CANDIDATE ID: 174

CANDIDATE ID: 174

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9930892e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.1111111e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G8207 (gatR_1) (b2087)
   Products of gene:
     - PD02366 (negative DNA-binding transcriptional regulator of galactitol metabolism)
     - PC00063 (GatR transcriptional repressor)
       Regulatees:
        TU00169 (gatYZABCD)

- G7913 (sgcR) (b4300)
   Products of gene:
     - G7913-MONOMER (Putative sgc cluster transcriptional regulator)

- G7854 (ulaR) (b4191)
   Products of gene:
     - G7854-MONOMER (UlaR transcriptional repressor)
       Regulatees:
        TU0-5163 (ulaG)
        TU0-5162 (ulaABCDEF)
     - MONOMER0-2162 (UlaR-L-ascorbate)

- G7630 (agaR) (b3131)
   Products of gene:
     - G7630-MONOMER (AgaR transcriptional repressor)
       Regulatees:
        TU0-6583 (agaSYBCDI)
        TU0-6582 (agaR)
        TU0-6581 (kbaZ-agaVWA)

- G7416 (ygbI) (b2735)
   Products of gene:
     - G7416-MONOMER (predicted DNA-binding transcriptional regulator, DEOR-type)

- G6638 (yciT) (b1284)
   Products of gene:
     - G6638-MONOMER (DNA-binding transcriptional regulator)

- EG12162 (gatR_2) (b2090)
   Products of gene:
     - PD00338 (GatR_2)
     - PC00063 (GatR transcriptional repressor)
       Regulatees:
        TU00169 (gatYZABCD)

- EG10974 (srlR) (b2707)
   Products of gene:
     - PD00283 (GutR transcriptional repressor)
       Regulatees:
        TU00133 (srlAEBD-gutM-srlR-gutQ)
     - MONOMER-56 (GutR-sorbitol)

- EG10353 (fucR) (b2805)
   Products of gene:
     - PD00444 (FucR transcriptional activator)
     - CPLX0-7650 (FucR-L-fuculose-1-phosphate transcriptional activator)
       Regulatees:
        TU00128 (fucPIKUR)
        TU00135 (fucAO)



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 97
Effective number of orgs (counting one per cluster within 468 clusters): 61

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317589
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua9
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO929
YPES187410 ncbi Yersinia pestis KIM 109
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80819
VVUL216895 ncbi Vibrio vulnificus CMCP69
VVUL196600 ncbi Vibrio vulnificus YJ0169
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VFIS312309 ncbi Vibrio fischeri ES1149
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB48
TSP28240 Thermotoga sp.8
TSP1755 Thermoanaerobacter sp.8
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332238
TLET416591 ncbi Thermotoga lettingae TMO9
TFUS269800 ncbi Thermobifida fusca YX8
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT29
STHE292459 ncbi Symbiobacterium thermophilum IAM 148639
SSP94122 ncbi Shewanella sp. ANA-38
SSON300269 ncbi Shigella sonnei Ss0469
SPRO399741 ncbi Serratia proteamaculans 5689
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23388
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4769
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B679
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91509
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT189
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty29
SDYS300267 ncbi Shigella dysenteriae Sd1979
SCO ncbi Streptomyces coelicolor A3(2)8
SBOY300268 ncbi Shigella boydii Sb2279
SAVE227882 ncbi Streptomyces avermitilis MA-46809
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111708
RDEN375451 ncbi Roseobacter denitrificans OCh 1148
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30008
PSP117 Pirellula sp.8
PPRO298386 ncbi Photobacterium profundum SS99
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO18
PFLU220664 ncbi Pseudomonas fluorescens Pf-58
PAER208964 ncbi Pseudomonas aeruginosa PAO19
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA149
OIHE221109 ncbi Oceanobacillus iheyensis HTE8318
MTHE264732 ncbi Moorella thermoacetica ATCC 390739
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E9
MSME246196 ncbi Mycobacterium smegmatis MC2 1558
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53349
LPLA220668 ncbi Lactobacillus plantarum WCFS19
LMON265669 ncbi Listeria monocytogenes 4b F23659
LMON169963 ncbi Listeria monocytogenes EGD-e8
LINN272626 ncbi Listeria innocua Clip112629
KRAD266940 ncbi Kineococcus radiotolerans SRS302169
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785789
HSOM228400 ncbi Haemophilus somnus 23369
HSOM205914 ncbi Haemophilus somnus 129PT9
HMOD498761 ncbi Heliobacterium modesticaldum Ice18
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354699
ECOO157 ncbi Escherichia coli O157:H7 EDL9339
ECOL83334 Escherichia coli O157:H79
ECOL585397 ncbi Escherichia coli ED1a9
ECOL585057 ncbi Escherichia coli IAI399
ECOL585056 ncbi Escherichia coli UMN0269
ECOL585055 ncbi Escherichia coli 559899
ECOL585035 ncbi Escherichia coli S889
ECOL585034 ncbi Escherichia coli IAI19
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL469008 ncbi Escherichia coli BL21(DE3)9
ECOL439855 ncbi Escherichia coli SMS-3-59
ECOL413997 ncbi Escherichia coli B str. REL6069
ECOL409438 ncbi Escherichia coli SE119
ECOL405955 ncbi Escherichia coli APEC O19
ECOL364106 ncbi Escherichia coli UTI899
ECOL362663 ncbi Escherichia coli 5369
ECOL331111 ncbi Escherichia coli E24377A9
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
ECOL199310 ncbi Escherichia coli CFT0739
DRED349161 ncbi Desulfotomaculum reducens MI-18
CSP501479 Citreicella sp. SE459
CNOV386415 ncbi Clostridium novyi NT9
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80528
CACE272562 ncbi Clostridium acetobutylicum ATCC 8249
BSUB ncbi Bacillus subtilis subtilis 1689
BLIC279010 ncbi Bacillus licheniformis ATCC 145809
BHAL272558 ncbi Bacillus halodurans C-1259
BCLA66692 ncbi Bacillus clausii KSM-K169
BAMY326423 ncbi Bacillus amyloliquefaciens FZB429
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4499
AORE350688 ncbi Alkaliphilus oremlandii OhILAs8
AMET293826 ncbi Alkaliphilus metalliredigens QYMF9
AHYD196024 Aeromonas hydrophila dhakensis9
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3459
AAUR290340 ncbi Arthrobacter aurescens TC19


