CANDIDATE ID: 194

CANDIDATE ID: 194

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9917611e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7326 (iscR) (b2531)
   Products of gene:
     - G7326-MONOMER (IscR transcriptional dual regulator)
       Regulatees:
        TU0-14811 (rnlA)
        TU0-8481 (nfuA)
        TU0-8480 (erpA)
        TU0-8482 (ydiU)
        TU0-8484 (napFDAGHBC)
        TU0-1881 (iscRSUA)
        TU0-2621 (sufABCDSE)
        TU00288 (hyaABCDEF)

- G7325 (iscS) (b2530)
   Products of gene:
     - G7325-MONOMER (cysteine desulfurase monomer)
     - CPLX0-248 (cysteine desulfurase)
       Reactions:
        a ThiI sulfur-carrier protein + L-cysteine  ->  a ThiI persulfide + L-alanine
         In pathways
         THISYN-PWY (thiamin biosynthesis I)
        L-cysteine + a protein L-cysteine  ->  a protein-S-sulfanylcysteine + L-alanine
         In pathways
         PWY0-1061 (superpathway of alanine biosynthesis)
         PWY0-1021 (alanine biosynthesis III)

- G7321 (yfgM) (b2513)
   Products of gene:
     - G7321-MONOMER (conserved protein)

- EG12401 (rlmN) (b2517)
   Products of gene:
     - EG12401-MONOMER (23S rRNA m2A2503 methyltransferase)
       Reactions:
        S-adenosyl-L-methionine + adenine2503 in 23S rRNA  ->  S-adenosyl-L-homocysteine + 2-methyladenine2503 in 23S rRNA

- EG12311 (iscX) (b2524)
   Products of gene:
     - EG12311-MONOMER (protein with possible role in iron-sulfur cluster biogenesis)

- EG12131 (hscB) (b2527)
   Products of gene:
     - EG12131-MONOMER (Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly)

- EG10650 (ndk) (b2518)
   Products of gene:
     - NUCLEOSIDE-DIP-KIN-MONOMER (Ndk)
     - NUCLEOSIDE-DIP-KIN-CPLX (nucleoside diphosphate kinase)
       Reactions:
        a ribonucleoside diphosphate + ATP  ->  a ribonucleoside triphosphate + ADP
        UDP + ATP  ->  UTP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         PWY0-162 (pyrimidine ribonucleotides de novo biosynthesis)
         PWY-5687 (pyrimidine ribonucleotides interconversion)
        CDP + ATP  ->  CTP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         PWY0-162 (pyrimidine ribonucleotides de novo biosynthesis)
         PWY0-163 (salvage pathways of pyrimidine ribonucleotides)
         PWY-5687 (pyrimidine ribonucleotides interconversion)
        dUDP + ATP  ->  dUTP + ADP + H+
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        dCDP + ATP  ->  dCTP + ADP + H+
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        dTDP + ATP  ->  dTTP + ADP + H+
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        2'-deoxyadenosine-5'-diphosphate + ATP  ->  dATP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6126 (adenosine nucleotides de novo biosynthesis)
        2'-deoxyguanosine-5'-diphosphate + ATP  ->  dGTP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6125 (guanosine nucleotides de novo biosynthesis)
        GDP + ATP  ->  GTP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6125 (guanosine nucleotides de novo biosynthesis)
         PPGPPMET-PWY (ppGpp biosynthesis)

- EG10370 (ispG) (b2515)
   Products of gene:
     - EG10370-MONOMER (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase)
       Reactions:
        2-C-methyl-D-erythritol-2,4-cyclodiphosphate + 2 a reduced ferredoxin  ->  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate + 2 an oxidized ferredoxin + H2O
         In pathways
         PWY-5121 (PWY-5121)
         PWY-6270 (PWY-6270)
         NONMEVIPP-PWY (methylerythritol phosphate pathway)

- EG10015 (rodZ) (b2516)
   Products of gene:
     - EG10015-MONOMER (rod shape-determining membrane protein)



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 118
Effective number of orgs (counting one per cluster within 468 clusters): 71

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317589
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329539
YPES386656 ncbi Yersinia pestis Pestoides F9
YPES377628 ncbi Yersinia pestis Nepal5169
YPES360102 ncbi Yersinia pestis Antiqua9
YPES349746 ncbi Yersinia pestis Angola9
YPES214092 ncbi Yersinia pestis CO929
YPES187410 ncbi Yersinia pestis KIM 109
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80819
VVUL216895 ncbi Vibrio vulnificus CMCP69
VVUL196600 ncbi Vibrio vulnificus YJ0169
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106339
VFIS312309 ncbi Vibrio fischeri ES1149
VCHO345073 ncbi Vibrio cholerae O3959
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169619
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252599
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT29
SSP94122 ncbi Shewanella sp. ANA-39
SSON300269 ncbi Shigella sonnei Ss0469
SSED425104 ncbi Shewanella sediminis HAW-EB39
SPRO399741 ncbi Serratia proteamaculans 5689
SPEA398579 ncbi Shewanella pealeana ATCC 7003459
SONE211586 ncbi Shewanella oneidensis MR-19
SLOI323850 ncbi Shewanella loihica PV-49
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SHAL458817 ncbi Shewanella halifaxensis HAW-EB49
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4769
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B679
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91509
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT189
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty29
SDYS300267 ncbi Shigella dysenteriae Sd1979
SDEN318161 ncbi Shewanella denitrificans OS2179
SBOY300268 ncbi Shigella boydii Sb2279
SBAL402882 ncbi Shewanella baltica OS1859
SBAL399599 ncbi Shewanella baltica OS1959
RSOL267608 ncbi Ralstonia solanacearum GMI10008
RMET266264 ncbi Ralstonia metallidurans CH349
REUT381666 ncbi Ralstonia eutropha H169
REUT264198 ncbi Ralstonia eutropha JMP1349
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30009
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a9
PSTU379731 ncbi Pseudomonas stutzeri A15019
PSP56811 Psychrobacter sp.8
PPUT76869 ncbi Pseudomonas putida GB-19
PPUT351746 ncbi Pseudomonas putida F19
PPUT160488 ncbi Pseudomonas putida KT24409
PPRO298386 ncbi Photobacterium profundum SS99
PMUL272843 ncbi Pasteurella multocida multocida Pm708
PMEN399739 ncbi Pseudomonas mendocina ymp9
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO19
PING357804 ncbi Psychromonas ingrahamii 379
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1258
PFLU220664 ncbi Pseudomonas fluorescens Pf-59
PFLU216595 ncbi Pseudomonas fluorescens SBW259
PFLU205922 ncbi Pseudomonas fluorescens Pf0-19
PENT384676 ncbi Pseudomonas entomophila L489
PATL342610 ncbi Pseudoalteromonas atlantica T6c8
PAER208964 ncbi Pseudomonas aeruginosa PAO19
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA149
NMEN374833 ncbi Neisseria meningitidis 0534428
NMEN272831 ncbi Neisseria meningitidis FAM188
NMEN122587 ncbi Neisseria meningitidis Z24918
NMEN122586 ncbi Neisseria meningitidis MC588
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E9
MPET420662 ncbi Methylibium petroleiphilum PM18
MFLA265072 ncbi Methylobacillus flagellatus KT9
MCAP243233 ncbi Methylococcus capsulatus Bath9
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785789
JSP375286 ncbi Janthinobacterium sp. Marseille9
HSOM228400 ncbi Haemophilus somnus 23368
HSOM205914 ncbi Haemophilus somnus 129PT8
HINF71421 ncbi Haemophilus influenzae Rd KW209
HINF374930 ncbi Haemophilus influenzae PittEE9
HINF281310 ncbi Haemophilus influenzae 86-028NP9
HDUC233412 ncbi Haemophilus ducreyi 35000HP9
HARS204773 ncbi Herminiimonas arsenicoxydans8
ESP42895 Enterobacter sp.9
EFER585054 ncbi Escherichia fergusonii ATCC 354699
ECOO157 ncbi Escherichia coli O157:H7 EDL9339
ECOL83334 Escherichia coli O157:H79
ECOL585397 ncbi Escherichia coli ED1a9
ECOL585057 ncbi Escherichia coli IAI399
ECOL585056 ncbi Escherichia coli UMN0269
ECOL585055 ncbi Escherichia coli 559899
ECOL585035 ncbi Escherichia coli S889
ECOL585034 ncbi Escherichia coli IAI19
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL469008 ncbi Escherichia coli BL21(DE3)9
ECOL439855 ncbi Escherichia coli SMS-3-59
ECOL413997 ncbi Escherichia coli B str. REL6069
ECOL409438 ncbi Escherichia coli SE119
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI899
ECOL362663 ncbi Escherichia coli 5369
ECOL331111 ncbi Escherichia coli E24377A9
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
ECOL199310 ncbi Escherichia coli CFT0739
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10439
DARO159087 ncbi Dechloromonas aromatica RCB9
CVIO243365 ncbi Chromobacterium violaceum ATCC 124728
CPSY167879 ncbi Colwellia psychrerythraea 34H9
BVIE269482 ncbi Burkholderia vietnamiensis G48
BSP36773 Burkholderia sp.8
BCEN331272 ncbi Burkholderia cenocepacia HI24248
BCEN331271 ncbi Burkholderia cenocepacia AU 10548
BAMB398577 ncbi Burkholderia ambifaria MC40-68
BAMB339670 ncbi Burkholderia ambifaria AMMD8
ASP76114 ncbi Aromatoleum aromaticum EbN19
ASP62977 ncbi Acinetobacter sp. ADP19
ASP62928 ncbi Azoarcus sp. BH729
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4498
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL039
APLE416269 ncbi Actinobacillus pleuropneumoniae L209
AHYD196024 Aeromonas hydrophila dhakensis8
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232709


