CANDIDATE ID: 180

CANDIDATE ID: 180

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9930606e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.1111111e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6781 (ddpA) (b1487)
   Products of gene:
     - YDDS-MONOMER (YddS)
     - ABC-59-CPLX (YddO/YddP/YddQ/YddR/YddS ABC transporter)

- G6432 (gsiD) (b0832)
   Products of gene:
     - YLID-MONOMER (GsiD)
     - ABC-49-CPLX (gsiABCD glutathione ABC transporter)
       Reactions:
        glutathione[periplasmic space] + ATP + H2O  ->  glutathione[cytosol] + ADP + phosphate

- G6430 (gsiB) (b0830)
   Products of gene:
     - YLIB-MONOMER (GsiB)
     - ABC-49-CPLX (gsiABCD glutathione ABC transporter)
       Reactions:
        glutathione[periplasmic space] + ATP + H2O  ->  glutathione[cytosol] + ADP + phosphate

- G2002 (sapA) (b1294)
   Products of gene:
     - SAPA-MONOMER (SapA)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG12626 (dppC) (b3542)
   Products of gene:
     - DPPC-MONOMER (DppC)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG12625 (dppB) (b3543)
   Products of gene:
     - DPPB-MONOMER (DppB)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG12076 (nikB) (b3477)
   Products of gene:
     - NIKB-MONOMER (NikB)
     - ABC-20-CPLX (nickel ABC transporter)
       Reactions:
        Ni2+[periplasmic space] + ATP + H2O  ->  Ni2+[cytosol] + ADP + phosphate

- EG12075 (nikA) (b3476)
   Products of gene:
     - NIKA-MONOMER (NikA)
     - ABC-20-CPLX (nickel ABC transporter)
       Reactions:
        Ni2+[periplasmic space] + ATP + H2O  ->  Ni2+[cytosol] + ADP + phosphate

- EG10248 (dppA) (b3544)
   Products of gene:
     - DPPA-MONOMER (DppA)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 134
Effective number of orgs (counting one per cluster within 468 clusters): 86

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
VEIS391735 ncbi Verminephrobacter eiseniae EF01-29
TTHE300852 ncbi Thermus thermophilus HB88
TTHE262724 ncbi Thermus thermophilus HB278
TROS309801 ncbi Thermomicrobium roseum DSM 51599
TLET416591 ncbi Thermotoga lettingae TMO9
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT29
STHE292459 ncbi Symbiobacterium thermophilum IAM 148639
SSP644076 Silicibacter sp. TrichCH4B9
SSP292414 ncbi Ruegeria sp. TM10408
SSON300269 ncbi Shigella sonnei Ss0469
SPRO399741 ncbi Serratia proteamaculans 5689
SMEL266834 ncbi Sinorhizobium meliloti 10219
SMED366394 ncbi Sinorhizobium medicae WSM4199
SLAC55218 Ruegeria lacuscaerulensis8
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4769
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B679
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT189
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty29
SDYS300267 ncbi Shigella dysenteriae Sd1979
SBOY300268 ncbi Shigella boydii Sb2279
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99419
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170258
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170298
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.18
RSOL267608 ncbi Ralstonia solanacearum GMI10008
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111709
RPOM246200 ncbi Ruegeria pomeroyi DSS-39
RMET266264 ncbi Ralstonia metallidurans CH349
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38418
RFER338969 ncbi Rhodoferax ferrireducens T1189
REUT381666 ncbi Ralstonia eutropha H168
RETL347834 ncbi Rhizobium etli CFN 428
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30008
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a8
PSP296591 ncbi Polaromonas sp. JS6669
PPUT351746 ncbi Pseudomonas putida F18
PPUT160488 ncbi Pseudomonas putida KT24408
PFLU220664 ncbi Pseudomonas fluorescens Pf-59
PFLU216595 ncbi Pseudomonas fluorescens SBW258
PFLU205922 ncbi Pseudomonas fluorescens Pf0-18
OIHE221109 ncbi Oceanobacillus iheyensis HTE8318
OANT439375 ncbi Ochrobactrum anthropi ATCC 491889
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E8
MSP409 Methylobacterium sp.9
MSP400668 ncbi Marinomonas sp. MWYL18
MSP266779 ncbi Chelativorans sp. BNC19
MLOT266835 ncbi Mesorhizobium loti MAFF3030998
MACE188937 ncbi Methanosarcina acetivorans C2A9
LSPH444177 ncbi Lysinibacillus sphaericus C3-419
KRAD266940 ncbi Kineococcus radiotolerans SRS302168
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785789
HPYL357544 ncbi Helicobacter pylori HPAG18
HPY ncbi Helicobacter pylori 266958
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237799
HACI382638 ncbi Helicobacter acinonychis Sheeba8
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-29
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255868
ESP42895 Enterobacter sp.9
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9339
ECOL83334 Escherichia coli O157:H79
ECOL585397 ncbi Escherichia coli ED1a9
ECOL585057 ncbi Escherichia coli IAI399
ECOL585056 ncbi Escherichia coli UMN0269
ECOL585055 ncbi Escherichia coli 559899
ECOL585035 ncbi Escherichia coli S889
ECOL585034 ncbi Escherichia coli IAI19
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL469008 ncbi Escherichia coli BL21(DE3)9
ECOL439855 ncbi Escherichia coli SMS-3-59
ECOL413997 ncbi Escherichia coli B str. REL6069
ECOL409438 ncbi Escherichia coli SE119
ECOL405955 ncbi Escherichia coli APEC O19
ECOL364106 ncbi Escherichia coli UTI899
ECOL362663 ncbi Escherichia coli 5369
ECOL331111 ncbi Escherichia coli E24377A9
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
ECOL199310 ncbi Escherichia coli CFT0739
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DRED349161 ncbi Desulfotomaculum reducens MI-19
DRAD243230 ncbi Deinococcus radiodurans R19
DHAF138119 ncbi Desulfitobacterium hafniense Y519
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G209
CSP501479 Citreicella sp. SE459
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29019
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C9
BVIE269482 ncbi Burkholderia vietnamiensis G49
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-278
BTHA271848 ncbi Burkholderia thailandensis E2649
BSP376 Bradyrhizobium sp.9
BSP36773 Burkholderia sp.9
BPUM315750 ncbi Bacillus pumilus SAFR-0329
BPSE320373 ncbi Burkholderia pseudomallei 6689
BPSE320372 ncbi Burkholderia pseudomallei 1710b9
BPSE272560 ncbi Burkholderia pseudomallei K962439
BPET94624 Bordetella petrii9
BPER257313 ncbi Bordetella pertussis Tohama I9
BPAR257311 ncbi Bordetella parapertussis 128229
BOVI236 Brucella ovis9
BMEL359391 ncbi Brucella melitensis biovar Abortus 23088
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M9
BMAL320389 ncbi Burkholderia mallei NCTC 102479
BMAL320388 ncbi Burkholderia mallei SAVP19
BMAL243160 ncbi Burkholderia mallei ATCC 233449
BLIC279010 ncbi Bacillus licheniformis ATCC 145809
BHAL272558 ncbi Bacillus halodurans C-1259
BCLA66692 ncbi Bacillus clausii KSM-K169
BCER288681 ncbi Bacillus cereus E33L8
BCEN331272 ncbi Burkholderia cenocepacia HI24249
BCEN331271 ncbi Burkholderia cenocepacia AU 10549
BBRO257310 ncbi Bordetella bronchiseptica RB509
BANT592021 ncbi Bacillus anthracis A02489
BANT568206 ncbi Bacillus anthracis CDC 6848
BANT261594 ncbi Bacillus anthracis Ames Ancestor9
BANT260799 ncbi Bacillus anthracis Sterne8
BAMB398577 ncbi Burkholderia ambifaria MC40-69
BAMB339670 ncbi Burkholderia ambifaria AMMD9
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL038
APLE416269 ncbi Actinobacillus pleuropneumoniae L208
AORE350688 ncbi Alkaliphilus oremlandii OhILAs8
AMET293826 ncbi Alkaliphilus metalliredigens QYMF9
ABAU360910 ncbi Bordetella avium 197N9
AAVE397945 ncbi Acidovorax citrulli AAC00-19


