CANDIDATE ID: 179

CANDIDATE ID: 179

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9967456e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:   1.2222265e-34

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7421 (ygbN) (b2740)
   Products of gene:
     - B2740-MONOMER (YgbN Gnt transporter)

- EG12631 (gntU) (b3435 (obsolete))
   Products of gene:
     - GNTU-MONOMER (GntU gluconate Gnt transporter)
       Reactions:
        D-gluconate[periplasmic space] + H+[periplasmic space]  ->  D-gluconate[cytosol] + H+[cytosol]

- EG12629 (gntK) (b3437)
   Products of gene:
     - GLUCONOKINII-MONOMER (GntK)
     - GLUCONOKINII-CPLX (D-gluconate kinase, thermostable)
       Reactions:
        ATP + D-gluconate  ->  ADP + 6-phospho-D-gluconate + 2 H+
         In pathways
         KETOGLUCONMET-PWY (ketogluconate metabolism)
         PWY-5530 (PWY-5530)
         IDNCAT-PWY (L-idonate degradation)
         GLUCONSUPER-PWY (D-gluconate degradation)

- EG12563 (gntP) (b4321)
   Products of gene:
     - GNTP-MONOMER (GntP Gluconate Gnt transporter)
       Reactions:
        D-fructuronate[periplasmic space] + H+[periplasmic space]  ->  D-fructuronate[cytosol] + H+[cytosol]
        D-gluconate[periplasmic space] + H+[periplasmic space]  ->  D-gluconate[cytosol] + H+[cytosol]

- EG12548 (yjhF) (b4296)
   Products of gene:
     - YJHF-MONOMER (YjhF Gnt tranporter)

- EG12539 (idnT) (b4265)
   Products of gene:
     - YJGT-MONOMER (L-idonate / 5-ketogluconate / gluconate transporter)
       Reactions:
        5-dehydro-D-gluconate[periplasmic space] + H+[periplasmic space]  ->  5-dehydro-D-gluconate[cytosol] + H+[cytosol]
        D-gluconate[periplasmic space] + H+[periplasmic space]  ->  D-gluconate[cytosol] + H+[cytosol]
        L-idonate[periplasmic space] + H+[periplasmic space]  ->  L-idonate[cytosol] + H+[cytosol]

- EG12380 (gntT) (b3415)
   Products of gene:
     - GNTT-MONOMER (GntT Gluconate Gnt transporter)
       Reactions:
        D-gluconate[periplasmic space] + H+[periplasmic space]  ->  D-gluconate[cytosol] + H+[cytosol]

- EG12152 (idnK) (b4268)
   Products of gene:
     - GLUCONOKINI-MONOMER (D-gluconate kinase, thermosensitive)
       Reactions:
        ATP + D-gluconate  ->  ADP + 6-phospho-D-gluconate + 2 H+
         In pathways
         KETOGLUCONMET-PWY (ketogluconate metabolism)
         PWY-5530 (PWY-5530)
         IDNCAT-PWY (L-idonate degradation)
         GLUCONSUPER-PWY (D-gluconate degradation)

- EG10250 (dsdX) (b2365)
   Products of gene:
     - DSDX-MONOMER (DsdX Gnt tranporter)



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 126
Effective number of orgs (counting one per cluster within 468 clusters): 76

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM49
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317589
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329539
YPES386656 ncbi Yersinia pestis Pestoides F9
YPES377628 ncbi Yersinia pestis Nepal5169
YPES360102 ncbi Yersinia pestis Antiqua9
YPES349746 ncbi Yersinia pestis Angola9
YPES214092 ncbi Yersinia pestis CO929
YPES187410 ncbi Yersinia pestis KIM 109
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80819
XAUT78245 ncbi Xanthobacter autotrophicus Py29
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106339
VCHO345073 ncbi Vibrio cholerae O3959
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169619
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT29
SSON300269 ncbi Shigella sonnei Ss0469
SPRO399741 ncbi Serratia proteamaculans 5689
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SGLO343509 ncbi Sodalis glossinidius morsitans9
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23389
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4769
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B679
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91509
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT189
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty29
SDYS300267 ncbi Shigella dysenteriae Sd1979
SDEG203122 ncbi Saccharophagus degradans 2-409
SCO ncbi Streptomyces coelicolor A3(2)9
SBOY300268 ncbi Shigella boydii Sb2279
SBAL402882 ncbi Shewanella baltica OS1859
SBAL399599 ncbi Shewanella baltica OS1959
SAVE227882 ncbi Streptomyces avermitilis MA-46809
RSP101510 ncbi Rhodococcus jostii RHA19
RSOL267608 ncbi Ralstonia solanacearum GMI10009
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332099
RMET266264 ncbi Ralstonia metallidurans CH349
REUT381666 ncbi Ralstonia eutropha H169
REUT264198 ncbi Ralstonia eutropha JMP1349
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30009
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a9
PPUT76869 ncbi Pseudomonas putida GB-19
PPUT351746 ncbi Pseudomonas putida F19
PPUT160488 ncbi Pseudomonas putida KT24409
PMUL272843 ncbi Pasteurella multocida multocida Pm709
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO19
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1259
PFLU220664 ncbi Pseudomonas fluorescens Pf-59
PFLU216595 ncbi Pseudomonas fluorescens SBW259
PFLU205922 ncbi Pseudomonas fluorescens Pf0-19
PENT384676 ncbi Pseudomonas entomophila L489
PATL342610 ncbi Pseudoalteromonas atlantica T6c8
PAER208964 ncbi Pseudomonas aeruginosa PAO19
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA149
PACN267747 ncbi Propionibacterium acnes KPA1712029
OANT439375 ncbi Ochrobactrum anthropi ATCC 491889
NMEN374833 ncbi Neisseria meningitidis 0534428
NMEN272831 ncbi Neisseria meningitidis FAM188
NMEN122587 ncbi Neisseria meningitidis Z24918
NMEN122586 ncbi Neisseria meningitidis MC588
NGON242231 ncbi Neisseria gonorrhoeae FA 10908
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-18
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E9
MSP164757 ncbi Mycobacterium sp. JLS8
MSME246196 ncbi Mycobacterium smegmatis MC2 1559
MMAR394221 ncbi Maricaulis maris MCS108
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK8
MABS561007 ncbi Mycobacterium abscessus ATCC 199779
KRAD266940 ncbi Kineococcus radiotolerans SRS302169
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785789
HSOM228400 ncbi Haemophilus somnus 23369
HSOM205914 ncbi Haemophilus somnus 129PT9
GOXY290633 ncbi Gluconobacter oxydans 621H9
ESP42895 Enterobacter sp.9
EFER585054 ncbi Escherichia fergusonii ATCC 354699
ECOO157 ncbi Escherichia coli O157:H7 EDL9339
ECOL83334 Escherichia coli O157:H79
ECOL585397 ncbi Escherichia coli ED1a9
ECOL585057 ncbi Escherichia coli IAI399
ECOL585056 ncbi Escherichia coli UMN0269
ECOL585055 ncbi Escherichia coli 559899
ECOL585035 ncbi Escherichia coli S889
ECOL585034 ncbi Escherichia coli IAI19
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL469008 ncbi Escherichia coli BL21(DE3)9
ECOL439855 ncbi Escherichia coli SMS-3-59
ECOL413997 ncbi Escherichia coli B str. REL6069
ECOL409438 ncbi Escherichia coli SE119
ECOL405955 ncbi Escherichia coli APEC O19
ECOL364106 ncbi Escherichia coli UTI899
ECOL362663 ncbi Escherichia coli 5369
ECOL331111 ncbi Escherichia coli E24377A9
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
ECOL199310 ncbi Escherichia coli CFT0739
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10439
CSAL290398 ncbi Chromohalobacter salexigens DSM 30439
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3829
CMIC31964 ncbi Clavibacter michiganensis sepedonicus9
CJAP155077 Cellvibrio japonicus9
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334068
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130329
CEFF196164 ncbi Corynebacterium efficiens YS-3149
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131299
BVIE269482 ncbi Burkholderia vietnamiensis G49
BTHA271848 ncbi Burkholderia thailandensis E2649
BSP36773 Burkholderia sp.9
BPSE320373 ncbi Burkholderia pseudomallei 6689
BPSE320372 ncbi Burkholderia pseudomallei 1710b9
BPSE272560 ncbi Burkholderia pseudomallei K962439
BMAL320389 ncbi Burkholderia mallei NCTC 102479
BMAL320388 ncbi Burkholderia mallei SAVP19
BMAL243160 ncbi Burkholderia mallei ATCC 233449
BCEN331272 ncbi Burkholderia cenocepacia HI24249
BCEN331271 ncbi Burkholderia cenocepacia AU 10549
BAMB398577 ncbi Burkholderia ambifaria MC40-69
BAMB339670 ncbi Burkholderia ambifaria AMMD9
ASP62977 ncbi Acinetobacter sp. ADP19
ASP1667 Arthrobacter sp.9
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4499
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL039
APLE416269 ncbi Actinobacillus pleuropneumoniae L209
AHYD196024 Aeromonas hydrophila dhakensis9
AAUR290340 ncbi Arthrobacter aurescens TC19


