CANDIDATE ID: 192

CANDIDATE ID: 192

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9912072e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12314 (yacG) (b0101)
   Products of gene:
     - EG12314-MONOMER (DNA gyrase inhibitor YacG)

- EG12313 (yacF) (b0102)
   Products of gene:
     - EG12313-MONOMER (conserved protein)

- EG12312 (coaE) (b0103)
   Products of gene:
     - EG12312-MONOMER (dephospho-CoA kinase)
       Reactions:
        dephospho-CoA + ATP  ->  ADP + coenzyme A + 2 H+
         In pathways
         PANTOSYN-PWY (pantothenate and coenzyme A biosynthesis I)
         PWY-4221 (PWY-4221)
         PWY-4242 (PWY-4242)
         COA-PWY (coenzyme A biosynthesis)

- EG12107 (ppdD) (b0108)
   Products of gene:
     - EG12107-MONOMER (prepilin peptidase dependent protein)

- EG12106 (hofB) (b0107)
   Products of gene:
     - EG12106-MONOMER (protein involved in plasmid replication)

- EG11798 (hofC) (b0106)
   Products of gene:
     - EG11798-MONOMER (protein transport protein HofC)

- EG11546 (nadC) (b0109)
   Products of gene:
     - QUINOPRIBOTRANS-MONOMER (quinolinate phosphoribosyltransferase (decarboxylating) monomer)
     - QUINOPRIBOTRANS-CPLX (quinolinate phosphoribosyltransferase)
       Reactions:
        5-phospho-alpha-D-ribose 1-diphosphate + quinolinate + 2 H+  ->  CO2 + diphosphate + nicotinate mononucleotide
         In pathways
         PWY0-781 (aspartate superpathway)
         PWY-3502 (PWY-3502)
         NADSYN-PWY (NADSYN-PWY)
         PYRIDNUCSYN-PWY (NAD biosynthesis I (from aspartate))
         PWY-5653 (PWY-5653)

- EG10042 (ampE) (b0111)
   Products of gene:
     - EG10042-MONOMER (predicted inner membrane protein)

- EG10041 (ampD) (b0110)
   Products of gene:
     - EG10041-MONOMER (N-acetyl-anhydromuramyl-L-alanine-amidase)
       Reactions:
        GlcNAc-1,6-anhMurNAc-L-Ala-gamma-D-Glu-DAP-D-Ala + H2O  ->  glcNAc-1,6-anhMurNAc + L-Ala-gamma-D-Glu-DAP-D-Ala
        a peptidoglycan + H2O  =  N-acetylmuramate + a peptide



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 82
Effective number of orgs (counting one per cluster within 468 clusters): 46

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317589
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329539
YPES386656 ncbi Yersinia pestis Pestoides F9
YPES377628 ncbi Yersinia pestis Nepal5169
YPES360102 ncbi Yersinia pestis Antiqua9
YPES349746 ncbi Yersinia pestis Angola9
YPES214092 ncbi Yersinia pestis CO929
YPES187410 ncbi Yersinia pestis KIM 109
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80819
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VFIS312309 ncbi Vibrio fischeri ES1148
VCHO345073 ncbi Vibrio cholerae O3958
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169618
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT29
SSP94122 ncbi Shewanella sp. ANA-38
SSON300269 ncbi Shigella sonnei Ss0468
SSED425104 ncbi Shewanella sediminis HAW-EB39
SPRO399741 ncbi Serratia proteamaculans 5689
SPEA398579 ncbi Shewanella pealeana ATCC 7003458
SLOI323850 ncbi Shewanella loihica PV-48
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SHAL458817 ncbi Shewanella halifaxensis HAW-EB49
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4769
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B679
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91509
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT189
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty29
SDYS300267 ncbi Shigella dysenteriae Sd1979
SDEN318161 ncbi Shewanella denitrificans OS2178
SBAL402882 ncbi Shewanella baltica OS1858
SBAL399599 ncbi Shewanella baltica OS1958
RFER338969 ncbi Rhodoferax ferrireducens T1188
REUT381666 ncbi Ralstonia eutropha H168
REUT264198 ncbi Ralstonia eutropha JMP1348
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30008
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a8
PSP296591 ncbi Polaromonas sp. JS6668
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO19
PING357804 ncbi Psychromonas ingrahamii 378
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1258
PATL342610 ncbi Pseudoalteromonas atlantica T6c9
MPET420662 ncbi Methylibium petroleiphilum PM18
MCAP243233 ncbi Methylococcus capsulatus Bath8
LCHO395495 ncbi Leptothrix cholodnii SP-68
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785789
JSP375286 ncbi Janthinobacterium sp. Marseille8
ILOI283942 ncbi Idiomarina loihiensis L2TR9
HARS204773 ncbi Herminiimonas arsenicoxydans8
ESP42895 Enterobacter sp.9
EFER585054 ncbi Escherichia fergusonii ATCC 354699
ECOO157 ncbi Escherichia coli O157:H7 EDL9339
ECOL83334 Escherichia coli O157:H79
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S889
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL469008 ncbi Escherichia coli BL21(DE3)9
ECOL439855 ncbi Escherichia coli SMS-3-59
ECOL413997 ncbi Escherichia coli B str. REL6069
ECOL409438 ncbi Escherichia coli SE119
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI899
ECOL362663 ncbi Escherichia coli 5369
ECOL331111 ncbi Escherichia coli E24377A9
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
ECOL199310 ncbi Escherichia coli CFT0739
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10439
CVIO243365 ncbi Chromobacterium violaceum ATCC 124728
CPSY167879 ncbi Colwellia psychrerythraea 34H9
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1118
CBUR360115 ncbi Coxiella burnetii RSA 3318
CBUR227377 ncbi Coxiella burnetii RSA 4938
BVIE269482 ncbi Burkholderia vietnamiensis G48
BMAL243160 ncbi Burkholderia mallei ATCC 233448
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4498
AHYD196024 Aeromonas hydrophila dhakensis8
AAVE397945 ncbi Acidovorax citrulli AAC00-18


