CANDIDATE ID: 182

CANDIDATE ID: 182

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9939242e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    8.8888889e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6363 (ybeZ) (b0660)
   Products of gene:
     - G6363-MONOMER (predicted protein with nucleoside triphosphate hydrolase domain)

- G6362 (ybeY) (b0659)
   Products of gene:
     - G6362-MONOMER (conserved protein involved in translation)

- G6361 (ybeX) (b0658)
   Products of gene:
     - G6361-MONOMER (predicted ion transport protein)

- G6350 (nadD) (b0639)
   Products of gene:
     - NICONUCADENYLYLTRAN-MONOMER (nicotinate-mononucleotide adenylyltransferase)
       Reactions:
        ATP + nicotinate mononucleotide  ->  diphosphate + nicotinate adenine dinucleotide
         In pathways
         PWY-3502 (PWY-3502)
         PWY0-781 (aspartate superpathway)
         NADSYN-PWY (NADSYN-PWY)
         PYRIDNUCSAL-PWY (NAD salvage pathway I)
         PYRIDNUCSYN-PWY (NAD biosynthesis I (from aspartate))
         PWY-5381 (PWY-5381)
         PWY-5653 (PWY-5653)

- EG11734 (phoH) (b1020)
   Products of gene:
     - EG11734-MONOMER (ATP-binding protein)

- EG11412 (holA) (b0640)
   Products of gene:
     - EG11412-MONOMER (DNA polymerase III, δ subunit)
     - CPLX0-3801 (DNA polymerase III, preinitiation complex)
     - CPLX0-3803 (DNA polymerase III, holoenzyme)

- EG11255 (ybeB) (b0637)
   Products of gene:
     - EG11255-MONOMER (predicted protein)

- EG10532 (leuS) (b0642)
   Products of gene:
     - LEUS-MONOMER (leucyl-tRNA synthetase)
       Reactions:
        tRNAleu + L-leucine + ATP  ->  L-leucyl-tRNAleu + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)

- EG10168 (lnt) (b0657)
   Products of gene:
     - EG10168-MONOMER (apolipoprotein N-acyltransferase)



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 176
Effective number of orgs (counting one per cluster within 468 clusters): 107

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317589
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329539
YPES386656 ncbi Yersinia pestis Pestoides F9
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua9
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO929
YPES187410 ncbi Yersinia pestis KIM 109
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80819
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A8
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110188
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103318
XFAS405440 ncbi Xylella fastidiosa M128
XFAS183190 ncbi Xylella fastidiosa Temecula18
XFAS160492 ncbi Xylella fastidiosa 9a5c8
XCAM487884 Xanthomonas campestris pv. paulliniae8
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-108
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80048
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339138
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3068
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VFIS312309 ncbi Vibrio fischeri ES1148
VEIS391735 ncbi Verminephrobacter eiseniae EF01-28
VCHO345073 ncbi Vibrio cholerae O3958
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169618
TTUR377629 ncbi Teredinibacter turnerae T79018
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252598
TCRU317025 ncbi Thiomicrospira crunogena XCL-29
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT29
SSP94122 ncbi Shewanella sp. ANA-39
SSON300269 ncbi Shigella sonnei Ss0469
SSED425104 ncbi Shewanella sediminis HAW-EB39
SPRO399741 ncbi Serratia proteamaculans 5689
SPEA398579 ncbi Shewanella pealeana ATCC 7003458
SONE211586 ncbi Shewanella oneidensis MR-19
SLOI323850 ncbi Shewanella loihica PV-48
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SHAL458817 ncbi Shewanella halifaxensis HAW-EB49
SGLO343509 ncbi Sodalis glossinidius morsitans9
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4769
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B679
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91509
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT189
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty29
SDYS300267 ncbi Shigella dysenteriae Sd1979
SDEN318161 ncbi Shewanella denitrificans OS2178
SDEG203122 ncbi Saccharophagus degradans 2-409
SBOY300268 ncbi Shigella boydii Sb2279
SBAL402882 ncbi Shewanella baltica OS1859
SBAL399599 ncbi Shewanella baltica OS1959
RSOL267608 ncbi Ralstonia solanacearum GMI10009
RMET266264 ncbi Ralstonia metallidurans CH348
RFER338969 ncbi Rhodoferax ferrireducens T1188
REUT381666 ncbi Ralstonia eutropha H169
REUT264198 ncbi Ralstonia eutropha JMP1348
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30009
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a9
PSTU379731 ncbi Pseudomonas stutzeri A15019
PSP56811 Psychrobacter sp.8
PSP296591 ncbi Polaromonas sp. JS6668
PPUT76869 ncbi Pseudomonas putida GB-19
PPUT351746 ncbi Pseudomonas putida F19
PPUT160488 ncbi Pseudomonas putida KT24409
PPRO298386 ncbi Photobacterium profundum SS98
PMUL272843 ncbi Pasteurella multocida multocida Pm708
PMEN399739 ncbi Pseudomonas mendocina ymp9
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO19
PING357804 ncbi Psychromonas ingrahamii 379
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1259
PFLU220664 ncbi Pseudomonas fluorescens Pf-59
PFLU216595 ncbi Pseudomonas fluorescens SBW259
PFLU205922 ncbi Pseudomonas fluorescens Pf0-19
PENT384676 ncbi Pseudomonas entomophila L489
PCAR338963 ncbi Pelobacter carbinolicus DSM 23808
PATL342610 ncbi Pseudoalteromonas atlantica T6c9
PARC259536 ncbi Psychrobacter arcticus 273-48
PAER208964 ncbi Pseudomonas aeruginosa PAO19
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA149
NOCE323261 ncbi Nitrosococcus oceani ATCC 197079
NMUL323848 ncbi Nitrosospira multiformis ATCC 251968
NMEN374833 ncbi Neisseria meningitidis 0534429
NMEN272831 ncbi Neisseria meningitidis FAM189
NMEN122587 ncbi Neisseria meningitidis Z24919
NMEN122586 ncbi Neisseria meningitidis MC589
NGON242231 ncbi Neisseria gonorrhoeae FA 10908
NEUT335283 ncbi Nitrosomonas eutropha C918
NEUR228410 ncbi Nitrosomonas europaea ATCC 197188
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E8
MSP400668 ncbi Marinomonas sp. MWYL19
MPET420662 ncbi Methylibium petroleiphilum PM18
MFLA265072 ncbi Methylobacillus flagellatus KT9
MCAP243233 ncbi Methylococcus capsulatus Bath9
MAQU351348 ncbi Marinobacter aquaeolei VT89
LPNE400673 ncbi Legionella pneumophila Corby8
LPNE297246 ncbi Legionella pneumophila Paris8
LPNE297245 ncbi Legionella pneumophila Lens9
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 19
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785789
JSP375286 ncbi Janthinobacterium sp. Marseille9
ILOI283942 ncbi Idiomarina loihiensis L2TR9
HSOM228400 ncbi Haemophilus somnus 23368
HSOM205914 ncbi Haemophilus somnus 129PT8
HHAL349124 ncbi Halorhodospira halophila SL19
HCHE349521 ncbi Hahella chejuensis KCTC 23969
HARS204773 ncbi Herminiimonas arsenicoxydans9
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-008
FTUL418136 ncbi Francisella tularensis tularensis WY96-34188
FTUL401614 ncbi Francisella novicida U1128
FTUL393115 ncbi Francisella tularensis tularensis FSC1988
FTUL393011 ncbi Francisella tularensis holarctica OSU188
FTUL351581 Francisella tularensis holarctica FSC2008
FRANT ncbi Francisella tularensis tularensis SCHU S48
ESP42895 Enterobacter sp.9
EFER585054 ncbi Escherichia fergusonii ATCC 354699
ECOO157 ncbi Escherichia coli O157:H7 EDL9339
ECOL83334 Escherichia coli O157:H79
ECOL585397 ncbi Escherichia coli ED1a9
ECOL585057 ncbi Escherichia coli IAI399
ECOL585056 ncbi Escherichia coli UMN0269
ECOL585055 ncbi Escherichia coli 559899
ECOL585035 ncbi Escherichia coli S889
ECOL585034 ncbi Escherichia coli IAI19
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL469008 ncbi Escherichia coli BL21(DE3)9
ECOL439855 ncbi Escherichia coli SMS-3-59
ECOL413997 ncbi Escherichia coli B str. REL6069
ECOL409438 ncbi Escherichia coli SE119
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI899
ECOL362663 ncbi Escherichia coli 5369
ECOL331111 ncbi Escherichia coli E24377A9
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
ECOL199310 ncbi Escherichia coli CFT0739
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10439
DNOD246195 ncbi Dichelobacter nodosus VCS1703A8
DARO159087 ncbi Dechloromonas aromatica RCB9
CVIO243365 ncbi Chromobacterium violaceum ATCC 124728
CSAL290398 ncbi Chromohalobacter salexigens DSM 30439
CPSY167879 ncbi Colwellia psychrerythraea 34H9
CJAP155077 Cellvibrio japonicus9
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1119
CBUR360115 ncbi Coxiella burnetii RSA 3319
CBUR227377 ncbi Coxiella burnetii RSA 4939
BVIE269482 ncbi Burkholderia vietnamiensis G49
BTHA271848 ncbi Burkholderia thailandensis E2649
BSP36773 Burkholderia sp.8
BPSE320373 ncbi Burkholderia pseudomallei 6688
BPSE320372 ncbi Burkholderia pseudomallei 1710b9
BPSE272560 ncbi Burkholderia pseudomallei K962439
BPET94624 Bordetella petrii9
BPER257313 ncbi Bordetella pertussis Tohama I8
BPAR257311 ncbi Bordetella parapertussis 128229
BMAL320389 ncbi Burkholderia mallei NCTC 102479
BMAL320388 ncbi Burkholderia mallei SAVP19
BMAL243160 ncbi Burkholderia mallei ATCC 233449
BCEN331272 ncbi Burkholderia cenocepacia HI24248
BCEN331271 ncbi Burkholderia cenocepacia AU 10548
BBRO257310 ncbi Bordetella bronchiseptica RB509
BAMB398577 ncbi Burkholderia ambifaria MC40-69
BAMB339670 ncbi Burkholderia ambifaria AMMD9
ASP76114 ncbi Aromatoleum aromaticum EbN19
ASP62977 ncbi Acinetobacter sp. ADP18
ASP62928 ncbi Azoarcus sp. BH729
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4499
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL038
APLE416269 ncbi Actinobacillus pleuropneumoniae L208
AHYD196024 Aeromonas hydrophila dhakensis9
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232709
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-19
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C8
ABOR393595 ncbi Alcanivorax borkumensis SK29
ABAU360910 ncbi Bordetella avium 197N9