Names of the homologs of the genes in the group in each of these orgs
  G6781   G6432   G6430   G2002   EG12626   EG12625   EG12076   EG12075   EG10248   
YPSE349747 YPSIP31758_3551YPSIP31758_4073YPSIP31758_4075YPSIP31758_1784YPSIP31758_4073YPSIP31758_4074YPSIP31758_4075YPSIP31758_4075
YPSE273123 YPTB0524YPTB3840YPTB3842YPTB2272YPTB3840YPTB3841YPTB3842YPTB3842
YPES377628 YPN_0640YPN_3650YPN_3652YPN_1815YPN_3650YPN_3651YPN_3652YPN_3652
YPES360102 YPA_2950YPA_3828YPA_3830YPA_1704YPA_3828YPA_3829YPA_3830YPA_3830
YPES214092 YPO2182YPO4001YPO4003YPO2355YPO4001YPO4002YPO4003YPO4003
YPES187410 Y2026Y3828Y3825Y1977Y3828Y3826Y3825Y3825
YENT393305 YE0491YE4081YE4083YE2125YE4081YE4082YE4083YE4083
VEIS391735 VEIS_4121VEIS_4593VEIS_4591VEIS_4121VEIS_1299VEIS_4120VEIS_0746VEIS_0748VEIS_4591
TTHE300852 TTHA1336TTHA1338TTHA1336TTHA1336TTHA1338TTHA1337TTHA1336TTHA1336
TTHE262724 TT_C0973TT_C0971TT_C0971TT_C0973TT_C0972TT_C1270TT_C0971TT_C0971
TROS309801 TRD_A0699TRD_A0701TRD_A0699TRD_A0699TRD_1280TRD_1861TRD_1279TRD_A0699TRD_A0699
TLET416591 TLET_0071TLET_0200TLET_0202TLET_0202TLET_0855TLET_0854TLET_0854TLET_0071TLET_0071
STYP99287 STM3630STM0851STM0849STM1692STM3628STM3629STM0850STM3630STM3630
STHE292459 STH2315STH2313STH2315STH2315STH2313STH2314STH1423STH2315STH2315
SSP644076 SCH4B_2895SCH4B_3405SCH4B_2895SCH4B_2895SCH4B_3405SCH4B_3406SCH4B_3732SCH4B_0930SCH4B_2895
SSP292414 TM1040_2686TM1040_2716TM1040_2686TM1040_2686TM1040_0036TM1040_0037TM1040_2686TM1040_2686
SSON300269 SSO_1637SSO_0814SSO_0812SSO_1846SSO_3848SSO_3847SSO_3715SSO_3714SSO_3846
SPRO399741 SPRO_2347SPRO_1553SPRO_1551SPRO_2629SPRO_0140SPRO_0139SPRO_2348SPRO_1551SPRO_3431
SMEL266834 SMB20476SMA0106SMB20476SMC00786SMC00788SMC00787SMC00787SMA1651SMC00786
SMED366394 SMED_3647SMED_5165SMED_3647SMED_0329SMED_0331SMED_0330SMED_2854SMED_5619SMED_0329
SLAC55218 SL1157_1243SL1157_1240SL1157_0098SL1157_0095SL1157_0096SL1157_0096SL1157_1240SL1157_0098
SHIGELLA S1424S0825S0823SAPADPPCDPPBNIKBNIKADPPA
SFLE373384 SFV_1831SFV_0813SFV_1308SFV_1736SFV_3544SFV_3480SFV_3479SFV_3543
SFLE198214 AAN43403.1AAN42416.1AAN42414.1AAN42910.1AAN45028.1AAN45029.1AAN44954.1AAN44953.1AAN45030.1
SENT454169 SEHA_C3950SEHA_C0981SEHA_C0979SEHA_C1878SEHA_C3948SEHA_C3949SEHA_C0980SEHA_C3950SEHA_C3950
SENT321314 SCH_3561SCH_0846SCH_0844SCH_1685SCH_3559SCH_3560SCH_3560SCH_3561SCH_3561
SENT295319 SPA1904SPA1906SPA1192SPA3485SPA3486SPA1905SPA3487SPA3487
SENT220341 STY4168STY0890STY0888STY1369STY4170STY4169STY0889STY4168STY4168
SENT209261 T3885T2038T2040T1597T3887T3886T2039T3885T3885
SDYS300267 SDY_0757SDY_0755SDY_0757SDY_1638SDY_4565SDY_4566SDY_3632SDY_3631SDY_4567
SBOY300268 SBO_1570SBO_0722SBO_0720SBO_1768SBO_3541SBO_3542SBO_3474SBO_3473SBO_1768
RXYL266117 RXYL_2424RXYL_2422RXYL_2424RXYL_2424RXYL_2422RXYL_2423RXYL_3026RXYL_2424RXYL_2424
RSPH349102 RSPH17025_0372RSPH17025_0374RSPH17025_3963RSPH17025_3963RSPH17025_3965RSPH17025_3964RSPH17025_3964RSPH17025_3963
RSPH349101 RSPH17029_2465RSPH17029_2463RSPH17029_3969RSPH17029_3969RSPH17029_3971RSPH17029_3970RSPH17029_3970RSPH17029_3969
RSPH272943 RSP_0807RSP_0805RSP_3231RSP_3231RSP_3233RSP_3232RSP_3232RSP_3231
RSOL267608 RSC1382RSC1380RSC1380RSC2868RSC1381RSC1381RSC2006RSC1380
RRUB269796 RRU_A1917RRU_A2358RRU_A2356RRU_A2356RRU_A2358RRU_A2357RRU_A2276RRU_A2277RRU_A2356
RPOM246200 SPO_2554SPO_1545SPO_2554SPO_2554SPO_1545SPO_1544SPO_0100SPO_2554SPO_2554
RMET266264 RMET_2496RMET_1410RMET_1408RMET_1408RMET_3156RMET_4576RMET_1409RMET_1408RMET_1408
RLEG216596 PRL90185RL4577PRL90185RL0778RL0780RL0779RL0779RL0778
RFER338969 RFER_3103RFER_3105RFER_3103RFER_1949RFER_1952RFER_1953RFER_0984RFER_3103RFER_1949
REUT381666 H16_A2098H16_A2100H16_A3298H16_A2098H16_B0720H16_A2950H16_A2100H16_A2100
RETL347834 RHE_PB00094RHE_PF00241RHE_PB00094RHE_CH00736RHE_CH00738RHE_CH00737RHE_CH00608RHE_CH00736
PSYR223283 PSPTO_4534PSPTO_3250PSPTO_4561PSPTO_4557PSPTO_4563PSPTO_4562PSPTO_2575PSPTO_4559
PSYR205918 PSYR_4211PSYR_2680PSYR_4238PSYR_4235PSYR_4240PSYR_4239PSYR_2266PSYR_4236
PSP296591 BPRO_4392BPRO_0137BPRO_0139BPRO_2816BPRO_2813BPRO_2812BPRO_2812BPRO_0139BPRO_2816
PPUT351746 PPUT_1878PPUT_1881PPUT_0924PPUT_0924PPUT_0919PPUT_0920PPUT_0920PPUT_0924
PPUT160488 PP_0880PP_0885PP_0885PP_0880PP_0881PP_3343PP_3342PP_0885
PFLU220664 PFL_4024PFL_0876PFL_6050PFL_0881PFL_0876PFL_0877PFL_4025PFL_0881PFL_0881
PFLU216595 PFLU1636PFLU2281PFLU1636PFLU0827PFLU0821PFLU0822PFLU2220PFLU0827
PFLU205922 PFL_5538PFL_0811PFL_0815PFL_0816PFL_0811PFL_0812PFL_0812PFL_0816
OIHE221109 OB0773OB3067OB2451OB2451OB2449OB2450OB2451OB2451
OANT439375 OANT_2957OANT_0628OANT_0626OANT_1582OANT_1584OANT_1583OANT_1583OANT_2957OANT_4405
MSUC221988 MS1366MS2053MS0856MS1366MS1367MS0465MS0466MS2053
MSP409 M446_5142M446_2849M446_1690M446_1690M446_1692M446_1691M446_2973M446_5142M446_1690
MSP400668 MMWYL1_2056MMWYL1_0112MMWYL1_0114MMWYL1_0114MMWYL1_0112MMWYL1_0113MMWYL1_4456MMWYL1_0114
MSP266779 MESO_0038MESO_1504MESO_2408MESO_0067MESO_0065MESO_0066MESO_0066MESO_0563MESO_0067
MLOT266835 MLR6670MLR5515MLR1186MLR5416MLR5418MLR5417MLR5417MLR5416
MACE188937 MA4247MA0880MA4247MA4247MA0880MA4250MA4250MA3455MA3461
LSPH444177 BSPH_0318BSPH_0320BSPH_4232BSPH_0318BSPH_0320BSPH_0319BSPH_2976BSPH_2977BSPH_0318
KRAD266940 KRAD_3863KRAD_3861KRAD_0145KRAD_2998KRAD_3861KRAD_2997KRAD_2997KRAD_2998
KPNE272620 GKPORF_B4995GKPORF_B5300GKPORF_B5298GKPORF_B0330GKPORF_B3250GKPORF_B3251GKPORF_B3195GKPORF_B3194GKPORF_B3252
HPYL357544 HPAG1_0300HPAG1_0302HPAG1_0300HPAG1_0300HPAG1_0302HPAG1_0301HPAG1_0301HPAG1_0300
HPY HP0298HP0300HP0298HP0298HP0300HP0299HP0299HP0298
HAUR316274 HAUR_1605HAUR_1607HAUR_1605HAUR_1605HAUR_1607HAUR_1606HAUR_0369HAUR_1605HAUR_1605
HACI382638 HAC_0559HAC_0561HAC_0559HAC_0559HAC_0561HAC_0560HAC_0560HAC_0559
GTHE420246 GTNG_0478GTNG_0480GTNG_0478GTNG_0478GTNG_0480GTNG_0479GTNG_0479GTNG_0478GTNG_0478
FNUC190304 FN0998FN0398FN0396FN0396FN0398FN0397FN1504FN0396
ESP42895 ENT638_1105ENT638_1326ENT638_1324ENT638_2171ENT638_0186ENT638_0185ENT638_1835ENT638_1834ENT638_2107
EFER585054 EFER_0973EFER_0971EFER_1660EFER_3539EFER_3540EFER_0972EFER_3541EFER_3541
ECOO157 Z2223Z1056Z1054SAPADPPCDPPBNIKBNIKADPPA