Names of the homologs of the genes in the group in each of these orgs
  G7421   EG12631   EG12629   EG12563   EG12548   EG12539   EG12380   EG12152   EG10250   
ZMOB264203 ZMO1756ZMO1756ZMO1757ZMO1756ZMO1756ZMO1756ZMO1756ZMO1757ZMO1756
YPSE349747 YPSIP31758_4021YPSIP31758_4021YPSIP31758_4020YPSIP31758_0693YPSIP31758_4021YPSIP31758_4021YPSIP31758_4021YPSIP31758_1469YPSIP31758_4021
YPSE273123 YPTB3797YPTB3797YPTB3796YPTB3287YPTB3797YPTB3797YPTB3797YPTB2572YPTB3797
YPES386656 YPDSF_3319YPDSF_3319YPDSF_3318YPDSF_3319YPDSF_3319YPDSF_3319YPDSF_3319YPDSF_1950YPDSF_3319
YPES377628 YPN_3603YPN_3603YPN_3602YPN_3207YPN_3603YPN_3603YPN_3603YPN_2135YPN_3603
YPES360102 YPA_3783YPA_3783YPA_3782YPA_3383YPA_3783YPA_3783YPA_3783YPA_2032YPA_3783
YPES349746 YPANGOLA_A4105YPANGOLA_A4105YPANGOLA_A4107YPANGOLA_A4105YPANGOLA_A4105YPANGOLA_A4105YPANGOLA_A4105YPANGOLA_A1801YPANGOLA_A4105
YPES214092 YPO3954YPO3954YPO3953YPO0767YPO3954YPO3954YPO3954YPO2540YPO3954
YPES187410 Y3875Y3875Y3876Y3426Y3875Y3875Y3875Y1646Y3875
YENT393305 YE4021YE4021YE4020YE1023YE4021YE4021YE4021YE1362YE4021
XAUT78245 XAUT_1234XAUT_1234XAUT_1235XAUT_1234XAUT_1234XAUT_1234XAUT_1234XAUT_1235XAUT_1234
VVUL216895 VV1_1101VV1_1101VV1_1100VV1_1101VV1_1101VV1_1101VV1_1101VV1_1100
VVUL196600 VV0061VV0061VV0060VV0061VV0061VV0061VV0061VV0060
VPAR223926 VP0064VP0064VP0063VP0064VP0064VP0064VP0064VP0063VPA0116
VCHO345073 VC0395_A2664VC0395_A2664VC0395_A2665VC0395_A2664VC0395_A2664VC0395_A2664VC0395_A2664VC0395_A2665VC0395_0333
VCHO VC0286VC0286VC0287VC0286VC0286VC0286VC0286VC0287VCA0904
STYP99287 STM3541STM3541STM3542STM3512STM4482STM4482STM3512STM4485STM3801
SSON300269 SSO_2888SSO_3678SSO_3679SSO_3547SSO_4450SSO_4450SSO_3547SSO_4453SSO_3547
SPRO399741 SPRO_1488SPRO_4498SPRO_4497SPRO_4651SPRO_4651SPRO_4651SPRO_4651SPRO_4497SPRO_2450
SHIGELLA GNTTGNTUGNTKGNTPGNTTGNTTGNTTGNTKGNTT
SGLO343509 SG2332SG2332SG2151SG2332SG2332SG2332SG2332SG2151SG2332
SFLE373384 SFV_3423SFV_3423SFV_3445SFV_4205SFV_3423SFV_3423SFV_3423SFV_3445SFV_3423
SFLE198214 AAN44918.1AAN44918.1AAN44919.1AAN45620.1AAN44899.1AAN44899.1AAN44899.1AAN44919.1AAN44899.1
SERY405948 SACE_5302SACE_5302SACE_3356SACE_3358SACE_5302SACE_5302SACE_5302SACE_3356SACE_5302
SENT454169 SEHA_C3850SEHA_C3850SEHA_C3851SEHA_C3820SEHA_C4886SEHA_C4886SEHA_C3820SEHA_C4889SEHA_C4131
SENT321314 SCH_3471SCH_3471SCH_3472SCH_3444SCH_4338SCH_4338SCH_3444SCH_4341SCH_3723
SENT295319 SPA3392SPA3392SPA3393SPA3377SPA4282SPA4282SPA3377SPA4285SPA3652
SENT220341 STY4270STY4270STY4269STY4284STY4284STY4284STY4284STY4269STY3978
SENT209261 T3979T3979T3980T3994T3994T3994T3994T3980T3716
SDYS300267 SDY_3587SDY_3587SDY_3588SDY_3661SDY_3661SDY_3661SDY_3661SDY_3588SDY_3661
SDEG203122 SDE_1892SDE_1892SDE_0904SDE_1892SDE_1892SDE_1892SDE_1892SDE_0904SDE_1892
SCO SCO4991SCO4991SCO1679SCO4991SCO4991SCO4991SCO4991SCO1679SCO4991
SBOY300268 SBO_2780SBO_3433SBO_3434SBO_3404SBO_3404SBO_3404SBO_3404SBO_3434SBO_3404
SBAL402882 SHEW185_4057SHEW185_4057SHEW185_4056SHEW185_4057SHEW185_4057SHEW185_4057SHEW185_4057SHEW185_4056SHEW185_4057
SBAL399599 SBAL195_4175SBAL195_4175SBAL195_4174SBAL195_4175SBAL195_4175SBAL195_4175SBAL195_4175SBAL195_4174SBAL195_4175
SAVE227882 SAV3277SAV6628SAV6629SAV6628SAV6628SAV6628SAV6628SAV6629SAV6628
RSP101510 RHA1_RO02465RHA1_RO02465RHA1_RO03300RHA1_RO02363RHA1_RO02363RHA1_RO02363RHA1_RO02363RHA1_RO03300RHA1_RO02363
RSOL267608 RSP1189RSP1189RSC0441RSP1189RSP1189RSP1189RSP1189RSC0441RSP1189
RSAL288705 RSAL33209_0835RSAL33209_2176RSAL33209_2015RSAL33209_2014RSAL33209_2014RSAL33209_2014RSAL33209_2014RSAL33209_2015RSAL33209_2014
RMET266264 RMET_4774RMET_4774RMET_1046RMET_4774RMET_4774RMET_4774RMET_4774RMET_1046RMET_4774
REUT381666 H16_A3011H16_B1207H16_A1179H16_B1207H16_B1207H16_B1207H16_B1207H16_A1179H16_B1207
REUT264198 REUT_B4018REUT_B4018REUT_A1082REUT_B4018REUT_B4018REUT_B4018REUT_B4018REUT_A1082REUT_B4018
PSYR223283 PSPTO_3565PSPTO_3565PSPTO_3564PSPTO_3565PSPTO_3565PSPTO_3565PSPTO_3565PSPTO_3564PSPTO_3565
PSYR205918 PSYR_3338PSYR_3338PSYR_3337PSYR_3338PSYR_3338PSYR_3338PSYR_3338PSYR_3337PSYR_3338
PPUT76869 PPUTGB1_2523PPUTGB1_2523PPUTGB1_2524PPUTGB1_2523PPUTGB1_2523PPUTGB1_2523PPUTGB1_2523PPUTGB1_2524PPUTGB1_3111
PPUT351746 PPUT_2345PPUT_2345PPUT_2346PPUT_2345PPUT_2345PPUT_2345PPUT_2345PPUT_2346PPUT_3069
PPUT160488 PP_3417PP_3417PP_3416PP_3417PP_3417PP_3417PP_3417PP_3416PP_3417
PMUL272843 PM0793PM0793PM0792PM0793PM0793PM0793PM0793PM0792PM1359
PLUM243265 PLU0498PLU0498PLU0497PLU1969PLU1969PLU0498PLU1969PLU0497PLU1969
PHAL326442 PSHAB0479PSHAB0479PSHAB0480PSHAB0479PSHAB0479PSHAB0479PSHAB0479PSHAB0480PSHAB0479
PFLU220664 PFL_3343PFL_4579PFL_4580PFL_4579PFL_4579PFL_4579PFL_4579PFL_4580PFL_4579
PFLU216595 PFLU2355PFLU4810PFLU4811PFLU4810PFLU4810PFLU4810PFLU4810PFLU4811PFLU4810
PFLU205922 PFL_4335PFL_4335PFL_4336PFL_4335PFL_4335PFL_4335PFL_4335PFL_4336PFL_4335
PENT384676 PSEEN2420PSEEN2420PSEEN2421PSEEN2420PSEEN2420PSEEN2420PSEEN2420PSEEN2421PSEEN2420
PATL342610 PATL_2267PATL_2267PATL_3644PATL_2267PATL_2267PATL_2267PATL_2267PATL_3644
PAER208964 PA2322PA2322PA2321PA2322PA2322PA2322PA2322PA2321PA2322
PAER208963 PA14_34630PA14_34630PA14_34640PA14_34630PA14_34630PA14_34630PA14_34630PA14_34640PA14_34630
PACN267747 PPA0738PPA0738PPA0739PPA0738PPA0738PPA0738PPA0738PPA0739PPA0738
OANT439375 OANT_4271OANT_4271OANT_3755OANT_4271OANT_4271OANT_4271OANT_4271OANT_3755OANT_4271
NMEN374833 NMCC_0172NMCC_0172NMCC_0171NMCC_0172NMCC_0172NMCC_0172NMCC_0172NMCC_0171
NMEN272831 NMC2006NMC2006NMC2007NMC2006NMC2006NMC2006NMC2006NMC2007
NMEN122587 NMA0413NMA0413NMA0412NMA0413NMA0413NMA0413NMA0413NMA0412
NMEN122586 NMB_2027NMB_2027NMB_2028NMB_2027NMB_2027NMB_2027NMB_2027NMB_2028
NGON242231 NGO2077NGO2077NGO2076NGO2077NGO2077NGO2077NGO2077NGO2076
MVAN350058 MVAN_5912MVAN_5912MVAN_5911MVAN_5912MVAN_5912MVAN_5912MVAN_5911MVAN_5912
MSUC221988 MS1977MS1977MS0957MS0335MS0688MS1977MS1977MS0957MS1977
MSP164757 MJLS_5708MJLS_5708MJLS_5707MJLS_5708MJLS_5708MJLS_5708MJLS_5707MJLS_5708