Names of the homologs of the genes in the group in each of these orgs
  G6363   G6362   G6361   G6350   EG11734   EG11412   EG11255   EG10532   EG10168   
YPSE349747 YPSIP31758_2916YPSIP31758_2917YPSIP31758_2918YPSIP31758_2929YPSIP31758_2125YPSIP31758_2928YPSIP31758_2947YPSIP31758_2926YPSIP31758_2919
YPSE273123 YPTB1112YPTB1111YPTB1110YPTB1100YPTB1955YPTB1101YPTB1099YPTB1103YPTB1109
YPES386656 YPDSF_2633YPDSF_2634YPDSF_2636YPDSF_2646YPDSF_1165YPDSF_2645YPDSF_2647YPDSF_2643YPDSF_2637
YPES377628 YPN_1105YPN_1104YPN_1102YPN_1092YPN_1093YPN_1091YPN_1095YPN_1101
YPES360102 YPA_2478YPA_2479YPA_2480YPA_2490YPA_1340YPA_2489YPA_2491YPA_2487YPA_2481
YPES349746 YPANGOLA_A1830YPANGOLA_A1832YPANGOLA_A1833YPANGOLA_A1845YPANGOLA_A1844YPANGOLA_A1846YPANGOLA_A1842YPANGOLA_A1834
YPES214092 YPO2619YPO2618YPO2617YPO2607YPO1957YPO2608YPO2606YPO2610YPO2616
YPES187410 Y1194Y1193Y1191Y1181Y2353Y1182Y1180Y1184Y1190
YENT393305 YE2986YE2987YE2988YE2999YE2478YE2998YE3000YE2996YE2989
XORY360094 XOOORF_1939XOOORF_1937XOOORF_1935XOOORF_3683XOOORF_1939XOOORF_3684XOOORF_3682XOOORF_3686
XORY342109 XOO2607XOO2609XOO2611XOO3139XOO2607XOO3140XOO3138XOO3142
XORY291331 XOO2767XOO2769XOO2771XOO3326XOO2767XOO3327XOO3325XOO3329
XFAS405440 XFASM12_1948XFASM12_1949XFASM12_1951XFASM12_1379XFASM12_1948XFASM12_1378XFASM12_1380XFASM12_1376
XFAS183190 PD_1780PD_1781PD_1783PD_1233PD_1780PD_1232PD_1234PD_1230
XFAS160492 XF0904XF0903XF0901XF2179XF0904XF2178XF2180XF2176
XCAM487884 XCC-B100_1843XCC-B100_1841XCC-B100_1839XCC-B100_1544XCC-B100_1843XCC-B100_1543XCC-B100_1545XCC-B100_1541
XCAM316273 XCAORF_2603XCAORF_2605XCAORF_2607XCAORF_2962XCAORF_2603XCAORF_2963XCAORF_2961XCAORF_2966
XCAM314565 XC_1787XC_1785XC_1783XC_1500XC_1787XC_1499XC_1501XC_1497
XCAM190485 XCC2329XCC2331XCC2333XCC2616XCC2329XCC2617XCC2615XCC2620
XAXO190486 XAC2462XAC2464XAC2466XAC2778XAC2462XAC2779XAC2777XAC2781
VVUL216895 VV1_0267VV1_0268VV1_0269VV1_0267VV1_0275VV1_0276VV1_0272VV1_0270
VVUL196600 VV0916VV0915VV0914VV0916VV0909VV0908VV0911VV0913
VPAR223926 VP0732VP0731VP0730VP0732VP0725VP0724VP0727VP0729
VFIS312309 VF0758VF0757VF0756VF0758VF0751VF0750VF0753VF0755
VEIS391735 VEIS_4067VEIS_4066VEIS_2157VEIS_4067VEIS_0964VEIS_2625VEIS_1071VEIS_2158
VCHO345073 VC0395_A0483VC0395_A0482VC0395_A0481VC0395_A0483VC0395_A0476VC0395_A0475VC0395_A0478VC0395_A0480
VCHO VC0961VC0960VC0959VC0961VC0953VC0952VC0956VC0958
TTUR377629 TERTU_3875TERTU_3876TERTU_3877TERTU_3875TERTU_3887TERTU_0601TERTU_3885TERTU_3878
TDEN292415 TBD_2705TBD_2704TBD_2703TBD_2441TBD_2443TBD_2440TBD_2445TBD_2584
TCRU317025 TCR_0474TCR_0475TCR_0476TCR_0484TCR_0474TCR_0481TCR_0485TCR_0479TCR_0477
STYP99287 STM0669STM0668STM0667STM0645STM1126STM0646STM0642STM0648STM0666
SSP94122 SHEWANA3_1007SHEWANA3_1006SHEWANA3_1005SHEWANA3_0998SHEWANA3_1007SHEWANA3_0999SHEWANA3_0997SHEWANA3_1001SHEWANA3_1004
SSON300269 SSO_0614SSO_0613SSO_0612SSO_0593SSO_1039SSO_0594SSO_0591SSO_0596SSO_0611
SSED425104 SSED_3472SSED_3473SSED_3474SSED_3482SSED_3472SSED_3481SSED_3483SSED_3479SSED_3475
SPRO399741 SPRO_1218SPRO_1217SPRO_1216SPRO_1204SPRO_2925SPRO_1205SPRO_1203SPRO_1207SPRO_1215
SPEA398579 SPEA_3138SPEA_3139SPEA_3140SPEA_3146SPEA_3145SPEA_3147SPEA_3143SPEA_3141
SONE211586 SO_1180SO_1179SO_1178SO_1171SO_1180SO_1172SO_1170SO_1174SO_1177
SLOI323850 SHEW_2924SHEW_2925SHEW_2926SHEW_2932SHEW_2931SHEW_2933SHEW_2929SHEW_2927
SHIGELLA YBEZYBEYYBEXYBENYBEZHOLAYBEBLEUSLNT
SHAL458817 SHAL_3223SHAL_3224SHAL_3225SHAL_3231SHAL_3223SHAL_3230SHAL_3232SHAL_3228SHAL_3226
SGLO343509 SG0810SG0809SG0808SG0800SG0810SG0801SG0799SG0803SG0807
SFLE373384 SFV_0667SFV_0668SFV_0669SFV_0687SFV_0667SFV_0686SFV_0689SFV_0684SFV_0670
SFLE198214 AAN42259.1AAN42260.1AAN42261.1AAN42278.1AAN42648.1AAN42277.1AAN42280.1AAN42275.1AAN42262.1
SENT454169 SEHA_C0787SEHA_C0786SEHA_C0785SEHA_C0761SEHA_C1236SEHA_C0762SEHA_C0758SEHA_C0764SEHA_C0784
SENT321314 SCH_0697SCH_0696SCH_0695SCH_0675SCH_1077SCH_0676SCH_0672SCH_0678SCH_0694
SENT295319 SPA2071SPA2072SPA2073SPA2089SPA1725SPA2088SPA2092SPA2086SPA2074
SENT220341 STY0715STY0714STY0712STY0696STY1162STY0697STY0693STY0699STY0711
SENT209261 T2204T2205T2206T2222T1795T2221T2225T2219T2207
SDYS300267 SDY_0596SDY_0595SDY_0594SDY_0561SDY_0596SDY_0562SDY_0559SDY_0564SDY_0593
SDEN318161 SDEN_0814SDEN_0813SDEN_0812SDEN_0794SDEN_0795SDEN_0857SDEN_0797SDEN_0811
SDEG203122 SDE_3301SDE_3302SDE_3303SDE_3344SDE_3301SDE_3310SDE_3343SDE_3308SDE_3304
SBOY300268 SBO_0524SBO_0523SBO_0522SBO_0503SBO_2038SBO_0504SBO_0501SBO_0506SBO_0521
SBAL402882 SHEW185_3304SHEW185_3305SHEW185_3306SHEW185_3314SHEW185_3304SHEW185_3313SHEW185_3315SHEW185_3311SHEW185_3307
SBAL399599 SBAL195_3440SBAL195_3441SBAL195_3442SBAL195_3450SBAL195_3440SBAL195_3449SBAL195_3451SBAL195_3447SBAL195_3443
RSOL267608 RSC0530RSC0529RSC0528RSC2193RSC0530RSC2742RSC2194RSC2744RSC0527
RMET266264 RMET_0452RMET_0451RMET_0450RMET_0782RMET_2971RMET_0781RMET_2973RMET_0449
RFER338969 RFER_0738RFER_0737RFER_3698RFER_2078RFER_0760RFER_2079RFER_0758RFER_3697
REUT381666 H16_A0527H16_A0526H16_A0525H16_A0913H16_A0527H16_A3137H16_A0912H16_A3139H16_A0524
REUT264198 REUT_A0513REUT_A0512REUT_A0511REUT_A2525REUT_A2832REUT_A2526REUT_A2834REUT_A0510
PSYR223283 PSPTO_4805PSPTO_4806PSPTO_4807PSPTO_4828PSPTO_4805PSPTO_4814PSPTO_4827PSPTO_4812PSPTO_4808
PSYR205918 PSYR_4346PSYR_4347PSYR_4348PSYR_4368PSYR_4346PSYR_4354PSYR_4367PSYR_4352PSYR_4349
PSTU379731 PST_3762PST_3763PST_3764PST_3784PST_3762PST_3770PST_3783PST_3768PST_3765
PSP56811 PSYCPRWF_1970PSYCPRWF_1971PSYCPRWF_2247PSYCPRWF_0344PSYCPRWF_1970PSYCPRWF_0343PSYCPRWF_1830PSYCPRWF_2337
PSP296591 BPRO_4095BPRO_4096BPRO_4209BPRO_1971BPRO_4600BPRO_1972BPRO_4605BPRO_4208
PPUT76869 PPUTGB1_4841PPUTGB1_4842PPUTGB1_4843PPUTGB1_4863PPUTGB1_4841PPUTGB1_4849PPUTGB1_4862PPUTGB1_4847PPUTGB1_4844
PPUT351746 PPUT_4663PPUT_4664PPUT_4665PPUT_4685PPUT_4663PPUT_4671PPUT_4684PPUT_4669PPUT_4666
PPUT160488 PP_4787PP_4788PP_4789PP_4810PP_4787PP_4796PP_4809PP_4794PP_4790
PPRO298386 PBPRA2879PBPRA2880PBPRA2881PBPRA2879PBPRA2887PBPRA2888PBPRA2885PBPRA2882
PMUL272843 PM1046PM1045PM1033PM1046PM1216PM1922PM1214PM1032
PMEN399739 PMEN_3780PMEN_3781PMEN_3782PMEN_3801PMEN_3780PMEN_3788PMEN_3800PMEN_3786PMEN_3783
PLUM243265 PLU1311PLU1310PLU1309PLU1300PLU2039PLU1301PLU1299PLU1303PLU1308
PING357804 PING_0534PING_0533PING_0532PING_1188PING_0534PING_1189PING_1137PING_1191PING_0531
PHAL326442 PSHAA1045PSHAA1044PSHAA1043PSHAA1028PSHAA1045PSHAA1029PSHAA1027PSHAA1031PSHAA1042
PFLU220664 PFL_5433PFL_5434PFL_5435PFL_5455PFL_5433PFL_5441PFL_5454PFL_5439PFL_5436
PFLU216595 PFLU5405PFLU5406PFLU5407PFLU5426PFLU5405PFLU5412PFLU5425PFLU5410PFLU5408
PFLU205922 PFL_4951PFL_4952PFL_4953PFL_4973PFL_4951PFL_4959PFL_4972PFL_4957PFL_4954
PENT384676 PSEEN4807PSEEN4808PSEEN4809PSEEN4829PSEEN4807PSEEN4815PSEEN4828PSEEN4813PSEEN4810
PCAR338963 PCAR_1231PCAR_1233PCAR_2212PCAR_2578PCAR_1231PCAR_2577PCAR_1413PCAR_1236
PATL342610 PATL_2207PATL_2208PATL_2209PATL_1563PATL_2207PATL_1564PATL_1562PATL_1566PATL_2210
PARC259536 PSYC_0627PSYC_0626PSYC_1977PSYC_0195PSYC_0627PSYC_0194PSYC_0576PSYC_1976
PAER208964 PA3981PA3982PA3983PA4006PA3981PA3989PA4005PA3987PA3984
PAER208963 PA14_12330PA14_12310PA14_12300PA14_12020PA14_12330PA14_12200PA14_12030PA14_12230PA14_12280
NOCE323261 NOC_0238NOC_0239NOC_0240NOC_2661NOC_0238NOC_2663NOC_2660NOC_2665NOC_0241
NMUL323848 NMUL_A2696NMUL_A2697NMUL_A2698NMUL_A0360NMUL_A0513NMUL_A0361NMUL_A0511NMUL_A0552
NMEN374833 NMCC_0804NMCC_0479NMCC_0477NMCC_0175NMCC_0804NMCC_0667NMCC_0176NMCC_0323NMCC_0672
NMEN272831 NMC0784NMC0477NMC0476NMC2003NMC0784NMC0658NMC2002NMC0326NMC0664
NMEN122587 NMA1056NMA0717NMA0716NMA0416NMA1056NMA0913NMA0417NMA0559NMA0918
NMEN122586 NMB_0845NMB_0538NMB_0537NMB_2024NMB_0845NMB_0708NMB_2023NMB_1897NMB_0713
NGON242231 NGO0417NGO0145NGO0144NGO2080NGO0283NGO2081NGO0006NGO0289
NEUT335283 NEUT_1788NEUT_1787NEUT_1786NEUT_1610NEUT_1427NEUT_1611NEUT_1429NEUT_1870
NEUR228410 NE2334NE2333NE2332NE0359NE1137NE0358NE1139NE1188
MSUC221988 MS1682MS1680MS0651MS1682MS0332MS1834MS0338MS0652
MSP400668 MMWYL1_2910MMWYL1_2911MMWYL1_2912MMWYL1_2851MMWYL1_2910MMWYL1_2917MMWYL1_2850MMWYL1_2915MMWYL1_2913
MPET420662 MPE_A3239MPE_A3240MPE_A3385MPE_A1340MPE_A3239MPE_A0216MPE_A1341MPE_A3384
MFLA265072 MFLA_0650MFLA_0649MFLA_0648MFLA_2159MFLA_0650MFLA_2157MFLA_0593MFLA_2155MFLA_0646
MCAP243233 MCA_1458MCA_1457MCA_1456MCA_1879MCA_1458MCA_1451MCA_2027MCA_1453MCA_1455
MAQU351348 MAQU_2739MAQU_2740MAQU_2741MAQU_2416MAQU_2739MAQU_2746MAQU_2415MAQU_2744MAQU_2742
LPNE400673 LPC_0857LPC_0856LPC_0855LPC_0761LPC_0857LPC_0793LPC_0764LPC_0765
LPNE297246 LPP1396LPP1395LPP1394LPP1299LPP1396LPP1332LPP1302LPP1303
LPNE297245 LPL1600LPL1601LPL1602LPL1298LPL1600LPL1299LPL1328LPL1301LPL1302
LPNE272624 LPG1441LPG1440LPG1439LPG1345LPG1441LPG1346LPG1377LPG1348LPG1349
KPNE272620 GKPORF_B5109GKPORF_B5108GKPORF_B5107GKPORF_B5095GKPORF_B5488.3GKPORF_B5096GKPORF_B5093GKPORF_B5098GKPORF_B5106
JSP375286 MMA_0430MMA_0429MMA_0428MMA_0541MMA_0430MMA_2898MMA_0540MMA_2896MMA_0427
ILOI283942 IL0942IL0943IL0944IL0950IL0942IL0949IL0951IL0947IL0945
HSOM228400 HSM_0614HSM_0615HSM_0111HSM_0614HSM_0469HSM_0195HSM_0467HSM_0112
HSOM205914 HS_0345HS_0346HS_0237HS_0345HS_1555HS_0323HS_1557HS_0238
HHAL349124 HHAL_0892HHAL_0891HHAL_0890HHAL_2141HHAL_0892HHAL_2143HHAL_2140HHAL_2145HHAL_0889
HCHE349521 HCH_05349HCH_05350HCH_05351HCH_05846HCH_05349HCH_05357HCH_05845HCH_05355HCH_05352
HARS204773 HEAR0380HEAR0379HEAR0378HEAR0555HEAR0380HEAR2663HEAR0554HEAR2661HEAR0377
FTUL458234 FTA_0936FTA_0935FTA_0934FTA_0936FTA_2005FTA_1160FTA_1281FTA_0933
FTUL418136 FTW_1111FTW_1112FTW_1113FTW_1111FTW_1894FTW_1407FTW_0897FTW_1114
FTUL401614 FTN_1064FTN_1065FTN_1066FTN_1064FTN_0173FTN_0774FTN_0870FTN_1067
FTUL393115 FTF0617CFTF0616CFTF0615CFTF0617CFTF0197CFTF1100FTF0990FTF0614C
FTUL393011 FTH_0871FTH_0870FTH_0869FTH_0871FTH_1820FTH_1074FTH_1186FTH_0868
FTUL351581 FTL_0885FTL_0884FTL_0883FTL_0885FTL_1898FTL_1100FTL_1212FTL_0882
FRANT PHOHFT.0617CFT.0616CPHOHHOLAFT.1101LEUSFT.0615C
ESP42895 ENT638_1186ENT638_1185ENT638_1184ENT638_1173ENT638_1548ENT638_1174ENT638_1172ENT638_1176ENT638_1183
EFER585054 EFER_2442EFER_2443EFER_2444EFER_2467EFER_1908EFER_2466EFER_2468EFER_2464EFER_2445
ECOO157 YBEZYBEYYBEXYBENPHOHHOLAYBEBLEUSLNT
ECOL83334 ECS0698ECS0697ECS0696ECS0677ECS1266ECS0678ECS0675ECS0680ECS0695
ECOL585397 ECED1_0651ECED1_0650ECED1_0649ECED1_0636ECED1_1175ECED1_0637ECED1_0634ECED1_0639ECED1_0648
ECOL585057 ECIAI39_0627ECIAI39_0626ECIAI39_0625ECIAI39_0614ECIAI39_2136ECIAI39_0615ECIAI39_0612ECIAI39_0617ECIAI39_0624
ECOL585056 ECUMN_0753ECUMN_0752ECUMN_0751ECUMN_0733ECUMN_1205ECUMN_0734ECUMN_0731ECUMN_0736ECUMN_0750
ECOL585055 EC55989_0655EC55989_0654EC55989_0653EC55989_0631EC55989_1131EC55989_0632EC55989_0629EC55989_0634EC55989_0652
ECOL585035 ECS88_0695ECS88_0694ECS88_0693ECS88_0681ECS88_1036ECS88_0682ECS88_0679ECS88_0684ECS88_0692
ECOL585034 ECIAI1_0644ECIAI1_0643ECIAI1_0642ECIAI1_0623ECIAI1_1065ECIAI1_0624ECIAI1_0621ECIAI1_0626ECIAI1_0641
ECOL481805 ECOLC_2985ECOLC_2986ECOLC_2987ECOLC_3006ECOLC_2576ECOLC_3005ECOLC_3008ECOLC_3003ECOLC_2988
ECOL469008 ECBD_2991ECBD_2992ECBD_2993ECBD_3012ECBD_2574ECBD_3011ECBD_3014ECBD_3009ECBD_2994
ECOL439855 ECSMS35_0682ECSMS35_0681ECSMS35_0680ECSMS35_0659ECSMS35_2103ECSMS35_0660ECSMS35_0657ECSMS35_0662ECSMS35_0678
ECOL413997 ECB_00628ECB_00627ECB_00626ECB_00608ECB_01022ECB_00609ECB_00606ECB_00611ECB_00625
ECOL409438 ECSE_0731ECSE_0730ECSE_0729ECSE_0708ECSE_1085ECSE_0709ECSE_0705ECSE_0711ECSE_0728
ECOL405955 APECO1_1403APECO1_1404APECO1_1405APECO1_1416APECO1_111APECO1_1415APECO1_14132APECO1_1406
ECOL364106 UTI89_C0658UTI89_C0657UTI89_C0656UTI89_C0642UTI89_C1083UTI89_C0643UTI89_C0639UTI89_C0645UTI89_C0655
ECOL362663 ECP_0683ECP_0682ECP_0681ECP_0669ECP_1019ECP_0670ECP_0667ECP_0672ECP_0680
ECOL331111 ECE24377A_0689ECE24377A_0688ECE24377A_0687ECE24377A_0665ECE24377A_0689ECE24377A_0666ECE24377A_0663ECE24377A_0668ECE24377A_0686
ECOL316407 ECK0652:JW0657:B0660ECK0651:JW0656:B0659ECK0650:JW0655:B0658ECK0632:JW0634:B0639ECK1010:JW1005:B1020ECK0633:JW0635:B0640ECK0630:JW5090:B0637ECK0635:JW0637:B0642ECK0649:JW0654:B0657
ECOL199310 C0745C0744C0743C0730C1159C0731C0728C0733C0742
ECAR218491 ECA1318ECA1317ECA1316ECA1306ECA1741ECA1307ECA1305ECA1309ECA1315
DNOD246195 DNO_1244DNO_1243DNO_0936DNO_1244DNO_0244DNO_0467DNO_0246DNO_0247
DARO159087 DARO_3528DARO_3529DARO_3530DARO_0169DARO_3528DARO_0542DARO_0170DARO_0544DARO_3531
CVIO243365 CV_4151CV_4152CV_4153CV_0519CV_0507CV_0518CV_0505CV_4154
CSAL290398 CSAL_2335CSAL_2336CSAL_2337CSAL_1542CSAL_2335CSAL_2346CSAL_1543CSAL_2344CSAL_2338
CPSY167879 CPS_3573CPS_3574CPS_3575CPS_1718CPS_3573CPS_1720CPS_1717CPS_1722CPS_3576
CJAP155077 CJA_1638CJA_1637CJA_1636CJA_0786CJA_1389CJA_0452CJA_0787CJA_0454CJA_1635
CBUR434922 COXBU7E912_1495COXBU7E912_1496COXBU7E912_1498COXBU7E912_1509COXBU7E912_1495COXBU7E912_1508COXBU7E912_1511COXBU7E912_1506COXBU7E912_1499
CBUR360115 COXBURSA331_A0682COXBURSA331_A0681COXBURSA331_A0679COXBURSA331_A0670COXBURSA331_A0682COXBURSA331_A0671COXBURSA331_A0666COXBURSA331_A0673COXBURSA331_A0678
CBUR227377 CBU_0568CBU_0567CBU_0565CBU_0556CBU_0568CBU_0557CBU_0552CBU_0559CBU_0564
BVIE269482 BCEP1808_2796BCEP1808_2797BCEP1808_2799BCEP1808_2382BCEP1808_2796BCEP1808_0624BCEP1808_2383BCEP1808_0622BCEP1808_2800
BTHA271848 BTH_I0590BTH_I0589BTH_I0587BTH_I1012BTH_I0590BTH_I1213BTH_I1011BTH_I1211BTH_I0586
BSP36773 BCEP18194_A6022BCEP18194_A6023BCEP18194_A6025BCEP18194_A5624BCEP18194_A3742BCEP18194_A5625BCEP18194_A3740BCEP18194_A6026
BPSE320373 BURPS668_0709BURPS668_0706BURPS668_1228BURPS668_0709BURPS668_3413BURPS668_1227BURPS668_3415BURPS668_0703
BPSE320372 BURPS1710B_A0934BURPS1710B_A0932BURPS1710B_A0930BURPS1710B_A1456BURPS1710B_A0934BURPS1710B_A3726BURPS1710B_A1455BURPS1710B_A3728BURPS1710B_A0929
BPSE272560 BPSL0673BPSL0672BPSL0670BPSL1162BPSL0673BPSL2936BPSL1161BPSL2938BPSL0669
BPET94624 BPET3655BPET3656BPET3657BPET3102BPET3655BPET3326BPET3103BPET3324BPET3658
BPER257313 BP1040BP1039BP1038BP2311BP1040BP2042BP2312BP2044
BPAR257311 BPP1140BPP1139BPP1138BPP2419BPP1140BPP1729BPP2418BPP1731BPP1137
BMAL320389 BMA10247_2437BMA10247_2435BMA10247_2433BMA10247_0355BMA10247_2437BMA10247_2638BMA10247_0354BMA10247_2640BMA10247_2432
BMAL320388 BMASAVP1_A2721BMASAVP1_A2723BMASAVP1_A2725BMASAVP1_A1072BMASAVP1_A2721BMASAVP1_A0368BMASAVP1_A1071BMASAVP1_A0370BMASAVP1_A2726
BMAL243160 BMA_0225BMA_0223BMA_0221BMA_1887BMA_0225BMA_2451BMA_1888BMA_2453BMA_0220
BCEN331272 BCEN2424_2694BCEN2424_2695BCEN2424_2698BCEN2424_2297BCEN2424_0656BCEN2424_2298BCEN2424_0654BCEN2424_2699
BCEN331271 BCEN_2082BCEN_2083BCEN_2086BCEN_1685BCEN_0173BCEN_1686BCEN_0171BCEN_2087
BBRO257310 BB1356BB1355BB1354BB1868BB1356BB3379BB1867BB3377BB1353
BAMB398577 BAMMC406_2611BAMMC406_2612BAMMC406_2615BAMMC406_2214BAMMC406_2611BAMMC406_0577BAMMC406_2215BAMMC406_0575BAMMC406_2616
BAMB339670 BAMB_2747BAMB_2748BAMB_2750BAMB_2335BAMB_2747BAMB_0551BAMB_2336BAMB_0549BAMB_2751
ASP76114 EBA1337EBA1336EBA1335EBA3972EBA1337EBA4383EBA3971EBA4386EBA1334
ASP62977 ACIAD3159ACIAD3160ACIAD0416ACIAD3159ACIAD3108ACIAD3076ACIAD3106ACIAD0415
ASP62928 AZO0779AZO0780AZO0781AZO3607AZO0779AZO3217AZO3608AZO3215AZO0782
ASAL382245 ASA_1073ASA_1072ASA_1071ASA_1065ASA_1073ASA_1066ASA_1064ASA_1068ASA_1070
APLE434271 APJL_0339APJL_0692APJL_0390APJL_0339APJL_0886APJL_1634APJL_0884APJL_0389
APLE416269 APL_0324APL_0694APL_0372APL_0324APL_0874APL_1601APL_0872APL_0371
AHYD196024 AHA_3242AHA_3243AHA_3244AHA_3251AHA_3242AHA_3250AHA_3252AHA_3247AHA_3245
AFER243159 AFE_2443AFE_2442AFE_2441AFE_0161AFE_2443AFE_2580AFE_0160AFE_2578AFE_2440
AEHR187272 MLG_0395MLG_0396MLG_0397MLG_0404MLG_0395MLG_0402MLG_0405MLG_0400MLG_0398
ADEH290397 ADEH_2721ADEH_2719ADEH_3839ADEH_2409ADEH_2721ADEH_0213ADEH_2727ADEH_2717
ABOR393595 ABO_1935ABO_1936ABO_1937ABO_1952ABO_1935ABO_1949ABO_1953ABO_1947ABO_1940
ABAU360910 BAV0836BAV0837BAV0838BAV2210BAV0836BAV2494BAV2211BAV2492BAV0839


