CANDIDATE ID: 190

CANDIDATE ID: 190

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9936211e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12691 (yciM) (b1280)
   Products of gene:
     - EG12691-MONOMER (conserved protein)

- EG11265 (cmk) (b0910)
   Products of gene:
     - CMPKI-MONOMER (cytidylate kinase)
       Reactions:
        CMP + ATP  =  CDP + ADP + H+
         In pathways
         PWY0-163 (salvage pathways of pyrimidine ribonucleotides)
         P1-PWY (P1-PWY)

- EG11143 (ubiG) (b2232)
   Products of gene:
     - DHHB-METHYLTRANSFER-MONOMER (UbiG)
     - DHHB-METHYLTRANSFER-CPLX (bifunctional 3-demethylubiquinone-8 3-O-methyltransferase and 2-octaprenyl-6-hydroxyphenol methylase)
       Reactions:
        2-octaprenyl-6-hydroxyphenol + S-adenosyl-L-methionine  ->  2-octaprenyl-6-methoxyphenol + S-adenosyl-L-homocysteine + H+
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))
        3-demethylubiquinol-8 + S-adenosyl-L-methionine  ->  ubiquinol-8 + S-adenosyl-L-homocysteine + 2 H+
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5870 (PWY-5870)
         UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))

- EG10946 (serC) (b0907)
   Products of gene:
     - PSERTRANSAM-MONOMER (SerC)
     - PSERTRANSAM-CPLX (phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase)
       Reactions:
        2-oxo-3-hydroxy-4-phosphobutanoate + L-glutamate  =  4-phospho-hydroxy-L-threonine + 2-oxoglutarate
         In pathways
         PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)
         PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)
        3-phospho-L-serine + 2-oxoglutarate  =  3-phospho-hydroxypyruvate + L-glutamate
         In pathways
         SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)
         SER-GLYSYN-PWY (superpathway of serine and glycine biosynthesis I)
         SERSYN-PWY (serine biosynthesis)

- EG10900 (rpsA) (b0911)
   Products of gene:
     - EG10900-MONOMER (30S ribosomal subunit protein S1)
     - CPLX0-3953 (30S ribosomal subunit)
       Regulatees:
        TU00345 (rpsB-tsf)
     - CPLX0-3964 (ribosome)

- EG10707 (pheA) (b2599)
   Products of gene:
     - CHORISMUTPREPHENDEHYDRAT-MONOMER (PheA)
     - CHORISMUTPREPHENDEHYDRAT-CPLX (chorismate mutase / prephenate dehydratase)
       Reactions:
        chorismate  ->  prephenate
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         COMPLETE-ARO-PWY (superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis)
         PWY-3481 (PWY-3481)
         PHESYN (phenylalanine biosynthesis I)
         TYRSYN (tyrosine biosynthesis I)
         PWY-3462 (PWY-3462)
         PWY-3461 (PWY-3461)
         PWY-6120 (PWY-6120)
        prephenate + H+  ->  phenylpyruvate + CO2 + H2O
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         COMPLETE-ARO-PWY (superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis)
         PHESYN (phenylalanine biosynthesis I)

- EG10441 (ihfB) (b0912)
   Products of gene:
     - PD00348 (integration host factor (IHF), β subunit)
     - PC00027 (IHF transcriptional dual regulator)
       Regulatees:
        TU00392 (csgDEFG)
        TU0-13666 (glmY)
        TU0-1198 (uspB)
        TU00431 (uspA)
        TU00410 (fimB)
        TU00114 (atoDAEB)
        TU0-6401 (folA)
        TU0-8761 (dcuD)
        TU00284 (hipBA)
        TU0-1122 (dmsABC)
        TU0-1681 (sodB)
        TU0-2042 (gcd)
        TU0-2041 (hpt)
        TU00326 (pspABCDE)
        TU0-2742 (hemF)
        TU0-2741 (amiA-hemF)
        TU0-2621 (sufABCDSE)
        TU0-3341 (ygjG)
        TU0-3901 (sra)
        TU0-3723 (acs-yjcHG)
        TU0-3721 (acs-yjcHG)
        TU0-4441 (norVW)
        TU0-5001 (ibpB)
        TU0-5163 (ulaG)
        TU0-5162 (ulaABCDEF)
        TU0-5741 (pspG)
        TU00369 (ubiCA)
        TU0-1962 (glcDEFGBA)
        TU861 (yeiL)
        TU0-6629 (ssuEADCB)
        TU00199 (nrfABCDEFG)
        TU0-14693 (pstSCA)
        TU0-14692 (pstS)
        TU00202 (pstSCAB-phoU)
        TU00110 (carAB)
        TU00106 (gltA)
        TU00103 (sucABCD)
        TU0-4201 (hemA-prfA-prmC)
        TU00078 (cysJIH)
        TU00158 (ndh)
        TU0-8344 (hypABCDE-fhlA)
        TU00154 (hypABCDE)
        TU00153 (hycABCDEFGHI)
        TU00176 (dps)
        TU00172 (glnHPQ)
        TU00125 (tdcABCDEFG)
        TU00247 (caiTABCDE)
        TU00310 (nuoABCEFGHIJKLMN)
        TU00403 (ecpD-htrE)
        TU00263 (ecpD-htrE)
        TU00262 (dppABCDF)
        TU00136 (flhDC)
        TU00064 (sodA)
        TU00093 (mtr)
        TU00088 (tyrP)
        TU0-1981 (osmY)
        TU00235 (adiA)
        TU00477 (ompC)
        TU00404 (ecpD-htrE)
        TU00398 (osmE)
        TU00182 (gltBDF)
        TU0-2644 (micF)
        TU00377 (focA-pflB)
        TU221 (rpoH)
        TU61 (rtcBA)
        TU182 (fimAICDFGH)
        TU161 (ompR-envZ)
        TU4 (paaZ)
        TU5 (paaABCDEFGHIJK)
        TU356 (nmpC)
        TU368 (yiaJ)
        TU524 (ilvLXG_1G_2MEDA)
        TU525 (ilvLXG_1G_2MEDA)
        TU592 (yiaKLMNO-lyx-sgbHUE)
        TU00175 (ihfB)
        TU00174 (ihfA)
        TU00001 (aceBAK)
        TU00216 (glpTQ)
        TU00021 (dusB-fis)
        TU00050 (ompF)
        TU00049 (ompC)
        TU00046 (nirBDC-cysG)
        TU00045 (narK)
        TU00044 (narGHJI)
        TU0-14287 (yjbEFGH)
        TU0-14111 (yjbE)

- EG10423 (gyrA) (b2231)
   Products of gene:
     - EG10423-MONOMER (DNA gyrase, subunit A)
     - CPLX0-2425 (DNA gyrase)
       Reactions:
        EC# 5.99.1.3

- EG10073 (aroA) (b0908)
   Products of gene:
     - AROA-MONOMER (3-phosphoshikimate-1-carboxyvinyltransferase)
       Reactions:
        shikimate-3-phosphate + phosphoenolpyruvate  =  5-enolpyruvyl-shikimate-3-phosphate + phosphate
         In pathways
         PWY-6165 (PWY-6165)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         COMPLETE-ARO-PWY (superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis)
         PWY-6163 (PWY-6163)
         ARO-PWY (chorismate biosynthesis I)



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 169
Effective number of orgs (counting one per cluster within 468 clusters): 106

