CANDIDATE ID: 195

CANDIDATE ID: 195

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9926861e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7326 (iscR) (b2531)
   Products of gene:
     - G7326-MONOMER (IscR transcriptional dual regulator)
       Regulatees:
        TU0-14811 (rnlA)
        TU0-8481 (nfuA)
        TU0-8480 (erpA)
        TU0-8482 (ydiU)
        TU0-8484 (napFDAGHBC)
        TU0-1881 (iscRSUA)
        TU0-2621 (sufABCDSE)
        TU00288 (hyaABCDEF)

- G7325 (iscS) (b2530)
   Products of gene:
     - G7325-MONOMER (cysteine desulfurase monomer)
     - CPLX0-248 (cysteine desulfurase)
       Reactions:
        a ThiI sulfur-carrier protein + L-cysteine  ->  a ThiI persulfide + L-alanine
         In pathways
         THISYN-PWY (thiamin biosynthesis I)
        L-cysteine + a protein L-cysteine  ->  a protein-S-sulfanylcysteine + L-alanine
         In pathways
         PWY0-1061 (superpathway of alanine biosynthesis)
         PWY0-1021 (alanine biosynthesis III)

- G7321 (yfgM) (b2513)
   Products of gene:
     - G7321-MONOMER (conserved protein)

- EG12401 (rlmN) (b2517)
   Products of gene:
     - EG12401-MONOMER (23S rRNA m2A2503 methyltransferase)
       Reactions:
        S-adenosyl-L-methionine + adenine2503 in 23S rRNA  ->  S-adenosyl-L-homocysteine + 2-methyladenine2503 in 23S rRNA

- EG12311 (iscX) (b2524)
   Products of gene:
     - EG12311-MONOMER (protein with possible role in iron-sulfur cluster biogenesis)

- EG10650 (ndk) (b2518)
   Products of gene:
     - NUCLEOSIDE-DIP-KIN-MONOMER (Ndk)
     - NUCLEOSIDE-DIP-KIN-CPLX (nucleoside diphosphate kinase)
       Reactions:
        a ribonucleoside diphosphate + ATP  ->  a ribonucleoside triphosphate + ADP
        UDP + ATP  ->  UTP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         PWY0-162 (pyrimidine ribonucleotides de novo biosynthesis)
         PWY-5687 (pyrimidine ribonucleotides interconversion)
        CDP + ATP  ->  CTP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         PWY0-162 (pyrimidine ribonucleotides de novo biosynthesis)
         PWY0-163 (salvage pathways of pyrimidine ribonucleotides)
         PWY-5687 (pyrimidine ribonucleotides interconversion)
        dUDP + ATP  ->  dUTP + ADP + H+
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        dCDP + ATP  ->  dCTP + ADP + H+
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        dTDP + ATP  ->  dTTP + ADP + H+
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        2'-deoxyadenosine-5'-diphosphate + ATP  ->  dATP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6126 (adenosine nucleotides de novo biosynthesis)
        2'-deoxyguanosine-5'-diphosphate + ATP  ->  dGTP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6125 (guanosine nucleotides de novo biosynthesis)
        GDP + ATP  ->  GTP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6125 (guanosine nucleotides de novo biosynthesis)
         PPGPPMET-PWY (ppGpp biosynthesis)

- EG10453 (hisS) (b2514)
   Products of gene:
     - HISS-MONOMER (histidyl-tRNA synthetase)
     - HISS-CPLX (histidyl-tRNA synthetase)
       Reactions:
        tRNAhis + L-histidine + ATP  ->  L-histidyl-tRNAhis + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)

- EG10370 (ispG) (b2515)
   Products of gene:
     - EG10370-MONOMER (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase)
       Reactions:
        2-C-methyl-D-erythritol-2,4-cyclodiphosphate + 2 a reduced ferredoxin  ->  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate + 2 an oxidized ferredoxin + H2O
         In pathways
         PWY-5121 (PWY-5121)
         PWY-6270 (PWY-6270)
         NONMEVIPP-PWY (methylerythritol phosphate pathway)

- EG10015 (rodZ) (b2516)
   Products of gene:
     - EG10015-MONOMER (rod shape-determining membrane protein)



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 127
Effective number of orgs (counting one per cluster within 468 clusters): 80