Names of the homologs of the genes in the group in each of these orgs
  EG12314   EG12313   EG12312   EG12107   EG12106   EG11798   EG11546   EG10042   EG10041   
YPSE349747 YPSIP31758_3376YPSIP31758_3375YPSIP31758_3374YPSIP31758_3370YPSIP31758_3371YPSIP31758_3372YPSIP31758_3369YPSIP31758_3367YPSIP31758_3368
YPSE273123 YPTB0700YPTB0701YPTB0702YPTB0707YPTB0706YPTB0705YPTB0708YPTB0710YPTB0709
YPES386656 YPDSF_2923YPDSF_2924YPDSF_2925YPDSF_2929YPDSF_2928YPDSF_2927YPDSF_2930YPDSF_2932YPDSF_2931
YPES377628 YPN_0657YPN_0658YPN_0659YPN_0663YPN_0662YPN_0661YPN_0664YPN_0666YPN_0665
YPES360102 YPA_2933YPA_2932YPA_2931YPA_2927YPA_2928YPA_2929YPA_2926YPA_2924YPA_2925
YPES349746 YPANGOLA_A1047YPANGOLA_A1046YPANGOLA_A1045YPANGOLA_A1041YPANGOLA_A1042YPANGOLA_A1043YPANGOLA_A1040YPANGOLA_A1038YPANGOLA_A1039
YPES214092 YPO3432YPO3431YPO3430YPO3425YPO3426YPO3427YPO3424YPO3422YPO3423
YPES187410 Y0755Y0756Y0757Y0761Y0760Y0759Y0762Y0764Y0763
YENT393305 YE0683YE0684YE0685YE0690YE0689YE0688YE0691YE0693YE0692
VPAR223926 VP2529VP2528VP2527VP2523VP2524VP2525VP2522VP2521
VFIS312309 VF2191VF2190VF2189VF2185VF2186VF2187VF2184VF2183
VCHO345073 VC0395_A2006VC0395_A2005VC0395_A2003VC0395_A1999VC0395_A2000VC0395_A2001VC0395_A1998VC0395_A1997
VCHO VC2429VC2428VC2427VC2423VC2424VC2425VC2422VC2421
STYP99287 STM0138STM0139STM0140STM0144STM0143STM0142STM0145STM0147STM0146
SSP94122 SHEWANA3_0414SHEWANA3_0415SHEWANA3_0416SHEWANA3_0419SHEWANA3_0418SHEWANA3_0422SHEWANA3_0424SHEWANA3_0423
SSON300269 SSO_0109SSO_0110SSO_0111SSO_0116SSO_0114SSO_0117SSO_0119SSO_0118
SSED425104 SSED_0420SSED_0421SSED_0422SSED_0426SSED_0425SSED_0424SSED_0427SSED_0429SSED_0428
SPRO399741 SPRO_0772SPRO_0773SPRO_0774SPRO_0778SPRO_0777SPRO_0776SPRO_0779SPRO_0780SPRO_1659
SPEA398579 SPEA_0408SPEA_0409SPEA_0410SPEA_0413SPEA_0412SPEA_0415SPEA_0417SPEA_0416
SLOI323850 SHEW_3443SHEW_3442SHEW_3441SHEW_3438SHEW_3439SHEW_3435SHEW_3433SHEW_3434
SHIGELLA YACGYACFYACEPPDDHOFCNADCAMPEAMPD
SHAL458817 SHAL_0465SHAL_0466SHAL_0467SHAL_0471SHAL_0470SHAL_0469SHAL_0472SHAL_0474SHAL_0473
SFLE373384 SFV_0093SFV_0094SFV_0095SFV_0099SFV_0097SFV_0100SFV_0102SFV_0101
SFLE198214 AAN41763.1AAN41764.1AAN41765.1AAN41769.1AAN41768.1AAN41770.1AAN41772.1AAN41771.1
SENT454169 SEHA_C0151SEHA_C0152SEHA_C0154SEHA_C0158SEHA_C0157SEHA_C0156SEHA_C0159SEHA_C0161SEHA_C0160
SENT321314 SCH_0137SCH_0138SCH_0139SCH_0143SCH_0142SCH_0141SCH_0144SCH_0146SCH_0145
SENT295319 SPA0142SPA0143SPA0144SPA0148SPA0147SPA0146SPA0149SPA0151SPA0150
SENT220341 STY0160STY0161STY0162STY0166STY0165STY0164STY0167STY0169STY0168
SENT209261 T0144T0145T0146T0150T0149T0148T0151T0153T0152
SDYS300267 SDY_0131SDY_0132SDY_0133SDY_0138SDY_0137SDY_3095SDY_0139SDY_0141SDY_0140
SDEN318161 SDEN_3394SDEN_3393SDEN_3392SDEN_3389SDEN_3390SDEN_3387SDEN_3385SDEN_3386
SBAL402882 SHEW185_3947SHEW185_3946SHEW185_3945SHEW185_3942SHEW185_3943SHEW185_3939SHEW185_3936SHEW185_3937
SBAL399599 SBAL195_4065SBAL195_4064SBAL195_4063SBAL195_4060SBAL195_4061SBAL195_4058SBAL195_4056SBAL195_4057
RFER338969 RFER_2907RFER_2906RFER_2905RFER_1265RFER_2902RFER_2903RFER_1318RFER_3346
REUT381666 H16_A3259H16_A3258H16_A0550H16_A3544H16_A3256H16_A3037H16_A2713H16_A3236
REUT264198 REUT_A2965REUT_A2964REUT_A2963REUT_A0533REUT_A3230REUT_A2961REUT_A2736REUT_A2942
PSYR223283 PSPTO_0922PSPTO_0923PSPTO_0927PSPTO_0926PSPTO_0925PSPTO_0948PSPTO_0951PSPTO_0950
PSYR205918 PSYR_0794PSYR_0795PSYR_0799PSYR_0798PSYR_0797PSYR_0815PSYR_0818PSYR_0817
PSP296591 BPRO_0846BPRO_0845BPRO_0844BPRO_4674BPRO_0841BPRO_0842BPRO_0902BPRO_1109
PLUM243265 PLU3643PLU3642PLU3641PLU3638PLU3639PLU3640PLU3637PLU3636PLU2790
PING357804 PING_1161PING_1160PING_1159PING_0478PING_0480PING_0481PING_1158PING_2940
PHAL326442 PSHAA0377PSHAA0379PSHAA0384PSHAA0378PSHAA0381PSHAA0386PSHAA0389PSHAA0388
PATL342610 PATL_3339PATL_3340PATL_3341PATL_3344PATL_0232PATL_3343PATL_3345PATL_3348PATL_3347
MPET420662 MPE_A0504MPE_A0505MPE_A0506MPE_A0065MPE_A0509MPE_A0508MPE_A1553MPE_A3215
MCAP243233 MCA_2090MCA_2091MCA_2093MCA_1510MCA_2096MCA_2095MCA_3101MCA_3052
LCHO395495 LCHO_0545LCHO_0546LCHO_0547LCHO_0485LCHO_0550LCHO_3098LCHO_1909LCHO_0381
KPNE272620 GKPORF_B4384GKPORF_B4385GKPORF_B4386GKPORF_B4391GKPORF_B4390GKPORF_B4389GKPORF_B4392GKPORF_B4394GKPORF_B4393
JSP375286 MMA_3001MMA_3000MMA_2999MMA_2856MMA_2996MMA_2997MMA_1999MMA_2980
ILOI283942 IL0447IL0448IL0449IL0453IL2025IL2024IL0454IL0456IL0455
HARS204773 HEAR2794HEAR2793HEAR2792HEAR2619HEAR0759HEAR2790HEAR1090HEAR2771
ESP42895 ENT638_0646ENT638_0647ENT638_0648ENT638_0652ENT638_0651ENT638_0650ENT638_0653ENT638_0655ENT638_0654
EFER585054 EFER_0122EFER_0123EFER_0124EFER_0128EFER_0127EFER_0126EFER_0129EFER_0131EFER_0130
ECOO157 YACGYACFYACEPPDDHOFBHOFCNADCAMPEAMPD
ECOL83334 ECS0105ECS0106ECS0107ECS0112ECS0111ECS0110ECS0113ECS0115ECS0114
ECOL585397 ECED1_0101ECED1_0102ECED1_0106ECED1_0105ECED1_0104ECED1_0107ECED1_0109ECED1_0108
ECOL585057 ECIAI39_0103ECIAI39_0104ECIAI39_0108ECIAI39_0107ECIAI39_0106ECIAI39_0109ECIAI39_0111ECIAI39_0110
ECOL585056 ECUMN_0100ECUMN_0101ECUMN_0105ECUMN_0104ECUMN_0103ECUMN_0106ECUMN_0108ECUMN_0107
ECOL585055 EC55989_0096EC55989_0097EC55989_0101EC55989_0100EC55989_0099EC55989_0102EC55989_0104EC55989_0103
ECOL585035 ECS88_0104ECS88_0105ECS88_0106ECS88_0110ECS88_0109ECS88_0108ECS88_0111ECS88_0113ECS88_0112
ECOL585034 ECIAI1_0100ECIAI1_0101ECIAI1_0105ECIAI1_0104ECIAI1_0103ECIAI1_0106ECIAI1_0108ECIAI1_0107
ECOL481805 ECOLC_3557ECOLC_3556ECOLC_3555ECOLC_3551ECOLC_3552ECOLC_3553ECOLC_3550ECOLC_3548ECOLC_3549
ECOL469008 ECBD_3517ECBD_3516ECBD_3515ECBD_3511ECBD_3512ECBD_3513ECBD_3510ECBD_3508ECBD_3509
ECOL439855 ECSMS35_0105ECSMS35_0106ECSMS35_0107ECSMS35_0111ECSMS35_0110ECSMS35_0109ECSMS35_0112ECSMS35_0114ECSMS35_0113
ECOL413997 ECB_00101ECB_00102ECB_00103ECB_00107ECB_00106ECB_00105ECB_00108ECB_00110ECB_00109
ECOL409438 ECSE_0102ECSE_0103ECSE_0104ECSE_0108ECSE_0107ECSE_0106ECSE_0109ECSE_0111ECSE_0110
ECOL405955 APECO1_1886APECO1_1885APECO1_1881APECO1_1882APECO1_1883APECO1_1880APECO1_1878APECO1_1879
ECOL364106 UTI89_C0109UTI89_C0110UTI89_C0111UTI89_C0115UTI89_C0114UTI89_C0113UTI89_C0117UTI89_C0119UTI89_C0118
ECOL362663 ECP_0102ECP_0103ECP_0104ECP_0108ECP_0107ECP_0106ECP_0109ECP_0111ECP_0110
ECOL331111 ECE24377A_0103ECE24377A_0104ECE24377A_0105ECE24377A_0110ECE24377A_0109ECE24377A_3425ECE24377A_0111ECE24377A_0113ECE24377A_0112
ECOL316407 ECK0101:JW5008:B0101ECK0102:JW0099:B0102ECK0103:JW0100:B0103ECK0107:JW0104:B0108ECK0106:JW0103:B0107ECK0105:JW0102:B0106ECK0108:JW0105:B0109ECK0110:JW0107:B0111ECK0109:JW0106:B0110
ECOL199310 C0121C0122C0123C0127C0126C0125C0128C0130C0129
ECAR218491 ECA3804ECA3803ECA3802ECA3798ECA3799ECA3800ECA3797ECA3794ECA3795
CVIO243365 CV_3823CV_3824CV_3825CV_4209CV_3813CV_3827CV_1588CV_0566
CPSY167879 CPS_4452CPS_4451CPS_4450CPS_4444CPS_4447CPS_4448CPS_4813CPS_4810CPS_4811
CBUR434922 COXBU7E912_1956COXBU7E912_1954COXBU7E912_1950COXBU7E912_1951COXBU7E912_1952COXBU7E912_2010COXBU7E912_1615COXBU7E912_1701
CBUR360115 COXBURSA331_A0242COXBURSA331_A0244COXBURSA331_A0248COXBURSA331_A0247COXBURSA331_A0246COXBURSA331_A0184COXBURSA331_A0568COXBURSA331_A0488
CBUR227377 CBU_0150CBU_0152CBU_0156CBU_0155CBU_0154CBU_0098CBU_0460CBU_0379
BVIE269482 BCEP1808_0548BCEP1808_0549BCEP1808_0550BCEP1808_2156BCEP1808_0069BCEP1808_5248BCEP1808_2583BCEP1808_0569
BMAL243160 BMA_2536BMA_2535BMA_2534BMA_0278BMA_2785BMA_2784BMA_2235BMA_2511
ASAL382245 ASA_0408ASA_0409ASA_0410ASA_0414ASA_0413ASA_3777ASA_0415ASA_0417
AHYD196024 AHA_3874AHA_3873AHA_3872AHA_3868AHA_3869AHA_3870AHA_3867AHA_3865
AAVE397945 AAVE_3685AAVE_3684AAVE_3683AAVE_4679AAVE_3680AAVE_3681AAVE_3851AAVE_0865


