CANDIDATE ID: 184

CANDIDATE ID: 184

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9922731e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6365 (ubiF) (b0662)
   Products of gene:
     - OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON (2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase)
       Reactions:
        2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol + oxygen + H+  ->  3-demethylubiquinol-8 + H2O
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5870 (PWY-5870)
         UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))

- G6363 (ybeZ) (b0660)
   Products of gene:
     - G6363-MONOMER (predicted protein with nucleoside triphosphate hydrolase domain)

- G6362 (ybeY) (b0659)
   Products of gene:
     - G6362-MONOMER (conserved protein involved in translation)

- G6361 (ybeX) (b0658)
   Products of gene:
     - G6361-MONOMER (predicted ion transport protein)

- EG12851 (ybeL) (b0643)
   Products of gene:
     - EG12851-MONOMER (conserved protein)

- EG11255 (ybeB) (b0637)
   Products of gene:
     - EG11255-MONOMER (predicted protein)

- EG10855 (lptE) (b0641)
   Products of gene:
     - EG10855-MONOMER (rare lipoprotein LptE)
     - CPLX0-7628 (outer membrane LPS assembly complex)

- EG10532 (leuS) (b0642)
   Products of gene:
     - LEUS-MONOMER (leucyl-tRNA synthetase)
       Reactions:
        tRNAleu + L-leucine + ATP  ->  L-leucyl-tRNAleu + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)

- EG10168 (lnt) (b0657)
   Products of gene:
     - EG10168-MONOMER (apolipoprotein N-acyltransferase)



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 94
Effective number of orgs (counting one per cluster within 468 clusters): 53

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317589
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329539
YPES386656 ncbi Yersinia pestis Pestoides F9
YPES377628 ncbi Yersinia pestis Nepal5169
YPES360102 ncbi Yersinia pestis Antiqua9
YPES349746 ncbi Yersinia pestis Angola9
YPES214092 ncbi Yersinia pestis CO929
YPES187410 ncbi Yersinia pestis KIM 109
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80819
VVUL216895 ncbi Vibrio vulnificus CMCP69
VVUL196600 ncbi Vibrio vulnificus YJ0169
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106339
VFIS312309 ncbi Vibrio fischeri ES1149
VCHO345073 ncbi Vibrio cholerae O3959
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169619
TTUR377629 ncbi Teredinibacter turnerae T79018
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252598
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT29
SSP94122 ncbi Shewanella sp. ANA-39
SSON300269 ncbi Shigella sonnei Ss0469
SSED425104 ncbi Shewanella sediminis HAW-EB39
SPRO399741 ncbi Serratia proteamaculans 5689
SPEA398579 ncbi Shewanella pealeana ATCC 7003459
SONE211586 ncbi Shewanella oneidensis MR-19
SLOI323850 ncbi Shewanella loihica PV-49
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SHAL458817 ncbi Shewanella halifaxensis HAW-EB49
SGLO343509 ncbi Sodalis glossinidius morsitans9
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4769
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B679
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91509
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT189
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty29
SDYS300267 ncbi Shigella dysenteriae Sd1979
SDEN318161 ncbi Shewanella denitrificans OS2179
SDEG203122 ncbi Saccharophagus degradans 2-409
SBOY300268 ncbi Shigella boydii Sb2279
SBAL402882 ncbi Shewanella baltica OS1859
SBAL399599 ncbi Shewanella baltica OS1959
PPRO298386 ncbi Photobacterium profundum SS99
PMUL272843 ncbi Pasteurella multocida multocida Pm708
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO18
PING357804 ncbi Psychromonas ingrahamii 378
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1259
PATL342610 ncbi Pseudoalteromonas atlantica T6c8
NOCE323261 ncbi Nitrosococcus oceani ATCC 197078
NMUL323848 ncbi Nitrosospira multiformis ATCC 251968
MSP400668 ncbi Marinomonas sp. MWYL18
MCAP243233 ncbi Methylococcus capsulatus Bath8
MAQU351348 ncbi Marinobacter aquaeolei VT89
LPNE400673 ncbi Legionella pneumophila Corby8
LPNE297246 ncbi Legionella pneumophila Paris8
LPNE297245 ncbi Legionella pneumophila Lens8
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 18
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785789
ILOI283942 ncbi Idiomarina loihiensis L2TR8
HSOM228400 ncbi Haemophilus somnus 23368
HSOM205914 ncbi Haemophilus somnus 129PT8
HHAL349124 ncbi Halorhodospira halophila SL18
HCHE349521 ncbi Hahella chejuensis KCTC 23968
ESP42895 Enterobacter sp.9
EFER585054 ncbi Escherichia fergusonii ATCC 354699
ECOO157 ncbi Escherichia coli O157:H7 EDL9339
ECOL83334 Escherichia coli O157:H79
ECOL585397 ncbi Escherichia coli ED1a9
ECOL585057 ncbi Escherichia coli IAI399
ECOL585056 ncbi Escherichia coli UMN0269
ECOL585055 ncbi Escherichia coli 559899
ECOL585035 ncbi Escherichia coli S889
ECOL585034 ncbi Escherichia coli IAI19
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL469008 ncbi Escherichia coli BL21(DE3)9
ECOL439855 ncbi Escherichia coli SMS-3-59
ECOL413997 ncbi Escherichia coli B str. REL6069
ECOL409438 ncbi Escherichia coli SE119
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI899
ECOL362663 ncbi Escherichia coli 5369
ECOL331111 ncbi Escherichia coli E24377A9
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
ECOL199310 ncbi Escherichia coli CFT0739
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10439
CPSY167879 ncbi Colwellia psychrerythraea 34H9
CJAP155077 Cellvibrio japonicus8
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN8
CBLO203907 ncbi Candidatus Blochmannia floridanus8
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4499
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL038
APLE416269 ncbi Actinobacillus pleuropneumoniae L208
AHYD196024 Aeromonas hydrophila dhakensis9
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232708
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-18