Names of the homologs of the genes in the group in each of these orgs
  G8207   G7913   G7854   G7630   G7416   G6638   EG12162   EG10974   EG10353   
YPSE349747 YPSIP31758_0943YPSIP31758_2746YPSIP31758_3264YPSIP31758_0943YPSIP31758_2145YPSIP31758_0943YPSIP31758_0943YPSIP31758_0943YPSIP31758_3264
YPSE273123 YPTB3075YPTB1272YPTB3075YPTB1936YPTB3075YPTB3075YPTB3075YPTB0803
YPES386656 YPDSF_0683YPDSF_2458YPDSF_0683YPDSF_1186YPDSF_0683YPDSF_0683YPDSF_0683YPDSF_3033
YPES377628 YPN_3033YPN_2741YPN_3033YPN_2741YPN_3033YPN_3033YPN_3033YPN_0766
YPES360102 YPA_0439YPA_0951YPA_2817YPA_0439YPA_1320YPA_0439YPA_0439YPA_0439YPA_2817
YPES349746 YPANGOLA_A3377YPANGOLA_A1460YPANGOLA_A3377YPANGOLA_A2128YPANGOLA_A3377YPANGOLA_A3377YPANGOLA_A3377YPANGOLA_A3757
YPES214092 YPO0831YPO1237YPO3327YPO0831YPO1938YPO0831YPO0831YPO0831YPO3327
YPES187410 Y3216Y2950Y0862Y3216Y2373Y3216Y3216Y3216Y0862
YENT393305 YE1093YE1093YE1093YE2448YE2504YE1978YE2448YE1093YE2675
VVUL216895 VV2_1026VV2_1026VV2_1079VV2_1026VV2_1026VV2_1026VV1_0642VV1_0642VV1_1786
VVUL196600 VVA1520VVA1520VVA1603VVA1520VVA1520VVA1520VV0501VV0501VV2181
VPAR223926 VP0358VP0358VP0358VP0358VPA0303VPA0303VP0358VP2387
VFIS312309 VF2373VFA0238VF2373VFA1006VFA1006VFA1006VFA1006VF2373VFA0238
TTEN273068 TTE1945TTE2588TTE2588TTE2588TTE2588TTE2588TTE2588TTE1945
TSP28240 TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642
TSP1755 TETH514_0575TETH514_0575TETH514_0575TETH514_0575TETH514_0575TETH514_0575TETH514_1079TETH514_1079
TPSE340099 TETH39_0150TETH39_0150TETH39_0150TETH39_0150TETH39_0150TETH39_0150TETH39_0596TETH39_0596
TLET416591 TLET_0826TLET_1417TLET_1417TLET_0826TLET_0826TLET_0826TLET_0826TLET_0826TLET_1417
TFUS269800 TFU_0907TFU_0907TFU_1851TFU_0907TFU_0907TFU_1854TFU_1854TFU_0907
STYP99287 STM3262STM1618STM4381STM2837STM2919STM1704STM3262STM2837STM2979
STHE292459 STH793STH2298STH793STH793STH2298STH793STH793STH793STH793
SSP94122 SHEWANA3_2702SHEWANA3_2702SHEWANA3_4126SHEWANA3_2702SHEWANA3_2702SHEWANA3_2702SHEWANA3_2702SHEWANA3_4126
SSON300269 SSO_2137SSO_2851SSO_4373SSO_2851SSO_2883SSO_1856SSO_2137SSO_2851SSO_2962
SPRO399741 SPRO_3574SPRO_3574SPRO_3574SPRO_3849SPRO_1493SPRO_2643SPRO_3849SPRO_3574SPRO_4640
SHIGELLA GATRSRLRYJFQAGARYGBIS1371GATRSRLRFUCR
SFLE373384 SFV_2145SFV_2798SFV_4347SFV_2798SFV_2768SFV_1297SFV_2145SFV_2798SFV_2884
SFLE198214 AAN43683.1AAN44221.1AAN45763.1AAN44635.1AAN44244.1AAN42900.1AAN43683.1AAN44221.1AAN44306.1
SERY405948 SACE_6315SACE_2135SACE_6315SACE_0763SACE_0763SACE_2135SACE_4547SACE_0763
SENT454169 SEHA_C3557SEHA_C1796SEHA_C4799SEHA_C3023SEHA_C3108SEHA_C1890SEHA_C3557SEHA_C3023SEHA_C3189
SENT321314 SCH_3203SCH_1614SCH_4255SCH_2770SCH_2849SCH_1699SCH_3203SCH_2770SCH_2919
SENT295319 SPA3131SPA1251SPA4198SPA2695SPA2776SPA1172SPA3131SPA2695SPA2843
SENT220341 STY3445STY1446STY4737STY2959STY3044STY1347STY3445STY2959STY3119
SENT209261 T3182T1527T4432T2739T2820T1617T3182T2739T2887
SDYS300267 SDY_2262SDY_2904SDY_4360SDY_2904SDY_2262SDY_1361SDY_2262SDY_2904SDY_3023
SCO SCO3198SCO1043SCO1026SCO1026SCO1026SCO4920SCO1043SCO4920
SBOY300268 SBO_0911SBO_2811SBO_4264SBO_2811SBO_2785SBO_1780SBO_0911SBO_2811SBO_2688
SAVE227882 SAV3690SAV6358SAV1755SAV1433SAV1433SAV1755SAV3339SAV1755SAV1755
RRUB269796 RRU_A1265RRU_A2304RRU_A1265RRU_A1265RRU_A1265RRU_A1265RRU_A1265RRU_A1265
RDEN375451 RD1_2417RD1_2885RD1_3082RD1_2885RD1_2885RD1_2417RD1_2885RD1_2885
PSYR223283 PSPTO_5596PSPTO_0362PSPTO_4169PSPTO_5596PSPTO_0362PSPTO_5596PSPTO_5596PSPTO_5596
PSP117 RB2590RB2590RB2590RB2590RB2590RB2590RB2590RB2590
PPRO298386 PBPRB1035PBPRB1035PBPRB0268PBPRB0140PBPRB1036PBPRB1035PBPRB0140PBPRA3600PBPRA0159
PLUM243265 PLU0832PLU2511PLU0832PLU2511PLU2511PLU0832PLU0832PLU4112
PFLU220664 PFL_6213PFL_3340PFL_0502PFL_6213PFL_3340PFL_0502PFL_6213PFL_6213
PAER208964 PA5550PA3583PA1490PA5550PA1490PA1490PA1490PA5550PA3583
PAER208963 PA14_73190PA14_17940PA14_45150PA14_73190PA14_45150PA14_45150PA14_45150PA14_73190PA14_17940
OIHE221109 OB2808OB0498OB0498OB0498OB2808OB0498OB0498OB0498
MTHE264732 MOTH_0608MOTH_0478MOTH_0478MOTH_0011MOTH_0698MOTH_0011MOTH_0011MOTH_0011MOTH_0698
MSUC221988 MS2316MS0074MS0024MS0187MS1983MS1983MS0187MS2316MS2186
MSME246196 MSMEG_0087MSMEG_0503MSMEG_0503MSMEG_0087MSMEG_0087MSMEG_0509MSMEG_0087MSMEG_0503
LWEL386043 LWE0308LWE2315LWE0308LWE2289LWE2289LWE0308LWE2289LWE2315LWE0564
LPLA220668 LP_3549LP_3598LP_2597LP_3549LP_2095LP_2597LP_3549LP_3549LP_3549