Organism features enriched in list (features available for 167 out of the 176 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00008061292
Arrangment:Pairs 0.004023243112
Arrangment:Singles 0.001617397286
Disease:Bubonic_plague 0.000517766
Disease:Dysentery 0.000517766
Disease:Gastroenteritis 0.00033361013
Disease:Legionnaire's_disease 0.006560844
Disease:Meningitis_and_septicemia 0.006560844
Disease:Tularemia 0.001847055
Endospores:No 3.501e-1029211
Endospores:Yes 1.489e-7153
GC_Content_Range4:0-40 7.009e-2214213
GC_Content_Range4:40-60 2.877e-13103224
GC_Content_Range7:30-40 2.130e-1314166
GC_Content_Range7:40-50 0.009013143117
GC_Content_Range7:50-60 2.240e-1160107
GC_Content_Range7:60-70 0.006295149134
Genome_Size_Range5:0-2 6.579e-187155
Genome_Size_Range5:2-4 0.000814341197
Genome_Size_Range5:4-6 5.394e-1796184
Genome_Size_Range5:6-10 0.00111162347
Genome_Size_Range9:1-2 3.132e-137128
Genome_Size_Range9:4-5 2.012e-64796
Genome_Size_Range9:5-6 4.511e-94988
Genome_Size_Range9:6-8 0.00006872238
Gram_Stain:Gram_Neg 1.161e-33156333
Habitat:Specialized 0.0033577753
Motility:No 9.909e-1016151
Motility:Yes 3.894e-10110267
Optimal_temp.:- 0.008181985257
Optimal_temp.:35-37 0.00033361013
Oxygen_Req:Anaerobic 5.700e-115102
Oxygen_Req:Facultative 3.541e-886201
Pathogenic_in:Animal 0.00014693266
Pathogenic_in:No 1.031e-640226
Pathogenic_in:Plant 0.00031831115
Shape:Coccobacillus 0.0025020811
Shape:Coccus 1.744e-6782
Shape:Rod 1.320e-14139347
Shape:Spiral 0.0007325234
Temp._range:Mesophilic 0.0010458148473
Temp._range:Psychrophilic 0.002710579
Temp._range:Thermophilic 0.0000737135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 74
Effective number of orgs (counting one per cluster within 468 clusters): 68