ECOL83334 ECS2091ECS0911ECS0909ECS1871ECS4422ECS4423ECS4344ECS4343ECS4424
ECOL585397 ECED1_4811ECED1_0796ECED1_0794ECED1_1509ECED1_4221ECED1_4222ECED1_4150ECED1_4149ECED1_4223
ECOL585057 ECIAI39_1751ECIAI39_0809ECIAI39_0807ECIAI39_1645ECIAI39_4051ECIAI39_4052ECIAI39_3958ECIAI39_3957ECIAI39_4053
ECOL585056 ECUMN_1741ECUMN_1020ECUMN_1018ECUMN_1599ECUMN_4052ECUMN_4053ECUMN_3958ECUMN_3957ECUMN_4055
ECOL585055 EC55989_1619EC55989_0877EC55989_0875EC55989_1456EC55989_3993EC55989_3994EC55989_3885EC55989_3884EC55989_3996
ECOL585035 ECS88_4576ECS88_0849ECS88_0847ECS88_1440ECS88_3962ECS88_3963ECS88_3880ECS88_3879ECS88_3964
ECOL585034 ECIAI1_1497ECIAI1_0871ECIAI1_0869ECIAI1_1319ECIAI1_3700ECIAI1_3701ECIAI1_3624ECIAI1_3623ECIAI1_3703
ECOL481805 ECOLC_2170ECOLC_2812ECOLC_2814ECOLC_2331ECOLC_0173ECOLC_0172ECOLC_0239ECOLC_0240ECOLC_0171
ECOL469008 ECBD_2152ECBD_2791ECBD_2793ECBD_2323ECBD_0194ECBD_0193ECBD_0264ECBD_0265ECBD_0192
ECOL439855 ECSMS35_1686ECSMS35_0857ECSMS35_0855ECSMS35_1828ECSMS35_3861ECSMS35_3862ECSMS35_3761ECSMS35_3760ECSMS35_3863
ECOL413997 ECB_01445ECB_00799ECB_00797ECB_01271ECB_03393ECB_03394ECB_03326ECB_03325ECB_03395
ECOL409438 ECSE_1577ECSE_0890ECSE_0888ECSE_1346ECSE_3815ECSE_3816ECSE_3745ECSE_3744ECSE_3817
ECOL405955 APECO1_2373APECO1_1261APECO1_1263APECO1_457APECO1_2906APECO1_2905APECO1_2977APECO1_2978APECO1_2904
ECOL364106 UTI89_C4674UTI89_C0835UTI89_C0833UTI89_C1571UTI89_C4080UTI89_C4081UTI89_C3994UTI89_C3993UTI89_C4082
ECOL362663 ECP_4318ECP_0846ECP_0844ECP_1352ECP_3643ECP_3644ECP_3572ECP_3571ECP_3646
ECOL331111 ECE24377A_1676ECE24377A_0903ECE24377A_0901ECE24377A_1501ECE24377A_4034ECE24377A_4035ECE24377A_3959ECE24377A_3958ECE24377A_4037
ECOL316407 ECK1481:JW5240:B1487ECK0822:JW0816:B0832ECK0820:JW5111:B0830ECK1289:JW1287:B1294ECK3529:JW3511:B3542ECK3530:JW3512:B3543ECK3461:JW3442:B3477ECK3460:JW3441:B3476ECK3531:JW3513:B3544
ECOL199310 C5081C0917C0915C1771C4357C4358C4270C4269C4361
ECAR218491 ECA4076ECA2832ECA2834ECA1977ECA4392ECA4393ECA2801ECA4394
DRED349161 DRED_2454DRED_2452DRED_2454DRED_2454DRED_2452DRED_2453DRED_2453DRED_2454DRED_2454
DRAD243230 DR_1290DR_0958DR_1290DR_1290DR_0958DR_0959DR_0959DR_1712DR_1290
DHAF138119 DSY0502DSY0504DSY0502DSY0502DSY4357DSY0503DSY0503DSY2828DSY0502
DDES207559 DDE_3174DDE_1183DDE_3174DDE_1185DDE_1183DDE_1184DDE_1184DDE_1185DDE_1185
CSP501479 CSE45_3619CSE45_3762CSE45_3619CSE45_3619CSE45_2494CSE45_4965CSE45_5425CSE45_5426CSE45_3619
CHYD246194 CHY_1128CHY_1130CHY_1128CHY_1128CHY_1130CHY_1129CHY_1129CHY_1128CHY_1128
CDES477974 DAUD_1982DAUD_0387DAUD_1982DAUD_1982DAUD_0387DAUD_0386DAUD_0386DAUD_0391DAUD_1982
BVIE269482 BCEP1808_5114BCEP1808_4722BCEP1808_4720BCEP1808_3130BCEP1808_3128BCEP1808_3129BCEP1808_3129BCEP1808_3018BCEP1808_3130
BTHU281309 BT9727_4231BT9727_4232BT9727_4231BT9727_4232BT9727_4233BT9727_4233BT9727_4231BT9727_4231
BTHA271848 BTH_II1427BTH_II1115BTH_II1113BTH_I0220BTH_I0222BTH_I0221BTH_I0221BTH_II1113BTH_I0220
BSP376 BRADO4400BRADO2503BRADO1743BRADO1743BRADO1741BRADO1742BRADO2921BRADO1743BRADO1743
BSP36773 BCEP18194_B1258BCEP18194_B1865BCEP18194_B1867BCEP18194_B2067BCEP18194_A6390BCEP18194_A6391BCEP18194_A6391BCEP18194_A6266BCEP18194_B2067
BPUM315750 BPUM_0821BPUM_0823BPUM_0821BPUM_0821BPUM_0823BPUM_0822BPUM_3069BPUM_3070BPUM_0821
BPSE320373 BURPS668_A1410BURPS668_A1850BURPS668_A1853BURPS668_0243BURPS668_0245BURPS668_0244BURPS668_0244BURPS668_0402BURPS668_0243
BPSE320372 BURPS1710B_B3021BURPS1710B_B0387BURPS1710B_B0390BURPS1710B_A0461BURPS1710B_A0463BURPS1710B_A0462BURPS1710B_A0462BURPS1710B_A0622BURPS1710B_A0461
BPSE272560 BPSS0964BPSS1304BPSS1306BPSL0249BPSL0251BPSL0250BPSL0250BPSL0376BPSL0249
BPET94624 BPET3079BPET1796BPET1794BPET3079BPET2850BPET2851BPET0355BPET3079BPET1794
BPER257313 BP2594BP2394BP2396BP2396BP2394BP2395BP3299BP2293BP2396
BPAR257311 BPP1296BPP3259BPP3261BPP3261BPP1445BPP3260BPP4124BPP2435BPP3261
BOVI236 GBOORFA1047GBOORFA0827GBOORFA1047GBOORF1599GBOORF1595GBOORFA1046GBOORFA0828GBOORFA0829GBOORF1599
BMEL359391 BAB2_1055BAB2_0436BAB2_0974BAB1_1598BAB1_1599BAB2_0435BAB2_0974BAB1_1600
BMEL224914 BMEII0203BMEI0436BMEII0284BMEI0433BMEI0436BMEI0435BMEII0488BMEII0487BMEI0433
BMAL320389 BMA10247_A1065BMA10247_A1356BMA10247_A1359BMA10247_3378BMA10247_A1048BMA10247_3377BMA10247_3377BMA10247_2283BMA10247_3378
BMAL320388 BMASAVP1_0232BMASAVP1_0399BMASAVP1_0402BMASAVP1_A2969BMASAVP1_0249BMASAVP1_A2970BMASAVP1_A2970BMASAVP1_A3091BMASAVP1_A2969
BMAL243160 BMA_A1261BMA_A0977BMA_A0975BMA_3301BMA_A1276BMA_3302BMA_3302BMA_0091BMA_3301
BLIC279010 BL03046BL03048BL03046BL03046BL03048BL03047BL02419BL02418BL03046
BHAL272558 BH0031BH0030BH3026BH3644BH3642BH3643BH0568BH0567BH3644
BCLA66692 ABC0564ABC0032ABC0033ABC1240ABC1242ABC1241ABC1241ABC1240ABC1240
BCER288681 BCE33L4243BCE33L4244BCE33L4243BCE33L4244BCE33L4245BCE33L4245BCE33L0209BCE33L4243
BCEN331272 BCEN2424_4585BCEN2424_4165BCEN2424_4163BCEN2424_4016BCEN2424_3043BCEN2424_3044BCEN2424_3044BCEN2424_6565BCEN2424_3045
BCEN331271 BCEN_3783BCEN_4201BCEN_4203BCEN_4350BCEN_2429BCEN_2430BCEN_2430BCEN_1266BCEN_2431
BBRO257310 BB4726BB3710BB3712BB3712BB2519BB3711BB4594BB4726BB3712
BANT592021 BAA_4746BAA_4747BAA_4746BAA_4746BAA_4747BAA_4748BAA_4748BAA_0258BAA_4746
BANT568206 BAMEG_4765BAMEG_4766BAMEG_4765BAMEG_4766BAMEG_4767BAMEG_4767BAMEG_4765BAMEG_4765
BANT261594 GBAA4729GBAA4731GBAA4729GBAA4729GBAA4731GBAA4732GBAA4732GBAA0231GBAA4729
BANT260799 BAS4390BAS4391BAS4390BAS4391BAS4392BAS4392BAS4390BAS4390
BAMB398577 BAMMC406_4474BAMMC406_4054BAMMC406_4052BAMMC406_3923BAMMC406_2954BAMMC406_2955BAMMC406_2955BAMMC406_2835BAMMC406_3923
BAMB339670 BAMB_4012BAMB_3573BAMB_3571BAMB_3416BAMB_3088BAMB_3089BAMB_3089BAMB_2972BAMB_3416
APLE434271 APJL_0866APJL_0066APJL_0063APJL_0064APJL_0066APJL_0065APJL_0064APJL_0866
APLE416269 APL_0855APL_0066APL_0063APL_0064APL_0066APL_0065APL_0029APL_2010
AORE350688 CLOS_1347CLOS_1349CLOS_1347CLOS_1347CLOS_1349CLOS_1348CLOS_1348CLOS_1347
AMET293826 AMET_2909AMET_2907AMET_2909AMET_2909AMET_1878AMET_2908AMET_4721AMET_4722AMET_2909
ABAU360910 BAV2195BAV1161BAV1159BAV1159BAV1646BAV1645BAV3203BAV2195BAV1159
AAVE397945 AAVE_1658AAVE_1660AAVE_1658AAVE_1658AAVE_0937AAVE_1659AAVE_1659AAVE_1658AAVE_1658