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317589
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329539
YPES386656 ncbi Yersinia pestis Pestoides F9
YPES377628 ncbi Yersinia pestis Nepal5169
YPES360102 ncbi Yersinia pestis Antiqua9
YPES349746 ncbi Yersinia pestis Angola9
YPES214092 ncbi Yersinia pestis CO929
YPES187410 ncbi Yersinia pestis KIM 109
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80819
VVUL216895 ncbi Vibrio vulnificus CMCP69
VVUL196600 ncbi Vibrio vulnificus YJ0169
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106339
VFIS312309 ncbi Vibrio fischeri ES1149
VCHO345073 ncbi Vibrio cholerae O3959
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169619
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252599
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT29
SSP94122 ncbi Shewanella sp. ANA-39
SSON300269 ncbi Shigella sonnei Ss0469
SSED425104 ncbi Shewanella sediminis HAW-EB39
SPRO399741 ncbi Serratia proteamaculans 5689
SPEA398579 ncbi Shewanella pealeana ATCC 7003459
SONE211586 ncbi Shewanella oneidensis MR-19
SLOI323850 ncbi Shewanella loihica PV-49
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SHAL458817 ncbi Shewanella halifaxensis HAW-EB49
SGLO343509 ncbi Sodalis glossinidius morsitans8
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4769
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B679
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91509
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT189
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty29
SDYS300267 ncbi Shigella dysenteriae Sd1979
SDEN318161 ncbi Shewanella denitrificans OS2179
SDEG203122 ncbi Saccharophagus degradans 2-408
SBOY300268 ncbi Shigella boydii Sb2279
SBAL402882 ncbi Shewanella baltica OS1859
SBAL399599 ncbi Shewanella baltica OS1959
RSOL267608 ncbi Ralstonia solanacearum GMI10008
RMET266264 ncbi Ralstonia metallidurans CH349
REUT381666 ncbi Ralstonia eutropha H169
REUT264198 ncbi Ralstonia eutropha JMP1349
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30009
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a9
PSTU379731 ncbi Pseudomonas stutzeri A15019
PSP56811 Psychrobacter sp.8
PPUT76869 ncbi Pseudomonas putida GB-19
PPUT351746 ncbi Pseudomonas putida F19
PPUT160488 ncbi Pseudomonas putida KT24409
PPRO298386 ncbi Photobacterium profundum SS99
PMUL272843 ncbi Pasteurella multocida multocida Pm708
PMEN399739 ncbi Pseudomonas mendocina ymp9
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO19
PING357804 ncbi Psychromonas ingrahamii 379
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1258
PFLU220664 ncbi Pseudomonas fluorescens Pf-59
PFLU216595 ncbi Pseudomonas fluorescens SBW259
PFLU205922 ncbi Pseudomonas fluorescens Pf0-19
PENT384676 ncbi Pseudomonas entomophila L489
PATL342610 ncbi Pseudoalteromonas atlantica T6c8
PAER208964 ncbi Pseudomonas aeruginosa PAO19
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA149
NMEN374833 ncbi Neisseria meningitidis 0534428
NMEN272831 ncbi Neisseria meningitidis FAM188
NMEN122587 ncbi Neisseria meningitidis Z24918
NMEN122586 ncbi Neisseria meningitidis MC588
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E9
MSP400668 ncbi Marinomonas sp. MWYL18
MPET420662 ncbi Methylibium petroleiphilum PM18
MFLA265072 ncbi Methylobacillus flagellatus KT9
MCAP243233 ncbi Methylococcus capsulatus Bath9
MAQU351348 ncbi Marinobacter aquaeolei VT88
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785789
JSP375286 ncbi Janthinobacterium sp. Marseille9
ILOI283942 ncbi Idiomarina loihiensis L2TR8
HSOM228400 ncbi Haemophilus somnus 23368
HSOM205914 ncbi Haemophilus somnus 129PT8
HINF71421 ncbi Haemophilus influenzae Rd KW209
HINF374930 ncbi Haemophilus influenzae PittEE9
HINF281310 ncbi Haemophilus influenzae 86-028NP9
HDUC233412 ncbi Haemophilus ducreyi 35000HP9
HCHE349521 ncbi Hahella chejuensis KCTC 23968
HARS204773 ncbi Herminiimonas arsenicoxydans8
ESP42895 Enterobacter sp.9
EFER585054 ncbi Escherichia fergusonii ATCC 354699
ECOO157 ncbi Escherichia coli O157:H7 EDL9339
ECOL83334 Escherichia coli O157:H79
ECOL585397 ncbi Escherichia coli ED1a9
ECOL585057 ncbi Escherichia coli IAI399
ECOL585056 ncbi Escherichia coli UMN0269
ECOL585055 ncbi Escherichia coli 559899
ECOL585035 ncbi Escherichia coli S889
ECOL585034 ncbi Escherichia coli IAI19
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL469008 ncbi Escherichia coli BL21(DE3)9
ECOL439855 ncbi Escherichia coli SMS-3-59
ECOL413997 ncbi Escherichia coli B str. REL6069
ECOL409438 ncbi Escherichia coli SE119
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI899
ECOL362663 ncbi Escherichia coli 5369
ECOL331111 ncbi Escherichia coli E24377A9
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
ECOL199310 ncbi Escherichia coli CFT0739
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10439
DARO159087 ncbi Dechloromonas aromatica RCB9
CVIO243365 ncbi Chromobacterium violaceum ATCC 124728
CSAL290398 ncbi Chromohalobacter salexigens DSM 30438
CPSY167879 ncbi Colwellia psychrerythraea 34H9
CJAP155077 Cellvibrio japonicus8
BVIE269482 ncbi Burkholderia vietnamiensis G48
BSP36773 Burkholderia sp.8
BCEN331272 ncbi Burkholderia cenocepacia HI24248
BCEN331271 ncbi Burkholderia cenocepacia AU 10548
BAMB398577 ncbi Burkholderia ambifaria MC40-68
BAMB339670 ncbi Burkholderia ambifaria AMMD8
ASP76114 ncbi Aromatoleum aromaticum EbN19
ASP62977 ncbi Acinetobacter sp. ADP19
ASP62928 ncbi Azoarcus sp. BH729
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4498
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL039
APLE416269 ncbi Actinobacillus pleuropneumoniae L209
AHYD196024 Aeromonas hydrophila dhakensis8
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232709
ABOR393595 ncbi Alcanivorax borkumensis SK28