Names of the homologs of the genes in the group in each of these orgs
  G6365   G6363   G6362   G6361   EG12851   EG11255   EG10855   EG10532   EG10168   
YPSE349747 YPSIP31758_2914YPSIP31758_2916YPSIP31758_2917YPSIP31758_2918YPSIP31758_2924YPSIP31758_2947YPSIP31758_2927YPSIP31758_2926YPSIP31758_2919
YPSE273123 YPTB1114YPTB1112YPTB1111YPTB1110YPTB1104YPTB1099YPTB1102YPTB1103YPTB1109
YPES386656 YPDSF_2631YPDSF_2633YPDSF_2634YPDSF_2636YPDSF_2642YPDSF_2647YPDSF_2644YPDSF_2643YPDSF_2637
YPES377628 YPN_1107YPN_1105YPN_1104YPN_1102YPN_1096YPN_1091YPN_1094YPN_1095YPN_1101
YPES360102 YPA_2476YPA_2478YPA_2479YPA_2480YPA_2486YPA_2491YPA_2488YPA_2487YPA_2481
YPES349746 YPANGOLA_A1828YPANGOLA_A1830YPANGOLA_A1832YPANGOLA_A1833YPANGOLA_A1840YPANGOLA_A1846YPANGOLA_A1843YPANGOLA_A1842YPANGOLA_A1834
YPES214092 YPO2621YPO2619YPO2618YPO2617YPO2611YPO2606YPO2609YPO2610YPO2616
YPES187410 Y1196Y1194Y1193Y1191Y1185Y1180Y1183Y1184Y1190
YENT393305 YE2984YE2986YE2987YE2988YE2995YE3000YE2997YE2996YE2989
VVUL216895 VV1_0265VV1_0267VV1_0268VV1_0269VV1_0271VV1_0276VV1_0274VV1_0272VV1_0270
VVUL196600 VV0918VV0916VV0915VV0914VV0912VV0908VV0910VV0911VV0913
VPAR223926 VP0735VP0732VP0731VP0730VP0728VP0724VP0726VP0727VP0729
VFIS312309 VF0760VF0758VF0757VF0756VF0754VF0750VF0752VF0753VF0755
VCHO345073 VC0395_A0485VC0395_A0483VC0395_A0482VC0395_A0481VC0395_A0479VC0395_A0475VC0395_A0477VC0395_A0478VC0395_A0480
VCHO VC0963VC0961VC0960VC0959VC0957VC0952VC0954VC0956VC0958
TTUR377629 TERTU_0404TERTU_3875TERTU_3876TERTU_3877TERTU_0601TERTU_3886TERTU_3885TERTU_3878
TDEN292415 TBD_2332TBD_2705TBD_2704TBD_2703TBD_2440TBD_2444TBD_2445TBD_2584
STYP99287 STM0671STM0669STM0668STM0667STM0653STM0642STM0647STM0648STM0666
SSP94122 SHEWANA3_1010SHEWANA3_1007SHEWANA3_1006SHEWANA3_1005SHEWANA3_1002SHEWANA3_0997SHEWANA3_1000SHEWANA3_1001SHEWANA3_1004
SSON300269 SSO_0616SSO_0614SSO_0613SSO_0612SSO_0597SSO_0591SSO_0595SSO_0596SSO_0611
SSED425104 SSED_3469SSED_3472SSED_3473SSED_3474SSED_3478SSED_3483SSED_3480SSED_3479SSED_3475
SPRO399741 SPRO_1221SPRO_1218SPRO_1217SPRO_1216SPRO_1208SPRO_1203SPRO_1206SPRO_1207SPRO_1215
SPEA398579 SPEA_3135SPEA_3138SPEA_3139SPEA_3140SPEA_3142SPEA_3147SPEA_3144SPEA_3143SPEA_3141
SONE211586 SO_1183SO_1180SO_1179SO_1178SO_1175SO_1170SO_1173SO_1174SO_1177
SLOI323850 SHEW_2921SHEW_2924SHEW_2925SHEW_2926SHEW_2928SHEW_2933SHEW_2930SHEW_2929SHEW_2927
SHIGELLA YLEBYBEZYBEYYBEXYBELYBEBRLPBLEUSLNT
SHAL458817 SHAL_3220SHAL_3223SHAL_3224SHAL_3225SHAL_3227SHAL_3232SHAL_3229SHAL_3228SHAL_3226
SGLO343509 SG0812SG0810SG0809SG0808SG0804SG0799SG0802SG0803SG0807
SFLE373384 SFV_0665SFV_0667SFV_0668SFV_0669SFV_0683SFV_0689SFV_0685SFV_0684SFV_0670
SFLE198214 AAN42257.1AAN42259.1AAN42260.1AAN42261.1AAN42274.1AAN42280.1AAN42276.1AAN42275.1AAN42262.1
SENT454169 SEHA_C0789SEHA_C0787SEHA_C0786SEHA_C0785SEHA_C0770SEHA_C0758SEHA_C0763SEHA_C0764SEHA_C0784
SENT321314 SCH_0699SCH_0697SCH_0696SCH_0695SCH_0682SCH_0672SCH_0677SCH_0678SCH_0694
SENT295319 SPA2069SPA2071SPA2072SPA2073SPA2081SPA2092SPA2087SPA2086SPA2074
SENT220341 STY0717STY0715STY0714STY0712STY0704STY0693STY0698STY0699STY0711
SENT209261 T2202T2204T2205T2206T2214T2225T2220T2219T2207
SDYS300267 SDY_0598SDY_0596SDY_0595SDY_0594SDY_0567SDY_0559SDY_0563SDY_0564SDY_0593
SDEN318161 SDEN_0817SDEN_0814SDEN_0813SDEN_0812SDEN_0798SDEN_0857SDEN_0796SDEN_0797SDEN_0811
SDEG203122 SDE_3511SDE_3301SDE_3302SDE_3303SDE_0534SDE_3343SDE_3309SDE_3308SDE_3304
SBOY300268 SBO_0526SBO_0524SBO_0523SBO_0522SBO_0507SBO_0501SBO_0505SBO_0506SBO_0521
SBAL402882 SHEW185_3301SHEW185_3304SHEW185_3305SHEW185_3306SHEW185_3310SHEW185_3315SHEW185_3312SHEW185_3311SHEW185_3307
SBAL399599 SBAL195_3437SBAL195_3440SBAL195_3441SBAL195_3442SBAL195_3446SBAL195_3451SBAL195_3448SBAL195_3447SBAL195_3443
PPRO298386 PBPRA2876PBPRA2879PBPRA2880PBPRA2881PBPRA2884PBPRA2888PBPRA2886PBPRA2885PBPRA2882
PMUL272843 PM1002PM1046PM1045PM1033PM1922PM1215PM1214PM1032
PLUM243265 PLU1313PLU1311PLU1310PLU1309PLU1299PLU1302PLU1303PLU1308
PING357804 PING_0536PING_0534PING_0533PING_0532PING_1137PING_1190PING_1191PING_0531
PHAL326442 PSHAA1047PSHAA1045PSHAA1044PSHAA1043PSHAA1032PSHAA1027PSHAA1030PSHAA1031PSHAA1042
PATL342610 PATL_2578PATL_2207PATL_2208PATL_2209PATL_1562PATL_1565PATL_1566PATL_2210