Organism features enriched in list (features available for 124 out of the 134 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.002019535112
Disease:Anthrax 0.001969144
Disease:Dysentery 0.000084066
Disease:Gastroenteritis 0.0075000713
Disease:Glanders_and_pneumonia 0.009438833
Disease:Melioidosis 0.009438833
Disease:Plant_rot 0.009438833
Endospores:No 2.972e-624211
GC_Content_Range4:0-40 1.060e-1115213
GC_Content_Range4:40-60 0.001030962224
GC_Content_Range4:60-100 0.000107047145
GC_Content_Range7:0-30 0.0001088147
GC_Content_Range7:30-40 2.514e-714166
GC_Content_Range7:50-60 3.450e-641107
GC_Content_Range7:60-70 0.000059545134
Genome_Size_Range5:0-2 2.957e-153155
Genome_Size_Range5:2-4 5.374e-622197
Genome_Size_Range5:4-6 6.157e-1576184
Genome_Size_Range5:6-10 7.412e-62347
Genome_Size_Range9:1-2 9.378e-123128
Genome_Size_Range9:2-3 0.000019710120
Genome_Size_Range9:4-5 3.367e-74096
Genome_Size_Range9:5-6 2.740e-63688
Genome_Size_Range9:6-8 2.858e-72238
Gram_Stain:Gram_Neg 6.946e-794333
Gram_Stain:Gram_Pos 0.003451821150
Habitat:Aquatic 0.0000335691
Habitat:Multiple 0.001519651178
Motility:No 2.356e-810151
Motility:Yes 1.789e-884267
Oxygen_Req:Anaerobic 0.00017899102
Oxygen_Req:Facultative 0.000121760201
Pathogenic_in:Animal 0.00121982466
Shape:Coccus 1.645e-6382
Shape:Rod 1.250e-11105347
Temp._range:Mesophilic 0.0091980109473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 333
Effective number of orgs (counting one per cluster within 468 clusters): 261