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317589
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329539
YPES386656 ncbi Yersinia pestis Pestoides F9
YPES377628 ncbi Yersinia pestis Nepal5169
YPES360102 ncbi Yersinia pestis Antiqua9
YPES349746 ncbi Yersinia pestis Angola9
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80819
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A9
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110189
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103319
XFAS405440 ncbi Xylella fastidiosa M129
XFAS183190 ncbi Xylella fastidiosa Temecula19
XFAS160492 ncbi Xylella fastidiosa 9a5c9
XCAM487884 Xanthomonas campestris pv. paulliniae9
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-109
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80049
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339139
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3069
VVUL216895 ncbi Vibrio vulnificus CMCP69
VVUL196600 ncbi Vibrio vulnificus YJ0169
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106339
VFIS312309 ncbi Vibrio fischeri ES1149
VEIS391735 ncbi Verminephrobacter eiseniae EF01-29
VCHO345073 ncbi Vibrio cholerae O3959
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169619
TTUR377629 ncbi Teredinibacter turnerae T79018
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252599
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT29
SSP94122 ncbi Shewanella sp. ANA-39
SSON300269 ncbi Shigella sonnei Ss0469
SSED425104 ncbi Shewanella sediminis HAW-EB39
SPRO399741 ncbi Serratia proteamaculans 5689
SPEA398579 ncbi Shewanella pealeana ATCC 7003459
SONE211586 ncbi Shewanella oneidensis MR-19
SLOI323850 ncbi Shewanella loihica PV-49
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SHAL458817 ncbi Shewanella halifaxensis HAW-EB49
SGLO343509 ncbi Sodalis glossinidius morsitans9
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB8
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4769
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B679
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91509
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT189
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty29
SDYS300267 ncbi Shigella dysenteriae Sd1979
SDEN318161 ncbi Shewanella denitrificans OS2179
SBOY300268 ncbi Shigella boydii Sb2279
SBAL402882 ncbi Shewanella baltica OS1859
SBAL399599 ncbi Shewanella baltica OS1959
RSOL267608 ncbi Ralstonia solanacearum GMI10009
RMET266264 ncbi Ralstonia metallidurans CH349
RFER338969 ncbi Rhodoferax ferrireducens T1189
REUT381666 ncbi Ralstonia eutropha H169
REUT264198 ncbi Ralstonia eutropha JMP1349
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30008
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a8
PSTU379731 ncbi Pseudomonas stutzeri A15018
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-19
PSP296591 ncbi Polaromonas sp. JS6669
PPUT76869 ncbi Pseudomonas putida GB-18
PPUT351746 ncbi Pseudomonas putida F18
PPRO298386 ncbi Photobacterium profundum SS99
PNAP365044 ncbi Polaromonas naphthalenivorans CJ29
PMUL272843 ncbi Pasteurella multocida multocida Pm709
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO19
PING357804 ncbi Psychromonas ingrahamii 378
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1259
PFLU216595 ncbi Pseudomonas fluorescens SBW258
PFLU205922 ncbi Pseudomonas fluorescens Pf0-18
PENT384676 ncbi Pseudomonas entomophila L488
PATL342610 ncbi Pseudoalteromonas atlantica T6c9
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA148
NOCE323261 ncbi Nitrosococcus oceani ATCC 197079
NMUL323848 ncbi Nitrosospira multiformis ATCC 251968
NMEN374833 ncbi Neisseria meningitidis 0534429
NMEN272831 ncbi Neisseria meningitidis FAM189
NMEN122587 ncbi Neisseria meningitidis Z24919
NMEN122586 ncbi Neisseria meningitidis MC589
NGON242231 ncbi Neisseria gonorrhoeae FA 10909
NEUT335283 ncbi Nitrosomonas eutropha C918
NEUR228410 ncbi Nitrosomonas europaea ATCC 197188
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E8
MSP400668 ncbi Marinomonas sp. MWYL19
MPET420662 ncbi Methylibium petroleiphilum PM19
MFLA265072 ncbi Methylobacillus flagellatus KT9
MCAP243233 ncbi Methylococcus capsulatus Bath8
MAQU351348 ncbi Marinobacter aquaeolei VT89
LPNE400673 ncbi Legionella pneumophila Corby8
LPNE297246 ncbi Legionella pneumophila Paris8
LPNE297245 ncbi Legionella pneumophila Lens8
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 18
LCHO395495 ncbi Leptothrix cholodnii SP-69
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785789
JSP375286 ncbi Janthinobacterium sp. Marseille9
ILOI283942 ncbi Idiomarina loihiensis L2TR8
HSOM228400 ncbi Haemophilus somnus 23369
HSOM205914 ncbi Haemophilus somnus 129PT9
HINF71421 ncbi Haemophilus influenzae Rd KW208
HINF281310 ncbi Haemophilus influenzae 86-028NP8
HHAL349124 ncbi Halorhodospira halophila SL19
HDUC233412 ncbi Haemophilus ducreyi 35000HP9
HCHE349521 ncbi Hahella chejuensis KCTC 23968
HARS204773 ncbi Herminiimonas arsenicoxydans9
GMET269799 ncbi Geobacter metallireducens GS-158
ESP42895 Enterobacter sp.9
EFER585054 ncbi Escherichia fergusonii ATCC 354699
ECOO157 ncbi Escherichia coli O157:H7 EDL9339
ECOL83334 Escherichia coli O157:H79
ECOL585397 ncbi Escherichia coli ED1a9
ECOL585057 ncbi Escherichia coli IAI399
ECOL585056 ncbi Escherichia coli UMN0269
ECOL585055 ncbi Escherichia coli 559899
ECOL585035 ncbi Escherichia coli S889
ECOL585034 ncbi Escherichia coli IAI19
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL469008 ncbi Escherichia coli BL21(DE3)9
ECOL439855 ncbi Escherichia coli SMS-3-59
ECOL413997 ncbi Escherichia coli B str. REL6069
ECOL409438 ncbi Escherichia coli SE119
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI899
ECOL362663 ncbi Escherichia coli 5369
ECOL331111 ncbi Escherichia coli E24377A9
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
ECOL199310 ncbi Escherichia coli CFT0739
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10439
DOLE96561 ncbi Desulfococcus oleovorans Hxd38
DNOD246195 ncbi Dichelobacter nodosus VCS1703A8
DARO159087 ncbi Dechloromonas aromatica RCB9
CVIO243365 ncbi Chromobacterium violaceum ATCC 124729
CSAL290398 ncbi Chromohalobacter salexigens DSM 30439
CPSY167879 ncbi Colwellia psychrerythraea 34H9
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1118
CBUR360115 ncbi Coxiella burnetii RSA 3318
CBUR227377 ncbi Coxiella burnetii RSA 4938
BVIE269482 ncbi Burkholderia vietnamiensis G49
BTHA271848 ncbi Burkholderia thailandensis E2649
BSP36773 Burkholderia sp.9
BPSE320373 ncbi Burkholderia pseudomallei 6689
BPSE320372 ncbi Burkholderia pseudomallei 1710b9
BPSE272560 ncbi Burkholderia pseudomallei K962439
BPET94624 Bordetella petrii9
BPER257313 ncbi Bordetella pertussis Tohama I9
BPAR257311 ncbi Bordetella parapertussis 128229
BMAL320389 ncbi Burkholderia mallei NCTC 102479
BMAL320388 ncbi Burkholderia mallei SAVP19
BMAL243160 ncbi Burkholderia mallei ATCC 233449
BCEN331272 ncbi Burkholderia cenocepacia HI24249
BCEN331271 ncbi Burkholderia cenocepacia AU 10549
BBRO257310 ncbi Bordetella bronchiseptica RB509
BAMB398577 ncbi Burkholderia ambifaria MC40-69
BAMB339670 ncbi Burkholderia ambifaria AMMD9
ASP76114 ncbi Aromatoleum aromaticum EbN19
ASP62928 ncbi Azoarcus sp. BH729
ASP232721 ncbi Acidovorax sp. JS429
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4499
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL039
APLE416269 ncbi Actinobacillus pleuropneumoniae L209
AHYD196024 Aeromonas hydrophila dhakensis9
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232709
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-18
ABOR393595 ncbi Alcanivorax borkumensis SK29
ABAU360910 ncbi Bordetella avium 197N9
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3458
AAVE397945 ncbi Acidovorax citrulli AAC00-19