NOCE323261 NOC_2581NOC_0238NOC_0239NOC_0240NOC_2600NOC_2660NOC_2665NOC_0241
NMUL323848 NMUL_A2444NMUL_A2696NMUL_A2697NMUL_A2698NMUL_A0361NMUL_A0512NMUL_A0511NMUL_A0552
MSP400668 MMWYL1_3756MMWYL1_2910MMWYL1_2911MMWYL1_2912MMWYL1_2850MMWYL1_2916MMWYL1_2915MMWYL1_2913
MCAP243233 MCA_1754MCA_1458MCA_1457MCA_1456MCA_2027MCA_1452MCA_1453MCA_1455
MAQU351348 MAQU_3622MAQU_2739MAQU_2740MAQU_2741MAQU_2743MAQU_2415MAQU_2745MAQU_2744MAQU_2742
LPNE400673 LPC_0101LPC_0857LPC_0856LPC_0855LPC_0793LPC_0763LPC_0764LPC_0765
LPNE297246 LPP0093LPP1396LPP1395LPP1394LPP1332LPP1301LPP1302LPP1303
LPNE297245 LPL0081LPL1600LPL1601LPL1602LPL1328LPL1300LPL1301LPL1302
LPNE272624 LPG0079LPG1441LPG1440LPG1439LPG1377LPG1347LPG1348LPG1349
KPNE272620 GKPORF_B5112GKPORF_B5109GKPORF_B5108GKPORF_B5107GKPORF_B5099GKPORF_B5093GKPORF_B5097GKPORF_B5098GKPORF_B5106
ILOI283942 IL0939IL0942IL0943IL0944IL0951IL0948IL0947IL0945
HSOM228400 HSM_1573HSM_0614HSM_0615HSM_0111HSM_0195HSM_0468HSM_0467HSM_0112
HSOM205914 HS_1156HS_0345HS_0346HS_0237HS_0323HS_1556HS_1557HS_0238
HHAL349124 HHAL_2225HHAL_0892HHAL_0891HHAL_0890HHAL_2146HHAL_2140HHAL_2145HHAL_0889
HCHE349521 HCH_00760HCH_05349HCH_05350HCH_05351HCH_05353HCH_05845HCH_05355HCH_05352
ESP42895 ENT638_1188ENT638_1186ENT638_1185ENT638_1184ENT638_1177ENT638_1172ENT638_1175ENT638_1176ENT638_1183
EFER585054 EFER_2440EFER_2442EFER_2443EFER_2444EFER_2463EFER_2468EFER_2465EFER_2464EFER_2445
ECOO157 YLEBYBEZYBEYYBEXYBELYBEBRLPBLEUSLNT
ECOL83334 ECS0700ECS0698ECS0697ECS0696ECS0681ECS0675ECS0679ECS0680ECS0695
ECOL585397 ECED1_0653ECED1_0651ECED1_0650ECED1_0649ECED1_0640ECED1_0634ECED1_0638ECED1_0639ECED1_0648
ECOL585057 ECIAI39_0629ECIAI39_0627ECIAI39_0626ECIAI39_0625ECIAI39_0618ECIAI39_0612ECIAI39_0616ECIAI39_0617ECIAI39_0624
ECOL585056 ECUMN_0755ECUMN_0753ECUMN_0752ECUMN_0751ECUMN_0737ECUMN_0731ECUMN_0735ECUMN_0736ECUMN_0750
ECOL585055 EC55989_0657EC55989_0655EC55989_0654EC55989_0653EC55989_0635EC55989_0629EC55989_0633EC55989_0634EC55989_0652
ECOL585035 ECS88_0697ECS88_0695ECS88_0694ECS88_0693ECS88_0685ECS88_0679ECS88_0683ECS88_0684ECS88_0692
ECOL585034 ECIAI1_0646ECIAI1_0644ECIAI1_0643ECIAI1_0642ECIAI1_0627ECIAI1_0621ECIAI1_0625ECIAI1_0626ECIAI1_0641
ECOL481805 ECOLC_2983ECOLC_2985ECOLC_2986ECOLC_2987ECOLC_3002ECOLC_3008ECOLC_3004ECOLC_3003ECOLC_2988
ECOL469008 ECBD_2989ECBD_2991ECBD_2992ECBD_2993ECBD_3008ECBD_3014ECBD_3010ECBD_3009ECBD_2994
ECOL439855 ECSMS35_0685ECSMS35_0682ECSMS35_0681ECSMS35_0680ECSMS35_0663ECSMS35_0657ECSMS35_0661ECSMS35_0662ECSMS35_0678
ECOL413997 ECB_00630ECB_00628ECB_00627ECB_00626ECB_00612ECB_00606ECB_00610ECB_00611ECB_00625
ECOL409438 ECSE_0733ECSE_0731ECSE_0730ECSE_0729ECSE_0712ECSE_0705ECSE_0710ECSE_0711ECSE_0728
ECOL405955 APECO1_1401APECO1_1403APECO1_1404APECO1_1405APECO1_1413APECO1_1414APECO1_14132APECO1_1406
ECOL364106 UTI89_C0660UTI89_C0658UTI89_C0657UTI89_C0656UTI89_C0646UTI89_C0639UTI89_C0644UTI89_C0645UTI89_C0655
ECOL362663 ECP_0685ECP_0683ECP_0682ECP_0681ECP_0673ECP_0667ECP_0671ECP_0672ECP_0680
ECOL331111 ECE24377A_0692ECE24377A_0689ECE24377A_0688ECE24377A_0687ECE24377A_0669ECE24377A_0663ECE24377A_0667ECE24377A_0668ECE24377A_0686
ECOL316407 ECK0654:JW0659:B0662ECK0652:JW0657:B0660ECK0651:JW0656:B0659ECK0650:JW0655:B0658ECK0636:JW0638:B0643ECK0630:JW5090:B0637ECK0634:JW0636:B0641ECK0635:JW0637:B0642ECK0649:JW0654:B0657
ECOL199310 C0748C0745C0744C0743C0734C0728C0732C0733C0742
ECAR218491 ECA1320ECA1318ECA1317ECA1316ECA1310ECA1305ECA1308ECA1309ECA1315
CPSY167879 CPS_3568CPS_3573CPS_3574CPS_3575CPS_1723CPS_1717CPS_1721CPS_1722CPS_3576
CJAP155077 CJA_0295CJA_1638CJA_1637CJA_1636CJA_0787CJA_0453CJA_0454CJA_1635
CBLO291272 BPEN_266BPEN_325BPEN_324BPEN_323BPEN_318BPEN_320BPEN_321BPEN_322
CBLO203907 BFL318BFL317BFL316BFL315BFL310BFL312BFL313BFL314
ASAL382245 ASA_1075ASA_1073ASA_1072ASA_1071ASA_1069ASA_1064ASA_1067ASA_1068ASA_1070
APLE434271 APJL_1780APJL_0339APJL_0692APJL_0390APJL_1634APJL_0885APJL_0884APJL_0389
APLE416269 APL_1744APL_0324APL_0694APL_0372APL_1601APL_0873APL_0872APL_0371
AHYD196024 AHA_3240AHA_3242AHA_3243AHA_3244AHA_3246AHA_3252AHA_3248AHA_3247AHA_3245
AFER243159 AFE_0715AFE_2443AFE_2442AFE_2441AFE_0160AFE_2579AFE_2578AFE_2440
AEHR187272 MLG_0232MLG_0395MLG_0396MLG_0397MLG_0399MLG_0405MLG_0400MLG_0398