MSME246196 MSMEG_3789MSMEG_3789MSMEG_0453MSMEG_0452MSMEG_3789MSMEG_3789MSMEG_3789MSMEG_0453MSMEG_3789
MMAR394221 MMAR10_2727MMAR10_2727MMAR10_2730MMAR10_2727MMAR10_2727MMAR10_2727MMAR10_2727MMAR10_2730
MGIL350054 MFLV_0503MFLV_0503MFLV_0502MFLV_0503MFLV_0503MFLV_0503MFLV_0503MFLV_0502
MABS561007 MAB_3634CMAB_3634CMAB_3635CMAB_3634CMAB_3634CMAB_3634CMAB_3634CMAB_3635CMAB_3634C
KRAD266940 KRAD_3894KRAD_3894KRAD_0597KRAD_3894KRAD_3894KRAD_3894KRAD_3894KRAD_0597KRAD_3894
KPNE272620 GKPORF_B0660GKPORF_B3144GKPORF_B3145GKPORF_B3127GKPORF_B3127GKPORF_B3127GKPORF_B3127GKPORF_B4317GKPORF_B3436
HSOM228400 HSM_0701HSM_0701HSM_0704HSM_0701HSM_0701HSM_0701HSM_0701HSM_0704HSM_1891
HSOM205914 HS_0378HS_0378HS_0379HS_0378HS_1717HS_1717HS_1717HS_0379HS_1717
GOXY290633 GOX2188GOX2188GOX1709GOX2188GOX2188GOX2188GOX2188GOX1709GOX2188
ESP42895 ENT638_3844ENT638_3844ENT638_3845ENT638_3828ENT638_3828ENT638_3828ENT638_3828ENT638_3845ENT638_3828
EFER585054 EFER_3412EFER_3412EFER_3413EFER_3384EFER_3384EFER_3384EFER_3384EFER_3413EFER_3972
ECOO157 GNTUGNTUGNTKGNTPGNTTGNTTGNTTGNTKGNTT
ECOL83334 ECS4285ECS4285ECS4286ECS5280ECS4257ECS4257ECS4257ECS4286ECS4257
ECOL585397 ECED1_3193ECED1_4110ECED1_4111ECED1_4076ECED1_4076ECED1_4076ECED1_4076ECED1_5122ECED1_2812
ECOL585057 ECIAI39_3918ECIAI39_3918ECIAI39_3919ECIAI39_4794ECIAI39_4738ECIAI39_4738ECIAI39_3896ECIAI39_4741ECIAI39_4220
ECOL585056 ECUMN_3899ECUMN_3899ECUMN_3900ECUMN_4928ECUMN_4895ECUMN_4797ECUMN_3874ECUMN_4800ECUMN_3874
ECOL585055 EC55989_3007EC55989_3845EC55989_3846EC55989_4985EC55989_4823EC55989_4823EC55989_3823EC55989_4826EC55989_3823
ECOL585035 ECS88_3007ECS88_3833ECS88_3834ECS88_4939ECS88_4907ECS88_3804ECS88_3804ECS88_3834ECS88_2559
ECOL585034 ECIAI1_2835ECIAI1_3581ECIAI1_3582ECIAI1_4537ECIAI1_3559ECIAI1_3559ECIAI1_3559ECIAI1_3582ECIAI1_3559
ECOL481805 ECOLC_0972ECOLC_0277ECOLC_0276ECOLC_0298ECOLC_0298ECOLC_0298ECOLC_0298ECOLC_0276ECOLC_1304
ECOL469008 ECBD_0984ECBD_0307ECBD_0306ECBD_3714ECBD_0330ECBD_3771ECBD_0330ECBD_3768ECBD_1307
ECOL439855 ECSMS35_3719ECSMS35_3719ECSMS35_3720ECSMS35_4848ECSMS35_4746ECSMS35_4746ECSMS35_3696ECSMS35_4749ECSMS35_2515
ECOL413997 ECB_02590ECB_03287ECB_03288ECB_04190ECB_04131ECB_04131ECB_03267ECB_04134ECB_02275
ECOL409438 ECSE_2988ECSE_3704ECSE_3705ECSE_4594ECSE_3682ECSE_3682ECSE_3682ECSE_3705ECSE_3682
ECOL405955 APECO1_37842APECO1_3022APECO1_3021APECO1_3051APECO1_2129APECO1_2129APECO1_3051APECO1_2126APECO1_4171
ECOL364106 UTI89_C3106UTI89_C3944UTI89_C3945UTI89_C3916UTI89_C4872UTI89_C4872UTI89_C3916UTI89_C4875UTI89_C4956
ECOL362663 ECP_2719ECP_3531ECP_3532ECP_3501ECP_4514ECP_4514ECP_3501ECP_3532ECP_4591
ECOL331111 ECE24377A_3037ECE24377A_3914ECE24377A_3915ECE24377A_4919ECE24377A_3891ECE24377A_3891ECE24377A_3891ECE24377A_3915ECE24377A_3891
ECOL316407 ECK2735:JW2710:B2740ECK3421:JW5686:B4476ECK3422:JW3400:B3437ECK4312:JW4284:B4321ECK4285:JW4258:B4296ECK4258:JW4222:B4265ECK3402:JW5690:B3415ECK4261:JW4225:B4268ECK2361:JW2362:B2365
ECOL199310 C3301C4224C4225C5401C5366C5366C4192C5369C2900
ECAR218491 ECA4331ECA1840ECA1839ECA1840ECA1840ECA1840ECA1840ECA1839ECA1840
CSAL290398 CSAL_0925CSAL_0925CSAL_0926CSAL_0925CSAL_0925CSAL_0925CSAL_0925CSAL_0926CSAL_0925
CMIC443906 CMM_2908CMM_2908CMM_2271CMM_2908CMM_2908CMM_2908CMM_2908CMM_2271CMM_2908
CMIC31964 CMS3035CMS3035CMS2465CMS3035CMS3035CMS3035CMS3035CMS2465CMS3035
CJAP155077 CJA_0346CJA_0346CJA_0846CJA_0346CJA_0346CJA_0346CJA_0346CJA_0846CJA_0346
CHUT269798 CHU_1403CHU_1404CHU_1403CHU_1403CHU_1403CHU_1403CHU_1404CHU_1403
CGLU196627 CG3216CG3216CG2732CG3216CG3216CG3216CG3216CG2732CG3216
CEFF196164 CE0611CE0611CE2384CE0611CE0611CE0611CE0611CE2384CE0611
CDIP257309 DIP2078DIP0253DIP0254DIP0253DIP0253DIP0253DIP0253DIP0254DIP0253
BVIE269482 BCEP1808_0630BCEP1808_0630BCEP1808_0631BCEP1808_0630BCEP1808_0630BCEP1808_0630BCEP1808_0630BCEP1808_0631BCEP1808_0630
BTHA271848 BTH_I1219BTH_I1219BTH_I1220BTH_I1219BTH_I1219BTH_I1219BTH_I1219BTH_I1220BTH_I1219
BSP36773 BCEP18194_A3748BCEP18194_A3748BCEP18194_A3749BCEP18194_A3748BCEP18194_A3748BCEP18194_A3748BCEP18194_A3748BCEP18194_A3749BCEP18194_A3748
BPSE320373 BURPS668_3404BURPS668_3404BURPS668_3403BURPS668_3404BURPS668_3404BURPS668_3404BURPS668_3404BURPS668_3403BURPS668_3404
BPSE320372 BURPS1710B_A3717BURPS1710B_A3717BURPS1710B_A3716BURPS1710B_A3717BURPS1710B_A3717BURPS1710B_A3717BURPS1710B_A3717BURPS1710B_A3716BURPS1710B_A3717
BPSE272560 BPSL2930BPSL2930BPSL2929BPSL2930BPSL2930BPSL2930BPSL2930BPSL2929BPSL2930
BMAL320389 BMA10247_2629BMA10247_2629BMA10247_2628BMA10247_2629BMA10247_2629BMA10247_2629BMA10247_2629BMA10247_2628BMA10247_2629
BMAL320388 BMASAVP1_A0360BMASAVP1_A0360BMASAVP1_A0359BMASAVP1_A0360BMASAVP1_A0360BMASAVP1_A0360BMASAVP1_A0360BMASAVP1_A0359BMASAVP1_A0360
BMAL243160 BMA_2444BMA_2444BMA_2443BMA_2444BMA_2444BMA_2444BMA_2444BMA_2443BMA_2444
BCEN331272 BCEN2424_0662BCEN2424_0662BCEN2424_0663BCEN2424_0662BCEN2424_0662BCEN2424_0662BCEN2424_0662BCEN2424_0663BCEN2424_0662
BCEN331271 BCEN_0179BCEN_0179BCEN_0180BCEN_0179BCEN_0179BCEN_0179BCEN_0179BCEN_0180BCEN_0179
BAMB398577 BAMMC406_0583BAMMC406_0583BAMMC406_0584BAMMC406_0583BAMMC406_0583BAMMC406_0583BAMMC406_0583BAMMC406_0584BAMMC406_0583
BAMB339670 BAMB_0557BAMB_0557BAMB_0558BAMB_0557BAMB_0557BAMB_0557BAMB_0557BAMB_0558BAMB_0557
ASP62977 ACIAD0544ACIAD0544ACIAD0545ACIAD0544ACIAD0544ACIAD0544ACIAD0544ACIAD0545ACIAD0544
ASP1667 ARTH_0274ARTH_0274ARTH_0505ARTH_3529ARTH_3529ARTH_3529ARTH_3529ARTH_0505ARTH_0274
ASAL382245 ASA_4111ASA_4111ASA_4110ASA_4111ASA_4111ASA_4111ASA_4111ASA_4110ASA_2939
APLE434271 APJL_1696APJL_1696APJL_1697APJL_1696APJL_1696APJL_1696APJL_1696APJL_1697APJL_1696
APLE416269 APL_1665APL_1665APL_1666APL_1665APL_1665APL_1665APL_1665APL_1666APL_1665
AHYD196024 AHA_0286AHA_0286AHA_0287AHA_0286AHA_0286AHA_0286AHA_0286AHA_0287AHA_0286
AAUR290340 AAUR_0256AAUR_4059AAUR_0530AAUR_2720AAUR_2720AAUR_2720AAUR_2720AAUR_0530AAUR_2720