Names of the homologs of the genes in the group in each of these orgs
  EG12691   EG11265   EG11143   EG10946   EG10900   EG10707   EG10441   EG10423   EG10073   
YPSE349747 YPSIP31758_1915YPSIP31758_2581YPSIP31758_2768YPSIP31758_2583YPSIP31758_2580YPSIP31758_3218YPSIP31758_2579YPSIP31758_2767YPSIP31758_2582
YPSE273123 YPTB2147YPTB1416YPTB1255YPTB1414YPTB1417YPTB0843YPTB1418YPTB1256YPTB1415
YPES386656 YPDSF_0909YPDSF_2304YPDSF_2478YPDSF_2306YPDSF_2303YPDSF_2917YPDSF_2302YPDSF_2477YPDSF_2305
YPES377628 YPN_1694YPN_2586YPN_2762YPN_2588YPN_2585YPN_0815YPN_2584YPN_2761YPN_2587
YPES360102 YPA_1585YPA_0682YPA_0929YPA_0680YPA_0683YPA_2773YPA_0684YPA_0930YPA_0681
YPES349746 YPANGOLA_A2234YPANGOLA_A1954YPANGOLA_A1311YPANGOLA_A1952YPANGOLA_A1955YPANGOLA_A3482YPANGOLA_A1956YPANGOLA_A1310YPANGOLA_A1953
YPES214092 YPO2225YPO1391YPO1215YPO1389YPO1392YPO1393YPO1216YPO1390
YPES187410 Y2067Y2782Y2973Y2784Y2781Y2779Y2972Y2783
YENT393305 YE1968YE1539YE1394YE1537YE1540YE0852YE1541YE1395YE1538
XORY360094 XOOORF_2491XOOORF_2495XOOORF_2010XOOORF_2213XOOORF_2494XOOORF_2214XOOORF_2493XOOORF_2195XOOORF_2215
XORY342109 XOO2053XOO2049XOO2548XOO2268XOO2050XOO2267XOO2051XOO2284XOO2266
XORY291331 XOO2183XOO2179XOO2702XOO2388XOO2180XOO2387XOO2181XOO2406XOO2386
XFAS405440 XFASM12_1594XFASM12_1598XFASM12_1631XFASM12_1498XFASM12_1597XFASM12_1497XFASM12_1596XFASM12_2123XFASM12_1496
XFAS183190 PD_1453PD_1457PD_1488PD_1358PD_1456PD_1357PD_1455PD_1935PD_1356
XFAS160492 XF2435XF2439XF2471XF2326XF2438XF2325XF2437XF2552XF2324
XCAM487884 XCC-B100_1989XCC-B100_1985XCC-B100_1909XCC-B100_2671XCC-B100_1986XCC-B100_2670XCC-B100_1987XCC-B100_2686XCC-B100_2669
XCAM316273 XCAORF_2459XCAORF_2463XCAORF_2540XCAORF_1868XCAORF_2462XCAORF_1869XCAORF_2461XCAORF_1853XCAORF_1871
XCAM314565 XC_1927XC_1923XC_1846XC_2645XC_1924XC_2644XC_1925XC_2660XC_2643
XCAM190485 XCC2191XCC2195XCC2269XCC1589XCC2194XCC1590XCC2193XCC1574XCC1591
XAXO190486 XAC2295XAC2299XAC2377XAC1648XAC2298XAC1649XAC2297XAC1631XAC1650
VVUL216895 VV1_2978VV1_2983VV1_3040VV1_2813VV1_2982VV1_0487VV1_2980VV1_3038VV1_2127
VVUL196600 VV1303VV1299VV1246VV1451VV1300VV0709VV1301VV1247VV2318
VPAR223926 VP2027VP2031VP1933VP1247VP2030VP0555VP2029VP1932VP1020
VFIS312309 VF1756VF1760VF1203VF0899VF1759VF0561VF1758VF1204VF1761
VEIS391735 VEIS_3911VEIS_3123VEIS_3117VEIS_3120VEIS_3124VEIS_3121VEIS_3125VEIS_3119VEIS_3123
VCHO345073 VC0395_A1502VC0395_A1506VC0395_A0876VC0395_A0728VC0395_A1505VC0395_A0235VC0395_A1504VC0395_A0877VC0395_A1334
VCHO VC1912VC1916VC1257VC1159VC1915VC0705VC1914VC1258VC1732
TTUR377629 TERTU_1392TERTU_1390TERTU_1380TERTU_1393TERTU_1383TERTU_1399TERTU_1382TERTU_1384
TDEN292415 TBD_0959TBD_0955TBD_0946TBD_0949TBD_0956TBD_0951TBD_0957TBD_0948TBD_0954
STYP99287 STM1708STM0980STM2276STM0977STM0981STM2667STM0982STM2272STM0978
SSP94122 SHEWANA3_1980SHEWANA3_1976SHEWANA3_1971SHEWANA3_1973SHEWANA3_1977SHEWANA3_3007SHEWANA3_1978SHEWANA3_1972SHEWANA3_1975
SSON300269 SSO_1860SSO_0912SSO_2290SSO_0908SSO_0913SSO_2750SSO_0914SSO_2289SSO_0909
SSED425104 SSED_2295SSED_2299SSED_2304SSED_2302SSED_2298SSED_1168SSED_2297SSED_2303SSED_2300
SPRO399741 SPRO_2650SPRO_1708SPRO_3270SPRO_1706SPRO_1709SPRO_0881SPRO_1710SPRO_3269SPRO_1707
SPEA398579 SPEA_2076SPEA_2072SPEA_2066SPEA_2069SPEA_2073SPEA_1059SPEA_2074SPEA_2067SPEA_2071
SONE211586 SO_2399SO_2403SO_2413SO_2410SO_2402SO_1367SO_2401SO_2411SO_2404
SLOI323850 SHEW_1957SHEW_1953SHEW_1948SHEW_1950SHEW_1954SHEW_1072SHEW_1955SHEW_1949SHEW_1952
SHIGELLA YCIMCMKUBIGSERCRPSAPHEAHIMDGYRAAROA
SHAL458817 SHAL_2048SHAL_2044SHAL_2038SHAL_2041SHAL_2045SHAL_1107SHAL_2046SHAL_2039SHAL_2043
SGLO343509 SG1413SG0992SG1583SG0990SG0993SG0580SG0994SG1582SG0991
SFUM335543 SFUM_2117SFUM_3425SFUM_2083SFUM_2118SFUM_3724SFUM_1425SFUM_2690SFUM_2720
SFLE373384 SFV_1293SFV_0911SFV_2303SFV_0907SFV_0912SFV_2872SFV_0913SFV_2302SFV_0908
SFLE198214 AAN42896.1AAN42536.1AAN43828.1AAN42532.1AAN42537.1AAN44155.1AAN42538.1AAN43827.1AAN42533.1
SENT454169 SEHA_C1895SEHA_C1078SEHA_C2516SEHA_C1075SEHA_C1079SEHA_C2882SEHA_C1080SEHA_C2512SEHA_C1076
SENT321314 SCH_1703SCH_0934SCH_2279SCH_0931SCH_0935SCH_2669SCH_0936SCH_2275SCH_0932
SENT295319 SPA1168SPA1818SPA0588SPA1821SPA1817SPA2526SPA1816SPA0592SPA1820
SENT220341 STY1343STY0980STY2505STY0977STY0981STY2854STY0982STY2499STY0978
SENT209261 T1621T1954T0588T1957T1953T2622T1952T0592T1956
SDYS300267 SDY_1356SDY_2348SDY_2424SDY_2354SDY_2347SDY_2767SDY_2346SDY_2423SDY_2353
SDEN318161 SDEN_1756SDEN_1752SDEN_1949SDEN_1947SDEN_1753SDEN_2747SDEN_1754SDEN_1948SDEN_1751
SBOY300268 SBO_1784SBO_2198SBO_2064SBO_2193SBO_2199SBO_2637SBO_2200SBO_2065SBO_2194
SBAL402882 SHEW185_2276SHEW185_2280SHEW185_2288SHEW185_2286SHEW185_2279SHEW185_1264SHEW185_2278SHEW185_2287SHEW185_2281
SBAL399599 SBAL195_2393SBAL195_2397SBAL195_2405SBAL195_2403SBAL195_2396SBAL195_1297SBAL195_2395SBAL195_2404SBAL195_2398
RSOL267608 RSC0912RSC0908RSC0898RSC0903RSC0909RSC0904RSC0910RSC0901RSC0907
RMET266264 RMET_0725RMET_0721RMET_0711RMET_0715RMET_0722RMET_0716RMET_0723RMET_0713RMET_0719
RFER338969 RFER_1563RFER_1567RFER_2828RFER_1570RFER_1566RFER_1569RFER_1565RFER_1571RFER_1567
REUT381666 H16_A0801H16_A0797H16_A0787H16_A0791H16_A0798H16_A0792H16_A0799H16_A0789H16_A0795
REUT264198 REUT_A2566REUT_A2570REUT_A2580REUT_A2576REUT_A2569REUT_A2575REUT_A2568REUT_A2578REUT_A2572
PSYR223283 PSPTO_1749PSPTO_1742PSPTO_1746PSPTO_1750PSPTO_1747PSPTO_1751PSPTO_1745PSPTO_1041
PSYR205918 PSYR_3643PSYR_3650PSYR_3646PSYR_3642PSYR_3645PSYR_3641PSYR_3647PSYR_0888
PSTU379731 PST_2338PST_2323PST_2342PST_2337PST_2341PST_2506PST_2343PST_2339
PSP312153 PNUC_0502PNUC_0499PNUC_0491PNUC_0494PNUC_0500PNUC_0495PNUC_0501PNUC_0493PNUC_0498
PSP296591 BPRO_1786BPRO_1790BPRO_1797BPRO_1793BPRO_1789BPRO_1792BPRO_1788BPRO_1795BPRO_1790
PPUT76869 PPUTGB1_1362PPUTGB1_1356PPUTGB1_1359PPUTGB1_1363PPUTGB1_1360PPUTGB1_1365PPUTGB1_1358PPUTGB1_1361
PPUT351746 PPUT_3943PPUT_3949PPUT_3946PPUT_3942PPUT_3945PPUT_3941PPUT_3947PPUT_3944
PPRO298386 PBPRA2447PBPRA2451PBPRA2457PBPRA2455PBPRA2450PBPRA3024PBPRA2449PBPRA2456PBPRA2452
PNAP365044 PNAP_2799PNAP_2795PNAP_2788PNAP_2792PNAP_2796PNAP_2793PNAP_2797PNAP_2790PNAP_2795
PMUL272843 PM0798PM0802PM0840PM0837PM0801PM0150PM0800PM0841PM0839
PLUM243265 PLU2428PLU1621PLU3051PLU1619PLU1622PLU1265PLU1623PLU3050PLU1620
PING357804 PING_3010PING_3014PING_1113PING_1115PING_3013PING_3012PING_1114PING_1117
PHAL326442 PSHAA1428PSHAA1424PSHAA1420PSHAA1422PSHAA1425PSHAA0950PSHAA1426PSHAA1421PSHAA1423
PFLU216595 PFLU1648PFLU1639PFLU1644PFLU1649PFLU1645PFLU1651PFLU1643PFLU2774
PFLU205922 PFL_4073PFL_4081PFL_4077PFL_4072PFL_4076PFL_4060PFL_4078PFL_4074
PENT384676 PSEEN1491PSEEN1484PSEEN1488PSEEN1492PSEEN1489PSEEN1493PSEEN1487PSEEN1490
PATL342610 PATL_2464PATL_2467PATL_2471PATL_2469PATL_2466PATL_1590PATL_2465PATL_2470PATL_2468
PAER208963 PA14_23320PA14_23220PA14_23270PA14_23330PA14_23280PA14_23340PA14_23260PA14_23310
NOCE323261 NOC_0185NOC_0179NOC_2296NOC_0172NOC_0180NOC_0174NOC_0181NOC_0171NOC_0177
NMUL323848 NMUL_A2070NMUL_A2186NMUL_A2190NMUL_A2069NMUL_A2192NMUL_A2068NMUL_A2189NMUL_A2071
NMEN374833 NMCC_1803NMCC_1213NMCC_0169NMCC_1540NMCC_1214NMCC_1697NMCC_1215NMCC_1298NMCC_1342
NMEN272831 NMC1831NMC1237NMC2009NMC1554NMC1238NMC1705NMC1239NMC1320NMC1366
NMEN122587 NMA2148NMA1514NMA0410NMA1894NMA1515NMA2039NMA1516NMA1599NMA1644
NMEN122586 NMB_0339NMB_1300NMB_2030NMB_1640NMB_1301NMB_0446NMB_1302NMB_1384NMB_1432
NGON242231 NGO1662NGO0605NGO2074NGO1283NGO0604NGO1510NGO0603NGO0629NGO0900
NEUT335283 NEUT_0399NEUT_2507NEUT_1572NEUT_0400NEUT_1570NEUT_0401NEUT_1573NEUT_0398
NEUR228410 NE1963NE2547NE0333NE1962NE0335NE1961NE0332NE1964
MSUC221988 MS1473MS1477MS1573MS1476MS1657MS1475MS0858MS1575
MSP400668 MMWYL1_3221MMWYL1_2856MMWYL1_2861MMWYL1_2859MMWYL1_2855MMWYL1_2858MMWYL1_3223MMWYL1_2860MMWYL1_2386