Organism features enriched in list (features available for 90 out of the 94 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0010925592
Arrangment:Pairs 0.000229730112
Disease:Bubonic_plague 0.000011766
Disease:Dysentery 0.000011766
Disease:Gastroenteritis 9.001e-71013
Disease:Legionnaire's_disease 0.000536344
Endospores:No 0.003694022211
GC_Content_Range4:0-40 4.320e-910213
GC_Content_Range4:40-60 1.567e-2276224
GC_Content_Range4:60-100 3.584e-84145
GC_Content_Range7:30-40 9.054e-78166
GC_Content_Range7:40-50 0.000010634117
GC_Content_Range7:50-60 6.331e-1242107
GC_Content_Range7:60-70 2.782e-74134
Genome_Size_Range5:0-2 4.041e-112155
Genome_Size_Range5:2-4 0.000856118197
Genome_Size_Range5:4-6 5.601e-2168184
Genome_Size_Range9:2-3 0.00222169120
Genome_Size_Range9:4-5 4.573e-83496
Genome_Size_Range9:5-6 3.069e-93488
Gram_Stain:Gram_Neg 8.334e-1986333
Motility:No 9.571e-112151
Motility:Yes 3.735e-1068267
Oxygen_Req:Aerobic 0.000010012185
Oxygen_Req:Anaerobic 1.373e-71102
Oxygen_Req:Facultative 4.181e-2272201
Pathogenic_in:Human 0.003077544213
Pathogenic_in:No 0.000368921226
Shape:Coccus 6.001e-6182
Shape:Rod 2.282e-1079347
Temp._range:Psychrophilic 0.000613369