LMON265669 LMOF2365_0372LMOF2365_2337LMOF2365_0372LMOF2365_2307LMOF2365_2307LMOF2365_0372LMOF2365_0372LMOF2365_2337LMOF2365_0394
LMON169963 LMO0352LMO2366LMO0352LMO2337LMO0352LMO0352LMO2366LMO0352
LINN272626 LIN0370LIN2465LIN0370LIN2431LIN2431LIN0370LIN0370LIN2465LIN0400
KRAD266940 KRAD_2162KRAD_2155KRAD_2162KRAD_3971KRAD_3971KRAD_3971KRAD_1535KRAD_1535KRAD_3971
KPNE272620 GKPORF_B2370GKPORF_B0698GKPORF_B3943GKPORF_B2370GKPORF_B0665GKPORF_B0301GKPORF_B3132GKPORF_B2370GKPORF_B2495
HSOM228400 HSM_1036HSM_1400HSM_0567HSM_0567HSM_1902HSM_1902HSM_1036HSM_1082HSM_0585
HSOM205914 HS_1140HS_0922HS_1537HS_1537HS_0011HS_0011HS_1140HS_0673HS_1446
HMOD498761 HM1_2674HM1_2674HM1_2674HM1_2674HM1_2674HM1_2674HM1_2674HM1_2674
ESP42895 ENT638_3571ENT638_3571ENT638_3571ENT638_3571ENT638_2184ENT638_3571ENT638_3571ENT638_3405
EFER585054 EFER_4362EFER_4362EFER_4244EFER_4362EFER_4362EFER_1670EFER_4362EFER_4362EFER_3391
ECOO157 GATRAGARYJFQAGARAGARZ2521AGARSRLRFUCR
ECOL83334 ECS2893ECS4009ECS5167ECS4009ECS4009ECS1857ECS2893ECS3563ECS3665
ECOL585397 ECED1_3156ECED1_3156ECED1_4978ECED1_3793ECED1_3188ECED1_1494ECED1_3793ECED1_3156ECED1_3258
ECOL585057 ECIAI39_0927ECIAI39_2893ECIAI39_4656ECIAI39_3630ECIAI39_3630ECIAI39_1625ECIAI39_0927ECIAI39_2893ECIAI39_3227
ECOL585056 ECUMN_2422ECUMN_4899ECUMN_4724ECUMN_3613ECUMN_3613ECUMN_1587ECUMN_2422ECUMN_3028ECUMN_3134
ECOL585055 EC55989_2344EC55989_2969EC55989_4748EC55989_3549EC55989_3002EC55989_1445EC55989_2344EC55989_2969EC55989_3084
ECOL585035 ECS88_2232ECS88_4911ECS88_4777ECS88_3517ECS88_3002ECS88_1425ECS88_2232ECS88_2970ECS88_3074
ECOL585034 ECIAI1_2164ECIAI1_2799ECIAI1_4424ECIAI1_3279ECIAI1_2830ECIAI1_1308ECIAI1_2164ECIAI1_2799ECIAI1_2915
ECOL481805 ECOLC_1557ECOLC_1005ECOLC_3822ECOLC_0569ECOLC_0977ECOLC_2342ECOLC_1557ECOLC_1005ECOLC_0907
ECOL469008 ECBD_1018ECBD_3739ECBD_3843ECBD_0611ECBD_0989ECBD_2335ECBD_0611ECBD_1018ECBD_0917
ECOL439855 ECSMS35_0974ECSMS35_2830ECSMS35_4661ECSMS35_3428ECSMS35_3428ECSMS35_1844ECSMS35_0974ECSMS35_2830ECSMS35_2946
ECOL413997 ECB_02016ECB_04165ECB_04058ECB_02996ECB_02585ECB_01261ECB_02016ECB_02557ECB_02656
ECOL409438 ECSE_2359ECSE_2955ECSE_4489ECSE_3415ECSE_2983ECSE_1335ECSE_2359ECSE_2955ECSE_3065
ECOL405955 APECO1_4455APECO1_1385APECO1_2201APECO1_3298APECO1_3789APECO1_443APECO1_4455APECO1_3819APECO1_3726
ECOL364106 UTI89_C2363UTI89_C0683UTI89_C4791UTI89_C3560UTI89_C3101UTI89_C1556UTI89_C2363UTI89_C3069UTI89_C3177
ECOL362663 ECP_2128ECP_0699ECP_4436ECP_3221ECP_2713ECP_1337ECP_2128ECP_2667ECP_2788
ECOL331111 ECE24377A_2378ECE24377A_2991ECE24377A_4750ECE24377A_3611ECE24377A_3032ECE24377A_1487ECE24377A_2378ECE24377A_2991ECE24377A_3111
ECOL316407 ECK2702:JW2676:B2707ECK4289:JW4262:B4300ECK4187:JW4149:B4191ECK3119:JW3100:B3131ECK2730:JW2705:B2735ECK1279:JW1276:B1284ECK2083:JW5340+JW2074:B44ECK2702:JW2676:B2707ECK2800:JW2776:B2805
ECOL199310 C2615C0765C5279C3886C3296C1754C2615C3261C3375
DRED349161 DRED_0131DRED_0131DRED_0131DRED_0131DRED_0131DRED_0131DRED_0131DRED_0131
CSP501479 CSE45_3080CSE45_3080CSE45_1114CSE45_3080CSE45_3080CSE45_1155CSE45_1114CSE45_3080CSE45_3080
CNOV386415 NT01CX_0637NT01CX_0637NT01CX_0637NT01CX_0637NT01CX_0637NT01CX_0637NT01CX_0637NT01CX_0637NT01CX_0637
CBEI290402 CBEI_0453CBEI_4553CBEI_0702CBEI_0453CBEI_0702CBEI_1842CBEI_0453CBEI_0453
CACE272562 CAC0231CAC0231CAC2955CAC0231CAC0231CAC1430CAC2955CAC0231CAC1430
BSUB BSU31210BSU31210BSU36300BSU31210BSU36300BSU31210BSU31210BSU31210BSU31210
BLIC279010 BL01895BL02485BL01895BL01895BL02485BL01895BL01895BL01895BL01895
BHAL272558 BH1553BH1553BH2168BH1553BH0801BH1553BH2168BH0847BH1553
BCLA66692 ABC3573ABC3612ABC3612ABC3573ABC0658ABC3573ABC3612ABC3573ABC3612
BAMY326423 RBAM_033520RBAM_036790RBAM_012190RBAM_033520RBAM_012190RBAM_036790RBAM_014120RBAM_036790RBAM_036790
ASAL382245 ASA_3578ASA_3578ASA_2707ASA_3578ASA_3578ASA_3578ASA_4343ASA_3578ASA_2707
AORE350688 CLOS_2546CLOS_2546CLOS_2546CLOS_2546CLOS_2546CLOS_2546CLOS_2546CLOS_2546
AMET293826 AMET_0825AMET_0825AMET_0825AMET_0825AMET_0825AMET_0825AMET_0825AMET_0825AMET_0825
AHYD196024 AHA_0813AHA_1062AHA_2857AHA_0813AHA_1062AHA_2857AHA_0813AHA_4255AHA_1651
ABAC204669 ACID345_3908ACID345_0659ACID345_0659ACID345_3908ACID345_3908ACID345_3908ACID345_3908ACID345_3908ACID345_3908
AAUR290340 AAUR_0296AAUR_0339AAUR_3354AAUR_0350AAUR_0350AAUR_3354AAUR_3354AAUR_0339AAUR_3354