Organism features enriched in list (features available for 120 out of the 126 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000115592
Arrangment:Pairs 0.000512536112
Arrangment:Singles 0.003740671286
Disease:Bubonic_plague 0.000068766
Disease:Dysentery 0.000068766
Disease:Gastroenteritis 0.00001511013
Disease:Glanders_and_pneumonia 0.008547633
Disease:Melioidosis 0.008547633
Disease:Meningitis_and_septicemia 0.001724344
Disease:Plant_rot 0.008547633
Disease:opportunistic_infections 0.006894045
Endospores:Yes 0.0014500353
GC_Content_Range4:0-40 6.126e-233213
GC_Content_Range4:40-60 4.233e-974224
GC_Content_Range4:60-100 0.000904743145
GC_Content_Range7:30-40 4.622e-163166
GC_Content_Range7:50-60 5.141e-1047107
GC_Content_Range7:60-70 0.007480037134
Genome_Size_Range5:2-4 0.000102524197
Genome_Size_Range5:4-6 2.124e-1169184
Genome_Size_Range5:6-10 5.293e-92747
Genome_Size_Range9:2-3 0.004361615120
Genome_Size_Range9:4-5 0.00120783196
Genome_Size_Range9:5-6 8.491e-83888
Genome_Size_Range9:6-8 1.491e-72238
Gram_Stain:Gram_Neg 1.092e-895333
Gram_Stain:Gram_Pos 0.000768218150
Habitat:Aquatic 0.00962651191
Habitat:Multiple 0.000069954178
Habitat:Specialized 0.0014500353
Motility:No 0.009474722151
Motility:Yes 0.000704370267
Oxygen_Req:Anaerobic 2.660e-83102
Oxygen_Req:Facultative 3.830e-867201
Pathogenic_in:Human 0.000059662213
Pathogenic_in:No 1.722e-625226
Shape:Coccus 0.0069474982
Shape:Rod 8.087e-11101347
Temp._range:Mesophilic 3.093e-8116473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 358
Effective number of orgs (counting one per cluster within 468 clusters): 288