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3061
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TSP1755 Thermoanaerobacter sp.1
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F11
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SDEG203122 ncbi Saccharophagus degradans 2-401
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PINT246198 Prevotella intermedia 170
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM21
PACN267747 ncbi Propionibacterium acnes KPA1712020
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-60
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HNEP81032 Hyphomonas neptunium0
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GFOR411154 ncbi Gramella forsetii KT08030
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI31
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIF272563 ncbi Clostridium difficile 6301
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G6781   G6432   G6430   G2002   EG12626   EG12625   EG12076   EG12075   EG10248   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486 XAC0856
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TSP1755 TETH514_0621
TPEN368408 TPEN_1638
TPAL243276
TKOD69014
TFUS269800 TFU_1822
TELO197221
TDEN326298
TDEN292415
TDEN243275
TACI273075
SWOL335541 SWOL_2012
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093 SUN_0891
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101 SPR1193
SPNE170187
SPNE1313
SMUT210007
SMAR399550 SMAR_0344
SHAE279808 SH0292
SGOR29390
SFUM335543 SFUM_1411
SEPI176280 SE_0205
SEPI176279 SERP2372
SDEG203122 SDE_2027
SAVE227882
SAUR93062 SACOL2476
SAUR93061 SAOUHSC_02767
SAUR426430 NWMN_2364
SAUR367830 SAUSA300_2411
SAUR282459 SAS2358
SAUR282458 SAR2554
SAUR273036 SAB2350C
SAUR196620 MW2391
SALA317655
SACI330779
RTYP257363
RSP357808
RSP101510 RHA1_RO02224
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL316055
RMAS416276
RFEL315456
RDEN375451
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199 GRAORF_4096
RAKA293614
PTOR263820
PSTU379731
PSP312153
PSP117
PRUM264731
PPEN278197
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616 PISL_0602
PINT246198
PGIN242619
PFUR186497
PDIS435591
PAST100379
PARC259536
PAER178306 PAE2391
PACN267747
OTSU357244
NWIN323098
NSP387092 NIS_1607
NSP35761 NOCA_4093
NSP103690
NSEN222891
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860 MSP_0812
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665 MAEO_0511
MABS561007
LXYL281090
LWEL386043 LWE0118
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669 LMOF2365_0154
LMON169963 LMO0136
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671
LINT189518
LINN272626 LIN0183
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
IHOS453591
HNEP81032
HMOD498761
HHAL349124
HBUT415426
GVIO251221
GFOR411154
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP106370 FRANCCI3_2767
FRANT
FPHI484022
FNOD381764
FMAG334413
FJOH376686
FALN326424 FRAAL4446
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DPSY177439
DOLE96561
DNOD246195
DETH243164
DARO159087
CVES412965
CTRA471473
CTRA471472
CSUL444179
CSP78
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380 CPR_2258
CPER195103 CPF_2555
CPER195102 CPE2273
CPEL335992
CNOV386415 NT01CX_1742
CMUR243161
CMIC443906 CMM_1478
CMIC31964 CMS1512
CMET456442
CMAQ397948
CJEJ407148 C8J_1481
CJEJ360109 JJD26997_1935
CJEJ354242 CJJ81176_1569
CJEJ195099 CJE_1755
CJEJ192222 CJ1584C
CJEI306537
CJAP155077
CHUT269798
CHOM360107
CGLU196627 CG2549
CFEL264202
CEFF196164
CDIF272563 CD0855
CCON360104 CCC13826_2116
CCHL340177 CAG_1157
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT508765 CLL_A2491
CBLO291272
CBLO203907
CAULO
CACE272562
CABO218497
BTUR314724
BTHE226186
BSP107806
BLON206672
BHER314723
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCER315749
BCER226900 BC_0908
BBUR224326
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP1667
APHA212042
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFER243159
AEHR187272
ADEH290397
ACRY349163
ACEL351607
ABUT367737
ABOR393595
AAUR290340 AAUR_1969
AAEO224324