Names of the homologs of the genes in the group in each of these orgs
  G7326   G7325   G7321   EG12401   EG12311   EG12131   EG10650   EG10370   EG10015   
YPSE349747 YPSIP31758_1167YPSIP31758_1168YPSIP31758_1188YPSIP31758_1183YPSIP31758_1174YPSIP31758_1171YPSIP31758_1182YPSIP31758_1186YPSIP31758_1185
YPSE273123 YPTB2860YPTB2859YPTB2839YPTB2844YPTB2853YPTB2856YPTB2845YPTB2841YPTB2842
YPES386656 YPDSF_2242YPDSF_2241YPDSF_2222YPDSF_2227YPDSF_2235YPDSF_2238YPDSF_2228YPDSF_2224YPDSF_2225
YPES377628 YPN_1240YPN_1241YPN_1261YPN_1256YPN_1247YPN_1244YPN_1255YPN_1259YPN_1258
YPES360102 YPA_2338YPA_2337YPA_2317YPA_2322YPA_2331YPA_2334YPA_2323YPA_2319YPA_2320
YPES349746 YPANGOLA_A0436YPANGOLA_A0435YPANGOLA_A0416YPANGOLA_A0421YPANGOLA_A0429YPANGOLA_A0432YPANGOLA_A0422YPANGOLA_A0418YPANGOLA_A0419
YPES214092 YPO2897YPO2896YPO2877YPO2882YPO2890YPO2893YPO2883YPO2879YPO2880
YPES187410 Y1333Y1334Y1355Y1350Y1341Y1338Y1349Y1353Y1352
YENT393305 YE1056YE1057YE1075YE1070YE1063YE1060YE1069YE1073YE1072
VVUL216895 VV1_0439VV1_0438VV1_0425VV1_0429VV1_0432VV1_0435VV1_0430VV1_0427VV1_0428
VVUL196600 VV0754VV0755VV0768VV0764VV0761VV0758VV0763VV0766VV0765
VPAR223926 VP0595VP0596VP0610VP0605VP0602VP0599VP0604VP0608VP0607
VFIS312309 VF0616VF0617VF0631VF0626VF0623VF0620VF0625VF0629VF0628
VCHO345073 VC0395_A0276VC0395_A0277VC0395_A0290VC0395_A0286VC0395_A0283VC0395_A0280VC0395_A0285VC0395_A0288VC0395_A0287
VCHO VC0747VC0748VC0761VC0757VC0754VC0751VC0756VC0759VC0758
TDEN292415 TBD_1163TBD_1164TBD_0596TBD_0591TBD_1170TBD_1167TBD_0590TBD_0594TBD_0593
STYP99287 STM2544STM2543STM2521STM2525STM2537STM2540STM2526STM2523STM2524
SSP94122 SHEWANA3_2281SHEWANA3_2280SHEWANA3_1231SHEWANA3_1226SHEWANA3_2273SHEWANA3_2277SHEWANA3_2272SHEWANA3_1229SHEWANA3_1228
SSON300269 SSO_2613SSO_2612SSO_2595SSO_2599SSO_2606SSO_2609SSO_2600SSO_2597SSO_2598
SSED425104 SSED_2872SSED_2871SSED_1434SSED_1429SSED_2863SSED_2868SSED_2862SSED_1432SSED_1431
SPRO399741 SPRO_3628SPRO_3627SPRO_3607SPRO_3612SPRO_3621SPRO_3624SPRO_3613SPRO_3609SPRO_3610
SPEA398579 SPEA_1487SPEA_1488SPEA_1307SPEA_1302SPEA_1496SPEA_1491SPEA_1498SPEA_1305SPEA_1304
SONE211586 SO_2263SO_2264SO_3310SO_3315SO_2271SO_2267SO_2274SO_3312SO_3313
SLOI323850 SHEW_2318SHEW_2317SHEW_1292SHEW_1287SHEW_2311SHEW_2314SHEW_2310SHEW_1290SHEW_1289
SHIGELLA S2750YFHOS2731YFGBYFHJYFHENDKGCPEYFGA
SHAL458817 SHAL_1571SHAL_1572SHAL_1369SHAL_1364SHAL_1578SHAL_1575SHAL_1580SHAL_1367SHAL_1366
SFLE373384 SFV_2579SFV_2578SFV_2560SFV_2564SFV_2572SFV_2575SFV_2565SFV_2562SFV_2563
SFLE198214 AAN44077.1AAN44076.1AAN44059.1AAN44063.1AAN44070.1AAN44073.1AAN44064.1AAN44061.1AAN44062.1
SENT454169 SEHA_C2806SEHA_C2805SEHA_C2778SEHA_C2783SEHA_C2799SEHA_C2802SEHA_C2784SEHA_C2781SEHA_C2782
SENT321314 SCH_2538SCH_2537SCH_2518SCH_2522SCH_2532SCH_2534SCH_2523SCH_2520SCH_2521
SENT295319 SPA0322SPA0323SPA0346SPA0342SPA0329SPA0326SPA0341SPA0344SPA0343
SENT220341 STY2790STY2789STY2766STY2770STY2783STY2786STY2771STY2768STY2769
SENT209261 T0312T0313T0335T0331T0319T0316T0330T0333T0332
SDYS300267 SDY_2727SDY_2726SDY_2709SDY_2713SDY_2720SDY_2723SDY_2714SDY_2711SDY_2712
SDEN318161 SDEN_1457SDEN_1458SDEN_1258SDEN_1253SDEN_0277SDEN_1461SDEN_2390SDEN_1256SDEN_1255
SBOY300268 SBO_2555SBO_2554SBO_2537SBO_2541SBO_2548SBO_2551SBO_2542SBO_2539SBO_2540
SBAL402882 SHEW185_2387SHEW185_2386SHEW185_3003SHEW185_3008SHEW185_2379SHEW185_2383SHEW185_2377SHEW185_3005SHEW185_3006
SBAL399599 SBAL195_2503SBAL195_2502SBAL195_3146SBAL195_3151SBAL195_2495SBAL195_2499SBAL195_2493SBAL195_3148SBAL195_3149
RSOL267608 RSC1018RSC1019RSC1217RSC1212RSC1026RSC1023RSC1211RSC1214
RMET266264 RMET_1024RMET_1025RMET_2104RMET_2109RMET_1031RMET_1028RMET_2110RMET_2106RMET_2107
REUT381666 H16_A1157H16_A1158H16_A2362H16_A2367H16_A1165H16_A1162H16_A2368H16_A2364H16_A2365
REUT264198 REUT_A1057REUT_A1058REUT_A2084REUT_A2089REUT_A1065REUT_A1062REUT_A2090REUT_A2086REUT_A2087
PSYR223283 PSPTO_1422PSPTO_1423PSPTO_1436PSPTO_1431PSPTO_1429PSPTO_1426PSPTO_1430PSPTO_1434PSPTO_1433
PSYR205918 PSYR_1236PSYR_1237PSYR_1250PSYR_1245PSYR_1243PSYR_1240PSYR_1244PSYR_1248PSYR_1247
PSTU379731 PST_3043PST_3042PST_3029PST_3034PST_3036PST_3039PST_3035PST_3031PST_3032
PSP56811 PSYCPRWF_1628PSYCPRWF_1629PSYCPRWF_1905PSYCPRWF_0641PSYCPRWF_1632PSYCPRWF_1906PSYCPRWF_1902PSYCPRWF_1903
PPUT76869 PPUTGB1_0884PPUTGB1_0885PPUTGB1_0898PPUTGB1_0893PPUTGB1_0891PPUTGB1_0888PPUTGB1_0892PPUTGB1_0896PPUTGB1_0895
PPUT351746 PPUT_0871PPUT_0872PPUT_0885PPUT_0880PPUT_0878PPUT_0875PPUT_0879PPUT_0883PPUT_0882
PPUT160488 PP_0841PP_0842PP_0855PP_0850PP_0848PP_0845PP_0849PP_0853PP_0852
PPRO298386 PBPRA0749PBPRA0750PBPRA0765PBPRA0760PBPRA0756PBPRA0753PBPRA0759PBPRA0763PBPRA0762
PMUL272843 PM0317PM0318PM2012PM2007PM0321PM1028PM2010PM2009
PMEN399739 PMEN_3512PMEN_3511PMEN_3498PMEN_3503PMEN_3505PMEN_3508PMEN_3504PMEN_3500PMEN_3501
PLUM243265 PLU3284PLU3283PLU1378PLU1373PLU3277PLU3280PLU1372PLU1376PLU1375
PING357804 PING_1323PING_1324PING_1170PING_1165PING_1330PING_1327PING_3326PING_1168PING_1167
PHAL326442 PSHAA2672PSHAA2671PSHAB0136PSHAB0141PSHAA2668PSHAB0142PSHAB0138PSHAB0139
PFLU220664 PFL_4966PFL_4965PFL_4952PFL_4957PFL_4959PFL_4962PFL_4958PFL_4954PFL_4955
PFLU216595 PFLU5069PFLU5068PFLU5055PFLU5060PFLU5062PFLU5065PFLU5061PFLU5057PFLU5058
PFLU205922 PFL_4613PFL_4612PFL_4599PFL_4604PFL_4606PFL_4609PFL_4605PFL_4601PFL_4602
PENT384676 PSEEN1009PSEEN1010PSEEN1023PSEEN1018PSEEN1016PSEEN1013PSEEN1017PSEEN1021PSEEN1020