MPET420662 MPE_A2247MPE_A2243MPE_A2236MPE_A2240MPE_A2244MPE_A2241MPE_A2245MPE_A2238MPE_A2243
MFLA265072 MFLA_1068MFLA_1072MFLA_1576MFLA_1687MFLA_1071MFLA_1686MFLA_1070MFLA_1688MFLA_1073
MCAP243233 MCA_1410MCA_1414MCA_1272MCA_1420MCA_1413MCA_1418MCA_1411MCA_1421
MAQU351348 MAQU_1030MAQU_1026MAQU_2495MAQU_1022MAQU_1027MAQU_1023MAQU_1028MAQU_1021MAQU_1025
LPNE400673 LPC_0839LPC_0836LPC_1128LPC_0834LPC_0837LPC_3270LPC_0833LPC_0835
LPNE297246 LPP1378LPP1375LPP1664LPP1373LPP1376LPP3026LPP1372LPP1374
LPNE297245 LPL1374LPL1371LPL1658LPL1369LPL1372LPL2884LPL1368LPL1370
LPNE272624 LPG1423LPG1420LPG1699LPG1418LPG1421LPG2955LPG1417LPG1419
LCHO395495 LCHO_0967LCHO_0963LCHO_0957LCHO_3014LCHO_0964LCHO_0961LCHO_0965LCHO_0959LCHO_0963
KPNE272620 GKPORF_B0297GKPORF_B5379GKPORF_B1943GKPORF_B5377GKPORF_B5380GKPORF_B2253GKPORF_B5381GKPORF_B1942GKPORF_B5378
JSP375286 MMA_2665MMA_2669MMA_2678MMA_2674MMA_2668MMA_2673MMA_2667MMA_2675MMA_2670
ILOI283942 IL1352IL1356IL1361IL1359IL1355IL1354IL1360IL1357
HSOM228400 HSM_1451HSM_1455HSM_1579HSM_0962HSM_1454HSM_0635HSM_1453HSM_1580HSM_0964
HSOM205914 HS_0973HS_0977HS_1162HS_0611HS_0976HS_0365HS_0975HS_1163HS_0613
HINF71421 HI_1223HI_1219HI_1167HI_1220HI_1145HI_1221HI_1264HI_1589
HINF281310 NTHI1945NTHI1949NTHI1335NTHI1948NTHI1313NTHI1947NTHI1900NTHI1462
HHAL349124 HHAL_0560HHAL_0564HHAL_0575HHAL_0570HHAL_0563HHAL_0568HHAL_0562HHAL_0571HHAL_0565
HDUC233412 HD_1355HD_1351HD_1750HD_1382HD_1352HD_0873HD_1353HD_1748HD_1383
HCHE349521 HCH_04975HCH_04979HCH_04357HCH_04982HCH_04978HCH_06095HCH_04977HCH_04983
HARS204773 HEAR2571HEAR2575HEAR2584HEAR2580HEAR2574HEAR2579HEAR2573HEAR2581HEAR2576
GMET269799 GMET_1506GMET_0865GMET_0721GMET_0867GMET_0862GMET_0868GMET_0005GMET_0864
ESP42895 ENT638_2188ENT638_1429ENT638_2800ENT638_1427ENT638_1430ENT638_3077ENT638_1431ENT638_2799ENT638_1428
EFER585054 EFER_1674EFER_1054EFER_0933EFER_1052EFER_1055EFER_0470EFER_1056EFER_0934EFER_1053
ECOO157 YCIMCMKUBIGSERCRPSAPHEAHIMDGYRAAROA
ECOL83334 ECS1853ECS0993ECS3115ECS0990ECS0994ECS3462ECS0995ECS3114ECS0991
ECOL585397 ECED1_1490ECED1_0937ECED1_2698ECED1_0934ECED1_0938ECED1_3038ECED1_0939ECED1_2697ECED1_0935
ECOL585057 ECIAI39_1621ECIAI39_2237ECIAI39_2373ECIAI39_2241ECIAI39_2236ECIAI39_2803ECIAI39_2235ECIAI39_2369ECIAI39_2240
ECOL585056 ECUMN_1582ECUMN_1103ECUMN_2569ECUMN_1100ECUMN_1104ECUMN_2924ECUMN_1105ECUMN_2568ECUMN_1101
ECOL585055 EC55989_1441EC55989_0955EC55989_2480EC55989_0952EC55989_0956EC55989_2888EC55989_0957EC55989_2479EC55989_0953
ECOL585035 ECS88_1420ECS88_0938ECS88_2380ECS88_0935ECS88_0939ECS88_2785ECS88_0940ECS88_2379ECS88_0936
ECOL585034 ECIAI1_1303ECIAI1_0951ECIAI1_2310ECIAI1_0947ECIAI1_0952ECIAI1_2720ECIAI1_0953ECIAI1_2309ECIAI1_0948
ECOL481805 ECOLC_2346ECOLC_2686ECOLC_1419ECOLC_2689ECOLC_2685ECOLC_1084ECOLC_2684ECOLC_1420ECOLC_2688
ECOL469008 ECBD_2339ECBD_2685ECBD_1428ECBD_2688ECBD_2684ECBD_1087ECBD_2683ECBD_1429ECBD_2687
ECOL439855 ECSMS35_1849ECSMS35_2210ECSMS35_2383ECSMS35_2214ECSMS35_2209ECSMS35_2751ECSMS35_2208ECSMS35_2379ECSMS35_2213
ECOL413997 ECB_01257ECB_00914ECB_02158ECB_00911ECB_00915ECB_02488ECB_00916ECB_02157ECB_00912
ECOL409438 ECSE_1330ECSE_0969ECSE_2493ECSE_0966ECSE_0970ECSE_2883ECSE_0971ECSE_2492ECSE_0967
ECOL405955 APECO1_440APECO1_22APECO1_4328APECO1_19APECO1_23APECO1_3934APECO1_4329APECO1_20
ECOL364106 UTI89_C1551UTI89_C0981UTI89_C2513UTI89_C0978UTI89_C0982UTI89_C2932UTI89_C0983UTI89_C2512UTI89_C0979
ECOL362663 ECP_1333ECP_0921ECP_2275ECP_0918ECP_0922ECP_2600ECP_0923ECP_2274ECP_0919
ECOL331111 ECE24377A_1482ECE24377A_1007ECE24377A_2527ECE24377A_1004ECE24377A_1008ECE24377A_2883ECE24377A_1009ECE24377A_2526ECE24377A_1005
ECOL316407 ECK1275:JW1272:B1280ECK0901:JW0893:B0910ECK2224:JW2226:B2232ECK0898:JW0890:B0907ECK0902:JW0894:B0911ECK2596:JW2580:B2599ECK0903:JW0895:B0912ECK2223:JW2225:B2231ECK0899:JW0891:B0908
ECOL199310 C1749C1048C2774C1045C1049C3120C1050C2773C1046
ECAR218491 ECA1956ECA2592ECA1200ECA2594ECA2591ECA3350ECA2590ECA1201ECA2593
DOLE96561 DOLE_1773DOLE_1982DOLE_3221DOLE_1981DOLE_1950DOLE_3207DOLE_0673DOLE_1949
DNOD246195 DNO_0563DNO_0112DNO_0538DNO_0670DNO_0113DNO_0114DNO_0321DNO_0111
DARO159087 DARO_1283DARO_1279DARO_1227DARO_1231DARO_1280DARO_1232DARO_1281DARO_1230DARO_1279
CVIO243365 CV_3043CV_3047CV_1031CV_2301CV_3046CV_2355CV_3045CV_2298CV_3048
CSAL290398 CSAL_2154CSAL_2164CSAL_1858CSAL_2167CSAL_2163CSAL_2166CSAL_2152CSAL_2168CSAL_2165
CPSY167879 CPS_2338CPS_2334CPS_2330CPS_2332CPS_2335CPS_1221CPS_2336CPS_2331CPS_2333
CBUR434922 COXBU7E912_1533COXBU7E912_1536COXBU7E912_1729COXBU7E912_1538COXBU7E912_1535COXBU7E912_0262COXBU7E912_1539COXBU7E912_1537
CBUR360115 COXBURSA331_A0644COXBURSA331_A0641COXBURSA331_A0458COXBURSA331_A0639COXBURSA331_A0642COXBURSA331_A1931COXBURSA331_A0638COXBURSA331_A0640
CBUR227377 CBU_0530CBU_0527CBU_0350CBU_0525CBU_0528CBU_1738CBU_0524CBU_0526
BVIE269482 BCEP1808_0971BCEP1808_0967BCEP1808_0959BCEP1808_0963BCEP1808_0968BCEP1808_0964BCEP1808_0969BCEP1808_0961BCEP1808_0966
BTHA271848 BTH_I1641BTH_I1637BTH_I1630BTH_I1634BTH_I1638BTH_I1635BTH_I1639BTH_I1632BTH_I1636
BSP36773 BCEP18194_A4163BCEP18194_A4159BCEP18194_A4151BCEP18194_A4155BCEP18194_A4160BCEP18194_A4156BCEP18194_A4161BCEP18194_A4153BCEP18194_A4158
BPSE320373 BURPS668_2879BURPS668_2883BURPS668_2892BURPS668_2886BURPS668_2882BURPS668_2885BURPS668_2881BURPS668_2888BURPS668_2884
BPSE320372 BURPS1710B_A3238BURPS1710B_A3242BURPS1710B_A3250BURPS1710B_A3245BURPS1710B_A3241BURPS1710B_A3244BURPS1710B_A3240BURPS1710B_A3247BURPS1710B_A3243
BPSE272560 BPSL2512BPSL2516BPSL2523BPSL2519BPSL2515BPSL2518BPSL2514BPSL2521BPSL2517
BPET94624 BPET1893BPET1889BPET1881BPET1884BPET1890BPET1885BPET1891BPET1883BPET1888
BPER257313 BP0953BP0949BP0942BP0945BP0950BP0946BP0951BP0944BP0948
BPAR257311 BPP3125BPP3129BPP3136BPP3133BPP3128BPP3132BPP3127BPP3134BPP3130
BMAL320389 BMA10247_0205BMA10247_0200BMA10247_0191BMA10247_0197BMA10247_0201BMA10247_0198BMA10247_0202BMA10247_0195BMA10247_0199
BMAL320388 BMASAVP1_A2568BMASAVP1_A2573BMASAVP1_A2582BMASAVP1_A2576BMASAVP1_A2572BMASAVP1_A2575BMASAVP1_A2571BMASAVP1_A2578BMASAVP1_A2574
BMAL243160 BMA_0424BMA_0429BMA_0437BMA_0433BMA_0428BMA_0432BMA_0427BMA_0435BMA_0430
BCEN331272 BCEN2424_1050BCEN2424_1046BCEN2424_1038BCEN2424_1042BCEN2424_1047BCEN2424_1043BCEN2424_1048BCEN2424_1040BCEN2424_1045
BCEN331271 BCEN_0571BCEN_0567BCEN_0559BCEN_0563BCEN_0568BCEN_0564BCEN_0569BCEN_0561BCEN_0566
BBRO257310 BB3464BB3468BB3475BB3472BB3467BB3471BB3466BB3473BB3469
BAMB398577 BAMMC406_0930BAMMC406_0926BAMMC406_0918BAMMC406_0922BAMMC406_0927BAMMC406_0923BAMMC406_0928BAMMC406_0920BAMMC406_0925
BAMB339670 BAMB_0926BAMB_0922BAMB_0914BAMB_0918BAMB_0923BAMB_0919BAMB_0924BAMB_0916BAMB_0921
ASP76114 EBA900EBA904EBA914EBA907EBA903EBA906EBA902EBA909EBA904
ASP62928 AZO1075AZO1071AZO2589AZO1067AZO1072AZO1068AZO1073AZO1066AZO1071
ASP232721 AJS_2472AJS_2468AJS_2462AJS_2465AJS_2469AJS_2466AJS_2470AJS_2464AJS_2468
ASAL382245 ASA_1771ASA_1767ASA_1948ASA_1858ASA_1768ASA_3238ASA_1769ASA_1949ASA_1859
APLE434271 APJL_0739APJL_0743APJL_0296APJL_0700APJL_0742APJL_1051APJL_0741APJL_0297APJL_0697
APLE416269 APL_0737APL_0741APL_0285APL_0702APL_0740APL_1033APL_0739APL_0286APL_0699
AHYD196024 AHA_1812AHA_1808AHA_2331AHA_1978AHA_1809AHA_1092AHA_1810AHA_2330AHA_1979
AFER243159 AFE_2138AFE_2142AFE_1260AFE_2149AFE_2141AFE_2147AFE_2139AFE_2150AFE_2143
AEHR187272 MLG_0934MLG_0930MLG_0910MLG_0924MLG_0931MLG_0926MLG_0932MLG_0923
ABOR393595 ABO_1742ABO_1746ABO_1753ABO_1750ABO_1745ABO_1749ABO_1744ABO_1751ABO_1747
ABAU360910 BAV1357BAV1353BAV1345BAV1348BAV1354BAV1349BAV1355BAV1347BAV1352
ABAC204669 ACID345_0917ACID345_3221ACID345_1190ACID345_4661ACID345_2043ACID345_4105ACID345_4772ACID345_3614
AAVE397945 AAVE_3288AAVE_3284AAVE_3278AAVE_3281AAVE_3285AAVE_3282AAVE_3286AAVE_3280AAVE_3284