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 95
Effective number of orgs (counting one per cluster within 468 clusters): 84

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 231
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL357544 ncbi Helicobacter pylori HPAG11
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CNOV386415 ncbi Clostridium novyi NT1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G6365   G6363   G6362   G6361   EG12851   EG11255   EG10855   EG10532   EG10168   
UURE95667
UURE95664 UUR10_0561
UPAR505682
UMET351160
TWHI218496 TW0463
TWHI203267 TW283
TVOL273116
TPEN368408
TKOD69014
TACI273075
STOK273063
SSOL273057
SMAR399550
SACI330779
RALB246199 GRAORF_0928
PTOR263820
PRUM264731 GFRORF0880
PISL384616
PINT246198 PIN_A1724
PHOR70601
PGIN242619 PG_0272
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
NPHA348780 NP1414A
MTHE349307
MTHE187420
MSYN262723 MS53_0389
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633 MYPE3350
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_1977
MMAR267377
MLAB410358 MLAB_1278
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_3011
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
LINT267671 LIC_12556
LINT189518 LA1124
LBOR355277 LBJ_0206
LBOR355276 LBL_2876
IHOS453591
HWAL362976 HQ3705A
HSP64091 VNG6302C
HSAL478009 OE5193F
HPYL357544 HPAG1_1496
HMUK485914 HMUK_0760
HMAR272569 RRNAC2600
HBUT415426
FJOH376686 FJOH_1539
DETH243164 DET_0194
CTET212717
CSUL444179
CNOV386415 NT01CX_1509
CMET456442 MBOO_1891
CMAQ397948
CKOR374847
CKLU431943 CKL_2840
CHOM360107 CHAB381_0473
CBOT515621
CBOT508765 CLL_A3454
CBOT498213 CLD_1613
CBOT441772 CLI_2985
CBOT441771
CBOT441770
CBOT36826
CBEI290402 CBEI_3992
CACE272562 CAC1422
CABO218497 CAB819
BXEN266265
AYEL322098
AURANTIMONAS
APER272557
AFUL224325