Organism features enriched in list (features available for 90 out of the 97 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.005466426112
Disease:Bubonic_plague 0.000011766
Disease:Dysentery 0.000011766
Disease:Gastroenteritis 9.001e-71013
Endospores:No 0.001884521211
Endospores:Yes 0.00024351853
GC_Content_Range4:0-40 0.000016516213
GC_Content_Range4:40-60 1.446e-1062224
GC_Content_Range4:60-100 0.001879812145
GC_Content_Range7:30-40 0.000991914166
GC_Content_Range7:50-60 4.174e-938107
GC_Content_Range7:60-70 0.00012898134
Genome_Size_Range5:2-4 0.003686220197
Genome_Size_Range5:4-6 9.947e-1561184
Genome_Size_Range9:4-5 2.260e-93696
Genome_Size_Range9:5-6 0.00032692588
Gram_Stain:Gram_Neg 0.004432562333
Habitat:Multiple 0.000198942178
Motility:No 2.436e-67151
Motility:Yes 3.044e-763267
Oxygen_Req:Aerobic 0.000095514185
Oxygen_Req:Facultative 1.722e-1261201
Pathogenic_in:Human 0.000824746213
Shape:Coccus 0.0000524282
Shape:Rod 5.403e-1281347
Temp._range:Mesophilic 0.006584581473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 312
Effective number of orgs (counting one per cluster within 468 clusters): 261