Organism features enriched in list (features available for 79 out of the 82 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0003582392
Arrangment:Pairs 0.000118528112
Arrangment:Singles 0.007954948286
Disease:Bubonic_plague 5.230e-666
Disease:Dysentery 0.000213756
Disease:Gastroenteritis 0.0000549813
Disease:Urinary_tract_infection 0.008365834
Endospores:No 0.009419120211
GC_Content_Range4:0-40 1.299e-142213
GC_Content_Range4:40-60 7.697e-2067224
GC_Content_Range4:60-100 0.002270510145
GC_Content_Range7:30-40 2.196e-102166
GC_Content_Range7:40-50 0.000269128117
GC_Content_Range7:50-60 5.183e-1239107
GC_Content_Range7:60-70 0.006438910134
Genome_Size_Range5:2-4 3.605e-87197
Genome_Size_Range5:4-6 3.278e-2667184
Genome_Size_Range9:2-3 0.00003574120
Genome_Size_Range9:3-4 0.0024887377
Genome_Size_Range9:4-5 2.128e-113696
Genome_Size_Range9:5-6 6.907e-93188
Gram_Stain:Gram_Neg 1.228e-1474333
Habitat:Multiple 0.000453137178
Motility:No 3.083e-74151
Motility:Yes 1.662e-859267
Optimal_temp.:28-30 0.007274847
Oxygen_Req:Aerobic 5.474e-69185
Oxygen_Req:Anaerobic 0.00001412102
Oxygen_Req:Facultative 3.862e-2266201
Pathogenic_in:Human 0.000510042213
Pathogenic_in:No 3.025e-613226
Pathogenic_in:Rodent 0.007274847
Shape:Coccus 0.0002754282
Shape:Rod 3.625e-868347
Temp._range:Mesophilic 0.005015572473
Temp._range:Psychrophilic 0.002971259