Organism features enriched in list (features available for 88 out of the 95 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.004804559
Arrangment:Singles 2.077e-663286
Disease:Botulism 0.002092345
Disease:Leptospirosis 0.000489544
Endospores:No 1.796e-1363211
GC_Content_Range4:0-40 0.000201547213
GC_Content_Range4:60-100 0.00004148145
GC_Content_Range7:0-30 9.205e-102447
GC_Content_Range7:60-70 0.00019258134
Genome_Size_Range5:0-2 1.397e-846155
Genome_Size_Range5:4-6 0.000020612184
Genome_Size_Range9:0-1 5.340e-71527
Genome_Size_Range9:1-2 0.000779431128
Genome_Size_Range9:5-6 0.0000264288
Gram_Stain:Gram_Neg 1.046e-826333
Gram_Stain:Gram_Pos 0.003481413150
Habitat:Aquatic 0.00492842291
Habitat:Multiple 0.000376514178
Habitat:Specialized 0.00005031953
Optimal_temp.:- 1.291e-619257
Optimal_temp.:100 0.003339933
Optimal_temp.:35-40 0.003339933
Optimal_temp.:37 0.000810727106
Optimal_temp.:85 0.000489544
Oxygen_Req:Aerobic 0.004335118185
Oxygen_Req:Anaerobic 8.008e-1645102
Oxygen_Req:Facultative 0.001888919201
Pathogenic_in:Human 0.000220718213
Pathogenic_in:No 0.000970147226
Salinity:Extreme_halophilic 0.001093457
Shape:Irregular_coccus 3.107e-131617
Shape:Rod 3.227e-829347
Shape:Sphere 1.349e-111619
Temp._range:Hyperthermophilic 1.196e-101723
Temp._range:Mesophilic 0.000012356473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 2
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CBLO203907 ncbi Candidatus Blochmannia floridanus 0.00049896568
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN 0.00076136928


Names of the homologs of the genes in the group in each of these orgs
  G6365   G6363   G6362   G6361   EG12851   EG11255   EG10855   EG10532   EG10168   
CBLO203907 BFL318BFL317BFL316BFL315BFL310BFL312BFL313BFL314
CBLO291272 BPEN_266BPEN_325BPEN_324BPEN_323BPEN_318BPEN_320BPEN_321BPEN_322


Organism features enriched in list (features available for 2 out of the 2 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
GC_Content_Range7:0-30 0.0063718247
Genome_Size_Range9:0-1 0.0020689227