Names of the homologs of the genes in the group in each of these orgs
  G7326   G7325   G7321   EG12401   EG12311   EG10650   EG10453   EG10370   EG10015   
YPSE349747 YPSIP31758_1167YPSIP31758_1168YPSIP31758_1188YPSIP31758_1183YPSIP31758_1174YPSIP31758_1182YPSIP31758_1187YPSIP31758_1186YPSIP31758_1185
YPSE273123 YPTB2860YPTB2859YPTB2839YPTB2844YPTB2853YPTB2845YPTB2840YPTB2841YPTB2842
YPES386656 YPDSF_2242YPDSF_2241YPDSF_2222YPDSF_2227YPDSF_2235YPDSF_2228YPDSF_2223YPDSF_2224YPDSF_2225
YPES377628 YPN_1240YPN_1241YPN_1261YPN_1256YPN_1247YPN_1255YPN_1260YPN_1259YPN_1258
YPES360102 YPA_2338YPA_2337YPA_2317YPA_2322YPA_2331YPA_2323YPA_2318YPA_2319YPA_2320
YPES349746 YPANGOLA_A0436YPANGOLA_A0435YPANGOLA_A0416YPANGOLA_A0421YPANGOLA_A0429YPANGOLA_A0422YPANGOLA_A0417YPANGOLA_A0418YPANGOLA_A0419
YPES214092 YPO2897YPO2896YPO2877YPO2882YPO2890YPO2883YPO2878YPO2879YPO2880
YPES187410 Y1333Y1334Y1355Y1350Y1341Y1349Y1354Y1353Y1352
YENT393305 YE1056YE1057YE1075YE1070YE1063YE1069YE1074YE1073YE1072
VVUL216895 VV1_0439VV1_0438VV1_0425VV1_0429VV1_0432VV1_0430VV1_0426VV1_0427VV1_0428
VVUL196600 VV0754VV0755VV0768VV0764VV0761VV0763VV0767VV0766VV0765
VPAR223926 VP0595VP0596VP0610VP0605VP0602VP0604VP0609VP0608VP0607
VFIS312309 VF0616VF0617VF0631VF0626VF0623VF0625VF0630VF0629VF0628
VCHO345073 VC0395_A0276VC0395_A0277VC0395_A0290VC0395_A0286VC0395_A0283VC0395_A0285VC0395_A0289VC0395_A0288VC0395_A0287
VCHO VC0747VC0748VC0761VC0757VC0754VC0756VC0760VC0759VC0758
TDEN292415 TBD_1163TBD_1164TBD_0596TBD_0591TBD_1170TBD_0590TBD_0595TBD_0594TBD_0593
STYP99287 STM2544STM2543STM2521STM2525STM2537STM2526STM2522STM2523STM2524
SSP94122 SHEWANA3_2281SHEWANA3_2280SHEWANA3_1231SHEWANA3_1226SHEWANA3_2273SHEWANA3_2272SHEWANA3_1230SHEWANA3_1229SHEWANA3_1228
SSON300269 SSO_2613SSO_2612SSO_2595SSO_2599SSO_2606SSO_2600SSO_2596SSO_2597SSO_2598
SSED425104 SSED_2872SSED_2871SSED_1434SSED_1429SSED_2863SSED_2862SSED_1433SSED_1432SSED_1431
SPRO399741 SPRO_3628SPRO_3627SPRO_3607SPRO_3612SPRO_3621SPRO_3613SPRO_3608SPRO_3609SPRO_3610
SPEA398579 SPEA_1487SPEA_1488SPEA_1307SPEA_1302SPEA_1496SPEA_1498SPEA_1306SPEA_1305SPEA_1304
SONE211586 SO_2263SO_2264SO_3310SO_3315SO_2271SO_2274SO_3311SO_3312SO_3313
SLOI323850 SHEW_2318SHEW_2317SHEW_1292SHEW_1287SHEW_2311SHEW_2310SHEW_1291SHEW_1290SHEW_1289
SHIGELLA S2750YFHOS2731YFGBYFHJNDKHISSGCPEYFGA
SHAL458817 SHAL_1571SHAL_1572SHAL_1369SHAL_1364SHAL_1578SHAL_1580SHAL_1368SHAL_1367SHAL_1366
SGLO343509 SG1770SG1769SG1758SG1763SG1764SG1759SG1760SG1761
SFLE373384 SFV_2579SFV_2578SFV_2560SFV_2564SFV_2572SFV_2565SFV_2561SFV_2562SFV_2563
SFLE198214 AAN44077.1AAN44076.1AAN44059.1AAN44063.1AAN44070.1AAN44064.1AAN44060.1AAN44061.1AAN44062.1
SENT454169 SEHA_C2806SEHA_C2805SEHA_C2778SEHA_C2783SEHA_C2799SEHA_C2784SEHA_C2779SEHA_C2781SEHA_C2782
SENT321314 SCH_2538SCH_2537SCH_2518SCH_2522SCH_2532SCH_2523SCH_2519SCH_2520SCH_2521
SENT295319 SPA0322SPA0323SPA0346SPA0342SPA0329SPA0341SPA0345SPA0344SPA0343
SENT220341 STY2790STY2789STY2766STY2770STY2783STY2771STY2767STY2768STY2769
SENT209261 T0312T0313T0335T0331T0319T0330T0334T0333T0332
SDYS300267 SDY_2727SDY_2726SDY_2709SDY_2713SDY_2720SDY_2714SDY_2710SDY_2711SDY_2712
SDEN318161 SDEN_1457SDEN_1458SDEN_1258SDEN_1253SDEN_0277SDEN_2390SDEN_1257SDEN_1256SDEN_1255
SDEG203122 SDE_1412SDE_1413SDE_1436SDE_1431SDE_1430SDE_1435SDE_1434SDE_1433
SBOY300268 SBO_2555SBO_2554SBO_2537SBO_2541SBO_2548SBO_2542SBO_2538SBO_2539SBO_2540
SBAL402882 SHEW185_2387SHEW185_2386SHEW185_3003SHEW185_3008SHEW185_2379SHEW185_2377SHEW185_3004SHEW185_3005SHEW185_3006
SBAL399599 SBAL195_2503SBAL195_2502SBAL195_3146SBAL195_3151SBAL195_2495SBAL195_2493SBAL195_3147SBAL195_3148SBAL195_3149
RSOL267608 RSC1018RSC1019RSC1217RSC1212RSC1026RSC1211RSC1216RSC1214
RMET266264 RMET_1024RMET_1025RMET_2104RMET_2109RMET_1031RMET_2110RMET_2105RMET_2106RMET_2107
REUT381666 H16_A1157H16_A1158H16_A2362H16_A2367H16_A1165H16_A2368H16_A2363H16_A2364H16_A2365
REUT264198 REUT_A1057REUT_A1058REUT_A2084REUT_A2089REUT_A1065REUT_A2090REUT_A2085REUT_A2086REUT_A2087
PSYR223283 PSPTO_1422PSPTO_1423PSPTO_1436PSPTO_1431PSPTO_1429PSPTO_1430PSPTO_1435PSPTO_1434PSPTO_1433
PSYR205918 PSYR_1236PSYR_1237PSYR_1250PSYR_1245PSYR_1243PSYR_1244PSYR_1249PSYR_1248PSYR_1247
PSTU379731 PST_3043PST_3042PST_3029PST_3034PST_3036PST_3035PST_3030PST_3031PST_3032
PSP56811 PSYCPRWF_1628PSYCPRWF_1629PSYCPRWF_1905PSYCPRWF_0641PSYCPRWF_1906PSYCPRWF_1901PSYCPRWF_1902PSYCPRWF_1903
PPUT76869 PPUTGB1_0884PPUTGB1_0885PPUTGB1_0898PPUTGB1_0893PPUTGB1_0891PPUTGB1_0892PPUTGB1_0897PPUTGB1_0896PPUTGB1_0895
PPUT351746 PPUT_0871PPUT_0872PPUT_0885PPUT_0880PPUT_0878PPUT_0879PPUT_0884PPUT_0883PPUT_0882
PPUT160488 PP_0841PP_0842PP_0855PP_0850PP_0848PP_0849PP_0854PP_0853PP_0852
PPRO298386 PBPRA0749PBPRA0750PBPRA0765PBPRA0760PBPRA0756PBPRA0759PBPRA0764PBPRA0763PBPRA0762
PMUL272843 PM0317PM0318PM2012PM2007PM1028PM2011PM2010PM2009
PMEN399739 PMEN_3512PMEN_3511PMEN_3498PMEN_3503PMEN_3505PMEN_3504PMEN_3499PMEN_3500PMEN_3501
PLUM243265 PLU3284PLU3283PLU1378PLU1373PLU3277PLU1372PLU1377PLU1376PLU1375
PING357804 PING_1323PING_1324PING_1170PING_1165PING_1330PING_3326PING_1169PING_1168PING_1167
PHAL326442 PSHAA2672PSHAA2671PSHAB0136PSHAB0141PSHAB0142PSHAB0137PSHAB0138PSHAB0139
PFLU220664 PFL_4966PFL_4965PFL_4952PFL_4957PFL_4959PFL_4958PFL_4953PFL_4954PFL_4955
PFLU216595 PFLU5069PFLU5068PFLU5055PFLU5060PFLU5062PFLU5061PFLU5056PFLU5057PFLU5058
PFLU205922 PFL_4613PFL_4612PFL_4599PFL_4604PFL_4606PFL_4605PFL_4600PFL_4601PFL_4602
PENT384676 PSEEN1009PSEEN1010PSEEN1023PSEEN1018PSEEN1016PSEEN1017PSEEN1022PSEEN1021PSEEN1020
PATL342610 PATL_1237PATL_1238PATL_3124PATL_3129PATL_3130PATL_3125PATL_3126PATL_3127
PAER208964 PA3815PA3814PA3801PA3806PA3808PA3807PA3802PA3803PA3804
PAER208963 PA14_14710PA14_14730PA14_14900PA14_14830PA14_14810PA14_14820PA14_14890PA14_14880PA14_14860