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 131
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
PTOR263820 ncbi Picrophilus torridus DSM 97900
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL357544 ncbi Helicobacter pylori HPAG11
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G6363   G6362   G6361   G6350   EG11734   EG11412   EG11255   EG10532   EG10168   
UURE95667 UU469
UPAR505682
UMET351160
TVOL273116
TPEN368408
TKOD69014
TACI273075
STOK273063
SSOL273057
SMAR399550
SACI330779
PTOR263820
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
OTSU357244 OTBS_0333
NPHA348780 NP1414A
MTHE349307
MTHE187420
MSTA339860
MSED399549
MPUL272635 MYPU_3350
MPNE272634
MMYC272632
MMOB267748 MMOB2760
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_1977
MMAR267377
MLAB410358 MLAB_1278
MKAN190192
MJAN243232
MHYO295358 MHP474
MHYO262722
MHYO262719
MHUN323259 MHUN_3011
MGEN243273
MFLO265311 MFL373
MCAP340047
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
IHOS453591
HWAL362976 HQ3705A
HSP64091 VNG6302C
HSAL478009 OE5193F
HPYL357544 HPAG1_1496
HMUK485914 HMUK_0760
HMAR272569 RRNAC2600
HBUT415426
CTET212717 CTC_02055
CSUL444179
CMET456442 MBOO_1891
CMAQ397948
CKOR374847
CHOM360107 CHAB381_0473
CBOT515621 CLJ_B3241
CBOT441771 CLC_2881
CBOT441770 CLB_3009
CBOT36826 CBO2984
CABO218497 CAB819
BXEN266265
AYEL322098
AURANTIMONAS
APER272557
AFUL224325