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50420.5687
GALACTITOLCAT-PWY (galactitol degradation)73510.5575
AST-PWY (arginine degradation II (AST pathway))120670.5560
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218900.5370
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.5060
GLYCOCAT-PWY (glycogen degradation I)246900.4851
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37290.4443
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176710.4427
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195740.4311
ECASYN-PWY (enterobacterial common antigen biosynthesis)191730.4297
LYXMET-PWY (L-lyxose degradation)87460.4253
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91470.4224
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31250.4191
SORBDEG-PWY (sorbitol degradation II)53340.4180
PWY0-1319 (CDP-diacylglycerol biosynthesis II)296910.4161
PHOSLIPSYN-PWY (phospholipid biosynthesis I)290900.4157
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))291900.4143
THREONINE-DEG2-PWY (threonine degradation II)214760.4128
PWY-46 (putrescine biosynthesis III)138590.4123
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))300910.4105
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81430.4104
PWY-5918 (heme biosynthesis I)272860.4065
MANNIDEG-PWY (mannitol degradation I)99480.4056
LACTOSEUTIL-PWY (lactose degradation II)53330.4019
PWY-5921 (L-glutamine biosynthesis II (tRNA-dependent))40112-.4542



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6363   G6362   G6361   EG12851   EG11255   EG10855   EG10532   EG10168   
G63650.9990650.9990060.9989520.99880.9985540.9986980.9990480.99887
G63630.9999930.99990.998980.9992010.9990160.9992580.999792
G63620.9999310.9990220.9992280.9990250.9993040.999836
G63610.9990760.9988850.9990850.9992740.999895
EG128510.9990530.9992420.9993890.999143
EG112550.999170.9994790.998817
EG108550.9996020.999197
EG105320.999397
EG10168



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PAIRWISE BLAST SCORES:

  G6365   G6363   G6362   G6361   EG12851   EG11255   EG10855   EG10532   EG10168   
G63650.0f0--------
G6363-0.0f0-------
G6362--0.0f0------
G6361---0.0f0-----
EG12851----0.0f0----
EG11255-----0.0f0---
EG10855------0.0f0--
EG10532-------0.0f0-
EG10168--------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10532 EG10855 EG11255 EG12851 (centered at EG10532)
EG10168 G6361 G6362 G6363 G6365 (centered at G6362)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6365   G6363   G6362   G6361   EG12851   EG11255   EG10855   EG10532   EG10168   
237/623411/623417/623371/62373/623406/623101/623405/623367/623
AAEO224324:0:Tyes-378379--320--0
AAUR290340:2:Tyes-210---17-
AAVE397945:0:Tyes-10191020964-0--963
ABAC204669:0:Tyes-3543-3540-0-13172338
ABAU360910:0:Tyes2402012-1377-16633
ABOR393595:0:Tyes667012-18-125
ABUT367737:0:Tyes--477----0-
ACAU438753:0:Tyes4274-0--4175-5602
ACEL351607:0:Tyes-012----420
ACRY349163:8:Tyes3591336-1338---20390
ADEH290397:0:Tyes-253325313662-0-25392529
AEHR187272:0:Tyes0162163164166172-167165
AFER243159:0:Tyes541224822472246-0238023792245
AHYD196024:0:Tyes0234612875
ALAI441768:0:Tyes--400-----
AMAR234826:0:Tyes--198--0---
AMAR329726:9:Tyes2969-392----0745
AMET293826:0:Tyes-165416520-947-948-
ANAE240017:0:Tyes-61-63-0--255
AORE350688:0:Tyes-5655670-----
APHA212042:0:Tyes--1014--0---
APLE416269:0:Tyes1460036848-130854954847
APLE434271:0:Tno1460033351-130752152050
ASAL382245:5:Tyes1198750346
ASP1667:3:Tyes-2-0-154-17-
ASP232721:2:Tyes-308230830-1330--1
ASP62928:0:Tyes0585960-2936-253861
ASP62977:0:Tyes671255525561-2477-25000
ASP76114:2:Tyes1617321-1541-17860
AVAR240292:3:Tyes031331560----3720-
BABO262698:1:Tno87327328--31-0330
BAFZ390236:2:Fyes---0----186
BAMB339670:3:Tno0238223832385-1966-1302386
BAMB398577:3:Tno0219121922195-1792-1272196
BAMY326423:0:Tyes-57550-85-418-
BANT260799:0:Tno-20--26-433-
BANT261594:2:Tno-20--28-434-
BANT568206:2:Tyes-20--28-454-
BANT592021:2:Tno-20--28-452-
BAPH198804:0:Tyes--01---2-
BAPH372461:0:Tyes--0----1-
BBAC264462:0:Tyes--198-----0
BBAC360095:0:Tyes464855856857-0--858
BBRO257310:0:Tyes3304321-526-20380
BBUR224326:21:Fno---0----176
BCAN483179:1:Tno97347348--33-0350
BCEN331271:2:Tno2438193719381941-1538-01942
BCEN331272:3:Tyes0216521662169-1770-1282170
BCER226900:1:Tyes-20--27-431-
BCER288681:0:Tno-20--26-438-
BCER315749:1:Tyes-8578550-882-1227-
BCER405917:1:Tyes-20--28-481-
BCER572264:1:Tno-20--27-446-
BCIC186490:0:Tyes--1----1440
BCLA66692:0:Tyes-3436--0-1245-
BFRA272559:1:Tyes---819-0---
BFRA295405:0:Tno---789-0---
BGAR290434:2:Fyes---0----182
BHAL272558:0:Tyes-3335--0-1971-
BHEN283166:0:Tyes1280636261-0--60
BHER314723:0:Fyes---0----174
BJAP224911:0:Fyes175368367366-0-199365
BLIC279010:0:Tyes-201119-33-442-
BLON206672:0:Tyes--10-103---
BMAL243160:0:Tno0--------
BMAL243160:1:Tno-531-1473-19880
BMAL320388:0:Tno0--------
BMAL320388:1:Tno-229622982300-688-02301
BMAL320389:0:Tyes0--------
BMAL320389:1:Tyes-203320312029-0-22362028
BMEL224914:1:Tno018531852--53-851850
BMEL359391:1:Tno79314315--32-0317
BOVI236:1:Tyes77294295--32-0297
BPAR257311:0:Tno2874210-1220-558-
BPER257313:0:Tyes2022210-1140-898-
BPET94624:0:Tyes0337333743375-2800-30293376
BPSE272560:1:Tyes2405431-492-22840
BPSE320372:1:Tno2808531-523-26750
BPSE320373:1:Tno275752--512-26130
BPUM315750:0:Tyes-20--32-395-
BQUI283165:0:Tyes896321----0
BSP107806:2:Tyes--01---2-
BSP36773:2:Tyes0245624572459-2055-1312460
BSP376:0:Tyes256012-362-1423
BSUB:0:Tyes-20640-32-512-
BSUI204722:1:Tyes86337338--33-0340
BSUI470137:0:Tno-----34-0-
BSUI470137:1:Tno0250251-----253
BTHA271848:1:Tno2284431-423-6160
BTHE226186:0:Tyes---0-2560---
BTHU281309:1:Tno-20--26-426-
BTHU412694:1:Tno-20--24-400-
BTRI382640:1:Tyes1808656463-0--62
BTUR314724:0:Fyes---0----174
BVIE269482:7:Tyes0227322742276-1868-1202277
BWEI315730:4:Tyes-198619840-2011-2397-
CABO218497:0:Tyes-----0---
CACE272562:1:Tyes---0-----
CAULO:0:Tyes56-2--3426-37520
CBEI290402:0:Tyes---0-----
CBLO203907:0:Tyes8765-0234
CBLO291272:0:Tno0595857-52545556
CBOT441772:1:Tno---0-----
CBOT498213:1:Tno---0-----
CBOT508765:1:Tyes---0-----
CBOT536232:0:Tno---2987---0-
CBUR227377:1:Tyes0472471469-457-464468
CBUR360115:1:Tno0489488486-474-481485
CBUR434922:2:Tno509013-15-104
CCAV227941:1:Tyes-----761--0
CCHL340177:0:Tyes-1000---0--1253
CCON360104:2:Tyes--01344---691696
CCUR360105:0:Tyes---543---0-
CDES477974:0:Tyes-187185--2-0-
CDIF272563:1:Tyes-10420-83-82-
CDIP257309:0:Tyes-486485484----0
CEFF196164:0:Fyes-592591590----0
CFEL264202:1:Tyes-----0--783
CFET360106:0:Tyes---0---557552
CGLU196627:0:Tyes-780779778----0
CHOM360107:1:Tyes-------0-
CHUT269798:0:Tyes---756-0--2600
CHYD246194:0:Tyes-3335--0-1-
CJAP155077:0:Tyes0130012991298-4761571581297
CJEI306537:0:Tyes-35-37-0--382
CJEJ192222:0:Tyes--0----936940
CJEJ195099:0:Tno--0----10821086
CJEJ354242:2:Tyes--0----915919
CJEJ360109:0:Tyes--0----474470
CJEJ407148:0:Tno--0----949953
CKLU431943:1:Tyes---0-----
CMET456442:0:Tyes---0-----
CMIC31964:2:Tyes-434241-116--0
CMIC443906:2:Tyes-737475-0--194
CMUR243161:1:Tyes-----0--665
CNOV386415:0:Tyes---0-----
CPEL335992:0:Tyes-----0-133161
CPER195102:1:Tyes---0---237-
CPER195103:0:Tno---0---214-
CPER289380:3:Tyes---0---209-
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ZMOB264203:0:Tyes1673210-1633--201



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