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VFIS312309 ncbi Vibrio fischeri ES1140
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354051
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-10
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PRUM264731 ncbi Prevotella ruminicola 230
PPRO298386 ncbi Photobacterium profundum SS91
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GMET269799 ncbi Geobacter metallireducens GS-150
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP501479 Citreicella sp. SE450
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62928 ncbi Azoarcus sp. BH720
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7421   EG12631   EG12629   EG12563   EG12548   EG12539   EG12380   EG12152   EG10250   
XFAS405440
XFAS183190
XFAS160492
WSUC273121
WPIP955
WPIP80849
VFIS312309
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068
TSP28240
TROS309801
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TKOD69014
TELO197221
TDEN326298
TDEN292415
TDEN243275 TDE_0207
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076
SSP387093
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSOL273057
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SLAC55218
SGOR29390
SFUM335543
SELO269084
SDEN318161
SARE391037
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779
RXYL266117
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSP357808
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RMAS416276
RFEL315456
RDEN375451
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSP312153
PRUM264731
PPRO298386 PBPRB1409
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PCAR338963
PAST100379
PARS340102
PARC259536
PAER178306
PABY272844
OTSU357244
NSP387092
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NEUT335283
NEUR228410
NARO279238
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MFLA265072
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
LXYL281090
LWEL386043
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMON265669
LMON169963
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286
JSP290400
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMAR272569
HINF374930
HINF281310
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HARS204773
HACI382638
GURA351605
GSUL243231
GMET269799
GKAU235909
GFOR411154
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FMAG334413
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580
DRED349161
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DGEO319795
DETH243164
DDES207559
DARO159087
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP501479
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102
CPEL335992
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CHYD246194
CHOM360107
CFET360106
CFEL264202
CDES477974
CCUR360105 CCV52592_0611
CCON360104 CCC13826_2190
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT441771
CBLO291272
CBLO203907
CBEI290402
CAULO
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSUI470137
BSUI204722
BSP107806
BQUI283165
BPET94624
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCAN483179
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
BABO262698
AYEL322098
AURANTIMONAS
ASP76114
ASP62928
APHA212042
APER272557
ANAE240017
AMET293826 AMET_0501
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACEL351607
ACAU438753
ABUT367737
ABOR393595
ABAU360910
AAEO224324