PATL342610 PATL_1237PATL_1238PATL_3124PATL_3129PATL_1241PATL_3130PATL_3126PATL_3127
PAER208964 PA3815PA3814PA3801PA3806PA3808PA3811PA3807PA3803PA3804
PAER208963 PA14_14710PA14_14730PA14_14900PA14_14830PA14_14810PA14_14770PA14_14820PA14_14880PA14_14860
NMEN374833 NMCC_1291NMCC_1293NMCC_0811NMCC_1221NMCC_1056NMCC_1297NMCC_1220NMCC_1223
NMEN272831 NMC1314NMC1315NMC0793NMC1245NMC1076NMC1319NMC1244NMC1247
NMEN122587 NMA1593NMA1594NMA1064NMA1522NMA1347NMA1598NMA1521NMA1524
NMEN122586 NMB_1378NMB_1379NMB_0853NMB_1308NMB_1175NMB_1383NMB_1307NMB_1310
MSUC221988 MS1727MS1726MS1921MS1916MS1719MS1722MS0668MS1919MS1918
MPET420662 MPE_A2263MPE_A2262MPE_A1994MPE_A1999MPE_A2259MPE_A2000MPE_A1996MPE_A1997
MFLA265072 MFLA_0810MFLA_0808MFLA_1616MFLA_1623MFLA_1920MFLA_0805MFLA_1624MFLA_1620MFLA_1621
MCAP243233 MCA_2883MCA_0247MCA_2890MCA_2887MCA_2825MCA_0251MCA_2886MCA_2483MCA_1363
KPNE272620 GKPORF_B2197GKPORF_B2196GKPORF_B2176GKPORF_B2181GKPORF_B2190GKPORF_B2193GKPORF_B2182GKPORF_B2178GKPORF_B2179
JSP375286 MMA_1251MMA_1252MMA_2125MMA_2130MMA_1258MMA_1255MMA_2131MMA_2127MMA_2128
HSOM228400 HSM_0153HSM_0154HSM_0731HSM_0364HSM_0157HSM_0712HSM_0729HSM_0728
HSOM205914 HS_0280HS_0281HS_0406HS_1198HS_0284HS_0387HS_0404HS_0403
HINF71421 HI_0379HI_0378HI_0370HI_0365HI_0371HI_0375HI_0876HI_0368HI_0367
HINF374930 CGSHIEE_01110CGSHIEE_01115CGSHIEE_01155CGSHIEE_01185CGSHIEE_01150CGSHIEE_01130CGSHIEE_07650CGSHIEE_01170CGSHIEE_01175
HINF281310 NTHI0499NTHI0498NTHI0490NTHI0485NTHI0491NTHI0495NTHI1039NTHI0488NTHI0487
HDUC233412 HD_1080HD_1082HD_1040HD_0319HD_1089HD_1085HD_1053HD_1037HD_1036
HARS204773 HEAR2240HEAR2239HEAR1266HEAR1261HEAR2233HEAR2236HEAR1260HEAR1264
ESP42895 ENT638_3028ENT638_3027ENT638_3007ENT638_3011ENT638_3021ENT638_3024ENT638_3012ENT638_3009ENT638_3010
EFER585054 EFER_0641EFER_0642EFER_0659EFER_0655EFER_0648EFER_0645EFER_0654EFER_0657EFER_0656
ECOO157 Z3798YFHOZ3776YFGBYFHJYFHENDKGCPEYFGA
ECOL83334 ECS3397ECS3396ECS3375ECS3379ECS3390ECS3393ECS3380ECS3377ECS3378
ECOL585397 ECED1_2962ECED1_2961ECED1_2944ECED1_2948ECED1_2955ECED1_2958ECED1_2949ECED1_2946ECED1_2947
ECOL585057 ECIAI39_2732ECIAI39_2731ECIAI39_2714ECIAI39_2718ECIAI39_2725ECIAI39_2728ECIAI39_2719ECIAI39_2716ECIAI39_2717
ECOL585056 ECUMN_2851ECUMN_2850ECUMN_2833ECUMN_2837ECUMN_2844ECUMN_2847ECUMN_2838ECUMN_2835ECUMN_2836
ECOL585055 EC55989_2816EC55989_2815EC55989_2798EC55989_2802EC55989_2809EC55989_2812EC55989_2803EC55989_2800EC55989_2801
ECOL585035 ECS88_2707ECS88_2706ECS88_2689ECS88_2693ECS88_2700ECS88_2703ECS88_2694ECS88_2691ECS88_2692
ECOL585034 ECIAI1_2583ECIAI1_2582ECIAI1_2565ECIAI1_2569ECIAI1_2576ECIAI1_2579ECIAI1_2570ECIAI1_2567ECIAI1_2568
ECOL481805 ECOLC_1146ECOLC_1147ECOLC_1164ECOLC_1160ECOLC_1153ECOLC_1150ECOLC_1159ECOLC_1162ECOLC_1161
ECOL469008 ECBD_1153ECBD_1154ECBD_1173ECBD_1169ECBD_1160ECBD_1157ECBD_1168ECBD_1171ECBD_1170
ECOL439855 ECSMS35_2684ECSMS35_2683ECSMS35_2665ECSMS35_2669ECSMS35_2676ECSMS35_2679ECSMS35_2670ECSMS35_2667ECSMS35_2668
ECOL413997 ECB_02423ECB_02422ECB_02405ECB_02409ECB_02416ECB_02419ECB_02410ECB_02407ECB_02408
ECOL409438 ECSE_2817ECSE_2816ECSE_2799ECSE_2803ECSE_2810ECSE_2813ECSE_2804ECSE_2801ECSE_2802
ECOL405955 APECO1_3994APECO1_3995APECO1_4011APECO1_4007APECO1_3998APECO1_4006APECO1_4009APECO1_4008
ECOL364106 UTI89_C2853UTI89_C2852UTI89_C2834UTI89_C2838UTI89_C2846UTI89_C2849UTI89_C2840UTI89_C2836UTI89_C2837
ECOL362663 ECP_2536ECP_2535ECP_2518ECP_2522ECP_2529ECP_2532ECP_2523ECP_2520ECP_2521
ECOL331111 ECE24377A_2816ECE24377A_2815ECE24377A_2797ECE24377A_2801ECE24377A_2808ECE24377A_2811ECE24377A_2802ECE24377A_2799ECE24377A_2800
ECOL316407 ECK2528:JW2515:B2531ECK2527:JW2514:B2530ECK2509:JW2497:B2513ECK2513:JW2501:B2517ECK2521:JW2508:B2524ECK2524:JW2511:B2527ECK2514:JW2502:B2518ECK2511:JW2499:B2515ECK2512:JW2500:B2516
ECOL199310 C3057C3056C3035C3039C3049C3052C3041C3037C3038
ECAR218491 ECA3238ECA3237ECA3218ECA3223ECA3231ECA3234ECA3224ECA3220ECA3221
DARO159087 DARO_1948DARO_1950DARO_2983DARO_2988DARO_1956DARO_1953DARO_2989DARO_2985DARO_2986
CVIO243365 CV_1095CV_1094CV_3536CV_3541CV_1087CV_1091CV_3542CV_3539
CPSY167879 CPS_1131CPS_1132CPS_4250CPS_4255CPS_4263CPS_1135CPS_4256CPS_4252CPS_4253
BVIE269482 BCEP1808_2206BCEP1808_2205BCEP1808_1737BCEP1808_1741BCEP1808_2199BCEP1808_2202BCEP1808_1742BCEP1808_1740
BSP36773 BCEP18194_A5433BCEP18194_B2412BCEP18194_A5111BCEP18194_A5115BCEP18194_A5426BCEP18194_A5429BCEP18194_A5116BCEP18194_A5114
BCEN331272 BCEN2424_2127BCEN2424_2126BCEN2424_1810BCEN2424_1814BCEN2424_2120BCEN2424_2123BCEN2424_1815BCEN2424_1813
BCEN331271 BCEN_5950BCEN_5951BCEN_6269BCEN_6265BCEN_5957BCEN_5954BCEN_6264BCEN_6266
BAMB398577 BAMMC406_2037BAMMC406_2036BAMMC406_1721BAMMC406_1725BAMMC406_2030BAMMC406_2033BAMMC406_1726BAMMC406_1724
BAMB339670 BAMB_2164BAMB_2163BAMB_1748BAMB_1752BAMB_2157BAMB_2160BAMB_1753BAMB_1751
ASP76114 EBA6404EBA6401EBA1259EBA1268EBA6395EBA6397EBB37EBA1261EBA1262
ASP62977 ACIAD1405ACIAD1404ACIAD0563ACIAD0557ACIAD0555ACIAD1400ACIAD0556ACIAD0561ACIAD0560
ASP62928 AZO2018AZO2016AZO0929AZO0924AZO2010AZO2013AZO0923AZO0927AZO0926
ASAL382245 ASA_2613ASA_2612ASA_2597ASA_2602ASA_2608ASA_2603ASA_2599ASA_2600
APLE434271 APJL_0942APJL_0941APJL_1195APJL_1285APJL_0933APJL_0938APJL_0367APJL_1198APJL_1199
APLE416269 APL_0932APL_0931APL_1174APL_1274APL_0923APL_0928APL_0351APL_1176APL_1177
AHYD196024 AHA_1746AHA_1747AHA_1761AHA_1756AHA_1750AHA_1755AHA_1759AHA_1758
AFER243159 AFE_2368AFE_2367AFE_1155AFE_1160AFE_2361AFE_2364AFE_1161AFE_1157AFE_1158