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 228
Effective number of orgs (counting one per cluster within 468 clusters): 180

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TSP28240 Thermotoga sp.0
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138551
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis1
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170251
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU51
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT31
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM1
JSP290400 ncbi Jannaschia sp. CCS11
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GOXY290633 ncbi Gluconobacter oxydans 621H0
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293280
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BQUI283165 ncbi Bartonella quintana Toulouse0
BOVI236 Brucella ovis1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCAN483179 ncbi Brucella canis ATCC 233651
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40181


Names of the homologs of the genes in the group in each of these orgs
  EG12314   EG12313   EG12312   EG12107   EG12106   EG11798   EG11546   EG10042   EG10041   
ZMOB264203 ZMO1870
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TSP28240
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591 TLET_1052
TKOD69014 TK0218
TDEN326298 TMDEN_0668
TDEN243275
TACI273075
STOK273063 ST1198
STHE322159 STER_0670
STHE299768
STHE264199 STU0621
SSUI391296 SSU98_1408
SSUI391295 SSU05_1395
SSOL273057
SSAP342451 SSP1077
SRUB309807 SRU_1913
SMUT210007 SMU_1613C
SMAR399550
SHAE279808 SH1236
SGOR29390 SGO_0716
SEPI176280 SE_1365
SEPI176279 SERP1252
SAUR93062 SACOL1735
SAUR93061 SAOUHSC_01795
SAUR426430 NWMN_1581
SAUR418127 SAHV_1674
SAUR367830 SAUSA300_1634
SAUR359787 SAURJH1_1779
SAUR359786 SAURJH9_1745
SAUR282459 SAS1616
SAUR282458 SAR1767
SAUR273036 SAB1547C
SAUR196620 MW1631
SAUR158879 SA1511
SAUR158878 SAV1688
SAGA211110 GBS1553
SAGA208435 SAG_1488
SAGA205921 SAK_1518
SACI330779 SACI_0547
RTYP257363
RSPH349102 RSPH17025_2224
RSAL288705 RSAL33209_2296
RRIC452659 RRIOWA_1588
RRIC392021 A1G_07455
RPRO272947
RMAS416276 RMA_1348
RFEL315456 RF_1384
RCON272944 RC1358
RCAN293613 A1E_05615
RBEL391896
RBEL336407
RAKA293614 A1C_06790
PTOR263820
PRUM264731 GFRORF0740
PPEN278197
PMOB403833
PMAR59920 PMN2A_1555
PMAR167555 NATL1_02631
PMAR167540 PMM0188
PMAR167539 PRO_0213
PMAR146891 A9601_02061
PLUT319225 PLUT_0270
PISL384616
PINT246198 PIN_A1989
PHOR70601 PH0011
PGIN242619 PG_1577
PFUR186497
PDIS435591 BDI_2086
PAST100379
PARS340102
PAER178306
PACN267747 PPA0785
PABY272844 PAB2347
OTSU357244 OTBS_0048
NSEN222891
NPHA348780
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192 MK0446
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797 MBAR_A1867
MART243272
MAEO419665
MACE188937
LWEL386043 LWE1576
LSAK314315 LSA1404
LREU557436 LREU_1245
LPLA220668 LP_1510
LMES203120 LEUM_0529
LLAC272623 L59930
LLAC272622 LACR_0692
LJOH257314 LJ_1649
LINT363253 LI0360
LHEL405566 LHV_1615
LGAS324831 LGAS_1419
LDEL390333 LDB1510
LDEL321956 LBUL_1405
LCAS321967 LSEI_1707
LBRE387344 LVIS_1040
LBIF456481 LEPBI_I1450
LBIF355278 LBF_1397
LACI272621 LBA1548
JSP290400 JANN_1219
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMAR272569
HHEP235279 HH_1700
HBUT415426
HACI382638 HAC_0200
GOXY290633
FNOD381764 FNOD_0138
FMAG334413
ERUM302409 ERGA_CDS_00010
ERUM254945 ERWE_CDS_00010
EFAE226185 EF_0880
ECHA205920 ECH_0026
ECAN269484 ECAJ_0006
DSHI398580 DSHI_2783
DDES207559 DDE_1831
CTRA471473 CTLON_0828
CTRA471472 CTL0834
CTET212717 CTC_02101
CTEP194439 CT_1936
CSUL444179
CPRO264201 PC1897
CPNE182082 CPB0845
CPNE138677 CPJ0816
CPNE115713 CPN0816
CPNE115711 CP_1055
CPHY357809
CMUR243161 TC_0860
CMIC443906 CMM_1751
CMIC31964 CMS1995
CMET456442
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537 JK0825
CHOM360107 CHAB381_1052
CFEL264202 CF0067
CCUR360105 CCV52592_1964
CCON360104 CCC13826_1231
CCAV227941 CCA_00947
CBOT536232 CLM_1610
CBOT515621 CLJ_B1549
CBOT498213 CLD_3103
CBOT441772 CLI_1531
CBOT441771 CLC_1484
CBOT441770 CLB_1472
CBOT36826 CBO1447
CBLO291272 BPEN_153
CBLO203907
CABO218497 CAB916
BXEN266265 BXE_C0344
BTUR314724
BTRI382640 BT_1904
BTHE226186 BT_1560
BSUI470137 BSUIS_A1497
BSUI204722 BR_1444
BSP107806 BU203
BQUI283165
BOVI236 GBOORF1458
BMEL359391 BAB1_1462
BMEL224914 BMEI0565
BHER314723
BHEN283166 BH12510
BGAR290434
BFRA295405 BF1469
BFRA272559 BF1400
BCAN483179 BCAN_A1478
BBUR224326
BBAC360095 BARBAKC583_0904
BAPH372461
BAPH198804 BUSG197
BAFZ390236
BABO262698 BRUAB1_1439
AYEL322098
AURANTIMONAS
APHA212042 APH_0016
APER272557
ANAE240017 ANA_0691
AMAR234826 AM1297
ALAI441768
AFUL224325
ABUT367737 ABU_2036