NMEN374833 NMCC_1291NMCC_1293NMCC_0811NMCC_1221NMCC_1056NMCC_1220NMCC_0812NMCC_1223
NMEN272831 NMC1314NMC1315NMC0793NMC1245NMC1076NMC1244NMC0794NMC1247
NMEN122587 NMA1593NMA1594NMA1064NMA1522NMA1347NMA1521NMA1065NMA1524
NMEN122586 NMB_1378NMB_1379NMB_0853NMB_1308NMB_1175NMB_1307NMB_0854NMB_1310
MSUC221988 MS1727MS1726MS1921MS1916MS1719MS0668MS1920MS1919MS1918
MSP400668 MMWYL1_1343MMWYL1_1351MMWYL1_1358MMWYL1_1353MMWYL1_1352MMWYL1_1357MMWYL1_1356MMWYL1_1355
MPET420662 MPE_A2263MPE_A2262MPE_A1994MPE_A1999MPE_A2000MPE_A1995MPE_A1996MPE_A1997
MFLA265072 MFLA_0810MFLA_0808MFLA_1616MFLA_1623MFLA_1920MFLA_1624MFLA_1619MFLA_1620MFLA_1621
MCAP243233 MCA_2883MCA_0247MCA_2890MCA_2887MCA_2825MCA_2886MCA_2889MCA_2483MCA_1363
MAQU351348 MAQU_1121MAQU_1122MAQU_1129MAQU_1124MAQU_1123MAQU_1128MAQU_1127MAQU_1126
KPNE272620 GKPORF_B2197GKPORF_B2196GKPORF_B2176GKPORF_B2181GKPORF_B2190GKPORF_B2182GKPORF_B2177GKPORF_B2178GKPORF_B2179
JSP375286 MMA_1251MMA_1252MMA_2125MMA_2130MMA_1258MMA_2131MMA_2126MMA_2127MMA_2128
ILOI283942 IL2041IL2040IL2032IL2037IL2038IL2033IL2034IL2035
HSOM228400 HSM_0153HSM_0154HSM_0731HSM_0364HSM_0712HSM_0730HSM_0729HSM_0728
HSOM205914 HS_0280HS_0281HS_0406HS_1198HS_0387HS_0405HS_0404HS_0403
HINF71421 HI_0379HI_0378HI_0370HI_0365HI_0371HI_0876HI_0369HI_0368HI_0367
HINF374930 CGSHIEE_01110CGSHIEE_01115CGSHIEE_01155CGSHIEE_01185CGSHIEE_01150CGSHIEE_07650CGSHIEE_01160CGSHIEE_01170CGSHIEE_01175
HINF281310 NTHI0499NTHI0498NTHI0490NTHI0485NTHI0491NTHI1039NTHI0489NTHI0488NTHI0487
HDUC233412 HD_1080HD_1082HD_1040HD_0319HD_1089HD_1053HD_1039HD_1037HD_1036
HCHE349521 HCH_04462HCH_04461HCH_04454HCH_04459HCH_04460HCH_04455HCH_04456HCH_04457
HARS204773 HEAR2240HEAR2239HEAR1266HEAR1261HEAR2233HEAR1260HEAR1265HEAR1264
ESP42895 ENT638_3028ENT638_3027ENT638_3007ENT638_3011ENT638_3021ENT638_3012ENT638_3008ENT638_3009ENT638_3010
EFER585054 EFER_0641EFER_0642EFER_0659EFER_0655EFER_0648EFER_0654EFER_0658EFER_0657EFER_0656
ECOO157 Z3798YFHOZ3776YFGBYFHJNDKHISSGCPEYFGA
ECOL83334 ECS3397ECS3396ECS3375ECS3379ECS3390ECS3380ECS3376ECS3377ECS3378
ECOL585397 ECED1_2962ECED1_2961ECED1_2944ECED1_2948ECED1_2955ECED1_2949ECED1_2945ECED1_2946ECED1_2947
ECOL585057 ECIAI39_2732ECIAI39_2731ECIAI39_2714ECIAI39_2718ECIAI39_2725ECIAI39_2719ECIAI39_2715ECIAI39_2716ECIAI39_2717
ECOL585056 ECUMN_2851ECUMN_2850ECUMN_2833ECUMN_2837ECUMN_2844ECUMN_2838ECUMN_2834ECUMN_2835ECUMN_2836
ECOL585055 EC55989_2816EC55989_2815EC55989_2798EC55989_2802EC55989_2809EC55989_2803EC55989_2799EC55989_2800EC55989_2801
ECOL585035 ECS88_2707ECS88_2706ECS88_2689ECS88_2693ECS88_2700ECS88_2694ECS88_2690ECS88_2691ECS88_2692
ECOL585034 ECIAI1_2583ECIAI1_2582ECIAI1_2565ECIAI1_2569ECIAI1_2576ECIAI1_2570ECIAI1_2566ECIAI1_2567ECIAI1_2568
ECOL481805 ECOLC_1146ECOLC_1147ECOLC_1164ECOLC_1160ECOLC_1153ECOLC_1159ECOLC_1163ECOLC_1162ECOLC_1161
ECOL469008 ECBD_1153ECBD_1154ECBD_1173ECBD_1169ECBD_1160ECBD_1168ECBD_1172ECBD_1171ECBD_1170
ECOL439855 ECSMS35_2684ECSMS35_2683ECSMS35_2665ECSMS35_2669ECSMS35_2676ECSMS35_2670ECSMS35_2666ECSMS35_2667ECSMS35_2668
ECOL413997 ECB_02423ECB_02422ECB_02405ECB_02409ECB_02416ECB_02410ECB_02406ECB_02407ECB_02408
ECOL409438 ECSE_2817ECSE_2816ECSE_2799ECSE_2803ECSE_2810ECSE_2804ECSE_2800ECSE_2801ECSE_2802
ECOL405955 APECO1_3994APECO1_3995APECO1_4011APECO1_4007APECO1_4006APECO1_4010APECO1_4009APECO1_4008
ECOL364106 UTI89_C2853UTI89_C2852UTI89_C2834UTI89_C2838UTI89_C2846UTI89_C2840UTI89_C2835UTI89_C2836UTI89_C2837
ECOL362663 ECP_2536ECP_2535ECP_2518ECP_2522ECP_2529ECP_2523ECP_2519ECP_2520ECP_2521
ECOL331111 ECE24377A_2816ECE24377A_2815ECE24377A_2797ECE24377A_2801ECE24377A_2808ECE24377A_2802ECE24377A_2798ECE24377A_2799ECE24377A_2800
ECOL316407 ECK2528:JW2515:B2531ECK2527:JW2514:B2530ECK2509:JW2497:B2513ECK2513:JW2501:B2517ECK2521:JW2508:B2524ECK2514:JW2502:B2518ECK2510:JW2498:B2514ECK2511:JW2499:B2515ECK2512:JW2500:B2516
ECOL199310 C3057C3056C3035C3039C3049C3041C3036C3037C3038
ECAR218491 ECA3238ECA3237ECA3218ECA3223ECA3231ECA3224ECA3219ECA3220ECA3221
DARO159087 DARO_1948DARO_1950DARO_2983DARO_2988DARO_1956DARO_2989DARO_2984DARO_2985DARO_2986
CVIO243365 CV_1095CV_1094CV_3536CV_3541CV_1087CV_3542CV_3537CV_3539
CSAL290398 CSAL_2847CSAL_2848CSAL_2856CSAL_2851CSAL_2850CSAL_2855CSAL_2854CSAL_2853
CPSY167879 CPS_1131CPS_1132CPS_4250CPS_4255CPS_4263CPS_4256CPS_4251CPS_4252CPS_4253
CJAP155077 CJA_1465CJA_1466CJA_1483CJA_1478CJA_1477CJA_1482CJA_1481CJA_1480
BVIE269482 BCEP1808_2206BCEP1808_2205BCEP1808_1737BCEP1808_1741BCEP1808_2199BCEP1808_1742BCEP1808_1738BCEP1808_1740
BSP36773 BCEP18194_A5433BCEP18194_B2412BCEP18194_A5111BCEP18194_A5115BCEP18194_A5426BCEP18194_A5116BCEP18194_A5112BCEP18194_A5114
BCEN331272 BCEN2424_2127BCEN2424_2126BCEN2424_1810BCEN2424_1814BCEN2424_2120BCEN2424_1815BCEN2424_1811BCEN2424_1813
BCEN331271 BCEN_5950BCEN_5951BCEN_6269BCEN_6265BCEN_5957BCEN_6264BCEN_6268BCEN_6266
BAMB398577 BAMMC406_2037BAMMC406_2036BAMMC406_1721BAMMC406_1725BAMMC406_2030BAMMC406_1726BAMMC406_1722BAMMC406_1724
BAMB339670 BAMB_2164BAMB_2163BAMB_1748BAMB_1752BAMB_2157BAMB_1753BAMB_1749BAMB_1751
ASP76114 EBA6404EBA6401EBA1259EBA1268EBA6395EBB37EBA1260EBA1261EBA1262
ASP62977 ACIAD1405ACIAD1404ACIAD0563ACIAD0557ACIAD0555ACIAD0556ACIAD0562ACIAD0561ACIAD0560
ASP62928 AZO2018AZO2016AZO0929AZO0924AZO2010AZO0923AZO0928AZO0927AZO0926
ASAL382245 ASA_2613ASA_2612ASA_2597ASA_2602ASA_2603ASA_2598ASA_2599ASA_2600
APLE434271 APJL_0942APJL_0941APJL_1195APJL_1285APJL_0933APJL_0367APJL_1196APJL_1198APJL_1199
APLE416269 APL_0932APL_0931APL_1174APL_1274APL_0923APL_0351APL_1175APL_1176APL_1177
AHYD196024 AHA_1746AHA_1747AHA_1761AHA_1756AHA_1755AHA_1760AHA_1759AHA_1758
AFER243159 AFE_2368AFE_2367AFE_1155AFE_1160AFE_2361AFE_1161AFE_1156AFE_1157AFE_1158
ABOR393595 ABO_1873ABO_1872ABO_1858ABO_1863ABO_1864ABO_1859ABO_1860ABO_1861