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae1
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80041
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339131
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3061
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138550
SMAR399550 ncbi Staphylothermus marinus F10
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSOL267608 ncbi Ralstonia solanacearum GMI10001
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PRUM264731 ncbi Prevotella ruminicola 230
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP376 Bradyrhizobium sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1101
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G8207   G7913   G7854   G7630   G7416   G6638   EG12162   EG10974   EG10353   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884 XCC-B100_0387
XCAM316273 XCAORF_4154
XCAM314565 XC_0373
XCAM190485 XCC0361
XAXO190486 XAC0361
XAUT78245
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TROS309801
TPEN368408
TPAL243276
TKOD69014
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STOK273063
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SRUB309807
SMAR399550
SFUM335543
SELO269084
SALA317655
SACI56780
SACI330779
RTYP257363
RSOL267608 RSC3044
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_4218
RPAL316055 RPE_1377
RPAL258594 RPA4411
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSP56811
PSP312153
PRUM264731
PNAP365044
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PAST100379
PARS340102
PARC259536
PAER178306
PABY272844
OTSU357244
OCAR504832
NWIN323098
NSP387092
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NEUT335283
NEUR228410
MXAN246197
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632 MSC_0645
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311 MFL179
MFLA265072
MEXT419610 MEXT_1363
MCAP340047 MCAP_0617
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMES203120
LJOH257314
LINT267671
LINT189518
LHEL405566
LDEL390333
LDEL321956
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HHEP235279
HHAL349124
HCHE349521
HBUT415426
HAUR316274
HARS204773
HACI382638
GVIO251221
GURA351605
GSUL243231
GMET269799
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP106370
FRANT
FPHI484022
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DETH243164
DDES207559 DDE_3731
DARO159087
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CHYD246194
CHUT269798
CHOM360107
CFET360106
CFEL264202
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO
CABO218497
BXEN266265 BXE_C1267
BTUR314724
BTRI382640
BTHE226186
BSP376 BRADO1907
BSP107806
BQUI283165
BJAP224911 BLR2433
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP62928
APHA212042
APER272557
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ABUT367737
ABOR393595
AAEO224324