Organism features enriched in list (features available for 113 out of the 118 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0004986792
Arrangment:Pairs 0.000319535112
Arrangment:Singles 0.004455667286
Disease:Bubonic_plague 0.000047566
Disease:Dysentery 0.000047566
Disease:Gastroenteritis 8.462e-61013
Disease:Meningitis_and_septicemia 0.001351544
Disease:Plant_rot 0.007126133
Disease:chronic_bronchitis 0.007126133
Endospores:No 0.000369826211
GC_Content_Range4:0-40 2.260e-158213
GC_Content_Range4:40-60 2.959e-1479224
GC_Content_Range7:30-40 6.424e-108166
GC_Content_Range7:40-50 0.003204233117
GC_Content_Range7:50-60 1.739e-1046107
Genome_Size_Range5:0-2 2.277e-124155
Genome_Size_Range5:2-4 5.312e-717197
Genome_Size_Range5:4-6 6.314e-1774184
Genome_Size_Range5:6-10 0.00087751847
Genome_Size_Range9:1-2 2.203e-94128
Genome_Size_Range9:2-3 0.002465813120
Genome_Size_Range9:3-4 0.0001396477
Genome_Size_Range9:4-5 5.956e-83996
Genome_Size_Range9:5-6 6.958e-73588
Genome_Size_Range9:6-8 0.00014731738
Gram_Stain:Gram_Neg 1.657e-20105333
Habitat:Multiple 0.000106951178
Habitat:Terrestrial 0.0081961131
Motility:No 6.586e-124151
Motility:Yes 5.620e-979267
Optimal_temp.:35-37 0.0007589813
Oxygen_Req:Aerobic 0.000558822185
Oxygen_Req:Anaerobic 8.602e-74102
Oxygen_Req:Facultative 1.305e-1981201
Pathogenic_in:Human 0.000027760213
Pathogenic_in:No 2.166e-623226
Shape:Coccus 0.0008123682
Shape:Rod 1.859e-1197347
Temp._range:Mesophilic 0.0040355101473
Temp._range:Psychrophilic 0.002155769
Temp._range:Thermophilic 0.0037253135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 141
Effective number of orgs (counting one per cluster within 468 clusters): 119