Organism features enriched in list (features available for 214 out of the 228 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00001231517
Disease:Botulism 0.006467855
Disease:Brucellosis 0.006467855
Disease:None 0.00285551258
Disease:Pharyngitis 0.000303088
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00001381111
Disease:bronchitis_and_pneumonitis 0.000303088
Endospores:No 2.599e-14120211
Endospores:Yes 0.0000559753
GC_Content_Range4:0-40 2.439e-20130213
GC_Content_Range4:40-60 0.002965768224
GC_Content_Range4:60-100 2.939e-1516145
GC_Content_Range7:0-30 1.185e-103847
GC_Content_Range7:30-40 2.869e-992166
GC_Content_Range7:50-60 0.000038522107
GC_Content_Range7:60-70 1.357e-1414134
Genome_Size_Range5:0-2 3.285e-29115155
Genome_Size_Range5:4-6 2.160e-2515184
Genome_Size_Range5:6-10 6.837e-8247
Genome_Size_Range9:0-1 3.120e-112627
Genome_Size_Range9:1-2 7.487e-1889128
Genome_Size_Range9:2-3 0.000309160120
Genome_Size_Range9:4-5 7.880e-91296
Genome_Size_Range9:5-6 1.927e-15388
Genome_Size_Range9:6-8 3.304e-7138
Gram_Stain:Gram_Neg 1.015e-695333
Habitat:Host-associated 2.468e-6101206
Habitat:Multiple 0.000191047178
Habitat:Specialized 0.00499242853
Habitat:Terrestrial 0.0000787231
Motility:No 0.009253266151
Motility:Yes 1.203e-671267
Optimal_temp.:- 0.000072173257
Optimal_temp.:25-30 0.0089080219
Optimal_temp.:30-37 0.00032881418
Optimal_temp.:37 0.000033757106
Oxygen_Req:Aerobic 1.332e-643185
Oxygen_Req:Anaerobic 3.172e-862102
Pathogenic_in:Swine 0.006467855
Shape:Coccus 0.00002204782
Shape:Irregular_coccus 0.00001231517
Shape:Rod 8.536e-1485347
Shape:Sphere 0.00002001619
Shape:Spiral 0.00377922034
Temp._range:Hyperthermophilic 5.454e-72023
Temp._range:Mesophilic 0.0096116164473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120590.5202
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45340.5150
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50360.5141
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218800.5107
GALACTITOLCAT-PWY (galactitol degradation)73430.4929
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195730.4846
ECASYN-PWY (enterobacterial common antigen biosynthesis)191720.4825
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176670.4623
THREONINE-DEG2-PWY (threonine degradation II)214730.4482
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37270.4445
SORBDEG-PWY (sorbitol degradation II)53330.4429
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)249780.4384
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)249780.4384
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31240.4349
GLUCONSUPER-PWY (D-gluconate degradation)229740.4319
PWY-6196 (serine racemization)102470.4308
LACTOSEUTIL-PWY (lactose degradation II)53320.4259
PWY-46 (putrescine biosynthesis III)138550.4212
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91430.4170
GLYCOCAT-PWY (glycogen degradation I)246750.4140
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121500.4089
PWY-5148 (acyl-CoA hydrolysis)227710.4057
PWY-5918 (heme biosynthesis I)272780.4040
PWY-4041 (γ-glutamyl cycle)279790.4037
RHAMCAT-PWY (rhamnose degradation)91420.4036
PWY0-1182 (trehalose degradation II (trehalase))70360.4027
LIPASYN-PWY (phospholipases)212680.4018
FUC-RHAMCAT-PWY (superpathway of fucose and rhamnose degradation)19170.4003



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12313   EG12312   EG12107   EG12106   EG11798   EG11546   EG10042   EG10041   
EG123140.9996430.9997430.9990010.9992770.9995280.9990150.9987010.999007
EG123130.9997390.9987760.9992040.9993860.9989380.9986860.998925
EG123120.9991960.9993760.9996540.999140.9988060.998968
EG121070.9991450.9992940.9990730.9987540.999004
EG121060.9998090.9987150.998650.998719
EG117980.9988910.9987820.998996
EG115460.999210.999305
EG100420.99929
EG10041



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PAIRWISE BLAST SCORES:

  EG12314   EG12313   EG12312   EG12107   EG12106   EG11798   EG11546   EG10042   EG10041   
EG123140.0f0--------
EG12313-0.0f0-------
EG12312--0.0f0------
EG12107---0.0f0-----
EG12106----0.0f0----
EG11798-----0.0f0---
EG11546------0.0f0--
EG10042-------0.0f0-
EG10041--------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10041 EG10042 EG11546 EG11798 EG12106 EG12107 EG12312 EG12313 EG12314 (centered at EG12106)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12314   EG12313   EG12312   EG12107   EG12106   EG11798   EG11546   EG10042   EG10041   
154/623124/623414/623122/623237/623238/623407/62372/623254/623
AAEO224324:0:Tyes----869084--
AAUR290340:2:Tyes--0---446--
AAVE397945:0:Tyes2770276927683751276527662933-0
ABAC204669:0:Tyes2028-4327-127012680--
ABAU360910:0:Tyes-27182719--02614-114
ABOR393595:0:Tyes0-15437-10
ABUT367737:0:Tyes------0--
ACAU438753:0:Tyes------0-2116
ACEL351607:0:Tyes--875-160711040--
ACRY349163:8:Tyes------0-1355
ADEH290397:0:Tyes1249-2082-6101780--
AEHR187272:0:Tyes-1846184525184218431860-0
AFER243159:0:Tyes-22902291-22951538367-0
AHYD196024:0:Tyes9873452-0
AMAR234826:0:Tyes------0--
AMAR329726:9:Tyes--2323-202404161--
AMET293826:0:Tyes--3045-339633940--
ANAE240017:0:Tyes--0------
AORE350688:0:Tyes--0-430428---
APHA212042:0:Tyes------0--
APLE416269:0:Tyes559-560564563---0
APLE434271:0:Tno531-532536535---0
ASAL382245:5:Tyes0125432466-8
ASP1667:3:Tyes--0---501--
ASP232721:2:Tyes134135136-01382741-2875
ASP62928:0:Tyes012-255225531385-2668
ASP62977:0:Tyes333-27730472802790-1
ASP76114:2:Tyes-2363236409039022874-2253
AVAR240292:3:Tyes--0--922863--
BABO262698:1:Tno--------0
BAMB339670:3:Tno447448449-102577-468
BAMB398577:3:Tno453454455-102404-474
BAMY326423:0:Tyes--119---0--
BANT260799:0:Tno--155---0--
BANT261594:2:Tno--154---0--
BANT568206:2:Tyes--159---0--
BANT592021:2:Tno--157---0--
BAPH198804:0:Tyes--0------
BBAC264462:0:Tyes--1535-0851170--
BBAC360095:0:Tyes--------0
BBRO257310:0:Tyes-39703971---3823-0
BCAN483179:1:Tno--------0
BCEN331271:2:Tno818283-011911-102
BCEN331272:3:Tyes513514515-102441-533
BCER226900:1:Tyes--158---0--
BCER288681:0:Tno--153---0--
BCER315749:1:Tyes--121---0--
BCER405917:1:Tyes--190---0--
BCER572264:1:Tno--149---0--
BCIC186490:0:Tyes--1---0--
BCLA66692:0:Tyes--1176---0--
BFRA272559:1:Tyes------0--
BFRA295405:0:Tno------0--
BHAL272558:0:Tyes--1949---0--
BHEN283166:0:Tyes--------0
BJAP224911:0:Fyes--0---1917-6014
BLIC279010:0:Tyes--140---0--
BLON206672:0:Tyes--0---396--
BMAL243160:1:Tno2008200720060223622351726-1985
BMAL320388:1:Tno242322-301130102165-0
BMAL320389:1:Tyes112411251126-5515520-1148
BMEL224914:1:Tno--------0
BMEL359391:1:Tno--------0
BOVI236:1:Tyes--------0
BPAR257311:0:Tno-33113312---3196-0
BPER257313:0:Tyes-33873388---3300-0
BPET94624:0:Tyes-10-2351-94-3841
BPSE272560:1:Tyes-30223021-01908-3003
BPSE320372:1:Tno345134503449-01950-3428
BPSE320373:1:Tno337933783377-01937-3345
BPUM315750:0:Tyes--119---0--
BSP107806:2:Tyes--0------
BSP36773:1:Tyes-----0---
BSP36773:2:Tyes426427428-0-2648-447
BSP376:0:Tyes--0-5834-4106-5185
BSUB:0:Tyes--126---0--
BSUI204722:1:Tyes--------0
BSUI470137:1:Tno--------0
BTHA271848:1:Tno111211131114-01765-1132
BTHE226186:0:Tyes------0--
BTHU281309:1:Tno--149---0--
BTHU412694:1:Tno--147---0--
BTRI382640:1:Tyes--------0
BVIE269482:6:Tyes-----0---
BVIE269482:7:Tyes46846947020660-2486-489
BWEI315730:4:Tyes--141---0--
BXEN266265:0:Tyes--------0
CABO218497:0:Tyes----0----
CACE272562:1:Tyes--75---0--
CAULO:0:Tyes--0-1711722955-2600
CBEI290402:0:Tyes--8-335233510--
CBLO291272:0:Tno--0------
CBOT36826:1:Tno------0--
CBOT441770:0:Tyes------0--
CBOT441771:0:Tno------0--
CBOT441772:1:Tno------0--
CBOT498213:1:Tno------0--
CBOT508765:1:Tyes--0-654653---
CBOT515621:2:Tyes------0--
CBOT536232:0:Tno------0--
CBUR227377:1:Tyes-50525655540348270
CBUR360115:1:Tno-57596362610360282
CBUR434922:2:Tno-320318314315316372082
CCAV227941:1:Tyes----0----
CCHL340177:0:Tyes--736---0--
CCON360104:2:Tyes----0----
CCUR360105:0:Tyes----0----
CDES477974:0:Tyes--1251-8048060--
CDIF272563:1:Tyes--0---1262--
CDIP257309:0:Tyes--0---1090--
CEFF196164:0:Fyes--351---0--
CFEL264202:1:Tyes----0----
CFET360106:0:Tyes----188-0--
CGLU196627:0:Tyes--294---0--
CHOM360107:1:Tyes----0----
CHUT269798:0:Tyes--0---1267--
CHYD246194:0:Tyes--986-021687--
CJAP155077:0:Tyes79-78-6717670-0
CJEI306537:0:Tyes--0------
CKLU431943:1:Tyes--0---79--
CMIC31964:2:Tyes--0------
CMIC443906:2:Tyes--0------
CMUR243161:1:Tyes----0----
CNOV386415:0:Tyes--83-0-922--
CPEL335992:0:Tyes-----26595-0
CPER195102:1:Tyes----1940-0--