Organism features enriched in list (features available for 121 out of the 127 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0001631792
Arrangment:Pairs 0.000609836112
Disease:Bubonic_plague 0.000072366
Disease:Dysentery 0.000072366
Disease:Gastroenteritis 0.00001641013
Disease:Meningitis_and_septicemia 0.001783244
Disease:Plant_rot 0.008764933
Disease:chronic_bronchitis 0.008764933
Endospores:No 0.000249428211
GC_Content_Range4:0-40 3.872e-178213
GC_Content_Range4:40-60 1.909e-1686224
GC_Content_Range7:30-40 4.131e-118166
GC_Content_Range7:40-50 0.001467236117
GC_Content_Range7:50-60 7.536e-1250107
Genome_Size_Range5:0-2 1.315e-134155
Genome_Size_Range5:2-4 1.502e-620197
Genome_Size_Range5:4-6 2.305e-1778184
Genome_Size_Range5:6-10 0.00071981947
Genome_Size_Range9:1-2 2.454e-104128
Genome_Size_Range9:2-3 0.001817614120
Genome_Size_Range9:3-4 0.0007363677
Genome_Size_Range9:4-5 4.147e-84196
Genome_Size_Range9:5-6 4.035e-73788
Genome_Size_Range9:6-8 0.00009771838
Gram_Stain:Gram_Neg 8.377e-23113333
Habitat:Multiple 0.000801451178
Habitat:Terrestrial 0.0051567131
Motility:No 4.077e-116151
Motility:Yes 7.395e-1085267
Optimal_temp.:35-37 0.0012241813
Oxygen_Req:Aerobic 0.003594927185
Oxygen_Req:Anaerobic 1.720e-74102
Oxygen_Req:Facultative 3.923e-1883201
Pathogenic_in:Human 0.000352660213
Pathogenic_in:No 0.000128230226
Shape:Coccus 0.0002979682
Shape:Rod 3.644e-13105347
Temp._range:Mesophilic 0.0014488109473
Temp._range:Psychrophilic 0.003114269
Temp._range:Thermophilic 0.0021774135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 109
Effective number of orgs (counting one per cluster within 468 clusters): 94