Organism features enriched in list (features available for 309 out of the 333 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.002871547112
Disease:Gastroenteritis 0.0050394213
Disease:Pharyngitis 0.005964788
Disease:Wide_range_of_infections 0.00085161111
Disease:bronchitis_and_pneumonitis 0.005964788
Endospores:No 5.108e-6137211
Endospores:Yes 0.00167751853
GC_Content_Range4:0-40 9.000e-15157213
GC_Content_Range4:40-60 9.342e-694224
GC_Content_Range4:60-100 0.000054457145
GC_Content_Range7:0-30 0.00002793847
GC_Content_Range7:30-40 4.374e-9119166
GC_Content_Range7:50-60 0.000027438107
GC_Content_Range7:60-70 0.000014650134
Genome_Size_Range5:0-2 1.536e-21131155
Genome_Size_Range5:2-4 0.0016574120197
Genome_Size_Range5:4-6 3.102e-1948184
Genome_Size_Range5:6-10 3.033e-61047
Genome_Size_Range9:0-1 2.057e-82727
Genome_Size_Range9:1-2 6.201e-14104128
Genome_Size_Range9:2-3 0.001012578120
Genome_Size_Range9:4-5 1.519e-63096
Genome_Size_Range9:5-6 1.131e-111888
Genome_Size_Range9:6-8 9.757e-7638
Gram_Stain:Gram_Neg 0.0000535154333
Gram_Stain:Gram_Pos 0.002826193150
Habitat:Host-associated 0.0000260132206
Habitat:Multiple 0.002573580178
Motility:No 1.513e-8109151
Motility:Yes 7.092e-12101267
Oxygen_Req:Facultative 0.001091390201
Shape:Coccus 1.158e-66382
Shape:Rod 5.296e-13142347
Shape:Sphere 0.00066471719



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 19
Effective number of orgs (counting one per cluster within 468 clusters): 18

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
MACE188937 ncbi Methanosarcina acetivorans C2A 8.665e-66539
TLET416591 ncbi Thermotoga lettingae TMO 0.00005387999
HACI382638 ncbi Helicobacter acinonychis Sheeba 0.00006455078
HPYL357544 ncbi Helicobacter pylori HPAG1 0.00008025218
HPY ncbi Helicobacter pylori 26695 0.00008025218
MLAB410358 ncbi Methanocorpusculum labreanum Z 0.00021253637
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C 0.00028569619
DRAD243230 ncbi Deinococcus radiodurans R1 0.000658110549
TROS309801 ncbi Thermomicrobium roseum DSM 5159 0.001205011279
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 25586 0.00290328208
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-2901 0.003070812509
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 23779 0.004109612919
RXYL266117 ncbi Rubrobacter xylanophilus DSM 9941 0.004285212979
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G20 0.004436713029
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF8 0.00509793546
DRED349161 ncbi Desulfotomaculum reducens MI-1 0.007118113729
MBAR269797 ncbi Methanosarcina barkeri Fusaro 0.00897616267
LSPH444177 ncbi Lysinibacillus sphaericus C3-41 0.009525114179
TTHE300852 ncbi Thermus thermophilus HB8 0.00952639548


Names of the homologs of the genes in the group in each of these orgs
  G6781   G6432   G6430   G2002   EG12626   EG12625   EG12076   EG12075   EG10248   
MACE188937 MA4247MA0880MA4247MA4247MA0880MA4250MA4250MA3455MA3461
TLET416591 TLET_0071TLET_0200TLET_0202TLET_0202TLET_0855TLET_0854TLET_0854TLET_0071TLET_0071
HACI382638 HAC_0559HAC_0561HAC_0559HAC_0559HAC_0561HAC_0560HAC_0560HAC_0559
HPYL357544 HPAG1_0300HPAG1_0302HPAG1_0300HPAG1_0300HPAG1_0302HPAG1_0301HPAG1_0301HPAG1_0300
HPY HP0298HP0300HP0298HP0298HP0300HP0299HP0299HP0298
MLAB410358 MLAB_0723MLAB_0718MLAB_0722MLAB_0719MLAB_0719MLAB_0722MLAB_0723
CDES477974 DAUD_1982DAUD_0387DAUD_1982DAUD_1982DAUD_0387DAUD_0386DAUD_0386DAUD_0391DAUD_1982
DRAD243230 DR_1290DR_0958DR_1290DR_1290DR_0958DR_0959DR_0959DR_1712DR_1290
TROS309801 TRD_A0699TRD_A0701TRD_A0699TRD_A0699TRD_1280TRD_1861TRD_1279TRD_A0699TRD_A0699
FNUC190304 FN0998FN0398FN0396FN0396FN0398FN0397FN1504FN0396
CHYD246194 CHY_1128CHY_1130CHY_1128CHY_1128CHY_1130CHY_1129CHY_1129CHY_1128CHY_1128
HAUR316274 HAUR_1605HAUR_1607HAUR_1605HAUR_1605HAUR_1607HAUR_1606HAUR_0369HAUR_1605HAUR_1605
RXYL266117 RXYL_2424RXYL_2422RXYL_2424RXYL_2424RXYL_2422RXYL_2423RXYL_3026RXYL_2424RXYL_2424
DDES207559 DDE_3174DDE_1183DDE_3174DDE_1185DDE_1183DDE_1184DDE_1184DDE_1185DDE_1185
CKOR374847 KCR_0929KCR_0931KCR_0510KCR_0931KCR_0930KCR_0929
DRED349161 DRED_2454DRED_2452DRED_2454DRED_2454DRED_2452DRED_2453DRED_2453DRED_2454DRED_2454
MBAR269797 MBAR_A1979MBAR_A3674MBAR_A1979MBAR_A3678MBAR_A3674MBAR_A3675MBAR_A0473
LSPH444177 BSPH_0318BSPH_0320BSPH_4232BSPH_0318BSPH_0320BSPH_0319BSPH_2976BSPH_2977BSPH_0318
TTHE300852 TTHA1336TTHA1338TTHA1336TTHA1336TTHA1338TTHA1337TTHA1336TTHA1336