CPER195103:0:Tno----2121-0--
CPER289380:3:Tyes----1838-0--
CPNE115711:1:Tyes----0----
CPNE115713:0:Tno----0----
CPNE138677:0:Tno----0----
CPNE182082:0:Tno----0----
CPRO264201:0:Fyes----0----
CPSY167879:0:Tyes876034360357358
CRUT413404:0:Tyes--0---41-921
CSAL290398:0:Tyes1363-13621358135913600-1
CSP501479:6:Fyes0--------
CSP501479:7:Fyes--0------
CSP501479:8:Fyes--------0
CSP78:2:Tyes----012251-1613
CTEP194439:0:Tyes------0--
CTET212717:0:Tyes--0------
CTRA471472:0:Tyes----0----
CTRA471473:0:Tno----0----
CVES412965:0:Tyes--0---43--
CVIO243365:0:Tyes3344334533463750333433481060-0
DARO159087:0:Tyes309130923093-25101758-27
DDES207559:0:Tyes------0--
DETH243164:0:Tyes--0--2959--
DGEO319795:1:Tyes--71--0401--
DHAF138119:0:Tyes--1147-2240-0-1995
DNOD246195:0:Tyes-0794-797796--872
DOLE96561:0:Tyes--464--11400--
DPSY177439:2:Tyes--130107841356348--
DRAD243230:3:Tyes--29--0---
DRED349161:0:Tyes--1453-8868880--
DSHI398580:5:Tyes--------0
DSP216389:0:Tyes--0--3058--
DSP255470:0:Tno--0--3059--
DVUL882:1:Tyes----10535--
ECAN269484:0:Tyes------0--
ECAR218491:0:Tyes1098456301
ECHA205920:0:Tyes------0--
ECOL199310:0:Tno012654798
ECOL316407:0:Tno012654798
ECOL331111:6:Tno012543176687
ECOL362663:0:Tno012654798
ECOL364106:1:Tno0126548109
ECOL405955:2:Tyes-01543687
ECOL409438:6:Tyes012654798
ECOL413997:0:Tno012654798
ECOL439855:4:Tno012654798
ECOL469008:0:Tno987345201
ECOL481805:0:Tno987345201
ECOL585034:0:Tno-01543687
ECOL585035:0:Tno012654798
ECOL585055:0:Tno-01543687
ECOL585056:2:Tno-01653798
ECOL585057:0:Tno-01543687
ECOL585397:0:Tno-01543687
ECOL83334:0:Tno0127658109
ECOLI:0:Tno012654798
ECOO157:0:Tno0127658109
EFAE226185:3:Tyes--0------
EFER585054:1:Tyes012654798
ELIT314225:0:Tyes--2392---2329-0
ERUM254945:0:Tyes------0--
ERUM302409:0:Tno------0--
ESP42895:1:Tyes012654798
FALN326424:0:Tyes--0---2006--
FJOH376686:0:Tyes--0---26-1482
FNOD381764:0:Tyes----0----
FNUC190304:0:Tyes--0---207-361
FPHI484022:1:Tyes--1060312011785-976
FRANT:0:Tno--12426788999001223-0
FSP106370:0:Tyes--0---2748--
FSP1855:0:Tyes--1844---0--
FSUC59374:0:Tyes-----01251--
FTUL351581:0:Tno--0-448447936-1247
FTUL393011:0:Tno--062428427859-1123
FTUL393115:0:Tyes--12176708898901199-0
FTUL401614:0:Tyes--796-4184190-851
FTUL418136:0:Tno--491882787788339-0
FTUL458234:0:Tno--064449448881-1163
GBET391165:0:Tyes----1316-202-0
GFOR411154:0:Tyes--0---446--
GKAU235909:1:Tyes--127-29270--
GMET269799:1:Tyes346-1637-02608--
GSUL243231:0:Tyes701-0-9719731415--
GTHE420246:1:Tyes--122-29270--
GURA351605:0:Tyes0-1330-380378517--
GVIO251221:0:Tyes--1262-3318000--
HACI382638:1:Tyes------0--
HARS204773:0:Tyes192419231922175601920312-1902
HAUR316274:2:Tyes------1118-0
HCHE349521:0:Tyes3240-3239-323632370-3
HDUC233412:0:Tyes5-40----538
HHAL349124:0:Tyes-828827-8241178846-0
HHEP235279:0:Tyes--0------
HINF281310:0:Tyes602-601210--3
HINF374930:0:Tyes1039-1040234--0
HINF71421:0:Tno585-584210--3
HMOD498761:0:Tyes--1207-20771--
HNEP81032:0:Tyes----13631364208-0
HPY:0:Tno--0---537--
HPYL357544:1:Tyes--0---507--
HPYL85963:0:Tno--0---501--
HSOM205914:1:Tyes213-2121----0
HSOM228400:0:Tno651-6501----0
ILOI283942:0:Tyes012616171616798
JSP290400:1:Tyes--------0
JSP375286:0:Tyes101010091008865100510060-989
KPNE272620:2:Tyes0127658109
KRAD266940:2:Fyes--2773-026892141--
LACI272621:0:Tyes--0------
LBIF355278:2:Tyes--0------
LBIF456481:2:Tno--0------
LBOR355276:1:Tyes--721-0----
LBOR355277:1:Tno--0-672----
LBRE387344:2:Tyes--0------
LCAS321967:1:Tyes--0------
LCHO395495:0:Tyes16416516610416927431542-0
LDEL321956:0:Tyes--0------
LDEL390333:0:Tyes--0------
LGAS324831:0:Tyes--0------
LHEL405566:0:Tyes--0------
LINN272626:1:Tno--0---560--
LINT189518:1:Tyes--1501-0-715--
LINT267671:1:Tno--2032-551-0--
LINT363253:3:Tyes------0--
LJOH257314:0:Tyes--0------
LLAC272622:5:Tyes--0------
LLAC272623:0:Tyes--0------
LMES203120:1:Tyes--0------
LMON169963:0:Tno--0---488--
LMON265669:0:Tyes--0---459--
LPLA220668:0:Tyes--0------
LPNE272624:0:Tno012471248169513031304589--
LPNE297245:1:Fno012951294161412371236579--
LPNE297246:1:Fyes011511152162412081209597--
LPNE400673:0:Tno057958010566386392152--
LREU557436:0:Tyes--0------
LSAK314315:0:Tyes--0------
LSPH444177:1:Tyes--0---195--
LWEL386043:0:Tyes--0------
LXYL281090:0:Tyes--0---446--
MABS561007:1:Tyes--0---376--
MAER449447:0:Tyes--2743--01448--
MAQU351348:2:Tyes1715-1711-167517090-2
MAVI243243:0:Tyes--0---37--
MBAR269797:1:Tyes------0--
MBOV233413:0:Tno--36---0--
MBOV410289:0:Tno--36---0--
MCAP243233:0:Tyes55455555705605591523-1474
MEXT419610:0:Tyes--565---1723-0
MFLA265072:0:Tyes201120102009-192419251900-0
MGIL350054:3:Tyes--0---59--