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81021
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P21
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F11
SGOR29390 Streptococcus gordonii Challis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
PTOR263820 ncbi Picrophilus torridus DSM 97901
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
NSP35761 Nocardioides sp.1
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NFAR247156 ncbi Nocardia farcinica IFM 101521
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
EFAE226185 ncbi Enterococcus faecalis V5831
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1350
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K11
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7326   G7325   G7321   EG12401   EG12311   EG12131   EG10650   EG10370   EG10015   
UURE95667
UURE95664
UPAR505682
TWHI218496 TW0559
TWHI203267 TW186
TVOL273116
TPEN368408
TPAL243276 TP_0446
TKOD69014
TDEN243275 TDE_1265
TACI273075
STOK273063 ST0280
STHE322159 STER_1660
STHE299768 STR1696
STHE264199 STU1696
SSUI391296 SSU98_1686
SSUI391295
SSP84588 SYNW1174OR0168
SSP1131 SYNCC9605_1298
SSOL273057 SSO0230
SPYO370554
SPYO370553
SPYO370552 MGAS10270_SPY1277
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221 SP70585_0811
SPNE487214 SPH_0867
SPNE487213
SPNE171101 SPR0676
SPNE170187 SPN04149
SPNE1313
SMUT210007 SMU_522
SMAR399550 SMAR_0828
SGOR29390 SGO_0654
SERY405948 SACE_5992
SARE391037 SARE_1304
SAGA211110 GBS0505
SAGA208435 SAG_0458
SAGA205921 SAK_0559
SACI330779 SACI_0696
RSAL288705 RSAL33209_0641
PTOR263820 PTO1283
PRUM264731 GFRORF2858
PPEN278197
PMAR93060 P9215_07611
PMAR74546 PMT9312_0676
PMAR167546 P9301ORF_0744
PMAR167542 P9515ORF_0787
PMAR167540 PMM0676
PMAR146891 A9601_07311
PISL384616
PHOR70601
PFUR186497 PF0931
PAST100379
PARS340102
PAER178306
PACN267747 PPA1506
PABY272844 PAB1489
NSP35761 NOCA_3202
NPHA348780 NP3666A
NFAR247156 NFA41180
MTHE187420 MTH258
MSYN262723
MSED399549
MPUL272635
MPNE272634
MPEN272633 MYPE9400
MMYC272632
MMOB267748
MMAZ192952 MM0109
MMAR444158 MMARC6_0670
MMAR426368
MMAR402880 MMARC5_1390
MMAR368407 MEMAR_1914
MMAR267377 MMP0283
MLEP272631 ML1581
MLAB410358 MLAB_0266
MKAN190192 MK1591
MJAN243232 MJ_1265
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797 MBAR_A3201
MAVI243243 MAV_3725
MART243272
MAEO419665
MACE188937 MA2718
LXYL281090 LXX12200
LSAK314315
LREU557436
LPLA220668 LP_2304
LMES203120
LLAC272623
LLAC272622 LACR_0188
LJOH257314
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LACI272621
KRAD266940 KRAD_1429
IHOS453591 IGNI_0725
HWAL362976
HSP64091 VNG1160G
HSAL478009 OE2667F
HMUK485914 HMUK_2624
HMAR272569 RRNAC0106
HBUT415426 HBUT_0549
EFAE226185 EF_2048
CSUL444179
CMIC443906 CMM_2156
CMIC31964 CMS1849
CMET456442 MBOO_0356
CMAQ397948
CKOR374847
CGLU196627 CG2206
CDIP257309 DIP1498
BXEN266265 BXE_B1444
BTUR314724
BHER314723
BGAR290434
BBUR224326
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_1404
APER272557 APE2377
ALAI441768 ACL_0251
AAUR290340 AAUR_1546