Organism features enriched in list (features available for 19 out of the 19 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Habitat:Specialized 0.0006465753
Optimal_temp.:35-40 0.002935323
Oxygen_Req:Anaerobic 0.00176549102



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTCAT-PWY (D-galactonate degradation)104750.5513
GALACTITOLCAT-PWY (galactitol degradation)73590.5259
GLUCARDEG-PWY (D-glucarate degradation I)152870.4940
PWY-6196 (serine racemization)102670.4757
GALACTARDEG-PWY (D-galactarate degradation I)151840.4697
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135770.4548
PWY0-823 (arginine degradation III (arginine decarboxylase/agmatinase pathway))2451050.4183
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149770.4117
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156790.4098
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195900.4049



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6432   G6430   G2002   EG12626   EG12625   EG12076   EG12075   EG10248   
G67810.9992430.9994610.999320.9989770.999190.9985730.9991410.999349
G64320.9996070.9991150.9996320.9995150.9992660.9988840.999324
G64300.9996060.999220.9994550.9988150.9990210.99968
G20020.9995260.999690.9991480.9986330.999829
EG126260.9998390.999470.9988070.999671
EG126250.9995440.9988430.999795
EG120760.99930.99922
EG120750.999309
EG10248



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PAIRWISE BLAST SCORES:

  G6781   G6432   G6430   G2002   EG12626   EG12625   EG12076   EG12075   EG10248   
G67810.0f0-4.3e-31------
G6432-0.0f0--3.3e-52----
G6430--0.0f0-----3.6e-52
G2002--7.8e-320.0f0----1.9e-88
EG12626-8.0e-49--0.0f0----
EG12625-----0.0f0---
EG12076-----1.4e-520.0f0--
EG120754.3e-34-1.7e-30----0.0f03.1e-33
EG10248--8.4e-512.2e-94----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-8-CPLX (dipeptide ABC transporter) (degree of match pw to cand: 0.600, degree of match cand to pw: 0.333, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9992 EG10248 (dppA) DPPA-MONOMER (DppA)
   *in cand* 0.9995 0.9988 EG12626 (dppC) DPPC-MONOMER (DppC)
   *in cand* 0.9995 0.9988 EG12625 (dppB) DPPB-MONOMER (DppB)
             0.9981 0.9928 EG12628 (dppF) DPPF-MONOMER (DppF)
             0.9978 0.9901 EG12627 (dppD) DPPD-MONOMER (DppD)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9991 0.9986 EG12075 (nikA) NIKA-MONOMER (NikA)
   *in cand* 0.9993 0.9986 EG12076 (nikB) NIKB-MONOMER (NikB)
   *in cand* 0.9994 0.9986 G2002 (sapA) SAPA-MONOMER (SapA)
   *in cand* 0.9994 0.9988 G6430 (gsiB) YLIB-MONOMER (GsiB)
   *in cand* 0.9994 0.9989 G6432 (gsiD) YLID-MONOMER (GsiD)
   *in cand* 0.9993 0.9986 G6781 (ddpA) YDDS-MONOMER (YddS)

- ABC-49-CPLX (gsiABCD glutathione ABC transporter) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.222, average score: 0.999)
  Genes in pathway or complex:
             0.9994 0.9984 G6431 (gsiC) YLIC-MONOMER (GsiC)
   *in cand* 0.9994 0.9989 G6432 (gsiD) YLID-MONOMER (GsiD)
   *in cand* 0.9994 0.9988 G6430 (gsiB) YLIB-MONOMER (GsiB)
             0.9787 0.9060 G6429 (gsiA) YLIA-MONOMER (GsiA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9992 EG10248 (dppA) DPPA-MONOMER (DppA)
   *in cand* 0.9991 0.9986 EG12075 (nikA) NIKA-MONOMER (NikA)
   *in cand* 0.9993 0.9986 EG12076 (nikB) NIKB-MONOMER (NikB)
   *in cand* 0.9995 0.9988 EG12625 (dppB) DPPB-MONOMER (DppB)
   *in cand* 0.9995 0.9988 EG12626 (dppC) DPPC-MONOMER (DppC)
   *in cand* 0.9994 0.9986 G2002 (sapA) SAPA-MONOMER (SapA)
   *in cand* 0.9993 0.9986 G6781 (ddpA) YDDS-MONOMER (YddS)