Organism features enriched in list (features available for 334 out of the 358 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00304986492
Arrangment:Clusters 9.237e-6117
Arrangment:Pairs 5.981e-839112
Disease:Wide_range_of_infections 0.00203141111
Endospores:No 0.0007975138211
Endospores:Yes 5.685e-61553
GC_Content_Range4:0-40 4.092e-11159213
GC_Content_Range4:60-100 2.528e-757145
GC_Content_Range7:0-30 0.00026903847
GC_Content_Range7:30-40 5.298e-7121166
GC_Content_Range7:50-60 0.004469950107
GC_Content_Range7:60-70 1.236e-653134
Genome_Size_Range5:0-2 1.316e-37150155
Genome_Size_Range5:2-4 0.0006895130197
Genome_Size_Range5:4-6 5.754e-2351184
Genome_Size_Range5:6-10 1.976e-14347
Genome_Size_Range9:0-1 1.839e-72727
Genome_Size_Range9:1-2 1.323e-28123128
Genome_Size_Range9:4-5 0.00001023696
Genome_Size_Range9:5-6 4.587e-171588
Genome_Size_Range9:6-8 5.140e-11338
Gram_Stain:Gram_Pos 0.000220968150
Habitat:Aquatic 0.00001297091
Habitat:Host-associated 0.0022109133206
Habitat:Multiple 3.680e-970178
Habitat:Specialized 0.00002434453
Habitat:Terrestrial 1.837e-7431
Motility:Yes 2.053e-7123267
Optimal_temp.:30-37 0.0003701318
Oxygen_Req:Anaerobic 1.872e-679102
Oxygen_Req:Facultative 8.140e-983201
Oxygen_Req:Microaerophilic 0.00338751618
Shape:Irregular_coccus 0.00006451717
Shape:Rod 1.461e-19147347
Shape:Sphere 0.00213091719
Shape:Spiral 7.848e-83334
Temp._range:Hyperthermophilic 0.00003582223
Temp._range:Mesophilic 7.773e-8247473
Temp._range:Thermophilic 0.00238382835



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 15
Effective number of orgs (counting one per cluster within 468 clusters): 15