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 71
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSOL273057 ncbi Sulfolobus solfataricus P21
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE1313 Streptococcus pneumoniae1
SMAR399550 ncbi Staphylothermus marinus F11
SARE391037 ncbi Salinispora arenicola CNS-2051
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
PTOR263820 ncbi Picrophilus torridus DSM 97901
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
NSP35761 Nocardioides sp.1
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1350
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K11
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7326   G7325   G7321   EG12401   EG12311   EG10650   EG10453   EG10370   EG10015   
UURE95667
UURE95664
UPAR505682
TWHI218496 TW0559
TWHI203267 TW186
TVOL273116
TPEN368408
TPAL243276 TP_0446
TKOD69014
TDEN243275 TDE_1265
TACI273075
STOK273063 ST0280
SSUI391295 SSU05_0278
SSOL273057 SSO0230
SPYO370554 MGAS10750_SPY1931
SPYO370553 MGAS2096_SPY1846
SPYO370551 MGAS9429_SPY1825
SPYO319701 M28_SPY1823
SPYO293653 M5005_SPY1814
SPYO286636 M6_SPY1833
SPYO198466 SPYM3_1815
SPYO193567 SPS1813
SPYO186103 SPYM18_2189
SPYO160490 SPY2157
SPNE487213 SPT_2132
SPNE1313 SPJ_2144
SMAR399550 SMAR_0828
SARE391037 SARE_1304
SACI330779 SACI_0696
RSAL288705 RSAL33209_0641
PTOR263820 PTO1283
PRUM264731 GFRORF2858
PPEN278197 PEPE_1116
PISL384616
PHOR70601
PFUR186497 PF0931
PAST100379
PARS340102
PAER178306
PACN267747 PPA1506
PABY272844 PAB1489
NSP35761 NOCA_3202
NPHA348780 NP3666A
MTHE187420 MTH258
MSYN262723
MSED399549
MPUL272635
MPNE272634
MPEN272633 MYPE9400
MMYC272632
MMOB267748
MMAZ192952 MM0109
MMAR444158 MMARC6_0670
MMAR426368
MMAR402880 MMARC5_1390
MMAR368407 MEMAR_1914
MMAR267377 MMP0283
MLAB410358 MLAB_0266
MKAN190192 MK1591
MJAN243232 MJ_1265
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797 MBAR_A3201
MART243272
MAEO419665
MACE188937 MA2718
LXYL281090 LXX12200
LSAK314315 LSA0863
LREU557436 LREU_1848
LMES203120 LEUM_1310
LLAC272623 L0342
LJOH257314 LJ_1392
LHEL405566 LHV_1013
LGAS324831 LGAS_0859
LDEL390333 LDB0888
LDEL321956 LBUL_0812
LCAS321967 LSEI_1527
LBRE387344 LVIS_0735
LACI272621 LBA0935
KRAD266940 KRAD_1429
IHOS453591 IGNI_0725
HWAL362976
HSP64091 VNG1160G
HSAL478009 OE2667F
HMUK485914 HMUK_2624
HMAR272569 RRNAC0106
HBUT415426 HBUT_0549
CSUL444179
CMIC443906 CMM_2156
CMIC31964 CMS1849
CMET456442 MBOO_0356
CMAQ397948
CKOR374847
BXEN266265 BXE_B1444
BTUR314724
BHER314723
BGAR290434
BBUR224326
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_1404
APER272557 APE2377
AAUR290340 AAUR_1546