Organism features enriched in list (features available for 131 out of the 141 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00009993592
Disease:Wide_range_of_infections 5.265e-81111
Endospores:No 5.202e-2497211
Endospores:Yes 0.0005300353
GC_Content_Range4:0-40 6.415e-874213
GC_Content_Range4:40-60 0.008747540224
GC_Content_Range4:60-100 0.000093617145
GC_Content_Range7:0-30 0.00195061947
GC_Content_Range7:30-40 0.000062755166
GC_Content_Range7:50-60 0.006373715107
GC_Content_Range7:60-70 3.283e-612134
Genome_Size_Range5:0-2 1.016e-1876155
Genome_Size_Range5:4-6 4.205e-158184
Genome_Size_Range5:6-10 0.0019027347
Genome_Size_Range9:0-1 5.061e-71827
Genome_Size_Range9:1-2 2.349e-1158128
Genome_Size_Range9:4-5 1.031e-7496
Genome_Size_Range9:5-6 7.914e-7488
Genome_Size_Range9:6-8 0.0005238138
Gram_Stain:Gram_Neg 5.191e-2524333
Gram_Stain:Gram_Pos 1.581e-655150
Habitat:Specialized 0.00152832153
Motility:No 1.872e-1063151
Motility:Yes 0.000010739267
Optimal_temp.:- 4.899e-636257
Optimal_temp.:30-35 0.000644867
Optimal_temp.:85 0.002459344
Oxygen_Req:Aerobic 0.000273026185
Oxygen_Req:Anaerobic 0.003757633102
Oxygen_Req:Facultative 0.000403161201
Pathogenic_in:Animal 0.0000271366
Pathogenic_in:No 0.003807163226
Pathogenic_in:Swine 0.000539455
Salinity:Extreme_halophilic 0.006924357
Salinity:Non-halophilic 0.001992935106
Shape:Coccus 2.509e-124582
Shape:Irregular_coccus 1.622e-71417
Shape:Rod 4.015e-1835347
Shape:Sphere 1.519e-71519
Temp._range:Hyperthermophilic 9.943e-71623