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 13129 0.00005267979
CMIC31964 ncbi Clavibacter michiganensis sepedonicus 0.00010588619
RSAL288705 ncbi Renibacterium salmoninarum ATCC 33209 0.00010808639
PACN267747 ncbi Propionibacterium acnes KPA171202 0.00011268679
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 382 0.00017459109
CEFF196164 ncbi Corynebacterium efficiens YS-314 0.00018529169
CGLU196627 ncbi Corynebacterium glutamicum ATCC 13032 0.00023859429
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM4 0.000455810129
MABS561007 ncbi Mycobacterium abscessus ATCC 19977 0.000476510179
GOXY290633 ncbi Gluconobacter oxydans 621H 0.001305111379
KRAD266940 ncbi Kineococcus radiotolerans SRS30216 0.001625811659
AAUR290340 ncbi Arthrobacter aurescens TC1 0.003160712549
ASP1667 Arthrobacter sp. 0.003323612619
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 33406 0.00827479378
MSME246196 ncbi Mycobacterium smegmatis MC2 155 0.009832814229


Names of the homologs of the genes in the group in each of these orgs
  G7421   EG12631   EG12629   EG12563   EG12548   EG12539   EG12380   EG12152   EG10250   
CDIP257309 DIP2078DIP0253DIP0254DIP0253DIP0253DIP0253DIP0253DIP0254DIP0253
CMIC31964 CMS3035CMS3035CMS2465CMS3035CMS3035CMS3035CMS3035CMS2465CMS3035
RSAL288705 RSAL33209_0835RSAL33209_2176RSAL33209_2015RSAL33209_2014RSAL33209_2014RSAL33209_2014RSAL33209_2014RSAL33209_2015RSAL33209_2014
PACN267747 PPA0738PPA0738PPA0739PPA0738PPA0738PPA0738PPA0738PPA0739PPA0738
CMIC443906 CMM_2908CMM_2908CMM_2271CMM_2908CMM_2908CMM_2908CMM_2908CMM_2271CMM_2908
CEFF196164 CE0611CE0611CE2384CE0611CE0611CE0611CE0611CE2384CE0611
CGLU196627 CG3216CG3216CG2732CG3216CG3216CG3216CG3216CG2732CG3216
ZMOB264203 ZMO1756ZMO1756ZMO1757ZMO1756ZMO1756ZMO1756ZMO1756ZMO1757ZMO1756
MABS561007 MAB_3634CMAB_3634CMAB_3635CMAB_3634CMAB_3634CMAB_3634CMAB_3634CMAB_3635CMAB_3634C
GOXY290633 GOX2188GOX2188GOX1709GOX2188GOX2188GOX2188GOX2188GOX1709GOX2188
KRAD266940 KRAD_3894KRAD_3894KRAD_0597KRAD_3894KRAD_3894KRAD_3894KRAD_3894KRAD_0597KRAD_3894
AAUR290340 AAUR_0256AAUR_4059AAUR_0530AAUR_2720AAUR_2720AAUR_2720AAUR_2720AAUR_0530AAUR_2720
ASP1667 ARTH_0274ARTH_0274ARTH_0505ARTH_3529ARTH_3529ARTH_3529ARTH_3529ARTH_0505ARTH_0274
CHUT269798 CHU_1403CHU_1404CHU_1403CHU_1403CHU_1403CHU_1403CHU_1404CHU_1403
MSME246196 MSMEG_3789MSMEG_3789MSMEG_0453MSMEG_0452MSMEG_3789MSMEG_3789MSMEG_3789MSMEG_0453MSMEG_3789


Organism features enriched in list (features available for 14 out of the 15 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:V-shaped_pairs 0.000536422
Endospores:No 0.001175311211
GC_Content_Range4:60-100 0.00734558145
GC_Content_Range7:70-100 0.0015669311
Gram_Stain:Gram_Neg 0.00567413333
Gram_Stain:Gram_Pos 0.000038911150
Habitat:Multiple 0.001462710178
Motility:No 0.000349010151
Optimal_temp.:25-28 0.000536422
Oxygen_Req:Aerobic 0.00906979185



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73610.5745
PWY0-981 (taurine degradation IV)106700.5164
AST-PWY (arginine degradation II (AST pathway))120750.5141
GLUCONSUPER-PWY (D-gluconate degradation)2291080.5113
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176930.5095
IDNCAT-PWY (L-idonate degradation)2461120.5089
GLUTDEG-PWY (glutamate degradation II)194960.4899
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181000.4684
PWY-5148 (acyl-CoA hydrolysis)2271020.4657
KETOGLUCONMET-PWY (ketogluconate metabolism)103640.4644
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491070.4621
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491070.4621
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50410.4543
PYRUVOX-PWY (pyruvate oxidation pathway)70500.4535
GLUCARDEG-PWY (D-glucarate degradation I)152790.4490
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212960.4480
GLYCOCAT-PWY (glycogen degradation I)2461040.4435
PWY0-1182 (trehalose degradation II (trehalase))70480.4282
ECASYN-PWY (enterobacterial common antigen biosynthesis)191880.4279
P344-PWY (acrylonitrile degradation)210920.4187
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4152
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291180.4119
GLUTAMINDEG-PWY (glutamine degradation I)191860.4106
PWY-46 (putrescine biosynthesis III)138700.4050
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91540.4028



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12631   EG12629   EG12563   EG12548   EG12539   EG12380   EG12152   EG10250   
G74210.9998480.9993580.9998020.9998150.9998130.9998160.9992810.999801
EG126310.9995720.9998310.9998550.9998570.9998580.9994880.999812
EG126290.9994740.9994470.9994510.9994290.9999080.999253
EG125630.9998720.9998680.999880.9994390.999817
EG125480.9999030.9998970.9994420.999851
EG125390.9998980.9994470.999844
EG123800.9993470.999854
EG121520.999156
EG10250



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PAIRWISE BLAST SCORES:

  G7421   EG12631   EG12629   EG12563   EG12548   EG12539   EG12380   EG12152   EG10250   
G74210.0f0--3.0e-428.9e-501.0e-482.0e-52--
EG126319.6e-340.0f0-3.1e-261.5e-333.9e-403.3e-36-1.6e-34
EG12629--0.0f0----1.1e-33-
EG125633.1e-47--0.0f05.9e-692.7e-801.6e-82-2.4e-56
EG125481.4e-355.9e-30-1.2e-470.0f03.8e-742.7e-73-3.7e-44
EG125397.5e-463.1e-47-6.7e-771.6e-910.0f03.3e-123-2.7e-57
EG123801.2e-471.4e-42-2.3e-742.8e-853.5e-1190.0f0-3.1e-56
EG12152--3.5e-39----0.0f0-
EG102503.2e-388.8e-43-1.7e-531.0e-575.6e-574.9e-58-0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- GLUCONSUPER-PWY (D-gluconate degradation) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.222, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9992 EG12152 (idnK) GLUCONOKINI-MONOMER (D-gluconate kinase, thermosensitive)
   *in cand* 0.9995 0.9993 EG12629 (gntK) GLUCONOKINII-MONOMER (GntK)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9992 EG10250 (dsdX) DSDX-MONOMER (DsdX Gnt tranporter)
   *in cand* 0.9998 0.9993 EG12380 (gntT) GNTT-MONOMER (GntT Gluconate Gnt transporter)
   *in cand* 0.9998 0.9994 EG12539 (idnT) YJGT-MONOMER (L-idonate / 5-ketogluconate / gluconate transporter)
   *in cand* 0.9998 0.9994 EG12548 (yjhF) YJHF-MONOMER (YjhF Gnt tranporter)
   *in cand* 0.9998 0.9994 EG12563 (gntP) GNTP-MONOMER (GntP Gluconate Gnt transporter)
   *in cand* 0.9998 0.9995 EG12631 (gntU) GNTU-MONOMER (GntU gluconate Gnt transporter)
   *in cand* 0.9997 0.9993 G7421 (ygbN) B2740-MONOMER (YgbN Gnt transporter)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12629 EG12631 (centered at EG12629)
EG10250 (centered at EG10250)
EG12152 (centered at EG12152)
EG12380 (centered at EG12380)
EG12539 (centered at EG12539)
EG12548 (centered at EG12548)
EG12563 (centered at EG12563)
G7421 (centered at G7421)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7421   EG12631   EG12629   EG12563   EG12548   EG12539   EG12380   EG12152   EG10250   
209/623199/623186/623204/623203/623199/623201/623186/623200/623
AAUR290340:2:Tyes0372526824032403240324032682403
AAVE397945:0:Tyes--0----0-
ABAC204669:0:Tyes--0----0-
ACRY349163:8:Tyes--0----0-
AHYD196024:0:Tyes001000010
AMAR329726:9:Tyes--0----0-
AMET293826:0:Tyes--------0
AORE350688:0:Tyes00-0000-0
APLE416269:0:Tyes001000010
APLE434271:0:Tno001000010
ASAL382245:5:Tyes114011401139114011401140114011390
ASP1667:3:Tyes0023232853285328532852320
ASP232721:2:Tyes--0----0-
ASP62977:0:Tyes001000010
AVAR240292:3:Tyes--0----0-
BAMB339670:3:Tno001000010
BAMB398577:3:Tno001000010
BAMY326423:0:Tyes00-0000-0
BANT260799:0:Tno00-0000-0
BANT261594:2:Tno00-0000-0
BANT568206:2:Tyes00-0000-0
BANT592021:2:Tno00-0000-0
BCEN331271:2:Tno001000010
BCEN331272:3:Tyes001000010
BCER226900:1:Tyes00-0000-0
BCER288681:0:Tno00-0000-0
BCER315749:1:Tyes00-0000-0
BCER405917:1:Tyes00-0000-0
BCER572264:1:Tno00-0000-3140
BCLA66692:0:Tyes00-0000-0
BHAL272558:0:Tyes00-0000-0
BJAP224911:0:Fyes--0----0-
BLIC279010:0:Tyes00-0000-0
BLON206672:0:Tyes--0----0-
BMAL243160:1:Tno110111101
BMAL320388:1:Tno110111101
BMAL320389:1:Tyes110111101
BPSE272560:1:Tyes110111101
BPSE320372:1:Tno110111101
BPSE320373:1:Tno110111101
BPUM315750:0:Tyes4040-0000-40
BSP36773:2:Tyes001000010
BSP376:0:Tyes--0----0-
BSUB:0:Tyes02141-0214121412141-2141
BTHA271848:1:Tno001000010
BTHU281309:1:Tno00-0000-0
BTHU412694:1:Tno00-0000-2784
BVIE269482:7:Tyes001000010
BWEI315730:4:Tyes00-0000-0
BXEN266265:1:Tyes00-0000-0
CACE272562:1:Tyes00-0000-0
CBOT36826:1:Tno00-0000-0
CBOT441770:0:Tyes00-0000-0
CBOT441772:1:Tno00-0000-0
CBOT498213:1:Tno00-0000-0
CBOT508765:1:Tyes00-0000-0
CBOT515621:2:Tyes00-0000-0
CBOT536232:0:Tno00-0000-0
CCON360104:2:Tyes0--------
CCUR360105:0:Tyes0--------
CDIF272563:1:Tyes00-0000-0
CDIP257309:0:Tyes181101000010
CEFF196164:0:Fyes001810000018100
CGLU196627:0:Tyes43043004304304304300430
CHUT269798:0:Tyes-01000010
CJAP155077:0:Tyes0048400004840
CJEI306537:0:Tyes--0----0-
CMIC31964:2:Tyes54654605465465465460546
CMIC443906:2:Tyes65065006506506506500650
CNOV386415:0:Tyes00-0000-0
CPHY357809:0:Tyes00-0000-0
CPSY167879:0:Tyes--0----0-
CSAL290398:0:Tyes001000010
CSP78:2:Tyes--0----0-
CVIO243365:0:Tyes--0----0-
DRAD243230:3:Tyes--0----0-
ECAR218491:0:Tyes254310111101
ECOL199310:0:Tno39813061307246724322432127424350
ECOL316407:0:Tno35914571456192418971869147618720
ECOL331111:6:Tno08498501806826826826850826
ECOL362663:0:Tno0809810779177617767798101851
ECOL364106:1:Tno08318328031750175080317531834
ECOL405955:2:Tyes40011461147111720692069111720720
ECOL409438:6:Tyes07307311654708708708731708
ECOL413997:0:Tno32810341035195018971897101519000
ECOL439855:4:Tno114711471148222621332133112521360
ECOL469008:0:Tno6841034002134522134491021
ECOL481805:0:Tno705102222222201050
ECOL585034:0:Tno07337341649711711711734711
ECOL585035:0:Tno43712371238228322531210121012380
ECOL585055:0:Tno08238241922176717678011770801
ECOL585056:2:Tno252526102899590809110
ECOL585057:0:Tno2222238878358350838312
ECOL585397:0:Tno38212741275124112411241124122490
ECOL83334:0:Tno2828291059000290
ECOLI:0:Tno38110801081198419561926106119290
ECOO157:0:Tno2929301022000300
EFER585054:1:Tyes282829000029568
ESP42895:1:Tyes1616170000170
FJOH376686:0:Tyes00-0000-0
FNOD381764:0:Tyes0--0000-0
FNUC190304:0:Tyes00-0000-0
GBET391165:0:Tyes--0----0-
GOXY290633:5:Tyes47947904794794794790479
GTHE420246:1:Tyes00-0000-0
GVIO251221:0:Tyes--0----0-
HAUR316274:2:Tyes--0----0-
HCHE349521:0:Tyes--0----0-
HINF71421:0:Tno00-0000-0
HMOD498761:0:Tyes00-0000-0
HSOM205914:1:Tyes001013341334133411334
HSOM228400:0:Tno003000031198
KPNE272620:2:Tyes024452446242824282428242835782735
KRAD266940:2:Fyes123112310123112311231123101231
LBRE387344:2:Tyes90-9999-9
LCAS321967:1:Tyes00-0000-0
LCHO395495:0:Tyes--0----0-
LMES203120:1:Tyes00-0000-0
LPLA220668:0:Tyes00-0000-0
LREU557436:0:Tyes0--0000-0
LSAK314315:0:Tyes00-0000-0
LSPH444177:1:Tyes00-0000-0
MABS561007:1:Tyes001000010
MAVI243243:0:Tyes--0----0-
MEXT419610:0:Tyes--0----0-
MGIL350054:3:Tyes11011110-
MLOT266835:2:Tyes--0----0-
MMAR394221:0:Tyes00300003-
MSME246196:0:Tyes331433141033143314331413314
MSP164756:1:Tno11011--01
MSP164757:0:Tno11011-101
MSP189918:2:Tyes11011--01
MSP266779:3:Tyes--0----0-
MSP400668:0:Tyes188618860-1886-18860-
MSUC221988:0:Tyes170017006530370170017006531700
MTHE264732:0:Tyes00-0000-166
MVAN350058:0:Tyes110111-01
MXAN246197:0:Tyes--0----0-
NFAR247156:2:Tyes--0----0-
NGON242231:0:Tyes11011110-
NHAM323097:2:Tyes--0----0-
NMEN122586:0:Tno00100001-
NMEN122587:0:Tyes11011110-
NMEN272831:0:Tno00100001-
NMEN374833:0:Tno11011110-
NSP103690:6:Tyes--0----0-
NSP35761:1:Tyes--0----0-
NWIN323098:0:Tyes--0----0-
OANT439375:4:Tyes51051005105105105100510
OCAR504832:0:Tyes--0----0-
OIHE221109:0:Tyes00-976976976976-976
PACN267747:0:Tyes001000010
PAER208963:0:Tyes001000010
PAER208964:0:Tno110111101
PATL342610:0:Tyes00139900001399-
PCRY335284:1:Tyes0--0----0
PDIS435591:0:Tyes00-0000-0
PENT384676:0:Tyes001000010
PFLU205922:0:Tyes001000010
PFLU216595:1:Tyes023632364236323632363236323642363
PFLU220664:0:Tyes012131214121312131213121312141213
PHAL326442:0:Tyes001000010
PING357804:0:Tyes--0----0-
PLUM243265:0:Fyes110151815181151801518
PMEN399739:0:Tyes0-1146---011460
PMOB403833:0:Tyes00-0000-0
PMUL272843:1:Tyes11011110567
PNAP365044:8:Tyes--0----0-
PPEN278197:0:Tyes00-0000-0
PPRO298386:1:Tyes--------0
PPUT160488:0:Tno110111101
PPUT351746:0:Tyes00100001713
PPUT76869:0:Tno00100001581
PSP117:0:Tyes---0-00--
PSP296591:2:Tyes--0----0-
PSP56811:2:Tyes0---0---0
PSTU379731:0:Tyes--0----0-
PSYR205918:0:Tyes110111101
PSYR223283:2:Tyes110111101
RETL347834:2:Tyes--0------
RETL347834:5:Tyes-------0-
REUT264198:2:Tyes00-0000-0
REUT264198:3:Tyes--0----0-
REUT381666:1:Tyes-0-0000-0
REUT381666:2:Tyes1766-0----0-
RFER338969:1:Tyes--0----0-
RLEG216596:3:Tyes--0------
RLEG216596:6:Tyes-------0-
RMET266264:1:Tyes00-0000-0
RMET266264:2:Tyes--0----0-
RPAL258594:0:Tyes--0----0-
RPAL316055:0:Tyes--0----0-
RPAL316056:0:Tyes--0----0-
RPAL316057:0:Tyes--0----0-
RPAL316058:0:Tyes--0----0-
RRUB269796:1:Tyes00-0000-0
RSAL288705:0:Tyes013411180117911791179117911801179
RSOL267608:0:Tyes00-0000-0
RSOL267608:1:Tyes--0----0-
RSP101510:3:Fyes10210293500009350
SAUR158878:1:Tno00-0000-0
SAUR158879:1:Tno00-0000-0
SAUR196620:0:Tno00-0000-0
SAUR273036:0:Tno00-0000-0
SAUR282458:0:Tno00-0000-0
SAUR282459:0:Tno00-0000-0
SAUR359786:1:Tno00-0000-0
SAUR359787:1:Tno00-0000-0
SAUR367830:3:Tno00-0000-0
SAUR418127:0:Tyes00-0000-0
SAUR426430:0:Tno00-0000-0
SAUR93061:0:Fno00-0000-0
SAUR93062:1:Tno00-0000-0
SAVE227882:1:Fyes034103411341034103410341034113410
SBAL399599:3:Tyes110111101
SBAL402882:1:Tno110111101
SBOY300268:1:Tyes0626627597597597597627597
SCO:2:Fyes335533550335533553355335503355
SDEG203122:0:Tyes100910090100910091009100901009
SDYS300267:1:Tyes00166666666166
SENT209261:0:Tno2422422412562562562562410
SENT220341:0:Tno2442442432582582582582430
SENT295319:0:Tno15151608648640867259
SENT321314:2:Tno27272809169160919281
SENT454169:2:Tno30303101017101701020307
SEPI176279:1:Tyes00-0000-0
SEPI176280:0:Tno00-0000-0
SERY405948:0:Tyes191619160219161916191601916
SFLE198214:0:Tyes191920750000200
SFLE373384:0:Tno0021740000210
SGLO343509:3:Tyes18518501851851851850185
SHAE279808:0:Tyes00-0000-0
SHAL458817:0:Tyes00-0000-0
SHIGELLA:0:Tno2010143202020020
SLOI323850:0:Tyes0-------0
SMED366394:2:Tyes--0----0-
SMEL266834:0:Tyes--0----0-
SONE211586:1:Tyes0-------0
SPEA398579:0:Tno00-0000-0
SPRO399741:1:Tyes03039303831963196319631963038969
SSAP342451:2:Tyes00-0000-0
SSED425104:0:Tyes0-------0
SSON300269:1:Tyes0746747623146814686231471623
SSP94122:1:Tyes0-------0
STHE292459:0:Tyes00-0000-0
STYP99287:1:Tyes27272809609600963289
TDEN243275:0:Tyes---0-----
TERY203124:0:Tyes--0----0-
TFUS269800:0:Tyes--0----0-
TLET416591:0:Tyes0--0000-0
TSP1755:0:Tyes-0-0000-0
TTUR377629:0:Tyes--0----0-
VCHO:0:Tyes00100001-
VCHO:1:Fyes--------0
VCHO345073:0:Tno--------0
VCHO345073:1:Tno00100001-
VPAR223926:0:Tyes--------0
VPAR223926:1:Tyes11011110-
VVUL196600:2:Tyes11011110-
VVUL216895:1:Tno11011110-
XAUT78245:1:Tyes001000010
XAXO190486:0:Tyes--0----0-
XCAM190485:0:Tyes--0----0-
XCAM314565:0:Tno--0----0-
XCAM316273:0:Tno--0----0-
XCAM487884:0:Tno--0----0-
XORY291331:0:Tno--0----0-
XORY342109:0:Tyes--0----0-
XORY360094:0:Tno--0----0-
YENT393305:1:Tyes29092909290802909290929093352909
YPES187410:5:Tno224422442245179122442244224402244
YPES214092:3:Tno308630863085030863086308617103086
YPES349746:2:Tno224922492251224922492249224902249
YPES360102:3:Tyes177917791778136717791779177901779
YPES377628:2:Tno150015001499109715001500150001500
YPES386656:2:Tno137613761375137613761376137601376
YPSE273123:2:Tno12251225122471612251225122501225
YPSE349747:2:Tno32903290328903290329032907653290
ZMOB264203:0:Tyes001000010



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