Organism features enriched in list (features available for 102 out of the 109 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.005703111112
Arrangment:Singles 0.001604763286
Disease:Wide_range_of_infections 1.700e-71011
Endospores:No 5.735e-2280211
Endospores:Yes 0.0002757153
GC_Content_Range4:0-40 0.000085654213
GC_Content_Range4:60-100 0.001281914145
GC_Content_Range7:0-30 0.00006661947
GC_Content_Range7:50-60 0.009776511107
GC_Content_Range7:60-70 0.000351611134
Genome_Size_Range5:0-2 8.980e-1864155
Genome_Size_Range5:4-6 7.062e-117184
Genome_Size_Range5:6-10 0.0008612147
Genome_Size_Range9:0-1 6.800e-91827
Genome_Size_Range9:1-2 3.962e-946128
Genome_Size_Range9:3-4 0.0057142677
Genome_Size_Range9:4-5 0.0000217496
Genome_Size_Range9:5-6 0.0000171388
Gram_Stain:Gram_Neg 1.163e-1621333
Habitat:Multiple 0.001269319178
Habitat:Specialized 0.00041221953
Motility:No 0.000035243151
Optimal_temp.:- 0.000029127257
Optimal_temp.:100 0.005225833
Optimal_temp.:35-40 0.005225833
Optimal_temp.:42 0.005225833
Optimal_temp.:85 0.000892044
Oxygen_Req:Aerobic 0.002411121185
Oxygen_Req:Anaerobic 0.000175831102
Oxygen_Req:Facultative 0.007477845201
Pathogenic_in:Animal 0.0001670266
Pathogenic_in:Human 0.005858227213
Pathogenic_in:No 0.001958752226
Pathogenic_in:Swine 0.003705145
Salinity:Extreme_halophilic 0.002194957
Salinity:Non-halophilic 0.003819028106
Shape:Coccus 0.00001282982
Shape:Irregular_coccus 4.751e-91417
Shape:Rod 2.059e-1229347
Shape:Sphere 3.562e-91519
Temp._range:Hyperthermophilic 2.112e-81623
Temp._range:Mesophilic 0.003351973473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 4
Effective number of orgs (counting one per cluster within 468 clusters): 3