Organism features enriched in list (features available for 295 out of the 312 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.002045699
Arrangment:Chains 1.185e-101992
Arrangment:Pairs 1.801e-1224112
Arrangment:Singles 0.0083587157286
Disease:Pharyngitis 0.004098388
Disease:Pneumonia 0.0023979112
Disease:bronchitis_and_pneumonitis 0.004098388
Endospores:Yes 3.298e-11553
GC_Content_Range4:0-40 0.0051837121213
GC_Content_Range4:60-100 0.000556457145
GC_Content_Range7:0-30 0.00529183247
GC_Content_Range7:60-70 0.001960454134
Genome_Size_Range5:0-2 1.256e-22129155
Genome_Size_Range5:4-6 2.852e-1648184
Genome_Size_Range5:6-10 0.00017461247
Genome_Size_Range9:0-1 5.556e-92727
Genome_Size_Range9:1-2 1.827e-14102128
Genome_Size_Range9:4-5 6.520e-72796
Genome_Size_Range9:5-6 2.133e-82188
Genome_Size_Range9:6-8 0.0000888838
Gram_Stain:Gram_Neg 0.0075078181333
Gram_Stain:Gram_Pos 1.136e-2028150
Habitat:Aquatic 0.00025666191
Habitat:Host-associated 0.0086853116206
Habitat:Multiple 1.917e-762178
Habitat:Specialized 0.00021513953
Habitat:Terrestrial 0.0025413831
Motility:Yes 0.0028462120267
Optimal_temp.:- 0.0007494148257
Oxygen_Req:Aerobic 0.0062651106185
Oxygen_Req:Anaerobic 0.000061269102
Oxygen_Req:Facultative 8.777e-2149201
Oxygen_Req:Microaerophilic 0.00059211618
Pathogenic_in:Human 1.630e-681213
Pathogenic_in:No 0.0030675129226
Salinity:Non-halophilic 0.006340743106
Shape:Coccus 0.00053072882
Shape:Irregular_coccus 7.393e-61717
Shape:Rod 3.274e-11137347
Shape:Sphere 0.00003521819
Shape:Spiral 1.205e-93334
Temp._range:Hyperthermophilic 0.00106091923
Temp._range:Mesophilic 0.0000417221473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 11
Effective number of orgs (counting one per cluster within 468 clusters): 10