Organism features enriched in list (features available for 70 out of the 74 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.001713059
Arrangment:Singles 0.000087849286
Endospores:No 2.475e-1151211
GC_Content_Range4:0-40 0.002598336213
GC_Content_Range4:60-100 0.00182298145
GC_Content_Range7:0-30 4.514e-61747
GC_Content_Range7:60-70 0.00498988134
Genome_Size_Range5:0-2 1.125e-941155
Genome_Size_Range5:4-6 2.127e-75184
Genome_Size_Range9:0-1 0.00001261227
Genome_Size_Range9:1-2 0.000047129128
Genome_Size_Range9:4-5 0.0032676496
Genome_Size_Range9:5-6 0.0000684188
Gram_Stain:Gram_Neg 1.978e-720333
Gram_Stain:Gram_Pos 6.919e-73150
Habitat:Aquatic 0.00056122191
Habitat:Multiple 0.00005148178
Habitat:Specialized 1.259e-61953
Optimal_temp.:- 5.106e-614257
Optimal_temp.:100 0.001666133
Optimal_temp.:35-40 0.001666133
Optimal_temp.:85 0.000192544
Oxygen_Req:Aerobic 0.000704711185
Oxygen_Req:Anaerobic 1.727e-1236102
Pathogenic_in:Human 0.000032511213
Pathogenic_in:No 0.000423340226
Salinity:Extreme_halophilic 0.000362857
Salinity:Moderate_halophilic 0.0075030512
Shape:Irregular_coccus 4.107e-131517
Shape:Pleomorphic 0.008291048
Shape:Rod 8.439e-1018347
Shape:Sphere 2.601e-101419
Temp._range:Hyperthermophilic 1.906e-121723
Temp._range:Mesophilic 1.003e-739473
Temp._range:Thermophilic 0.00372151035



