:Tyes1430-11134011
CCUR360105:0:Tyes1430-11134011
CDES477974:0:Tyes0614618-6191617618619
CDIP257309:0:Tyes509-864-8
CEFF196164:0:Fyes------0--
CFET360106:0:Tyes1130-810408
CGLU196627:0:Tyes------0--
CHOM360107:1:Tyes01152-3110523
CHUT269798:0:Tyes------0--
CHYD246194:0:Tyes5-273-2402732
CJEJ192222:0:Tyes62414-62162304621
CJEJ195099:0:Tno65214-64965104649
CJEJ354242:2:Tyes61414-61161304611
CJEJ360109:0:Tyes0558555-315595553
CJEJ407148:0:Tno64514-64264404642
CKOR374847:0:Tyes-4--10---
CMET456442:0:Tyes-----0297--
CPHY357809:0:Tyes--2---0172-
CSP501479:7:Fyes1303-912239
CTEP194439:0:Tyes-10031007-30100610073
DARO159087:0:Tyes7012134111219
DDES207559:0:Tyes843-1-84584401845
DETH243164:0:Tyes212801277-01127812770
DHAF138119:0:Tyes6498883469-0650346834690
DOLE96561:0:Tyes--1232---0--
DPSY177439:2:Tyes048-719-7
DRAD243230:2:Tyes--1---01-
DSHI398580:5:Tyes------0--
DSP216389:0:Tyes010091006-21100710062
DSP255470:0:Tno210891086-01108710860
DVUL882:1:Tyes0-366-214033662
ECAR218491:0:Tyes08105439104
ECOL199310:0:Tno256425572558255925602561212521240
ECOL316407:0:Tno202720202021202220232024175817570
ECOL331111:6:Tno228122732274227522762277184818470
ECOL362663:0:Tno210520982099210021012102171317120
ECOL364106:1:Tno237223652366236723682369204320420
ECOL405955:2:Tyes215918132153215421552156181218110
ECOL409438:6:Tyes228122742275227622772278196919680
ECOL413997:0:Tno018941895189618971898160316023
ECOL439855:4:Tno1093108610871088108910906866850
ECOL469008:0:Tno0765432592601867
ECOL481805:0:Tno0765432912921926
ECOL585034:0:Tno209220852086208720882089177917780
ECOL585035:0:Tno228622792280228122822283191819170
ECOL585055:0:Tno229422872288228922902291189118900
ECOL585056:2:Tno230823012302230323042305189018890
ECOL585057:0:Tno1335132813291330133113327507490
ECOL585397:0:Tno250124942495249624972498204920480
ECOL83334:0:Tno281128042805280628072808250525040
ECOLI:0:Tno207920722073207420752076180318020
ECOO157:0:Tno273027232724272527262727242524240
EFER585054:1:Tyes25772570257125722573257401757
ESP42895:1:Tyes-20---10-
FALN326424:0:Tyes552558548-01549548551
FJOH376686:0:Tyes302-64126
FPHI484022:1:Tyes-039--63839-
FSP106370:0:Tyes870875866-342218678660
FSP1855:0:Tyes89241-89589301895
GBET391165:0:Tyes------0--
GKAU235909:1:Tyes------0--
GMET269799:1:Tyes321803039-32153217230393215
GSUL243231:0:Tyes657185251-06601832510
GURA351605:0:Tyes139314011392-01396139913920
HACI382638:1:Tyes0496449-31497-3
HAUR316274:2:Tyes------0--
HBUT415426:0:Tyes1026-1-1027102301-
HCHE349521:0:Tyes-029--31229-
HHEP235279:0:Tyes0272772-312737723
HINF281310:0:Tyes------0--
HINF374930:0:Tyes-737----0--
HINF71421:0:Tno------0--
HMAR272569:7:Tyes------0--
HMOD498761:0:Tyes1897894-8930895894893
HPY:0:Tno0266235-31267-3
HPYL357544:1:Tyes0269240-31270-3
HPYL85963:0:Tno0259226-31260-3
HWAL362976:1:Tyes------0--
IHOS453591:0:Tyes1035-482-15210360482-
JSP290400:1:Tyes------0--
JSP375286:0:Tyes------0--
KPNE272620:2:Tyes-20---10-
LCHO395495:0:Tyes111151112--011131112-
LINT363253:3:Tyes193-1-19619401196
LPNE272624:0:Tno-710-01910-
LPNE297245:1:Fno-69--089-
LPNE297246:1:Fyes-69--089-
LPNE400673:0:Tno-30--910-
LSPH444177:1:Tyes------0--
MACE188937:0:Tyes154153151-1571601501510
MAEO419665:0:Tyes-10500-74372981-743
MAER449447:0:Tyes-48034410--044094410-
MAVI243243:0:Tyes1---720-7
MBAR269797:1:Tyes138213831385-13791375138613850
MBOV410289:0:Tno------0--
MBUR259564:0:Tyes------0--
MCAP243233:0:Tyes4-1354-03135513540
MEXT419610:0:Tyes------0--
MFLA265072:0:Tyes------0--
MGIL350054:3:Tyes-30---10-
MHUN323259:0:Tyes-0--810811965-810
MJAN243232:2:Tyes-175190-2310424190231
MKAN190192:0:Tyes-01327--38132613271403
MLAB410358:0:Tyes-----11487-0
MLOT266835:2:Tyes------0--
MMAG342108:0:Tyes1003102267236
MMAR267377:0:Tyes-10420-10495291233-1049
MMAR368407:0:Tyes----5535460-553
MMAR402880:1:Tyes-2071299-2005920-588
MMAR426368:0:Tyes-0755-751194-7