Organism features enriched in list (features available for 163 out of the 169 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00013931292
Arrangment:Pairs 0.004423642112
Arrangment:Singles 0.006267992286
Disease:Bubonic_plague 0.000446666
Disease:Dysentery 0.000446666
Disease:Gastroenteritis 0.00026761013
Disease:Legionnaire's_disease 0.005949144
Disease:Meningitis_and_septicemia 0.005949144
Endospores:No 5.403e-930211
GC_Content_Range4:0-40 5.410e-2411213
GC_Content_Range4:40-60 2.290e-14103224
GC_Content_Range7:30-40 3.008e-1511166
GC_Content_Range7:50-60 4.893e-1463107
GC_Content_Range7:60-70 0.003832549134
Genome_Size_Range5:0-2 9.957e-214155
Genome_Size_Range5:2-4 0.000507039197
Genome_Size_Range5:4-6 3.767e-21100184
Genome_Size_Range9:1-2 7.813e-164128
Genome_Size_Range9:4-5 2.397e-85096
Genome_Size_Range9:5-6 3.813e-105088
Genome_Size_Range9:6-8 0.00161491938
Gram_Stain:Gram_Neg 4.334e-31151333
Habitat:Specialized 0.0015967653
Motility:No 2.835e-1113151
Motility:Yes 3.409e-9106267
Optimal_temp.:35-37 4.466e-81313
Oxygen_Req:Anaerobic 4.297e-88102
Oxygen_Req:Facultative 2.266e-987201
Pathogenic_in:Animal 0.00292722866
Pathogenic_in:No 3.579e-640226
Pathogenic_in:Plant 0.00025121115
Shape:Coccus 0.0000502982
Shape:Rod 7.932e-12132347
Shape:Spiral 0.0001392134
Temp._range:Mesophilic 0.0001403147473
Temp._range:Thermophilic 0.0001010135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 53
Effective number of orgs (counting one per cluster within 468 clusters): 48