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 19
Effective number of orgs (counting one per cluster within 468 clusters): 9

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CBUR360115 ncbi Coxiella burnetii RSA 331 0.00039829979
CBUR227377 ncbi Coxiella burnetii RSA 493 0.000451710119
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-111 0.000652510539
NMEN374833 ncbi Neisseria meningitidis 053442 0.002411812179
NMEN122586 ncbi Neisseria meningitidis MC58 0.002615912289
NMEN272831 ncbi Neisseria meningitidis FAM18 0.002753712359
NMEN122587 ncbi Neisseria meningitidis Z2491 0.003048712499
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 23270 0.004345312999
TCRU317025 ncbi Thiomicrospira crunogena XCL-2 0.004375613009
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 1 0.005713713399
LPNE297245 ncbi Legionella pneumophila Lens 0.006276213539
NOCE323261 ncbi Nitrosococcus oceani ATCC 19707 0.007118113729
HHAL349124 ncbi Halorhodospira halophila SL1 0.007501613809
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-00 0.00760739278
FTUL393011 ncbi Francisella tularensis holarctica OSU18 0.00767189288
DNOD246195 ncbi Dichelobacter nodosus VCS1703A 0.00914229498
FRANT ncbi Francisella tularensis tularensis SCHU S4 0.00952639548
FTUL393115 ncbi Francisella tularensis tularensis FSC198 0.00984369588
FTUL351581 Francisella tularensis holarctica FSC200 0.00984369588