- ABC-20-CPLX (nickel ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.222, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9991 0.9986 EG12075 (nikA) NIKA-MONOMER (NikA)
             0.9990 0.9976 EG12077 (nikC) NIKC-MONOMER (NikC)
   *in cand* 0.9993 0.9986 EG12076 (nikB) NIKB-MONOMER (NikB)
             0.9973 0.9960 EG12079 (nikE) NIKE-MONOMER (NikE)
             0.9842 0.9292 EG12078 (nikD) NIKD-MONOMER (NikD)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9992 EG10248 (dppA) DPPA-MONOMER (DppA)
   *in cand* 0.9995 0.9988 EG12625 (dppB) DPPB-MONOMER (DppB)
   *in cand* 0.9995 0.9988 EG12626 (dppC) DPPC-MONOMER (DppC)
   *in cand* 0.9994 0.9986 G2002 (sapA) SAPA-MONOMER (SapA)
   *in cand* 0.9994 0.9988 G6430 (gsiB) YLIB-MONOMER (GsiB)
   *in cand* 0.9994 0.9989 G6432 (gsiD) YLID-MONOMER (GsiD)
   *in cand* 0.9993 0.9986 G6781 (ddpA) YDDS-MONOMER (YddS)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G6430 G6432 (centered at G6432)
EG12075 EG12076 (centered at EG12076)
G6781 (centered at G6781)
G2002 (centered at G2002)
EG10248 EG12625 EG12626 (centered at EG12625)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6781   G6432   G6430   G2002   EG12626   EG12625   EG12076   EG12075   EG10248   
197/623219/623197/623200/623221/623206/623199/623220/623204/623
AAUR290340:2:Tyes0--------
AAVE397945:0:Tyes7107127107100711711710710
ABAC204669:0:Tyes5980---21532153598-
ABAU360910:0:Tyes1038200487486205310380
ACAU438753:0:Tyes65902-011794-
AFUL224325:0:Tyes0----1---
AHYD196024:0:Tyes---20--17102
AMET293826:0:Tyes101910171019101901018283728381019
AORE350688:0:Tyes0200211-0
APER272557:0:Tyes0--0-1-00
APLE416269:0:Tyes8334239404241-02027
APLE434271:0:Tno77030132-1770
ASAL382245:5:Tyes---13840---1384
ASP232721:2:Tyes-201--0-202--
BABO262698:0:Tno5661485---0485-
BABO262698:1:Tno----01---
BAMB339670:2:Tno5951571550----0
BAMB339670:3:Tno----1161171170-
BAMB398577:2:Tno5411301280----0
BAMB398577:3:Tno----1191201200-
BAMY326423:0:Tyes0--021---
BANT260799:0:Tno010-12200
BANT261594:2:Tno414441454144414441454146414604144
BANT568206:2:Tyes010-12200
BANT592021:2:Tno436543664365436543664367436704365
BBAC360095:0:Tyes20--0----
BBRO257310:0:Tyes223011991201120101200209722301201
BCAN483179:0:Tno2010201---12-
BCAN483179:1:Tno----01---
BCEN331271:1:Tno0413415561-----
BCEN331271:2:Tno----11661167116701168
BCEN331272:1:Tyes-------0-
BCEN331272:2:Tyes5671491470-----
BCEN331272:3:Tyes----011-2
BCER226900:1:Tyes------0--
BCER288681:0:Tno407540764075-40764077407704075
BCER405917:1:Tyes720-720---7210-
BCER572264:1:Tno0-0---10-
BCLA66692:0:Tyes55701124612481247124712461246
BHAL272558:0:Tyes1030873708370637075895883708
BHEN283166:0:Tyes-0--0----
BJAP224911:0:Fyes666701892-189023662366620-
BLIC279010:0:Tyes020021185818570
BMAL243160:0:Tno27620-290----
BMAL243160:1:Tno---2892-2893289302892
BMAL320388:0:Tno0165168-17----
BMAL320388:1:Tno---0-111220
BMAL320389:0:Tyes18305308-0----
BMAL320389:1:Tyes---1076-1075107501076
BMEL224914:0:Tno0-85---291290-
BMEL224914:1:Tno-3-032--0
BMEL359391:0:Tno5661487---0487-
BMEL359391:1:Tno----01--2
BOVI236:0:Tyes1750175--17412-
BOVI236:1:Tyes---10---1
BPAR257311:0:Tno01849185118511411850269710851851
BPER257313:0:Tyes2971001021021001019280102
BPET94624:0:Tyes274614561454274625162517027461454
BPSE272560:0:Tyes0334336------
BPSE272560:1:Tyes---02111260
BPSE320372:0:Tno262403------
BPSE320372:1:Tno---02111600
BPSE320373:0:Tno0435438------
BPSE320373:1:Tno---02111560
BPUM315750:0:Tyes020021226822690
BQUI283165:0:Tyes30--01---
BSP36773:1:Tyes0607609809----809
BSP36773:2:Tyes----1241251250-
BSP376:0:Tyes25327092201111322
BSUB:0:Tyes----10---
BSUI204722:0:Tyes2820200---12-
BSUI204722:1:Tyes----01---
BSUI470137:0:Tno2840201---12-
BSUI470137:1:Tno----01---
BTHA271848:0:Tno31420----0-
BTHA271848:1:Tno---0211-0
BTHU281309:1:Tno010-12200
BTHU412694:1:Tno--612---6130-
BTRI382640:1:Tyes20--0----
BVIE269482:6:Tyes38820------
BVIE269482:7:Tyes---1121101111110112
BWEI315730:4:Tyes--0---1--
BXEN266265:0:Tyes20--01---
BXEN266265:1:Tyes--00---1848-
CBEI290402:0:Tyes---1-0--1
CBOT36826:1:Tno-1903----0119-
CBOT441770:0:Tyes-1888----0124-
CBOT441771:0:Tno-1747----0124-
CBOT441772:1:Tno-1853----0142-
CBOT498213:1:Tno-1932----0158-
CBOT508765:1:Tyes-0-------
CBOT515621:2:Tyes-2109----0200-
CBOT536232:0:Tno-2108----0143-
CCHL340177:0:Tyes-0-------
CCON360104:2:Tyes-------0-
CCUR360105:0:Tyes------10-
CDES477974:0:Tyes156911569156910051569
CDIF272563:1:Tyes-------0-
CDIP257309:0:Tyes------10-
CFET360106:0:Tyes0------0-
CGLU196627:0:Tyes--0------
CHYD246194:0:Tyes020021100
CJEJ192222:0:Tyes-------0-
CJEJ195099:0:Tno-------0-
CJEJ354242:2:Tyes-------0-
CJEJ360109:0:Tyes-------0-
CJEJ407148:0:Tno-------0-
CKLU431943:1:Tyes020021--0
CKOR374847:0:Tyes412414-0414413--412
CMIC31964:2:Tyes-------0-
CMIC443906:2:Tyes-------0-
CNOV386415:0:Tyes-0-------
CPER195102:1:Tyes---0-----
CPER195103:0:Tno---0-----
CPER289380:3:Tyes---0-----
CPSY167879:0:Tyes--0021--0
CSAL290398:0:Tyes0-00----0
CSP501479:2:Fyes------01-
CSP501479:4:Fyes-----0---
CSP501479:7:Fyes014200----0
CSP501479:8:Fyes----0----
CTEP194439:0:Tyes-0--0----
CTET212717:0:Tyes------10-
CVIO243365:0:Tyes-223880211-0
DDES207559:0:Tyes202802028201122
DGEO319795:1:Tyes--00-11-0
DHAF138119:0:Tyes020038961123570
DRAD243230:3:Tyes3270327327011736327
DRED349161:0:Tyes202201122
DSHI398580:3:Tyes-0-------
DSHI398580:5:Tyes------01735-
DSP216389:0:Tyes-0----1--
DSP255470:0:Tno-0----1--
DVUL882:1:Tyes02279--2279----
ECAR218491:0:Tyes2138855857024632464-8242465
ECOL199310:0:Tno40882083033743375328732863378
ECOL316407:0:Tno6712047429072906297329742905
ECOL331111:6:Tno7462057730163017294329423019
ECOL362663:0:Tno34612050727972798272627252800
ECOL364106:1:Tno38212073832363237315031493238
ECOL405955:2:Tyes34232055528682869279527942870
ECOL409438:6:Tyes6942046329742975290429032976
ECOL413997:0:Tno6432047226062607254125402608
ECOL439855:4:Tno8092095129192920281928182922
ECOL469008:0:Tno19622590259221242172730
ECOL481805:0:Tno20042645264721612165660
ECOL585034:0:Tno6212044927892790271827172792
ECOL585035:0:Tno35842057129993000292129203001
ECOL585055:0:Tno7462058730773078298029793080
ECOL585056:2:Tno7242058330303031294329423033
ECOL585057:0:Tno9552085032453246315631553247
ECOL585397:0:Tno39122069633273328326032593329
ECOL83334:0:Tno11992097735903591351235113592
ECOLI:0:Tno6812047927712772270427032773
ECOO157:0:Tno109120132136153616353335323617
EFER585054:1:Tyes-2067925562557125582558
ESP42895:1:Tyes93111641162200910167716761945
FALN326424:0:Tyes-------0-
FNUC190304:0:Tyes16231023102110211023-102201021
FSP106370:0:Tyes-------0-
FSP1855:0:Tyes--0----940-
GBET391165:0:Tyes0-00-----
GKAU235909:1:Tyes-0--0----
GMET269799:1:Tyes02--2-100
GOXY290633:5:Tyes0------0-
GSUL243231:0:Tyes02--2-10-
GTHE420246:1:Tyes020021100
GURA351605:0:Tyes851854--854-8520-
HACI382638:1:Tyes0200211-0
HARS204773:0:Tyes----0--2-
HAUR316274:2:Tyes125212541252125212541253012521252
HCHE349521:0:Tyes1-1117470-11
HDUC233412:0:Tyes-9208949291-00
HHEP235279:0:Tyes------01-
HINF281310:0:Tyes-2860326286287-00
HINF374930:0:Tyes-38335038--335335
HINF71421:0:Tno-3230768323324-00
HMAR272569:8:Tyes-0---165--164
HMUK485914:1:Tyes-324-1-0--1
HPY:0:Tno0200211-0
HPYL357544:1:Tyes0200211-0
HPYL85963:0:Tno0-00-11-0
HSAL478009:4:Tyes---0-1--0
HSOM205914:1:Tyes---0----0
HSOM228400:0:Tno---0----0
HSP64091:2:Tno---0-1--0
HWAL362976:1:Tyes---1-0--1
ILOI283942:0:Tyes--00----0
JSP290400:1:Tyes12751272--3390339133910-
JSP375286:0:Tyes------11600-
KPNE272620:2:Tyes457648674865028822883282728262884
KRAD266940:2:Fyes8048060169380616941694-1693
LINN272626:1:Tno------0--
LINT363253:3:Tyes-81--81--0-
LMON169963:0:Tno------0--
LMON265669:0:Tyes------0--
LSPH444177:1:Tyes023795021260626070
LWEL386043:0:Tyes------0--
MACE188937:0:Tyes327103271327103274327425022509
MAEO419665:0:Tyes------0--
MBAR269797:1:Tyes14883134148831383134-31350-
MFLA265072:0:Tyes0---2364364902-
MGIL350054:3:Tyes20--011--
MHUN323259:0:Tyes6116---066
MLAB410358:0:Tyes50-4-1145
MLOT266835:2:Tyes4330336203280328232813281-3280
MMAZ192952:0:Tyes0759--75976010-
MSME246196:0:Tyes3246324800-157293277-
MSP164756:1:Tno01559--155915581558--
MSP164757:0:Tno01581--158115801580--
MSP189918:2:Tyes01571--157115701570--
MSP266779:3:Tyes0148123883028292952930
MSP400668:0:Tyes1947022014407-2
MSP409:2:Tyes332911020021121633290
MSTA339860:0:Tyes-------0-
MSUC221988:0:Tyes-9291636411929930011636
MVAN350058:0:Tyes02--211--
NOCE323261:1:Tyes-----00--
NPHA348780:2:Tyes----1-0--
NSP35761:1:Tyes------0--
NSP387092:0:Tyes-------0-
OANT439375:4:Tyes0------01440
OANT439375:5:Tyes-20976978977977--
OCAR504832:0:Tyes-30913081-030903080--
OIHE221109:0:Tyes023231706170617041705-17061706
PABY272844:0:Tyes-2--2-10-
PAER178306:0:Tyes0--------
PAER208963:0:Tyes-80487--6
PAER208964:0:Tno-80487-16
PARS340102:0:Tyes0-------0
PATL342610:0:Tyes--002---0
PCAR338963:0:Tyes3---0--3-
PCRY335284:1:Tyes---201--2
PENT384676:0:Tyes-055011-5
PFLU205922:0:Tyes4786045011-5
PFLU216595:1:Tyes7921404792601-13476
PFLU220664:0:Tyes310805088501310955
PHAL326442:1:Tyes---021--0
PHOR70601:0:Tyes0--0---00
PING357804:0:Tyes1736--15190---1519
PISL384616:0:Tyes0--------
PLUM243265:0:Fyes-20233821--0
PLUT319225:0:Tyes-0--0----
PMEN399739:0:Tyes502201--6
PMOB403833:0:Tyes0----1---
PMUL272843:1:Tyes-2067521-00
PNAP365044:8:Tyes2980--300299---
PPRO298386:2:Tyes--002---0
PPUT160488:0:Tno-05501246424635
PPUT351746:0:Tyes96596855011-5
PPUT76869:0:Tno-025011-5
PSP296591:2:Tyes422502266526622661266122665
PSP56811:2:Tyes--0021--0
PSYR205918:0:Tyes195441219811978198319820-1979
PSYR223283:2:Tyes192865719551951195719560-1953
PTHE370438:0:Tyes0-00---00
RALB246199:0:Tyes-------0-
RCAS383372:0:Tyes-0--0115-
RETL347834:0:Tyes0-0------
RETL347834:4:Tyes-0-------
RETL347834:5:Tyes---1271291280-127
REUT264198:3:Tyes202-1102--22
REUT381666:1:Tyes-----0---
REUT381666:2:Tyes-0211750-82922
RFER338969:1:Tyes21192121211996596896902119965
RLEG216596:2:Tyes0-0------
RLEG216596:6:Tyes-3795-0211-0
RMET266264:1:Tyes-----0---
RMET266264:2:Tyes10822001737-100
RPAL258594:0:Tyes256232230--00--
RPAL316056:0:Tyes2298----00--
RPAL316057:0:Tyes-----00--
RPAL316058:0:Tyes384802--100910091436-
RPOM246200:1:Tyes239614122396239614121411023962396
RRUB269796:1:Tyes0441439439441440359360439
RSOL267608:1:Tyes-2001513116430
RSP101510:3:Fyes-------0-
RSPH272943:3:Tyes--00211-0
RSPH272943:4:Tyes20-------
RSPH349101:1:Tno--00211-0
RSPH349101:2:Tno20-------
RSPH349102:4:Tyes--00211-0
RSPH349102:5:Tyes02-------
RXYL266117:0:Tyes20220159822
SACI56780:0:Tyes11301--1-01130-
SAGA205921:0:Tno------01-
SAGA208435:0:Tno------01-
SAGA211110:0:Tyes------01-
SARE391037:0:Tyes138113831381-138311382-0
SAUR158878:1:Tno-0-----2332-
SAUR158879:1:Tno-0-----2212-
SAUR196620:0:Tno-------0-
SAUR273036:0:Tno-------0-
SAUR282458:0:Tno-------0-
SAUR282459:0:Tno-------0-
SAUR359786:1:Tno-0-----2350-
SAUR359787:1:Tno-0-----2307-
SAUR367830:3:Tno-------0-
SAUR418127:0:Tyes-0-----2321-
SAUR426430:0:Tno-------0-
SAUR93061:0:Fno-------0-
SAUR93062:1:Tno-------0-
SBAL399599:3:Tyes---20---2
SBAL402882:1:Tno---20---2
SBOY300268:1:Tyes798209862674267526082607986
SCO:2:Fyes----1111-11100-
SDEG203122:0:Tyes0--------
SDEN318161:0:Tyes---0----0
SDYS300267:1:Tyes20283635543555270427033556
SELO269084:0:Tyes0--0-----
SENT209261:0:Tno219242542702194219342621922192
SENT220341:0:Tno29782042929802979129782978
SENT295319:0:Tno-67868002207220867922092209
SENT321314:2:Tno27552084827532754275427552755
SENT454169:2:Tno28672087728652866128672867
SEPI176279:1:Tyes-------0-
SEPI176280:0:Tno-------0-
SERY405948:0:Tyes--1002--1424554050
SFLE198214:0:Tyes9952050026742675260025992676
SFLE373384:0:Tno959-04728702589252825272588
SFUM335543:0:Tyes-------0-
SGLO343509:3:Tyes--0148921--0
SHAE279808:0:Tyes-------0-
SHAL458817:0:Tyes---02---0
SHIGELLA:0:Tno5422050729612960302930302959
SLAC55218:1:Fyes-11221119301111193
SLOI323850:0:Tyes---021--0
SMAR399550:0:Tyes----0----
SMED366394:1:Tyes-0-----419-
SMED366394:2:Tyes0-0------
SMED366394:3:Tyes---0212497-0
SMEL266834:0:Tyes-0-----850-
SMEL266834:1:Tyes0-0------
SMEL266834:2:Tyes---0211-0
SONE211586:1:Tyes---20---2
SPEA398579:0:Tno---021--0
SPNE171101:0:Tno------0--
SPRO399741:1:Tyes226014591457254210226114573358
SSED425104:0:Tyes---201--2
SSON300269:1:Tyes7832097428842883275427532882
SSP292414:2:Tyes269227222692269201-26922692
SSP387093:0:Tyes--0------
SSP644076:3:Fyes------0--
SSP644076:4:Fyes-------0-
SSP644076:6:Fyes050200502503--0
SSP94122:1:Tyes---02---0
STHE292459:0:Tyes9059039059059039040905905
STRO369723:0:Tyes145214541452-145411453-0
STYP99287:1:Tyes27612083127592760127612761
SWOL335541:0:Tyes-------0-
TCRU317025:0:Tyes-----00--
TERY203124:0:Tyes0-0------
TFUS269800:0:Tyes-0-------
TLET416591:0:Tyes012913113179879779700
TMAR243274:0:Tyes1-11-0--1
TPEN368408:1:Tyes0--------
TPET390874:0:Tno0-0--1--0
TPSE340099:0:Tyes-1450-0---0-
TROS309801:0:Tyes0200---00
TROS309801:1:Tyes----15750--
TSP1755:0:Tyes-0-------
TSP28240:0:Tyes0-00-1--0
TTEN273068:0:Tyes1243012431243-12421242-1243
TTHE262724:1:Tyes-2002130400
TTHE300852:2:Tyes02002-100
UMET351160:0:Tyes20--011--
VCHO:0:Tyes-957154115410---1541
VCHO:1:Fyes-------0-
VCHO345073:0:Tno-------0-
VCHO345073:1:Tno-06686681885---668
VEIS391735:1:Tyes33463816381433465483345023814
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