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TVOL273116 ncbi Thermoplasma volcanium GSS11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P21
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
PTOR263820 ncbi Picrophilus torridus DSM 97901
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE51
MSYN262723 ncbi Mycoplasma synoviae 530
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MART243272 ncbi Mycoplasma arthritidis 158L3-10
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL357544 ncbi Helicobacter pylori HPAG11
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
CTET212717 ncbi Clostridium tetani E881
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K11
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1


Names of the homologs of the genes in the group in each of these orgs
  EG12691   EG11265   EG11143   EG10946   EG10900   EG10707   EG10441   EG10423   EG10073   
UURE95667
UURE95664 UUR10_0088
UPAR505682
TVOL273116 TVN0861
TPEN368408
TPAL243276 TP_0279
TKOD69014 TK0263
TACI273075
STOK273063
SSOL273057 SSO0246
SMAR399550
SACI330779
RSAL288705 RSAL33209_2299
PTOR263820 PTO1013
PMAR74547 PMT1689
PISL384616
PHOR70601
PAST100379 PAM239
PARS340102
PAER178306
PABY272844 PAB0306
MSYN262723
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MART243272
HWAL362976 HQ3358A
HSP64091 VNG1232G
HSAL478009 OE2762R
HPYL357544 HPAG1_0993
HMAR272569 RRNAC0127
HBUT415426
HACI382638
CTET212717 CTC_00090
BXEN266265
BTUR314724
BHER314723
BGAR290434
BBUR224326
BAFZ390236
AYEL322098 AYWB_482
AURANTIMONAS
APER272557 APE0569
ALAI441768 ACL_0218


Organism features enriched in list (features available for 49 out of the 53 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0074105292
Arrangment:Singles 0.000015538286
Disease:Enzootic_pneumonia 0.006931822
Disease:Lyme_disease 0.006931822
Disease:Tick-borne_relapsing_fever 0.006931822
Disease:Urogenital_or_respiratory_tract_infections 0.006931822
Endospores:No 1.107e-1140211
GC_Content_Range4:0-40 0.000148330213
GC_Content_Range4:60-100 0.00153724145
GC_Content_Range7:0-30 1.357e-91847
GC_Content_Range7:60-70 0.00362024134
Genome_Size_Range5:0-2 5.212e-1134155
Genome_Size_Range5:4-6 8.049e-81184
Genome_Size_Range9:0-1 6.653e-111527
Genome_Size_Range9:1-2 0.002520519128
Genome_Size_Range9:4-5 0.0010403196
Gram_Stain:Gram_Neg 0.003229119333
Gram_Stain:Gram_Pos 0.00003922150
Habitat:Multiple 1.979e-62178
Habitat:Specialized 4.458e-61553
Optimal_temp.:- 0.000617611257
Pathogenic_in:Swine 0.004752635
Salinity:Extreme_halophilic 0.001220647
Salinity:Non-halophilic 0.001944517106
Shape:Irregular_coccus 0.0081922517
Shape:Pleomorphic 0.000152658
Shape:Rod 1.026e-108347
Shape:Sphere 2.447e-141519
Shape:Spiral 0.0036271834
Temp._range:Hyperthermophilic 2.842e-71123
Temp._range:Mesophilic 0.000368830473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 15
Effective number of orgs (counting one per cluster within 468 clusters): 10

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M12 0.001783511779
XFAS183190 ncbi Xylella fastidiosa Temecula1 0.001954611899
NGON242231 ncbi Neisseria gonorrhoeae FA 1090 0.001969511909
XFAS160492 ncbi Xylella fastidiosa 9a5c 0.002393912169
NMEN374833 ncbi Neisseria meningitidis 053442 0.002411812179
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-1 0.002540012249
NMEN122586 ncbi Neisseria meningitidis MC58 0.002615912289
NMEN272831 ncbi Neisseria meningitidis FAM18 0.002753712359
NMEN122587 ncbi Neisseria meningitidis Z2491 0.003048712499
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 23270 0.004345312999
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri) 0.00484973516
HDUC233412 ncbi Haemophilus ducreyi 35000HP 0.006402913569
NOCE323261 ncbi Nitrosococcus oceani ATCC 19707 0.007118113729
HHAL349124 ncbi Halorhodospira halophila SL1 0.007501613809
DNOD246195 ncbi Dichelobacter nodosus VCS1703A 0.00914229498


Names of the homologs of the genes in the group in each of these orgs
  EG12691   EG11265   EG11143   EG10946   EG10900   EG10707   EG10441   EG10423   EG10073   
XFAS405440 XFASM12_1594XFASM12_1598XFASM12_1631XFASM12_1498XFASM12_1597XFASM12_1497XFASM12_1596XFASM12_2123XFASM12_1496
XFAS183190 PD_1453PD_1457PD_1488PD_1358PD_1456PD_1357PD_1455PD_1935PD_1356
NGON242231 NGO1662NGO0605NGO2074NGO1283NGO0604NGO1510NGO0603NGO0629NGO0900
XFAS160492 XF2435XF2439XF2471XF2326XF2438XF2325XF2437XF2552XF2324
NMEN374833 NMCC_1803NMCC_1213NMCC_0169NMCC_1540NMCC_1214NMCC_1697NMCC_1215NMCC_1298NMCC_1342
PSP312153 PNUC_0502PNUC_0499PNUC_0491PNUC_0494PNUC_0500PNUC_0495PNUC_0501PNUC_0493PNUC_0498
NMEN122586 NMB_0339NMB_1300NMB_2030NMB_1640NMB_1301NMB_0446NMB_1302NMB_1384NMB_1432
NMEN272831 NMC1831NMC1237NMC2009NMC1554NMC1238NMC1705NMC1239NMC1320NMC1366
NMEN122587 NMA2148NMA1514NMA0410NMA1894NMA1515NMA2039NMA1516NMA1599NMA1644
AFER243159 AFE_2138AFE_2142AFE_1260AFE_2149AFE_2141AFE_2147AFE_2139AFE_2150AFE_2143
BAPH372461 BCC_192BCC_190BCC_244BCC_189BCC_116BCC_191
HDUC233412 HD_1355HD_1351HD_1750HD_1382HD_1352HD_0873HD_1353HD_1748HD_1383
NOCE323261 NOC_0185NOC_0179NOC_2296NOC_0172NOC_0180NOC_0174NOC_0181NOC_0171NOC_0177
HHAL349124 HHAL_0560HHAL_0564HHAL_0575HHAL_0570HHAL_0563HHAL_0568HHAL_0562HHAL_0571HHAL_0565
DNOD246195 DNO_0563DNO_0112DNO_0538DNO_0670DNO_0113DNO_0114DNO_0321DNO_0111


Organism features enriched in list (features available for 15 out of the 15 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Citrus_variegated_chlorosis 0.000618922
Disease:Meningitis_and_septicemia 2.865e-744
GC_Content_Range4:40-60 0.000968912224
GC_Content_Range7:50-60 0.000036010107
Genome_Size_Range5:2-4 0.000247412197
Genome_Size_Range9:2-3 0.000011311120
Habitat:Host-associated 0.002301311206
Optimal_temp.:26-28 0.000618922
Optimal_temp.:35-37 6.087e-6513



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181490.6802
GLYCOCAT-PWY (glycogen degradation I)2461530.6371
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001650.6042
AST-PWY (arginine degradation II (AST pathway))120980.5992
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761190.5714
PWY-1269 (CMP-KDO biosynthesis I)3251660.5625
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951250.5613
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911210.5417
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911530.5359
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251320.5334
PWY-5918 (heme biosynthesis I)2721470.5329
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961540.5328
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901520.5308
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481660.5206
PWY-4041 (γ-glutamyl cycle)2791470.5178
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861480.5102
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81690.5048
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491000.5042
GLUCONSUPER-PWY (D-gluconate degradation)2291290.5008
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391610.5004
PWY-5386 (methylglyoxal degradation I)3051520.5002
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831120.4943
PWY-5913 (TCA cycle variation IV)3011500.4938
GALACTITOLCAT-PWY (galactitol degradation)73630.4849
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491330.4824
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491330.4824
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911120.4713
LIPASYN-PWY (phospholipases)2121190.4685
GLUCARDEG-PWY (D-glucarate degradation I)152950.4520
KDOSYN-PWY (KDO transfer to lipid IVA I)1801040.4394
PWY-5148 (acyl-CoA hydrolysis)2271200.4383
TYRFUMCAT-PWY (tyrosine degradation I)1841050.4359
PWY0-981 (taurine degradation IV)106740.4347
PWY0-1182 (trehalose degradation II (trehalase))70570.4345
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791030.4344
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551280.4319
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981650.4287
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291480.4249
DAPLYSINESYN-PWY (lysine biosynthesis I)3421510.4224
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50450.4177
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116760.4130
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96670.4096
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135830.4064
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91640.4019