Names of the homologs of the genes in the group in each of these orgs
  G6363   G6362   G6361   G6350   EG11734   EG11412   EG11255   EG10532   EG10168   
CBUR360115 COXBURSA331_A0682COXBURSA331_A0681COXBURSA331_A0679COXBURSA331_A0670COXBURSA331_A0682COXBURSA331_A0671COXBURSA331_A0666COXBURSA331_A0673COXBURSA331_A0678
CBUR227377 CBU_0568CBU_0567CBU_0565CBU_0556CBU_0568CBU_0557CBU_0552CBU_0559CBU_0564
CBUR434922 COXBU7E912_1495COXBU7E912_1496COXBU7E912_1498COXBU7E912_1509COXBU7E912_1495COXBU7E912_1508COXBU7E912_1511COXBU7E912_1506COXBU7E912_1499
NMEN374833 NMCC_0804NMCC_0479NMCC_0477NMCC_0175NMCC_0804NMCC_0667NMCC_0176NMCC_0323NMCC_0672
NMEN122586 NMB_0845NMB_0538NMB_0537NMB_2024NMB_0845NMB_0708NMB_2023NMB_1897NMB_0713
NMEN272831 NMC0784NMC0477NMC0476NMC2003NMC0784NMC0658NMC2002NMC0326NMC0664
NMEN122587 NMA1056NMA0717NMA0716NMA0416NMA1056NMA0913NMA0417NMA0559NMA0918
AFER243159 AFE_2443AFE_2442AFE_2441AFE_0161AFE_2443AFE_2580AFE_0160AFE_2578AFE_2440
TCRU317025 TCR_0474TCR_0475TCR_0476TCR_0484TCR_0474TCR_0481TCR_0485TCR_0479TCR_0477
LPNE272624 LPG1441LPG1440LPG1439LPG1345LPG1441LPG1346LPG1377LPG1348LPG1349
LPNE297245 LPL1600LPL1601LPL1602LPL1298LPL1600LPL1299LPL1328LPL1301LPL1302
NOCE323261 NOC_0238NOC_0239NOC_0240NOC_2661NOC_0238NOC_2663NOC_2660NOC_2665NOC_0241
HHAL349124 HHAL_0892HHAL_0891HHAL_0890HHAL_2141HHAL_0892HHAL_2143HHAL_2140HHAL_2145HHAL_0889
FTUL458234 FTA_0936FTA_0935FTA_0934FTA_0936FTA_2005FTA_1160FTA_1281FTA_0933
FTUL393011 FTH_0871FTH_0870FTH_0869FTH_0871FTH_1820FTH_1074FTH_1186FTH_0868
DNOD246195 DNO_1244DNO_1243DNO_0936DNO_1244DNO_0244DNO_0467DNO_0246DNO_0247
FRANT PHOHFT.0617CFT.0616CPHOHHOLAFT.1101LEUSFT.0615C
FTUL393115 FTF0617CFTF0616CFTF0615CFTF0617CFTF0197CFTF1100FTF0990FTF0614C
FTUL351581 FTL_0885FTL_0884FTL_0883FTL_0885FTL_1898FTL_1100FTL_1212FTL_0882


Organism features enriched in list (features available for 18 out of the 19 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Legionnaire's_disease 0.005116924
Disease:Meningitis_and_septicemia 6.423e-744
Disease:Q_fever 0.000901822
Disease:Tularemia 3.134e-645
Endospores:No 0.00282301211
Genome_Size_Range5:2-4 0.000691813197
Genome_Size_Range9:2-3 0.000788610120
Gram_Stain:Gram_Neg 0.000487017333
Optimal_temp.:35-37 0.0054543313
Pathogenic_in:Animal 3.487e-61066
Pathogenic_in:No 0.00829152226
Shape:Coccobacillus 0.0033186311



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181530.6833
GLYCOCAT-PWY (glycogen degradation I)2461600.6601
AST-PWY (arginine degradation II (AST pathway))1201060.6518
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001710.6154
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911650.5916
PWY-5918 (heme biosynthesis I)2721590.5906
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961660.5881
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901640.5866
PWY-4041 (γ-glutamyl cycle)2791600.5820
PWY-1269 (CMP-KDO biosynthesis I)3251730.5794
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761210.5645
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391740.5600
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861590.5595
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911260.5571
PWY-5386 (methylglyoxal degradation I)3051630.5480
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951260.5452
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481730.5363
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81730.5313
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251340.5228
PWY-5913 (TCA cycle variation IV)3011580.5206
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831160.5033
LIPASYN-PWY (phospholipases)2121260.4975
TYRFUMCAT-PWY (tyrosine degradation I)1841140.4847
GLUCONSUPER-PWY (D-gluconate degradation)2291300.4829
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911160.4797
GALACTITOLCAT-PWY (galactitol degradation)73630.4698
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149980.4673
PWY-5148 (acyl-CoA hydrolysis)2271270.4658
KDOSYN-PWY (KDO transfer to lipid IVA I)1801100.4653
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491340.4633
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491340.4633
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791090.4604
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981740.4569
PWY0-1182 (trehalose degradation II (trehalase))70600.4541
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96730.4531
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291560.4503
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551340.4493
PWY0-981 (taurine degradation IV)106770.4465
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112790.4397
PWY-3162 (tryptophan degradation V (side chain pathway))94700.4327
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116800.4326
P601-PWY (D-camphor degradation)95700.4281
PWY-5783 (octaprenyl diphosphate biosynthesis)165980.4152
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161720.4124
THREONINE-DEG2-PWY (threonine degradation II)2141150.4095
GLUCARDEG-PWY (D-glucarate degradation I)152920.4073
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94670.4029
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221720.4026



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6362   G6361   G6350   EG11734   EG11412   EG11255   EG10532   EG10168   
G63630.9999930.99990.9993160.999990.9991280.9992010.9992580.999792
G63620.9999310.9992880.9999640.999180.9992280.9993040.999836
G63610.9988520.9997390.9991990.9988850.9992740.999895
G63500.9989110.9994910.999960.9994570.998657
EG117340.9987560.9989520.9989310.999699
EG114120.9993740.9998110.999282
EG112550.9994790.998817
EG105320.999397
EG10168



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PAIRWISE BLAST SCORES:

  G6363   G6362   G6361   G6350   EG11734   EG11412   EG11255   EG10532   EG10168   
G63630.0f0--------
G6362-0.0f0-------
G6361--0.0f0------
G6350---0.0f0-----
EG117346.2e-42---0.0f0----
EG11412-----0.0f0---
EG11255------0.0f0--
EG10532-------0.0f0-
EG10168--------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10532 EG11255 EG11412 G6350 (centered at EG11412)
EG10168 G6361 G6362 G6363 (centered at G6362)
EG11734 (centered at EG11734)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6363   G6362   G6361   G6350   EG11734   EG11412   EG11255   EG10532   EG10168   
411/623417/623371/623400/623366/623193/623406/623405/623367/623
AAEO224324:0:Tyes937938-0937-879-559
AAUR290340:2:Tyes210129---17-
AAVE397945:0:Tyes10191020964-101913210-963
ABAC204669:0:Tyes3544-354103544-113182339
ABAU360910:0:Tyes012137601665137716633
ABOR393595:0:Tyes0121701418125
ABUT367737:0:Tyes-477-----0-
ACAU438753:0:Tyes-1--0-41765613
ACEL351607:0:Tyes2728290----447
ACRY349163:8:Tyes1336-1338-1336--20390
ADEH290397:0:Tyes25332531366222142533-025392529
AEHR187272:0:Tyes0129071053
AFER243159:0:Tyes224822472246122482381023792245
AHYD196024:0:Tyes0129081053
ALAI441768:0:Tyes-400------
AMAR234826:0:Tyes-198----0--
AMAR329726:9:Tyes-392--3036--0745
AMET293826:0:Tyes1654165209431654-947948-
ANAE240017:0:Tyes63-650--2-257
AORE350688:0:Tyes56556701063565----
APHA212042:0:Tyes-1014----0--
APLE416269:0:Tyes036848-0550130854847
APLE434271:0:Tno033351-0522130752050
ASAL382245:5:Tyes987192046
ASP1667:3:Tyes2-0156--15417-
ASP232721:2:Tyes308230830-308233071330-1
ASP62928:0:Tyes012287702482287824803
ASP62977:0:Tyes255525561-25552502247725000
ASP76114:2:Tyes321154231784154117860
AVAR240292:3:Tyes2038465-02038--2625-
BABO262698:1:Tno327328--327-310330
BAFZ390236:2:Fyes--0766----186
BAMB339670:3:Tno225222532255183522522183602256
BAMB398577:3:Tno206420652068166420642166502069
BAMY326423:0:Tyes575508757-85418-
BANT260799:0:Tno20-282-26433-
BANT261594:2:Tno20-302-28434-
BANT568206:2:Tyes20-302-28454-
BANT592021:2:Tno20-302-28452-
BAPH198804:0:Tyes-014-3-2-
BAPH372461:0:Tyes-0-----1-
BBAC264462:0:Tyes-198-2391----0
BBAC360095:0:Tyes855856857-855-0-858
BBRO257310:0:Tyes3215273204052620380
BBUR224326:21:Fno--0711----176
BCAN483179:1:Tno347348--347-330350
BCEN331271:2:Tno1937193819411537-2153801942
BCEN331272:3:Tyes2037203820411641-2164202042
BCER226900:1:Tyes20-292-27431-
BCER288681:0:Tno20-28--26438-
BCER315749:1:Tyes8578550884857-8821227-
BCER405917:1:Tyes20-302-28481-
BCER572264:1:Tno20-292-27446-
BCIC186490:0:Tyes-1-146-145-1440
BCLA66692:0:Tyes3638-036-21247-
BFRA272559:1:Tyes--8192741131-0--
BFRA295405:0:Tno--7892970145-0--
BGAR290434:2:Fyes--0747----182
BHAL272558:0:Tyes3537-035-21973-
BHEN283166:0:Tyes636261-63-0-60
BHER314723:0:Fyes--0731----174
BJAP224911:0:Fyes368367366-368-0199365
BLIC279010:0:Tyes201119352-33442-
BLON206672:0:Tyes-101672-103--
BMAL243160:1:Tno531147251986147319880
BMAL320388:1:Tno2298230023026912298069022303
BMAL320389:1:Tyes203320312029120332234022362028
BMEL224914:1:Tno18001799--1800-0321797
BMEL359391:1:Tno314315--314-320317
BOVI236:1:Tyes294295--294-320297
BPAR257311:0:Tno210122125561220558-
BPER257313:0:Tyes210113928961140898-
BPET94624:0:Tyes57457557605742321230577
BPSE272560:1:Tyes4314934228249222840
BPSE320372:1:Tno5315245267352326750
BPSE320373:1:Tno52-5135261151226130
BPUM315750:0:Tyes20-342-32395-
BQUI283165:0:Tyes321-3---0
BSP107806:2:Tyes-014-3-2-
BSP36773:2:Tyes2325232623281923-2192402329
BSP376:0:Tyes012-0-3621423
BSUB:0:Tyes20640342-32512-
BSUI204722:1:Tyes337338-34337-330340
BSUI470137:0:Tno------340-
BSUI470137:1:Tno01--0---3
BTHA271848:1:Tno43142446184236160
BTHE226186:0:Tyes--05252771-2560--
BTHU281309:1:Tno20-28--26426-
BTHU412694:1:Tno20-26--24400-
BTRI382640:1:Tyes656463-65-0-62
BTUR314724:0:Fyes--0728----174
BVIE269482:7:Tyes215321542156174721532174802157
BWEI315730:4:Tyes19861984020131986-20112397-
CABO218497:0:Tyes------0--
CACE272562:1:Tyes--1570-----
CAULO:0:Tyes-2--2635-342637520
CBEI290402:0:Tyes--34030-----
CBLO203907:0:Tyes765--1034
CBLO291272:0:Tno765--1034
CBOT36826:1:Tno---0-----
CBOT441770:0:Tyes---0-----
CBOT441771:0:Tno---0-----
CBOT441772:1:Tno--051-----
CBOT498213:1:Tno--052-----
CBOT508765:1:Tyes--28340-----
CBOT515621:2:Tyes---0-----
CBOT536232:0:Tno--29873037---0-
CBUR227377:1:Tyes15141241550711
CBUR360115:1:Tno15141241550711
CBUR434922:2:Tno0131301215104
CCAV227941:1:Tyes------761-0
CCHL340177:0:Tyes1000-----0-1253
CCON360104:2:Tyes-01344----691696
CCUR360105:0:Tyes--543----0-
CDES477974:0:Tyes187185-4187-20-
CDIF272563:1:Tyes10420851-8382-
CDIP257309:0:Tyes486485484543486---0
CEFF196164:0:Fyes592591590662----0
CFEL264202:1:Tyes------0-783
CFET360106:0:Tyes--0----557552
CGLU196627:0:Tyes780779778846----0
CHOM360107:1:Tyes-------0-
CHUT269798:0:Tyes--77002329-14-2614
CHYD246194:0:Tyes3638-036-34-
CJAP155077:0:Tyes114411431142319903032021141
CJEI306537:0:Tyes36-38036-1-383
CJEJ192222:0:Tyes-0-----936940
CJEJ195099:0:Tno-0-----10821086
CJEJ354242:2:Tyes-0-----915919
CJEJ360109:0:Tyes-0-----474470
CJEJ407148:0:Tno-0-----949953
CKLU431943:1:Tyes--19410-----
CMET456442:0:Tyes--0------
CMIC31964:2:Tyes434241118--116-0
CMIC443906:2:Tyes7576770--2-196
CMUR243161:1:Tyes------0-665
CNOV386415:0:Tyes--0994-----
CPEL335992:0:Tyes----159-0133161
CPER195102:1:Tyes--01700---237-
CPER195103:0:Tno--01909---214-
CPER289380:3:Tyes--01638---209-
CPHY357809:0:Tyes692-1093627692---0
CPNE115711:1:Tyes------845-0
CPNE115713:0:Tno------276-0
CPNE138677:0:Tno------275-0
CPNE182082:0:Tno------283-0
CPRO264201:0:Fyes--672---858-0
CPSY167879:0:Tyes178717881789117873051790
CRUT413404:0:Tyes-113907306-1253050-
CSAL290398:0:Tyes80880981008088181816811
CSP501479:6:Fyes------0--
CSP501479:7:Fyes-------0-
CSP501479:8:Fyes321-----0
CSP78:2:Tyes-0--3758-473450452
CTEP194439:0:Tyes1224--0--124-1462
CTET212717:0:Tyes---0-----
CTRA471472:0:Tyes------0-663
CTRA471473:0:Tno------0-663
CVES412965:0:Tyes-115836290-126-0-
CVIO243365:0:Tyes37483749375014-21303751
DARO159087:0:Tyes3390339133920339038213843393
DDES207559:0:Tyes21-1810--127826180
DETH243164:0:Tyes---0---184-
DGEO319795:1:Tyes699-712----0545
DHAF138119:0:Tyes10101008010601010-10581057-
DNOD246195:0:Tyes962961670-962021723
DOLE96561:0:Tyes707705-0707-123761696
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