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
TLET416591 ncbi Thermotoga lettingae TMO 0.00005387999
LPLA220668 ncbi Lactobacillus plantarum WCFS1 0.000507010249
CNOV386415 ncbi Clostridium novyi NT 0.000884010899
KRAD266940 ncbi Kineococcus radiotolerans SRS30216 0.001625811659
AAUR290340 ncbi Arthrobacter aurescens TC1 0.003160712549
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC5334 0.003493912689
LMON265669 ncbi Listeria monocytogenes 4b F2365 0.004138412929
LINN272626 ncbi Listeria innocua Clip11262 0.004138412929
TSP28240 Thermotoga sp. 0.00462348708
CACE272562 ncbi Clostridium acetobutylicum ATCC 824 0.004721413119
MTHE264732 ncbi Moorella thermoacetica ATCC 39073 0.005091313229


Names of the homologs of the genes in the group in each of these orgs
  G8207   G7913   G7854   G7630   G7416   G6638   EG12162   EG10974   EG10353   
TLET416591 TLET_0826TLET_1417TLET_1417TLET_0826TLET_0826TLET_0826TLET_0826TLET_0826TLET_1417
LPLA220668 LP_3549LP_3598LP_2597LP_3549LP_2095LP_2597LP_3549LP_3549LP_3549
CNOV386415 NT01CX_0637NT01CX_0637NT01CX_0637NT01CX_0637NT01CX_0637NT01CX_0637NT01CX_0637NT01CX_0637NT01CX_0637
KRAD266940 KRAD_2162KRAD_2155KRAD_2162KRAD_3971KRAD_3971KRAD_3971KRAD_1535KRAD_1535KRAD_3971
AAUR290340 AAUR_0296AAUR_0339AAUR_3354AAUR_0350AAUR_0350AAUR_3354AAUR_3354AAUR_0339AAUR_3354
LWEL386043 LWE0308LWE2315LWE0308LWE2289LWE2289LWE0308LWE2289LWE2315LWE0564
LMON265669 LMOF2365_0372LMOF2365_2337LMOF2365_0372LMOF2365_2307LMOF2365_2307LMOF2365_0372LMOF2365_0372LMOF2365_2337LMOF2365_0394
LINN272626 LIN0370LIN2465LIN0370LIN2431LIN2431LIN0370LIN0370LIN2465LIN0400
TSP28240 TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642
CACE272562 CAC0231CAC0231CAC2955CAC0231CAC0231CAC1430CAC2955CAC0231CAC1430
MTHE264732 MOTH_0608MOTH_0478MOTH_0478MOTH_0011MOTH_0698MOTH_0011MOTH_0011MOTH_0011MOTH_0698


Organism features enriched in list (features available for 10 out of the 11 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Gram_Stain:Gram_Neg 0.00261621333
Gram_Stain:Gram_Pos 0.00003119150



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
RHAMCAT-PWY (rhamnose degradation)91590.5620
GALACTITOLCAT-PWY (galactitol degradation)73500.5318
ARABCAT-PWY (L-arabinose degradation I)128640.4829
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37310.4728
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121610.4718
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45340.4616
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50360.4598
SORBDEG-PWY (sorbitol degradation II)53370.4562
PWY0-1314 (fructose degradation)224820.4347
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31260.4311
MANNIDEG-PWY (mannitol degradation I)99500.4188
XYLCAT-PWY (xylose degradation I)217780.4108
GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)208750.4000



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7913   G7854   G7630   G7416   G6638   EG12162   EG10974   EG10353   
G82070.9993040.9992520.9998060.9995550.9994850.9996620.999750.999073
G79130.9989840.9993710.999440.9991010.9988020.999410.999155
G78540.9989330.9987960.9992130.998940.9989450.999118
G76300.9997070.9995170.9996690.9998240.999351
G74160.9994650.9992510.9995630.999116
G66380.9992590.9993710.99918
EG121620.9995810.998903
EG109740.999269
EG10353



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PAIRWISE BLAST SCORES:

  G8207   G7913   G7854   G7630   G7416   G6638   EG12162   EG10974   EG10353   
G82070.0f0--3.0e-194.8e-12--6.4e-24-
G7913-0.0f0-4.8e-19---4.2e-20-
G7854--0.0f02.4e-175.0e-17----
G7630---0.0f08.0e-26--5.0e-40-
G7416---2.3e-280.0f0--1.2e-24-
G6638---1.0e-25-0.0f0-2.9e-21-
EG12162---5.4e-12--0.0f0--
EG10974---1.8e-42---0.0f0-
EG10353--------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PC00063 (GatR transcriptional repressor) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.222, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9991 G8207 (gatR_1) PD02366 (negative DNA-binding transcriptional regulator of galactitol metabolism)
   *in cand* 0.9993 0.9988 EG12162 (gatR_2) PD00338 (GatR_2)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9992 0.9989 EG10353 (fucR) PD00444 (FucR transcriptional activator)
   *in cand* 0.9995 0.9989 EG10974 (srlR) PD00283 (GutR transcriptional repressor)
   *in cand* 0.9994 0.9991 G6638 (yciT) G6638-MONOMER (DNA-binding transcriptional regulator)
   *in cand* 0.9994 0.9988 G7416 (ygbI) G7416-MONOMER (predicted DNA-binding transcriptional regulator, DEOR-type)
   *in cand* 0.9996 0.9989 G7630 (agaR) G7630-MONOMER (AgaR transcriptional repressor)
   *in cand* 0.9991 0.9988 G7854 (ulaR) G7854-MONOMER (UlaR transcriptional repressor)
   *in cand* 0.9993 0.9988 G7913 (sgcR) G7913-MONOMER (Putative sgc cluster transcriptional regulator)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12162 G8207 (centered at EG12162)
EG10353 (centered at EG10353)
EG10974 (centered at EG10974)
G6638 (centered at G6638)
G7416 (centered at G7416)
G7630 (centered at G7630)
G7854 (centered at G7854)
G7913 (centered at G7913)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G8207   G7913   G7854   G7630   G7416   G6638   EG12162   EG10974   EG10353   
209/623225/623209/623209/623222/623193/623224/623198/623185/623
AAUR290340:2:Tyes0432989545429892989432989
AAVE397945:0:Tyes00--0----
ABAC204669:0:Tyes327200327232723272327232723272
ABAU360910:0:Tyes0---0000-
ACAU438753:0:Tyes6530-653--06530
ACEL351607:0:Tyes0-000--00
ACRY349163:8:Tyes0-185800--12541254
AHYD196024:0:Tyes023919960239199603308821
AMET293826:0:Tyes000000000
ANAE240017:0:Tyes254-2542540--254-
AORE350688:0:Tyes00-000000
APLE416269:0:Tyes840-915840--0840896
APLE434271:0:Tno872-946872--0872927
ASAL382245:5:Tyes835835083583583515828350
ASP1667:3:Tyes---02369-236902369
ASP232721:2:Tyes-0--0----
BABO262698:0:Tno-020800-208--
BABO262698:1:Tno--------0
BAMB339670:2:Tno--0------
BAMB339670:3:Tno-1977---0---
BAMB398577:1:Tno-----0---
BAMB398577:2:Tno--0------
BAMB398577:3:Tno-0-------
BAMY326423:0:Tyes21312458021310245819324582458
BANT260799:0:Tno2307--2307-02307--
BANT261594:2:Tno2281--2281-02281--
BANT568206:2:Tyes0--0-24470--
BANT592021:2:Tno2439--2439-02439--
BBRO257310:0:Tyes-----000-
BCAN483179:0:Tno-069900-699--
BCEN331271:1:Tno--0------
BCEN331271:2:Tno-1100-0-108901089-
BCEN331272:1:Tyes-0-----11-
BCEN331272:2:Tyes--0------
BCEN331272:3:Tyes---0-00--
BCER226900:1:Tyes2335--23350023350-
BCER288681:0:Tno32853285-22412241022413285-
BCER315749:1:Tyes--0000---
BCER405917:1:Tyes2160--2160-02160--
BCER572264:1:Tno34773477-24032403024033477-
BCLA66692:0:Tyes296029992999296002960299929602999
BHAL272558:0:Tyes77577513907750775139045775
BJAP224911:0:Fyes-0-------
BLIC279010:0:Tyes0290002900000
BLON206672:0:Tyes--000----
BMAL243160:0:Tno----283---0
BMAL243160:1:Tno-0-------
BMAL320388:0:Tno----0---506
BMAL320388:1:Tno-0-------
BMAL320389:0:Tyes----0---409
BMAL320389:1:Tyes-0-------
BMEL224914:0:Tno-6730673673-0--
BMEL359391:0:Tno-019700-197--
BOVI236:0:Tyes-057200-572--
BPAR257311:0:Tno-----000-
BPER257313:0:Tyes0----000-
BPET94624:0:Tyes00----00-
BPSE272560:0:Tyes----0---236
BPSE272560:1:Tyes-0-------
BPSE320372:0:Tno----0---336
BPSE320372:1:Tno-0-------
BPSE320373:0:Tno----0---354
BPSE320373:1:Tno-0-------
BPUM315750:0:Tyes-444-00000444
BSP36773:0:Tyes-0-------
BSP36773:1:Tyes--0------
BSP36773:2:Tyes---0-0--0
BSP376:0:Tyes-0-------
BSUB:0:Tyes0052305230000
BSUI204722:0:Tyes-068600-686--
BSUI470137:0:Tno-065500-655--
BTHA271848:0:Tno----0----
BTHA271848:1:Tno-0---0---
BTHU281309:1:Tno2231--2231223102231--
BTHU412694:1:Tno30033003-20422042020423003-
BVIE269482:6:Tyes--0------
BVIE269482:7:Tyes-1907---0--0
BWEI315730:4:Tyes886--8868868860227-
BXEN266265:0:Tyes-0-------
CACE272562:1:Tyes002742001209274201209
CBEI290402:0:Tyes040232450-245137200
CBOT36826:1:Tno9220-922922922-922922
CBOT441770:0:Tyes8370-837837837-837837
CBOT441771:0:Tno-0-----0329
CBOT441772:1:Tno00-000-00
CBOT498213:1:Tno9240-924924924-924924
CBOT508765:1:Tyes-0988--195216850-
CBOT515621:2:Tyes00-000-00
CBOT536232:0:Tno00-000-00
CDIF272563:1:Tyes00-0-0-0-
CDIP257309:0:Tyes0--0020--
CEFF196164:0:Fyes0-00--0--
CGLU196627:0:Tyes--01806--1806--
CJAP155077:0:Tyes0--00-00-
CJEI306537:0:Tyes0--0--0--
CMIC31964:2:Tyes00325000---
CMIC443906:2:Tyes221822180221822182218---
CNOV386415:0:Tyes000000000
CPER195102:1:Tyes-0--514514-0-
CPER195103:0:Tno-0--478553-0-
CPER289380:3:Tyes----0153---
CPHY357809:0:Tyes0-83400--00
CPSY167879:0:Tyes0--0---0-
CSAL290398:0:Tyes0--0---0-
CSP501479:7:Fyes00-00--00
CSP501479:8:Fyes--0--410--
CSP78:2:Tyes00-0006570-
CTET212717:0:Tyes616616-0---00
CVIO243365:0:Tyes5510-551---551-
DDES207559:0:Tyes0--------
DGEO319795:1:Tyes-0------0
DRAD243230:1:Tyes------0-0
DRED349161:0:Tyes000000-00
DSHI398580:5:Tyes-018260---0-
ECAR218491:0:Tyes-00585585-386-386
ECOL199310:0:Tno18080443130582480963180824472555
ECOL316407:0:Tno14202995289318381448080814201518
ECOL331111:6:Tno8651442313320401481086514421557
ECOL362663:0:Tno14240371925202013635142419672086
ECOL364106:1:Tno16790408828732414873167923822490
ECOL405955:2:Tyes14390372625932128670143920942195
ECOL409438:6:Tyes103516483229211416760103516481758
ECOL413997:0:Tno7482933283117421329074813011399
ECOL439855:4:Tno01808356223802380849018081924
ECOL469008:0:Tno40931153215038017140409309
ECOL481805:0:Tno997437325804091769997437338
ECOL585034:0:Tno8441469304319391499084414691577
ECOL585035:0:Tno7653339321520121514076514821582
ECOL585055:0:Tno8841503323520661535088415031611
ECOL585056:2:Tno8393286312620222022083914501551
ECOL585057:0:Tno01958372827042704709019582304
ECOL585397:0:Tno161116113385222916430222916111712
ECOL83334:0:Tno106022053407220522050106017501853
ECOLI:0:Tno8303073296818891489083414601560
ECOO157:0:Tno70118413010184118410184113861491
EFAE226185:3:Tyes-0----00-
EFER585054:1:Tyes266126612545266126610266126611721
ESP42895:1:Tyes14001400-140014000140014001235
FNUC190304:0:Tyes-00------
FSP1855:0:Tyes---00--0-
GKAU235909:1:Tyes-00-0----
GOXY290633:5:Tyes-18-----0-
GTHE420246:1:Tyes-00-0----
HDUC233412:0:Tyes--187---0-0
HINF281310:0:Tyes------4-0
HINF374930:0:Tyes----404-0
HINF71421:0:Tno-392-39239239243920
HMAR272569:8:Tyes0--00-000
HMOD498761:0:Tyes00000-000
HMUK485914:1:Tyes0--00--00
HSOM205914:1:Tyes1136917152615260011366691442
HSOM228400:0:Tno478837001345134547852420
ILOI283942:0:Tyes---0----0
JSP290400:1:Tyes-05320---00
KPNE272620:2:Tyes2042398357320423650279320422168
KRAD266940:2:Fyes0702730273027306256252730
LCAS321967:1:Tyes5480-------
LCHO395495:0:Tyes0---0-00-
LGAS324831:0:Tyes--0-----0
LINN272626:1:Tno0213902086208600213930
LINT363253:3:Tyes0------0-
LLAC272622:3:Tyes--0-----0
LLAC272622:5:Tyes0----0---
LLAC272623:0:Tyes0-0--0--0
LMON169963:0:Tno020670-20190020670
LMON265669:0:Tyes0194601916191600194621
LPLA220668:0:Tyes1182122743811820438118211821182
LSAK314315:0:Tyes----0-000
LSPH444177:1:Tyes000-0-283--
LWEL386043:0:Tyes02007019811981019812007256
LXYL281090:0:Tyes0---101510150--
MCAP340047:0:Tyes--0------
MEXT419610:0:Tyes------0--
MFLO265311:0:Tyes--------0
MGIL350054:3:Tyes0--00-4740-
MLOT266835:2:Tyes-0389451625207-516251623619
MMYC272632:0:Tyes--0------
MSME246196:0:Tyes041341300419-0413
MSP164756:1:Tno0--00--0-
MSP164757:0:Tno0--00--0-
MSP189918:2:Tyes0--00--0-
MSP266779:3:Tyes-0----0--
MSP400668:0:Tyes-5765755760-575-575
MSUC221988:0:Tyes23655001672023202316723652227
MTHE264732:0:Tyes5874574570666000666
MVAN350058:0:Tyes0--00-54560-
NARO279238:0:Tyes--000--0-
NFAR247156:2:Tyes0-000-0--
NSP35761:1:Tyes0--0139-00139
OANT439375:4:Tyes--662-662-0662662
OANT439375:5:Tyes-0-------
OIHE221109:0:Tyes23560002356-000
PACN267747:0:Tyes0-1306130613061306---
PAER208963:0:Tyes450602205450622052205220545060
PAER208964:0:Tno411721200411700041172120
PATL342610:0:Tyes0--0-0-0-
PCAR338963:0:Tyes-0-000---
PENT384676:0:Tyes4093-04093--40934093-
PFLU205922:0:Tyes3621--3621-036213621-
PFLU216595:1:Tyes36341211-36340121136343634-
PFLU220664:0:Tyes56122794056122794056125612-
PHAL326442:0:Tyes-----0--0
PHAL326442:1:Tyes0--0---0-
PING357804:0:Tyes--0--0--2115
PLUM243265:0:Fyes01719-017191719003324
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