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11265   EG11143   EG10946   EG10900   EG10707   EG10441   EG10423   EG10073   
EG126910.9995820.9989350.999180.9995930.9986140.9996270.999140.999305
EG112650.9991710.9995710.9999550.9993190.9998710.999150.999772
EG111430.9993460.9991240.9988280.9990610.9996330.999007
EG109460.9995490.9995080.9995180.9996340.999632
EG109000.9992530.9999230.9991410.999746
EG107070.9990530.9990890.999422
EG104410.999050.999681
EG104230.999053
EG10073



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PAIRWISE BLAST SCORES:

  EG12691   EG11265   EG11143   EG10946   EG10900   EG10707   EG10441   EG10423   EG10073   
EG126910.0f0--------
EG11265-0.0f0-------
EG11143--0.0f0------
EG10946---0.0f0-----
EG10900----0.0f0----
EG10707-----0.0f0---
EG10441------0.0f0--
EG10423-------0.0f0-
EG10073--------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- COMPLETE-ARO-PWY (superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis) (degree of match pw to cand: 0.095, degree of match cand to pw: 0.222, average score: 0.694)
  Genes in pathway or complex:
             0.6360 0.0033 EG11234 (ydiB) EG11234-MONOMER (YdiB)
             0.6522 0.3282 EG10078 (aroF) AROF-MONOMER (AroF)
             0.8448 0.5944 EG10080 (aroH) AROH-MONOMER (AroH)
             0.7584 0.4129 EG10079 (aroG) AROG-MONOMER (AroG)
             0.5298 0.0006 EG10074 (aroB) AROB-MONOMER (3-dehydroquinate synthase)
             0.7338 0.3910 EG10076 (aroD) AROD-MONOMER (AroD)
             0.2938 0.0007 EG10077 (aroE) AROE-MONOMER (shikimate dehydrogenase)
             0.3711 0.0001 EG10081 (aroK) AROK-MONOMER (shikimate kinase I)
             0.4231 0.0001 EG10082 (aroL) AROL-MONOMER (shikimate kinase II)
   *in cand* 0.9995 0.9990 EG10073 (aroA) AROA-MONOMER (3-phosphoshikimate-1-carboxyvinyltransferase)
             0.9656 0.8947 EG10075 (aroC) AROC-MONOMER (AroC)
             0.8616 0.2752 EG11025 (trpB) TRYPSYN-BPROTEIN (tryptophan synthase, β subunit)
             0.9192 0.4933 EG11024 (trpA) TRYPSYN-APROTEIN (tryptophan synthase, α subunit)
             0.6609 0.2924 EG11028 (trpE) ANTHRANSYNCOMPI-MONOMER (anthranilate synthase component I)
             0.6112 0.1643 EG11027 (trpD) ANTHRANSYNCOMPII-MONOMER (anthranilate synthase component II)
             0.6837 0.2254 EG11026 (trpC) PRAI-IGPS (indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase)
             0.3093 0.1045 EG10497 (ilvE) BRANCHED-CHAINAMINOTRANSFER-MONOMER (IlvE)
             0.9746 0.9090 EG11039 (tyrA) CHORISMUTPREPHENDEHYDROG-MONOMER (TyrA)
   *in cand* 0.9992 0.9986 EG10707 (pheA) CHORISMUTPREPHENDEHYDRAT-MONOMER (PheA)
             0.9702 0.8884 EG10096 (aspC) ASPAMINOTRANS-MONOMER (AspC)
             0.7553 0.5852 EG11040 (tyrB) TYRB-MONOMER (TyrB)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9990 EG10423 (gyrA) EG10423-MONOMER (DNA gyrase, subunit A)
   *in cand* 0.9995 0.9990 EG10441 (ihfB) PD00348 (integration host factor (IHF), β subunit)
   *in cand* 0.9996 0.9991 EG10900 (rpsA) EG10900-MONOMER (30S ribosomal subunit protein S1)
   *in cand* 0.9995 0.9992 EG10946 (serC) PSERTRANSAM-MONOMER (SerC)
   *in cand* 0.9992 0.9988 EG11143 (ubiG) DHHB-METHYLTRANSFER-MONOMER (UbiG)
   *in cand* 0.9996 0.9991 EG11265 (cmk) CMPKI-MONOMER (cytidylate kinase)
   *in cand* 0.9993 0.9986 EG12691 (yciM) EG12691-MONOMER (conserved protein)

- ALL-CHORISMATE-PWY (superpathway of chorismate) (degree of match pw to cand: 0.053, degree of match cand to pw: 0.333, average score: 0.580)
  Genes in pathway or complex:
             0.8083 0.5311 EG10799 (purN) GART-MONOMER (phosphoribosylglycinamide formyltransferase 1)
             0.7834 0.4817 EG11375 (folE) GTP-CYCLOHYDRO-I-MONOMER (GTP cyclohydrolase I monomer)
             0.5010 0.1526 EG11138 (nudB) H2NEOPTERINP3PYROPHOSPHOHYDRO-MONOMER (dihydroneopterin triphosphate pyrophosphohydrolase)
             0.1476 0.0324 EG11673 (folB) H2NEOPTERINALDOL-MONOMER (FolB)
             0.3010 0.1006 EG11374 (folK) H2PTERIDINEPYROPHOSPHOKIN-MONOMER (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase)
             0.4694 0.2162 G6862 (folM) G6862-MONOMER (dihydromonapterin reductase / dihydrofolate reductase)
             0.5922 0.1598 EG10326 (folA) DIHYDROFOLATEREDUCT-MONOMER (dihydrofolate reductase)
             0.9275 0.7189 EG10327 (folC) FOLC-MONOMER (bifunctional folypolyglutamate synthetase / dihydrofolate synthetase)
             0.8717 0.2343 EG10328 (folD) FOLD-MONOMER (FolD)
             0.1402 0.0017 EG10682 (pabA) PABASYN-COMPII-MONOMER (PabA)
             0.8554 0.5895 EG10683 (pabB) PABASYN-COMPI-MONOMER (PabB)
             0.2080 0.0017 EG50011 (folP) H2PTEROATESYNTH-MONOMER (FolP)
             0.9493 0.7774 EG11493 (pabC) ADCLY-MONOMER (pabC)
             0.0297 0.0260 EG11369 (ubiC) CHORPYRLY-MONOMER (chorismate lyase)
             0.0710 0.0002 EG11370 (ubiA) 4OHBENZOATE-OCTAPRENYLTRANSFER-MONOMER (4-hydroxybenzoate octaprenyltransferase)
             0.5222 0.0978 EG11044 (ubiX) UBIX-MONOMER (3-octaprenyl-4-hydroxybenzoate decarboxylase together with UbiG)
             0.1588 0.0008 EG11396 (ubiD) EG11396-MONOMER (3-octaprenyl-4-hydroxybenzoate carboxy-lyase monomer)
             0.3284 0.0004 EG11476 (ubiB) 2-OCTAPRENYLPHENOL-HYDROX-MONOMER (2-octaprenylphenol hydroxylase)
   *in cand* 0.9992 0.9988 EG11143 (ubiG) DHHB-METHYLTRANSFER-MONOMER (UbiG)
             0.3333 0.0039 EG11324 (ubiH) OCTAPRENYL-METHOXYPHENOL-OH-MONOMER (2-octaprenyl-6-methoxyphenol hydroxylase)
             0.4725 0.0036 G6365 (ubiF) OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON (2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase)
             0.7553 0.5852 EG11040 (tyrB) TYRB-MONOMER (TyrB)
             0.9702 0.8884 EG10096 (aspC) ASPAMINOTRANS-MONOMER (AspC)
   *in cand* 0.9992 0.9986 EG10707 (pheA) CHORISMUTPREPHENDEHYDRAT-MONOMER (PheA)
             0.9746 0.9090 EG11039 (tyrA) CHORISMUTPREPHENDEHYDROG-MONOMER (TyrA)
             0.3093 0.1045 EG10497 (ilvE) BRANCHED-CHAINAMINOTRANSFER-MONOMER (IlvE)
             0.6837 0.2254 EG11026 (trpC) PRAI-IGPS (indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase)
             0.6112 0.1643 EG11027 (trpD) ANTHRANSYNCOMPII-MONOMER (anthranilate synthase component II)
             0.6609 0.2924 EG11028 (trpE) ANTHRANSYNCOMPI-MONOMER (anthranilate synthase component I)
             0.9192 0.4933 EG11024 (trpA) TRYPSYN-APROTEIN (tryptophan synthase, α subunit)
             0.8616 0.2752 EG11025 (trpB) TRYPSYN-BPROTEIN (tryptophan synthase, β subunit)
             0.9656 0.8947 EG10075 (aroC) AROC-MONOMER (AroC)
   *in cand* 0.9995 0.9990 EG10073 (aroA) AROA-MONOMER (3-phosphoshikimate-1-carboxyvinyltransferase)
             0.4231 0.0001 EG10082 (aroL) AROL-MONOMER (shikimate kinase II)
             0.3711 0.0001 EG10081 (aroK) AROK-MONOMER (shikimate kinase I)
             0.2938 0.0007 EG10077 (aroE) AROE-MONOMER (shikimate dehydrogenase)
             0.7338 0.3910 EG10076 (aroD) AROD-MONOMER (AroD)
             0.5298 0.0006 EG10074 (aroB) AROB-MONOMER (3-dehydroquinate synthase)
             0.7584 0.4129 EG10079 (aroG) AROG-MONOMER (AroG)
             0.8448 0.5944 EG10080 (aroH) AROH-MONOMER (AroH)
             0.6522 0.3282 EG10078 (aroF) AROF-MONOMER (AroF)
             0.6360 0.0033 EG11234 (ydiB) EG11234-MONOMER (YdiB)
             0.5255 0.1587 EG10261 (entC) ENTC-MONOMER (isochorismate synthase 1)
             0.7054 0.2644 EG10259 (entA) ENTA-MONOMER (EntA)
             0.4820 0.1571 EG10263 (entE) ENTE-MONOMER (EntE)
             0.6612 0.2229 EG10264 (entF) ENTF-PANT (aryl carrier protein / serine activating enzyme)
             0.8866 0.6848 EG10262 (entD) ENTD-MONOMER (phosphopantetheinyl transferase)
             0.4701 0.2174 EG10260 (entB) ENTB-MONOMER (EntB)
             0.8076 0.3138 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
             0.6569 0.1265 EG11368 (menB) NAPHTHOATE-SYN-MONOMER (MenB)
             0.6557 0.3326 EG12438 (menH) EG12438-MONOMER ((1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase)
             0.5339 0.1195 EG10579 (menD) MEND-MONOMER (MenD)
             0.6617 0.2139 EG12362 (menF) MENF-MONOMER (MenF)
             0.6686 0.2475 EG11532 (menC) O-SUCCINYLBENZOATE-COA-SYN-MONOMER (o-succinylbenzoate synthase)
             0.5436 0.1180 EG12437 (menE) O-SUCCINYLBENZOATE-COA-LIG-MONOMER (MenE)
             0.1841 0.0644 EG11880 (menA) DMK-MONOMER (1,4-dihydroxy-2-naphthoate octaprenyltransferase)
             0.5542 0.0000 EG11473 (ubiE) 2-OCTAPRENYL-METHOXY-BENZOQ-METH-MONOMER (bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9990 EG10423 (gyrA) EG10423-MONOMER (DNA gyrase, subunit A)
   *in cand* 0.9995 0.9990 EG10441 (ihfB) PD00348 (integration host factor (IHF), β subunit)
   *in cand* 0.9996 0.9991 EG10900 (rpsA) EG10900-MONOMER (30S ribosomal subunit protein S1)
   *in cand* 0.9995 0.9992 EG10946 (serC) PSERTRANSAM-MONOMER (SerC)
   *in cand* 0.9996 0.9991 EG11265 (cmk) CMPKI-MONOMER (cytidylate kinase)
   *in cand* 0.9993 0.9986 EG12691 (yciM) EG12691-MONOMER (conserved protein)
   This pathway has holes