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 6
Effective number of orgs (counting one per cluster within 468 clusters): 5

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
NSEN222891 ncbi Neorickettsia sennetsu Miyayama 0.00065462506
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden 0.00381903376
ERUM302409 ncbi Ehrlichia ruminantium Gardel 0.00402313406
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 23270 0.004345312999
AMAR234826 ncbi Anaplasma marginale St. Maries 0.00438313456
HDUC233412 ncbi Haemophilus ducreyi 35000HP 0.006402913569


Names of the homologs of the genes in the group in each of these orgs
  G7326   G7325   G7321   EG12401   EG12311   EG12131   EG10650   EG10370   EG10015   
NSEN222891 NSE_0304NSE_0303NSE_0581NSE_0299NSE_0560NSE_0799
ERUM254945 ERWE_CDS_04280ERWE_CDS_04310ERWE_CDS_01970ERWE_CDS_04340ERWE_CDS_09080ERWE_CDS_04950
ERUM302409 ERGA_CDS_04240ERGA_CDS_04250ERGA_CDS_01920ERGA_CDS_04280ERGA_CDS_08980ERGA_CDS_04850
AFER243159 AFE_2368AFE_2367AFE_1155AFE_1160AFE_2361AFE_2364AFE_1161AFE_1157AFE_1158
AMAR234826 AM656AM655AM299AM652AM1137AM741
HDUC233412 HD_1080HD_1082HD_1040HD_0319HD_1089HD_1085HD_1053HD_1037HD_1036


Organism features enriched in list (features available for 6 out of the 6 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Genome_Size_Range5:0-2 0.00562555155
Pathogenic_in:Ruminant 0.000263423
Shape:Pleomorphic_coccus 0.000088422



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181130.6159
AST-PWY (arginine degradation II (AST pathway))120790.5845
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176950.5611
ECASYN-PWY (enterobacterial common antigen biosynthesis)191970.5404
GLUTDEG-PWY (glutamate degradation II)194970.5330
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195960.5218
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50440.5206
GLYCOCAT-PWY (glycogen degradation I)2461080.5146
GALACTITOLCAT-PWY (galactitol degradation)73530.4989
GLUCONSUPER-PWY (D-gluconate degradation)2291010.4896
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491050.4837
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491050.4837
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001150.4770
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81540.4709
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)225970.4638
PWY-46 (putrescine biosynthesis III)138730.4623
PWY-5386 (methylglyoxal degradation I)3051140.4608
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961120.4589
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911110.4588
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901100.4523
PWY-1269 (CMP-KDO biosynthesis I)3251160.4465
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4348
PWY-5913 (TCA cycle variation IV)3011100.4344
PWY-5148 (acyl-CoA hydrolysis)227940.4342
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91540.4264
PWY-4041 (γ-glutamyl cycle)2791030.4132
PWY0-1182 (trehalose degradation II (trehalase))70450.4117
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149710.4108
LIPASYN-PWY (phospholipases)212870.4050
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481150.4050
PWY0-901 (selenocysteine biosynthesis I (bacteria))230910.4027
GLUCARDEG-PWY (D-glucarate degradation I)152710.4026



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7325   G7321   EG12401   EG12311   EG12131   EG10650   EG10370   EG10015   
G73260.999920.9988050.9986190.9994360.9997120.9988490.9987470.998853
G73250.9988730.9987940.9994430.9997540.9989010.9988660.998958
G73210.999720.9987350.9986230.999640.9996820.999741
EG124010.9988930.9985440.9997460.9996490.999774
EG123110.9995590.9991120.9987290.998848
EG121310.9987740.9986120.998703
EG106500.9993260.999652
EG103700.999748
EG10015



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PAIRWISE BLAST SCORES:

  G7326   G7325   G7321   EG12401   EG12311   EG12131   EG10650   EG10370   EG10015   
G73260.0f0--------
G7325-0.0f0-------
G7321--0.0f0------
EG12401---0.0f0-----
EG12311----0.0f0----
EG12131-----0.0f0---
EG10650------0.0f0--
EG10370-------0.0f0-
EG10015--------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10015 EG10370 EG10650 EG12401 (centered at EG12401)
G7321 (centered at G7321)
EG12311 (centered at EG12311)
EG12131 (centered at EG12131)
G7325 G7326 (centered at G7326)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7326   G7325   G7321   EG12401   EG12311   EG12131   EG10650   EG10370   EG10015   
337/623326/623182/623408/623140/623170/623424/623407/623163/623
AAEO224324:0:Tyes-221-0---787-
AAUR290340:2:Tyes-------0-
AAVE397945:0:Tyes1006100761-10100-3
ABAC204669:0:Tyes76-1095033418951-
ABAU360910:0:Tyes0183583974840--
ABOR393595:0:Tyes151405--623
ABUT367737:0:Tyes2107551-0--232595-
ACAU438753:0:Tyes---0--34433885-
ACEL351607:0:Tyes---788--0774-
ACRY349163:8:Tyes---1698--29910
ADEH290397:0:Tyes-0-10517310493391-
AEHR187272:0:Tyes12530624620--619-622
AFER243159:0:Tyes119711960511901193623
AFUL224325:0:Tyes-0----570--
AHYD196024:0:Tyes011510-491312
ALAI441768:0:Tyes---0-----
AMAR234826:0:Tyes262261--0259614313-
AMAR329726:9:Tyes31282480----35430-
AMET293826:0:Tyes01-325---226-
ANAE240017:0:Tyes---4---0-
AORE350688:0:Tyes235234-0---88-
APER272557:0:Tyes------0--
APHA212042:0:Tyes-217--5072207270-
APLE416269:0:Tyes5835828229205745790824825
APLE434271:0:Tno5525518078975435480810811
ASAL382245:5:Tyes151404-10523
ASP1667:3:Tyes-------0-
ASP232721:2:Tyes93593461-9310--
ASP62928:0:Tyes112411226111161119043
ASP62977:0:Tyes819818720815154
ASP76114:2:Tyes303730350530293032623
AVAR240292:3:Tyes27014----30040-
BABO262698:0:Tno0--------
BABO262698:1:Tno---0--5991617-
BAMB339670:3:Tno428427044214245-3
BAMB398577:3:Tno323322043163195-3
BAMY326423:0:Tyes904--0--531779-
BANT260799:0:Tno28472846-2271--02735-
BANT261594:2:Tno28442843-2244--02726-
BANT568206:2:Tyes39493948-0--24103826-
BANT592021:2:Tno30113010-2402--02887-
BAPH198804:0:Tyes-3003060-302-1-
BAPH372461:0:Tyes-2122180-214---
BBAC264462:0:Tyes-417-0--2863--
BBAC360095:0:Tyes---784--0--
BBRO257310:0:Tyes0189389774898--
BCAN483179:0:Tno0--------
BCAN483179:1:Tno---0--6051676-
BCEN331271:0:Tno0133032674325-327
BCEN331272:3:Tyes317316043103135-3
BCER226900:1:Tyes2813--2290--02697-
BCER288681:0:Tno27262725-2210--02614-
BCER315749:1:Tyes17741773-1192--01673-
BCER405917:1:Tyes26862685-2132--02565-
BCER572264:1:Tno29022901-2367--02782-
BCIC186490:0:Tyes-0----12-
BCLA66692:0:Tyes0-----311124-
BFRA272559:1:Tyes---0---3114-
BFRA295405:0:Tno---0---3345-
BHAL272558:0:Tyes01-1251--399142-
BHEN283166:0:Tyes---0--504--
BJAP224911:0:Fyes---0--3615417-
BLIC279010:0:Tyes10531052-0--603864-
BLON206672:0:Tyes---1391---0-
BMAL243160:1:Tno325324043183215--
BMAL320388:1:Tno373372043663695--
BMAL320389:1:Tyes375374043683715--
BMEL224914:0:Tno0--------
BMEL224914:1:Tno---1632--10160-
BMEL359391:1:Tno---0--5831561-
BOVI236:0:Tyes0--------
BOVI236:1:Tyes---0--5451464-
BPAR257311:0:Tno0178478774788--
BPER257313:0:Tyes0135135574356--
BPET94624:0:Tyes766765517597620--
BPSE272560:1:Tyes773772517667690--
BPSE320372:1:Tno322321043153185--
BPSE320373:1:Tno393392043863895--
BPUM315750:0:Tyes905904-0--519750-
BQUI283165:0:Tyes---0--408--
BSP107806:2:Tyes-3123180-314-1-
BSP36773:1:Tyes-0-------
BSP36773:2:Tyes334-043273305-3
BSP376:0:Tyes---0--2924274-
BSUB:0:Tyes12161215-0--725966-
BSUI204722:0:Tyes0--------
BSUI204722:1:Tyes---0--5901643-
BSUI470137:0:Tno91------0-
BSUI470137:1:Tno---0--619--
BTHA271848:1:Tno0135435074349--
BTHE226186:0:Tyes---1887---0-
BTHU281309:1:Tno27172716-2194--02606-
BTHU412694:1:Tno24892488-2018--02384-
BTRI382640:1:Tyes---0--720--
BVIE269482:7:Tyes467466044604635-3
BWEI315730:4:Tyes27192718-2172--02608-
BXEN266265:1:Tyes-0-------
CABO218497:0:Tyes------0280-
CACE272562:1:Tyes0550-51---121-
CAULO:0:Tyes1754--0--1587722-
CBEI290402:0:Tyes6400-51---99-
CBLO203907:0:Tyes-1----0--
CBLO291272:0:Tno-3-1--20-
CBOT36826:1:Tno01370-1305---1224-
CBOT441770:0:Tyes01273-1147---1063-
CBOT441771:0:Tno01192-1116---1032-
CBOT441772:1:Tno01341-1277---1197-
CBOT498213:1:Tno01378-1245---1162-
CBOT508765:1:Tyes01-51---99-
CBOT515621:2:Tyes01554-1492---1405-
CBOT536232:0:Tno01497-1432---1347-
CBUR227377:1:Tyes-0114118--124-116
CBUR360115:1:Tno-0105110--116-107
CBUR434922:2:Tno-098103--109-100
CCAV227941:1:Tyes------0299-
CCHL340177:0:Tyes---624--0146-
CCON360104:2:Tyes---1620--0316-
CCUR360105:0:Tyes---0--15751208-
CDES477974:0:Tyes1439778----0505-
CDIF272563:1:Tyes01-1324---870-
CDIP257309:0:Tyes-------0-
CEFF196164:0:Fyes---4---0-
CFEL264202:1:Tyes------3090-
CFET360106:0:Tyes---1536--0730-
CGLU196627:0:Tyes-------0-
CHOM360107:1:Tyes0--823--587105-
CHUT269798:0:Tyes0--2877--33951968-
CHYD246194:0:Tyes19301929-1229--01513-
CJAP155077:0:Tyes011813--121615
CJEI306537:0:Tyes---4---0-
CJEJ192222:0:Tyes---1359--0349-
CJEJ195099:0:Tno---1456--0394-
CJEJ354242:2:Tyes---1300--0335-
CJEJ360109:0:Tyes---719--2810-
CJEJ407148:0:Tno---1350--0359-
CKLU431943:1:Tyes2300-286---338-
CMET456442:0:Tyes-0-------
CMIC31964:2:Tyes-------0-
CMIC443906:2:Tyes-------0-
CMUR243161:1:Tyes------4540-
CNOV386415:0:Tyes143142-100---0-
CPEL335992:0:Tyes222-----2010-
CPER195102:1:Tyes9493-48---0-
CPER195103:0:Tno9291-47---0-
CPER289380:3:Tyes9291-47---0-
CPHY357809:0:Tyes01074-657---789-
CPNE115711:1:Tyes------0252-
CPNE115713:0:Tno------2490-
CPNE138677:0:Tno------2520-
CPNE182082:0:Tno------2650-
CPRO264201:0:Fyes---333--0380-
CPSY167879:0:Tyes013027303230404303330293030
CRUT413404:0:Tyes187186-112518303-
CSAL290398:0:Tyes0194--376
CSP501479:7:Fyes---0-----
CSP501479:8:Fyes319-----0457-
CSP78:2:Tyes2408--0--2360770-
CTEP194439:0:Tyes-801-0--808--
CTET212717:0:Tyes01-160---205-
CTRA471472:0:Tyes------4560-
CTRA471473:0:Tno------4560-
CVES412965:0:Tyes171170-111116703-
CVIO243365:0:Tyes8725172522042523-2520
DARO159087:0:Tyes021035104085104110371038
DDES207559:0:Tyes02476-2355--8051587-
DETH243164:0:Tyes-0----143119-
DGEO319795:1:Tyes0--134--1183--
DHAF138119:0:Tyes22672266-2531--02377-
DNOD246195:0:Tyes--40----2
DOLE96561:0:Tyes205189-257--5730-
DPSY177439:2:Tyes-1091-796--8090-
DRAD243230:3:Tyes1681--549--20790-
DRED349161:0:Tyes655656-1602--01854-
DSHI398580:5:Tyes454--2149--1670-
DSP216389:0:Tyes1024-----230-
DSP255470:0:Tno12440----7047-
DVUL882:1:Tyes0134-2363--1793811-
ECAN269484:0:Tyes220219--0216702--
ECAR218491:0:Tyes2019051316623
ECHA205920:0:Tyes01--2624463--
ECOL199310:0:Tno2221041417623
ECOL316407:0:Tno1918041215523
ECOL331111:6:Tno1918041114523
ECOL362663:0:Tno1817041114523
ECOL364106:1:Tno1918041215623
ECOL405955:2:Tyes171604-13523
ECOL409438:6:Tyes1817041114523
ECOL413997:0:Tno1817041114523
ECOL439855:4:Tno1918041114523
ECOL469008:0:Tno01201674151817
ECOL481805:0:Tno01181474131615
ECOL585034:0:Tno2120051417634
ECOL585035:0:Tno2120051417634
ECOL585055:0:Tno2120051417634
ECOL585056:2:Tno2120041417523
ECOL585057:0:Tno2120051417634
ECOL585397:0:Tno2120051417634
ECOL83334:0:Tno2221041518523
ECOLI:0:Tno2221051518634
ECOO157:0:Tno2221041518523
EFAE226185:3:Tyes---0-----
EFER585054:1:Tyes01211774161918
ELIT314225:0:Tyes1013--0--216521-
ERUM254945:0:Tyes243246--0249736312-
ERUM302409:0:Tno244245--0248731307-
ESP42895:1:Tyes2120041417523
FALN326424:0:Tyes---4---0-
FJOH376686:0:Tyes-2427-0--3206--
FMAG334413:1:Tyes0------113-
FNOD381764:0:Tyes1750--1679--0923-
FNUC190304:0:Tyes11580-468---420-
FPHI484022:1:Tyes-9225411180--0--
FRANT:0:Tno-9750829--196--
FSP106370:0:Tyes---4---0-
FSP1855:0:Tyes---0---4-
FSUC59374:0:Tyes0-----16541545-
FTUL351581:0:Tno-0874256--506--
FTUL393011:0:Tno-0771231--463--
FTUL393115:0:Tyes-9640819--191--
FTUL401614:0:Tyes-9661265670--0--
FTUL418136:0:Tno-4020615--1208--
FTUL458234:0:Tno-0793242--463--
GBET391165:0:Tyes4611497-0--1593158-
GFOR411154:0:Tyes-94-0--437--
GKAU235909:1:Tyes14111410-0--10551312-
GMET269799:1:Tyes0121-1816--1817478-
GOXY290633:5:Tyes1154--217--18790-
GSUL243231:0:Tyes1456896-1--0345-
GTHE420246:1:Tyes14401439-0--10921345-
GURA351605:0:Tyes10-85--841301-
GVIO251221:0:Tyes12253716-13851525-02951-
HACI382638:1:Tyes-1019----0323-
HARS204773:0:Tyes9199186191291504-
HAUR316274:2:Tyes0927-1357-----
HBUT415426:0:Tyes------0--
HCHE349521:0:Tyes8705--623
HDUC233412:0:Tyes6736746420681677653640639
HHAL349124:0:Tyes86-16681672--167301670
HHEP235279:0:Tyes-0----116248-
HINF281310:0:Tyes14135061051732
HINF374930:0:Tyes019158411371213
HINF71421:0:Tno14135061050932
HMAR272569:8:Tyes------0--
HMOD498761:0:Tyes559561-833--0963-
HMUK485914:1:Tyes------0--
HNEP81032:0:Tyes---2662--16200-
HPY:0:Tno-21----0434-
HPYL357544:1:Tyes-30----0421-
HPYL85963:0:Tno-20----0379-
HSAL478009:4:Tyes------0--
HSOM205914:1:Tyes01128922-4109126125
HSOM228400:0:Tno01586213-4567584583
HSP64091:2:Tno------0--
IHOS453591:0:Tyes------0--
ILOI283942:0:Tyes9805--623
JSP290400:1:Tyes2115--0--15641679-
JSP375286:0:Tyes0188889374894890891
KPNE272620:2:Tyes2120051417623
KRAD266940:2:Fyes-------0-
LBIF355278:2:Tyes------01136-
LBIF456481:2:Tno------01178-
LBOR355276:1:Tyes------01966-
LBOR355277:1:Tno------19060-
LCHO395495:0:Tyes431618471852-01853-1850
LINN272626:1:Tno0-----519--
LINT189518:1:Tyes------10210-
LINT267671:1:Tno------23260-
LINT363253:3:Tyes-240-653--10940-
LLAC272622:5:Tyes---0-----
LMON169963:0:Tno74-----5150-
LMON265669:0:Tyes7472----4930-
LPLA220668:0:Tyes--------0
LPNE272624:0:Tno-20204--5-2
LPNE297245:1:Fno-22551--0-3
LPNE297246:1:Fyes-20704--5-2
LPNE400673:0:Tno-21504--5-2
LSPH444177:1:Tyes2266--0--4312039-
LWEL386043:0:Tyes0-----427--
LXYL281090:0:Tyes-------0-
MABS561007:1:Tyes-0-----2088-
MACE188937:0:Tyes-0-------
MAER449447:0:Tyes6993048----28820-
MAQU351348:2:Tyes0183--265
MAVI243243:0:Tyes-------0-
MBAR269797:1:Tyes-0-------
MBOV233413:0:Tno0------1595-
MBOV410289:0:Tno0------1557-
MCAP243233:0:Tyes249802505250224414250121161045
MEXT419610:0:Tyes---43--4160-
MFLA265072:0:Tyes5381181811140819815816
MGIL350054:3:Tyes0-----3661822-
MHUN323259:0:Tyes-587----0--
MJAN243232:2:Tyes------0--
MKAN190192:0:Tyes------0--
MLAB410358:0:Tyes-0-------
MLEP272631:0:Tyes-------0-
MLOT266835:2:Tyes---429--33230-
MMAG342108:0:Tyes19061904218018981901-492-
MMAR267377:0:Tyes------0--
MMAR368407:0:Tyes-0-------
MMAR394221:0:Tyes1279--0--120322242225
MMAR402880:1:Tyes------0--
MMAR444158:0:Tyes------0--
MMAZ192952:0:Tyes-0-------
MPEN272633:0:Tyes-------0-
MPET420662:1:Tyes26726605-263623
MSME246196:0:Tyes2368------0-
MSP164756:1:Tno1890------0-
MSP164757:0:Tno1917------0-
MSP189918:2:Tyes1919------0-
MSP266779:0:Tyes-0-------
MSP266779:3:Tyes---874--01355-
MSP400668:0:Tyes081510--91312
MSP409:2:Tyes-0-948--7521437-
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