MMAR444158:0:Tyes-7200-713346526-713
MMAZ192952:0:Tyes50154-812155154890
MPET420662:1:Tyes1403-913239
MSED399549:0:Tyes815--07---
MSME246196:0:Tyes455438457-165104564571
MSP164756:1:Tno9011-129281011-
MSP164757:0:Tno709-1689-
MSP189918:2:Tyes9011-130781011-
MSP266779:3:Tyes------0--
MSP400668:0:Tyes------0--
MSTA339860:0:Tyes-0163-445235164163-
MSUC221988:0:Tyes92892184922923924084923
MTHE187420:0:Tyes--46-056345460
MTHE264732:0:Tyes-03-4823-
MTHE349307:0:Tyes------0--
MTUB336982:0:Tno------0--
MTUB419947:0:Tyes------0--
MVAN350058:0:Tyes494251-4305051-
NMUL323848:3:Tyes-01--921-
NOCE323261:1:Tyes------0--
NPHA348780:2:Tyes------0--
NSP103690:6:Tyes0711-740791211740
NSP387092:0:Tyes01216-3111163
OANT439375:5:Tyes------0--
PABY272844:0:Tyes-6650-280140-0-
PAER208963:0:Tyes------0--
PAER208964:0:Tno------0--
PARS340102:0:Tyes4---01--0
PCRY335284:1:Tyes------0--
PDIS435591:0:Tyes631-97019
PENT384676:0:Tyes------0--
PFLU205922:0:Tyes------0--
PFLU216595:1:Tyes------0--
PFUR186497:0:Tyes-066--791-66-
PHAL326442:1:Tyes------0--
PHOR70601:0:Tyes--952-0642-952-
PING357804:0:Tyes-02--412-
PISL384616:0:Tyes4---01--0
PLUM243265:0:Fyes------0--
PLUT319225:0:Tyes0-13-3112133
PMAR74547:0:Tyes------0--
PNAP365044:8:Tyes12-13811018
PPUT160488:0:Tno------0--
PPUT351746:0:Tyes------0--
PPUT76869:0:Tno------0--
PSP296591:2:Tyes------0--
PSP312153:0:Tyes------0--
PSTU379731:0:Tyes------0--
PSYR205918:0:Tyes------0--
PSYR223283:2:Tyes------0--
PTHE370438:0:Tyes40--35315-3
RALB246199:0:Tyes------0--
RCAS383372:0:Tyes3641654-026516540
RETL347834:5:Tyes------0--
REUT264198:3:Tyes------0--
REUT381666:0:Tyes06990-4191904
RFER338969:1:Tyes0-7643874
RLEG216596:6:Tyes------0--
RMET266264:2:Tyes150250-101425125010
RPAL258594:0:Tyes0141193112113
RPAL316055:0:Tyes0131083111103
RPAL316056:0:Tyes1179813810018
RPAL316057:0:Tyes0141193112113
RPAL316058:0:Tyes------0--
RRUB269796:1:Tyes8500857-853851858857853
RSOL267608:1:Tyes------0--
RSP101510:3:Fyes455245684550-04553455145504558
RSP357808:0:Tyes134360-13461344501346
RSPH272943:4:Tyes0131084111104
RSPH349101:2:Tno0131084111104
RSPH349102:4:Tyes13035912239
SACI56780:0:Tyes--2276--022792276-
SALA317655:0:Fyes-1015--016-3
SAUR158878:1:Tno------0--
SAUR158879:1:Tno------0--
SAUR196620:0:Tno------0--
SAUR273036:0:Tno------0--
SAUR282458:0:Tno------0--
SAUR282459:0:Tno------0--
SAUR359786:1:Tno------0--
SAUR359787:1:Tno------0--
SAUR367830:3:Tno------0--
SAUR418127:0:Tyes------0--
SAUR426430:0:Tno------0--
SAUR93061:0:Fno------0--
SAUR93062:1:Tno------0--
SAVE227882:1:Fyes0107-61876
SBAL399599:3:Tyes1130-810408
SBAL402882:1:Tno1130-810408
SBOY300268:1:Tyes5805875865855845835115120
SCO:2:Fyes------0--
SDYS300267:1:Tyes200020072006200520042003185718560
SELO269084:0:Tyes--2--032-
SENT209261:0:Tno189218851886188718881889158815870
SENT220341:0:Tno1279127212731274127512769789770
SENT295319:0:Tno185618491850185118521853156215610
SENT321314:2:Tno133113241325132613271328102410230
SENT454169:2:Tno135413471348134913501351101310120
SEPI176279:1:Tyes------0--
SEPI176280:0:Tno------0--
SERY405948:0:Tyes21316-0317160
SFLE198214:0:Tyes196619591960196119621963167216710
SFLE373384:0:Tno195719501951195219531954169416950
SFUM335543:0:Tyes301053-12105410531
SHAL458817:0:Tyes0710-316-3
SHIGELLA:0:Tno189018831884188518861887161316120
SLAC55218:0:Fyes------0--
SLOI323850:0:Tyes1030-79407
SMAR399550:0:Tyes-----0---
SMED366394:3:Tyes------0--
SMEL266834:2:Tyes------0--
SONE211586:1:Tyes1030-79407
SPEA398579:0:Tno1030-794-7
SPRO399741:1:Tyes-75--065-
SSAP342451:2:Tyes------0--
SSED425104:0:Tyes10333-79407
SSON300269:1:Tyes205420472048204920502051180218010
SSP1131:0:Tyes------0--
SSP1148:0:Tyes-8941074--80301074-
SSP292414:2:Tyes------0--
SSP321327:0:Tyes------0--
SSP321332:0:Tyes--0---2920-
SSP387093:0:Tyes2162-020720
SSP644076:7:Fyes------0--
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