MKAN190192:0:Tyes------0--
MLEP272631:0:Tyes--103---0--
MLOT266835:2:Tyes------3330-0
MMAG342108:0:Tyes------3026-0
MMAR394221:0:Tyes--2583-01407-1705
MPET420662:1:Tyes43944044104444431488-3143
MSME246196:0:Tyes--624---0--
MSP164756:1:Tno--0---63--
MSP164757:0:Tno--0---65--
MSP189918:2:Tyes--0---77--
MSP266779:3:Tyes--1461---534-0
MSP400668:0:Tyes9-8---0--
MSP409:2:Tyes0-----276-61
MSUC221988:0:Tyes0-1653--7
MTBCDC:0:Tno--38---0--
MTBRV:0:Tno--36---0--
MTHE264732:0:Tyes--277-20---
MTUB336982:0:Tno--35---0--
MTUB419947:0:Tyes--36---0--
MVAN350058:0:Tyes--550---0--
MXAN246197:0:Tyes--1963-463614713350-0
NARO279238:0:Tyes----246824670-2870
NEUR228410:0:Tyes-32--01546-1607
NEUT335283:2:Tyes501500499--497--0
NFAR247156:2:Tyes--1880---1819-0
NGON242231:0:Tyes1307-1306-130813041208-0
NHAM323097:2:Tyes------1523-0
NMEN122586:0:Tno293-2940292296359-624
NMEN122587:0:Tyes1797-17960179817941730-567
NMEN272831:0:Tno1058-1057-10591055992-0
NMEN374833:0:Tno1178-1177-117911751113-0
NMUL323848:3:Tyes011131114-889890537-800
NOCE323261:1:Tyes0-1219225463545-546
NSP103690:6:Tyes--0--700343--
NSP35761:1:Tyes--2511--6460--
NSP387092:0:Tyes--0-941-336--
NWIN323098:0:Tyes------1399-0
OANT439375:5:Tyes------0-1327
OCAR504832:0:Tyes0-----2209-324
OIHE221109:0:Tyes--1356-----0
OTSU357244:0:Fyes--------0
PABY272844:0:Tyes------0--
PACN267747:0:Tyes--0------
PAER208963:0:Tyes11-10-782-0
PAER208964:0:Tno10-9-67301
PARC259536:0:Tyes1003-018532579-1710
PATL342610:0:Tyes313731383139314203141314331463145
PCAR338963:0:Tyes887-0-139913971222--
PCRY335284:1:Tyes1333-020332535-1965
PDIS435591:0:Tyes------0--
PENT384676:0:Tyes3534-3533-13343531032
PFLU205922:0:Tyes4087-4086-408340840-2
PFLU216595:1:Tyes0-1-317737-9
PFLU220664:0:Tyes4372-4371-18754369032
PGIN242619:0:Tyes------0--
PHAL326442:1:Tyes0-271491211
PHOR70601:0:Tyes------0--
PING357804:0:Tyes667666665023664-2311
PINT246198:1:Tyes------0--
PLUM243265:0:Fyes8558548538508518528498480
PLUT319225:0:Tyes------0--
PMAR146891:0:Tyes------0--
PMAR167539:0:Tyes------0--
PMAR167540:0:Tyes------0--
PMAR167542:0:Tyes--0---164--
PMAR167546:0:Tyes--0--635154--
PMAR167555:0:Tyes------0--
PMAR59920:0:Tno------0--
PMAR74546:0:Tyes--0--1159144--
PMAR74547:0:Tyes--2163--02100--
PMAR93060:0:Tyes--0---150--
PMEN399739:0:Tyes0-1-437-9
PMUL272843:1:Tyes6-51-3--0
PNAP365044:8:Tyes543-01173-2637
PPRO298386:2:Tyes876-341-0
PPUT160488:0:Tno0-1--3157160159
PPUT351746:0:Tyes0-1--3138141140
PPUT76869:0:Tno0-1--372147150149
PRUM264731:0:Tyes------0--
PSP117:0:Tyes0-----2235--
PSP296591:2:Tyes54338070161-266
PSP312153:0:Tyes-01---939-21
PSP56811:2:Tyes1281-0-321834-368
PSTU379731:0:Tyes--3-012561-2554
PSYR205918:0:Tyes0-1543212423
PSYR223283:2:Tyes0-1543262928
PTHE370438:0:Tyes--1796-9549450--
RAKA293614:0:Fyes--------0
RALB246199:0:Tyes----8-0--
RCAN293613:0:Fyes--------0
RCAS383372:0:Tyes--3914---772-0
RCON272944:0:Tno--------0
RDEN375451:4:Tyes------0-447
RETL347834:3:Tyes------0--
RETL347834:5:Tyes--------0
REUT264198:3:Tyes2451245024490272524472222-2427
REUT381666:2:Tyes-26342633029042631241320932612
RFEL315456:2:Tyes--------0
RFER338969:1:Tyes16421641164001637163853-2081
RLEG216596:4:Tyes------0--
RLEG216596:6:Tyes--------0
RMAS416276:1:Tyes--------0
RMET266264:2:Tyes239238237-5192350-215
RPAL258594:0:Tyes--0---760-3261
RPAL316055:0:Tyes--0-2263-3989-1705
RPAL316056:0:Tyes------2161-0
RPAL316057:0:Tyes--0---813-3012
RPAL316058:0:Tyes--0---716-1601
RPOM246200:1:Tyes------274-0
RRIC392021:0:Fno--------0
RRIC452659:0:Tyes--------0
RRUB269796:1:Tyes------472-0
RSAL288705:0:Tyes--0------
RSOL267608:1:Tyes383382381-6866870-358
RSP101510:3:Fyes--0---58--
RSP357808:0:Tyes--3837---0-241
RSPH272943:4:Tyes1390-2018-----0
RSPH349101:2:Tno1338-1967-----0
RSPH349102:5:Tyes--------0
RXYL266117:0:Tyes-----10600-2094
SACI330779:0:Tyes------0--
SACI56780:0:Tyes--0-30030111--
SAGA205921:0:Tno--0------
SAGA208435:0:Tno--0------
SAGA211110:0:Tyes--0------
SALA317655:1:Tyes----01836-1436
SARE391037:0:Tyes--0---1318--
SAUR158878:1:Tno--0------
SAUR158879:1:Tno--0------
SAUR196620:0:Tno--0------
SAUR273036:0:Tno--0------
SAUR282458:0:Tno--0------
SAUR282459:0:Tno--0------
SAUR359786:1:Tno--0------
SAUR359787:1:Tno--0------
SAUR367830:3:Tno--0------
SAUR418127:0:Tyes--0------
SAUR426430:0:Tno--0------
SAUR93061:0:Fno--0------
SAUR93062:1:Tno--0------
SAVE227882:1:Fyes--1572---0-2530
SBAL399599:3:Tyes987-45201
SBAL402882:1:Tno1098-56201
SBOY300268:1:Tyes012--5798
SCO:2:Fyes--837---2241-0
SDEG203122:0:Tyes0-152751315-17
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