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10073 EG10441 EG10900 EG10946 EG11265 (centered at EG11265)
EG10423 EG11143 (centered at EG11143)
EG10707 (centered at EG10707)
EG12691 (centered at EG12691)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12691   EG11265   EG11143   EG10946   EG10900   EG10707   EG10441   EG10423   EG10073   
171/623408/623328/623297/623414/623406/623324/623413/623415/623
AAEO224324:0:Tyes0922---67--484
AAUR290340:2:Tyes----01531--557
AAVE397945:0:Tyes1060374826
ABAC204669:0:Tyes02320276-37781135321538932716
ABAU360910:0:Tyes12803941027
ABOR393595:0:Tyes0411837295
ABUT367737:0:Tyes----260348-0-
ACAU438753:0:Tyes--4218-3624036212219-
ACEL351607:0:Tyes-1116-0971---418
ACRY349163:8:Tyes--979-7266111692-0
ADEH290397:0:Tyes13471339-246113441611-41980
AEHR187272:0:Tyes242001421162213-
AFER243159:0:Tyes8698730880872878870881874
AFUL224325:0:Tyes-----0--1253
AHYD196024:0:Tyes713709122187571007111220876
ALAI441768:0:Tyes--------0
AMAR234826:0:Tyes--0-254----
AMAR329726:9:Tyes--3146--0---
AMET293826:0:Tyes-25751699-2572640-0639
ANAE240017:0:Tyes--29613680----
AORE350688:0:Tyes-1561--1558--01357
APER272557:0:Tyes--------0
APHA212042:0:Tyes--318-0----
APLE416269:0:Tyes44745104124507454491409
APLE434271:0:Tno41642003834197294181380
ASAL382245:5:Tyes401789011412217991
ASP1667:3:Tyes--294-01470--601
ASP232721:2:Tyes1060374826
ASP62928:0:Tyes951549162705
ASP62977:0:Tyes-2157024352156204821552440-
ASP76114:2:Tyes0411736284
AVAR240292:3:Tyes-0---323--1300
AYEL322098:4:Tyes-0-------
BABO262698:1:Tno----091131015-
BAMB339670:3:Tno12804951027
BAMB398577:3:Tno12804951027
BAMY326423:0:Tyes-2093-1015-2483208402065
BANT260799:0:Tno-1474-3134-4376362502800
BANT261594:2:Tno-1395-3030-4293352202710
BANT568206:2:Tyes-2972-1214-453068701557
BANT592021:2:Tno-1456-3211-4522373402865
BAPH198804:0:Tyes---1211192001180120
BAPH372461:0:Tyes---757312772074
BBAC264462:0:Tyes-9733347-977-19420-
BBAC360095:0:Tyes-8670-868-933347-
BBRO257310:0:Tyes0411837295
BCAN483179:1:Tno--1819-0101241052-
BCEN331271:2:Tno12804951027
BCEN331272:3:Tyes12804951027
BCER226900:1:Tyes-1470-3184-4335364802880
BCER288681:0:Tno-1454-3033-4236354502737
BCER315749:1:Tyes-1160-1968-2990225901182
BCER405917:1:Tyes-153914853096-4286354402824
BCER572264:1:Tno-1397-3181-4353364002855
BCIC186490:0:Tyes-2-03--1291
BCLA66692:0:Tyes-1925-1579-1592298201255
BFRA272559:1:Tyes---13442852982-17710
BFRA295405:0:Tno---12903093244-16940
BHAL272558:0:Tyes-1709-1259-1286138002788
BHEN283166:0:Tyes--363-70206093572
BJAP224911:0:Fyes--0-53312245354512531
BLIC279010:0:Tyes-2360-104923592831234802329
BLON206672:0:Tyes----23---0
BMAL243160:1:Tno05128473106
BMAL320388:1:Tno05148473106
BMAL320389:1:Tyes149061071148
BMEL224914:1:Tno--0-176917591648720-
BMEL359391:1:Tno--1691-09114986-
BOVI236:1:Tyes--1589-011113933-
BPAR257311:0:Tno0411837295
BPER257313:0:Tyes1170384926
BPET94624:0:Tyes12803941027
BPSE272560:1:Tyes0411736295
BPSE320372:1:Tno0412736295
BPSE320373:1:Tno0413736295
BPUM315750:0:Tyes-2046-983-2448203402015
BQUI283165:0:Tyes--258-69-069071
BSP107806:2:Tyes---1271252061240126
BSP36773:2:Tyes12804951027
BSP376:0:Tyes-3447-2847036944
BSUB:0:Tyes-2458-1100-2972244602427
BSUI204722:1:Tyes--1781-0101201033-
BSUI470137:1:Tno--1630-0101201082-
BTHA271848:1:Tno1170485926
BTHE226186:0:Tyes---25735103097-01312
BTHU281309:1:Tno-1347-2980-4119342702652
BTHU412694:1:Tno-1342-2860-3882324002571
BTRI382640:1:Tyes--533-632160127761
BVIE269482:7:Tyes12804951027
BWEI315730:4:Tyes15331509-3014-4282350902789
CABO218497:0:Tyes-0--272---506
CACE272562:1:Tyes-------0919
CAULO:0:Tyes--0-279321312792--
CBEI290402:0:Tyes---68-44878404489
CBLO203907:0:Tyes-2012962032000-295202
CBLO291272:0:Tno-2033022052020-301204
CBOT36826:1:Tno-1767--1144-34910-
CBOT441770:0:Tyes-1658--1112-34450-
CBOT441771:0:Tno-1659--1117-33120-
CBOT441772:1:Tno-1689--1132-35180-
CBOT498213:1:Tno-1724--1153-35430-
CBOT508765:1:Tyes-----304613903048
CBOT515621:2:Tyes-1892--1122-36870-
CBOT536232:0:Tno-1841--1212-38000-
CBUR227377:1:Tyes1721690167170-1331166168
CBUR360115:1:Tno1801770175178-1389174176
CBUR434922:2:Tno12151218140512201217-012211219
CCAV227941:1:Tyes-0--290---542
CCHL340177:0:Tyes----489922750-
CCON360104:2:Tyes---32022---
CCUR360105:0:Tyes---106801078---
CDES477974:0:Tyes-11391420-11371866720-
CDIF272563:1:Tyes-1853---1874-01872
CDIP257309:0:Tyes-488--437---0
CEFF196164:0:Fyes-799-129693---0
CFEL264202:1:Tyes-557--259---0
CFET360106:0:Tyes---097415---
CGLU196627:0:Tyes-672-69603---0
CHOM360107:1:Tyes---7990806---
CHUT269798:0:Tyes----121547-9480
CHYD246194:0:Tyes-1673----02413-
CJAP155077:0:Tyes-14381448-14341444143314450
CJEI306537:0:Tyes-477-0414---1250
CJEJ192222:0:Tyes---105600---
CJEJ195099:0:Tno---105900---
CJEJ354242:2:Tyes---105370---
CJEJ360109:0:Tyes---6610675---
CJEJ407148:0:Tno---105580---
CKLU431943:1:Tyes-----7481330746
CKOR374847:0:Tyes-----88--0
CMAQ397948:0:Tyes-----0--506
CMET456442:0:Tyes-----0--1
CMIC31964:2:Tyes---7220---78
CMIC443906:2:Tyes---1178447---0
CMUR243161:1:Tyes-360--0---268
CNOV386415:0:Tyes-1047--335-021711969
CPEL335992:0:Tyes--23-014---
CPER195102:1:Tyes-1119----25850731
CPER195103:0:Tno-1306----26880660
CPER289380:3:Tyes-1112----23780654
CPHY357809:0:Tyes-109118322017-0---
CPNE115711:1:Tyes-0--259---623
CPNE115713:0:Tno-249--0---741
CPNE138677:0:Tno-253--0---745
CPNE182082:0:Tno-265--0---778
CPRO264201:0:Fyes-0--458---582
CPSY167879:0:Tyes109510911087108910920109310881090
CRUT413404:0:Tyes-272286306271304-0-
CSAL290398:0:Tyes3083180321317320306322319
CSP501479:6:Fyes-----0---
CSP501479:7:Fyes--0------
CSP501479:8:Fyes-5--2-0--
CSP78:2:Tyes-0844-1-2--
CSUL444179:0:Tyes----0189--193
CTEP194439:0:Tyes1466---14615031530-
CTET212717:0:Tyes-------0-
CTRA471472:0:Tyes----0---270
CTRA471473:0:Tno----0---270
CVES412965:0:Tyes-2482612802472782460-
CVIO243365:0:Tyes205320570130220561357205512992058
DARO159087:0:Tyes52480449550348
DDES207559:0:Tyes2001---5073537182203536
DETH243164:0:Tyes-----0-11182
DGEO319795:1:Tyes----571329-150
DHAF138119:0:Tyes-2297-4734-1927-02302
DNOD246195:0:Tyes44214175482-32040
DOLE96561:0:Tyes11051315-257513141283256101282
DPSY177439:2:Tyes---1334267157418602432
DRAD243230:3:Tyes--1435-86751--0
DRED349161:0:Tyes-11711275-117380611901170
DSHI398580:5:Tyes-3742923-3760378-373
DSP216389:0:Tyes--814--0--2
DSP255470:0:Tno--831--0--2
DVUL882:1:Tyes16391020--313045718520458
ECAN269484:0:Tyes--0-214----
ECAR218491:0:Tyes76213970139913962174139511398
ECHA205920:0:Tyes--225-0----
ECOL199310:0:Tno68131688042030516871
ECOL316407:0:Tno38231343041704513421
ECOL331111:6:Tno45931468041807514671
ECOL362663:0:Tno41531351041679513501
ECOL364106:1:Tno57331534041950515331
ECOL405955:2:Tyes41931327041723-13261
ECOL409438:6:Tyes36831543041944515421
ECOL413997:0:Tno34331237041574512361
ECOL439855:4:Tno0357527361356882355523360
ECOL469008:0:Tno1235158034915831579015783501582
ECOL481805:0:Tno1253159634215991595015943431598
ECOL585034:0:Tno35441346051750613451
ECOL585035:0:Tno47231384041775513831
ECOL585055:0:Tno49431514041918515131
ECOL585056:2:Tno48331471041828514701
ECOL585057:0:Tno05937275975921159591723596
ECOL585397:0:Tno54131697042037516961
ECOL83334:0:Tno87732165042523521641
ECOLI:0:Tno38631366041749513651
ECOO157:0:Tno115532067042426520661
EFAE226185:3:Tyes-1452----145501471
EFER585054:1:Tyes11875734575715740575458572
ELIT314225:0:Tyes--1422-05631005--
ERUM254945:0:Tyes--0-224----
ERUM302409:0:Tno--0-221----
ESP42895:1:Tyes76221375031659413741
FALN326424:0:Tyes-2073617016134678--5747
FJOH376686:0:Tyes-2279-198322859-21050
FMAG334413:1:Tyes-2--0----
FNOD381764:0:Tyes-1157-0-----
FNUC190304:0:Tyes----0--3441281
FPHI484022:1:Tyes-176938317685480-10991438
FRANT:0:Tno-35113153520365-1304377
FSP106370:0:Tyes-138527709822864--3686
FSP1855:0:Tyes-40243377617844631023--0
FSUC59374:0:Tyes-108409111083959--1982
FTUL351581:0:Tno-4159684161213695-0272
FTUL393011:0:Tno-3798623801077637-0257
FTUL393115:0:Tyes-34412903450358-1279370
FTUL401614:0:Tyes-7901607890584-1313923
FTUL418136:0:Tno-58205811331945-32718
FTUL458234:0:Tno-4038924041112649-0273
GBET391165:0:Tyes-14250-142313951421-1426
GFOR411154:0:Tyes-1512-113015090-116411
GKAU235909:1:Tyes-2317-718--230502286
GMET269799:1:Tyes1504860716-8628578630859
GOXY290633:5:Tyes--0-5532495--
GSUL243231:0:Tyes-2588--25862591258502589
GTHE420246:1:Tyes-2119-548-2486210802089
GURA351605:0:Tyes-1460--14621457213301459
GVIO251221:0:Tyes--3828--0--520
HARS204773:0:Tyes04139382105
HAUR316274:2:Tyes--3801123303978--474
HCHE349521:0:Tyes62162506286241710623629-
HDUC233412:0:Tyes4194157604454160417758446
HHAL349124:0:Tyes041510382115
HHEP235279:0:Tyes----01406-1532-
HINF281310:0:Tyes559563-215620561519136
HINF374930:0:Tyes30-405-426140293
HINF71421:0:Tno7773-2274075118437
HMAR272569:8:Tyes--------0
HMOD498761:0:Tyes-830846938833826-0-
HMUK485914:1:Tyes-----0--1667
HNEP81032:0:Tyes--421-146302521-
HPY:0:Tno----0--303-
HPYL357544:1:Tyes----0----
HPYL85963:0:Tno----338--0-
HSAL478009:4:Tyes--------0
HSOM205914:1:Tyes6096137992486120611800250
HSOM228400:0:Tno8208249533378230822954339
HSP64091:2:Tno--------0
HWAL362976:1:Tyes--------0
IHOS453591:0:Tyes-----0--998
ILOI283942:0:Tyes04973-285
JSP290400:1:Tyes-4220-42836093324-415
JSP375286:0:Tyes04139382105
KPNE272620:2:Tyes049791636497749801934498116354978
KRAD266940:2:Fyes----2823---0
LACI272621:0:Tyes-957----9600-
LBIF355278:1:Tyes--0------
LBIF355278:2:Tyes-213-021221--215
LBIF456481:1:Tno--0------
LBIF456481:2:Tno-221-022021--223
LBOR355276:1:Tyes--698016081612---
LBOR355277:1:Tno--753161340---
LBRE387344:2:Tyes-740981-741-7430-
LCAS321967:1:Tyes-1329--1330--0-
LCHO395495:0:Tyes1060208174826
LDEL321956:0:Tyes------6850-
LDEL390333:0:Tyes-664----6670-
LGAS324831:0:Tyes-857----8600-
LHEL405566:0:Tyes-886-33--8890-
LINN272626:1:Tno-2083-3013-1575-02067
LINT189518:1:Tyes--23120900896---
LINT267671:1:Tno---020952098---
LINT363253:3:Tyes----0-139--
LJOH257314:0:Tyes-948----9510-
LLAC272622:5:Tyes-1168-02611210-564-
LLAC272623:0:Tyes-147403746091513-882-
LMES203120:1:Tyes-1212-1379---01084
LMON169963:0:Tno-1974-2891-1544-01958
LMON265669:0:Tyes-1942-2784-1534-01926
LPLA220668:0:Tyes-1601-1601600-159701733
LPNE272624:0:Tno6328214-153002
LPNE297245:1:Fno6328114-152002
LPNE297246:1:Fyes6328814-166102
LPNE400673:0:Tno6328814-239002
LREU557436:0:Tyes-794----7970-
LSAK314315:0:Tyes-1049----10460-
LSPH444177:1:Tyes-193017753575-383219390-
LWEL386043:0:Tyes-1958-2748-1542-01942
LXYL281090:0:Tyes---5510---662
MABS561007:1:Tyes-1452310601376---2632
MACE188937:0:Tyes--2256--1526-02885
MAEO419665:0:Tyes610----344--0
MAER449447:0:Tyes-3935---3390--0
MAQU351348:2:Tyes951457162704
MAVI243243:0:Tyes-30138309863101--04117
MBAR269797:1:Tyes1787-2725--1027-18710
MBOV233413:0:Tno-83--0---1618
MBOV410289:0:Tno-83--0---1693
MBUR259564:0:Tyes-----359-0609
MCAP243233:0:Tyes1331360142135140134143-
MEXT419610:0:Tyes--778-3161043971961
MFLA265072:0:Tyes04508619361826205
MGIL350054:3:Tyes-1789-01860---2997
MHUN323259:0:Tyes--0----826812
MJAN243232:2:Tyes-----141--0
MKAN190192:0:Tyes-----0--558
MLAB410358:0:Tyes--1258----01222
MLEP272631:0:Tyes-387-834392---0
MLOT266835:2:Tyes-34692090-3468371218950-
MMAG342108:0:Tyes-26510-265025562393770-
MMAR267377:0:Tyes-----329--0
MMAR368407:0:Tyes--0--68-17667
MMAR394221:0:Tyes-22159-112400--
MMAR402880:1:Tyes--556--0--337
MMAR426368:0:Tyes--1046--330--0
MMAR444158:0:Tyes-----0--332
MMAZ192952:0:Tyes-----0-2095884
MPET420662:1:Tyes1170485927
MSME246196:0:Tyes-3618055403708---1781
MSP164756:1:Tno-1573-31251651---0
MSP164757:0:Tno-1534-34491615---0
MSP189918:2:Tyes-1583-31841666---0
MSP266779:3:Tyes--1603-2212269722780-
MSP400668:0:Tyes8394794844824784818414830
MSP409:2:Tyes057744020-5313102218593726-
MSTA339860:0:Tyes-----919--0
MSUC221988:0:Tyes626630-7316298186280733
MTBCDC:0:Tno-87--0---1749
MTBRV:0:Tno-82--0---1614
MTHE187420:0:Tyes-----454--0
MTHE264732:0:Tyes-12961142-129412997601297
MTHE349307:0:Tyes-----0-44589
MTUB336982:0:Tno-81--0---1592
MTUB419947:0:Tyes-85--0---1685
MVAN350058:0:Tyes-1492229032471576---0
MXAN246197:0:Tyes-3152116240312914236226350-
NARO279238:0:Tyes--3188-116930601774-
NEUR228410:0:Tyes-16572250116563165501658
NEUT335283:2:Tyes-12068115721155311580
NFAR247156:2:Tyes-204929476671931--04646
NGON242231:0:Tyes956213446061817026267
NHAM323097:2:Tyes-99404-9830001635-
NMEN122586:0:Tno09291633125693010593110101055
NMEN122587:0:Tyes165010170139910181547101911011147
NMEN272831:0:Tno50906702661396277108
NMEN374833:0:Tno161110290135310301506103111131156
NMUL323848:3:Tyes-2116120112201193
NOCE323261:1:Tyes14820821931006
NPHA348780:2:Tyes-----0--1497
NSEN222891:0:Tyes--212-0----
NSP103690:6:Tyes-29530--4365--5059
NSP35761:1:Tyes----28170--1521
NSP387092:0:Tyes0-860-471184-290-
NWIN323098:0:Tyes--329-15123201768-
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