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden 0.00381903376
ERUM302409 ncbi Ehrlichia ruminantium Gardel 0.00402313406
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 23270 0.004345312999
HDUC233412 ncbi Haemophilus ducreyi 35000HP 0.006402913569


Names of the homologs of the genes in the group in each of these orgs
  G7326   G7325   G7321   EG12401   EG12311   EG10650   EG10453   EG10370   EG10015   
ERUM254945 ERWE_CDS_04280ERWE_CDS_04310ERWE_CDS_01970ERWE_CDS_09080ERWE_CDS_07360ERWE_CDS_04950
ERUM302409 ERGA_CDS_04240ERGA_CDS_04250ERGA_CDS_01920ERGA_CDS_08980ERGA_CDS_07280ERGA_CDS_04850
AFER243159 AFE_2368AFE_2367AFE_1155AFE_1160AFE_2361AFE_1161AFE_1156AFE_1157AFE_1158
HDUC233412 HD_1080HD_1082HD_1040HD_0319HD_1089HD_1053HD_1039HD_1037HD_1036


Organism features enriched in list (features available for 4 out of the 4 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:African_heartwater 0.006861111
Disease:Genital_ulcer_disease 0.006861111
Disease:Heartwater 0.006861111
Pathogenic_in:Ruminant 0.000105723
Shape:Pleomorphic_coccus 0.000035422



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181220.6479
AST-PWY (arginine degradation II (AST pathway))120840.6015
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761020.5852
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911020.5450
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951030.5434
GLYCOCAT-PWY (glycogen degradation I)2461160.5368
GLUTDEG-PWY (glutamate degradation II)194990.5115
GALACTITOLCAT-PWY (galactitol degradation)73560.5094
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81590.5033
GLUCONSUPER-PWY (D-gluconate degradation)2291070.4985
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50440.4958
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001230.4932
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251050.4905
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491110.4900
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491110.4900
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911200.4846
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961210.4840
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901190.4783
PWY-5386 (methylglyoxal degradation I)3051210.4689
PWY-5148 (acyl-CoA hydrolysis)2271020.4614
PWY-1269 (CMP-KDO biosynthesis I)3251240.4606
PWY-5913 (TCA cycle variation IV)3011190.4596
PWY-46 (putrescine biosynthesis III)138750.4497
LIPASYN-PWY (phospholipases)212950.4355
PWY-4041 (γ-glutamyl cycle)2791110.4337
GLUCARDEG-PWY (D-glucarate degradation I)152770.4269
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481240.4257
PWY-5918 (heme biosynthesis I)2721080.4222
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149750.4168
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391210.4151
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861100.4134
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4129
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91550.4112
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94560.4101
PWY-6196 (serine racemization)102580.4006
PWY0-1182 (trehalose degradation II (trehalase))70460.4003



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7325   G7321   EG12401   EG12311   EG10650   EG10453   EG10370   EG10015   
G73260.999920.9988050.9986190.9994360.9988490.9992520.9987470.998853
G73250.9988730.9987940.9994430.9989010.9991030.9988660.998958
G73210.999720.9987350.999640.9998560.9996820.999741
EG124010.9988930.9997460.9996720.9996490.999774
EG123110.9991120.9986560.9987290.998848
EG106500.9995720.9993260.999652
EG104530.999740.99976
EG103700.999748
EG10015



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PAIRWISE BLAST SCORES:

  G7326   G7325   G7321   EG12401   EG12311   EG10650   EG10453   EG10370   EG10015   
G73260.0f0--------
G7325-0.0f0-------
G7321--0.0f0------
EG12401---0.0f0-----
EG12311----0.0f0----
EG10650-----0.0f0---
EG10453------0.0f0--
EG10370-------0.0f0-
EG10015--------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10015 EG10370 EG10453 EG10650 EG12401 G7321 (centered at EG10015)
EG12311 (centered at EG12311)
G7325 G7326 (centered at G7326)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7326   G7325   G7321   EG12401   EG12311   EG10650   EG10453   EG10370   EG10015   
337/623326/623182/623408/623140/623424/623403/623407/623163/623
AAEO224324:0:Tyes-435-214--01001-
AAUR290340:2:Tyes-------0-
AAVE397945:0:Tyes1006100761-05-3
ABAC204669:0:Tyes76-109503418733951-
ABAU360910:0:Tyes018358397840836--
ABOR393595:0:Tyes151405-6123
ABUT367737:0:Tyes2107551-0-232904595-
ACAU438753:0:Tyes---0-3443-3885-
ACEL351607:0:Tyes---788-0-774-
ACRY349163:8:Tyes---1698-299210
ADEH290397:0:Tyes-0-1051710499233391-
AEHR187272:0:Tyes12530624620-619623-622
AFER243159:0:Tyes119711960511906123
AFUL224325:0:Tyes-0---570---
AHYD196024:0:Tyes011510-9141312
ALAI441768:0:Tyes---0--567--
AMAR234826:0:Tyes262261--0614-313-
AMAR329726:9:Tyes31282480---35434820-
AMET293826:0:Tyes9495-419--0320-
ANAE240017:0:Tyes---4---0-
AORE350688:0:Tyes235234-0--27488-
APER272557:0:Tyes-----0---
APHA212042:0:Tyes-523--81310330306-
APLE416269:0:Tyes5835828229205740823824825
APLE434271:0:Tno5525518078975430808810811
ASAL382245:5:Tyes151404-5123
ASP1667:3:Tyes-------0-
ASP232721:2:Tyes93593461-05--
ASP62928:0:Tyes112411226111160543
ASP62977:0:Tyes8198187201654
ASP76114:2:Tyes303730350530296123
AVAR240292:3:Tyes27014---3004-0-
BABO262698:0:Tno0--------
BABO262698:1:Tno---0-599-1617-
BAMB339670:3:Tno4284270442151-3
BAMB398577:3:Tno3233220431651-3
BAMY326423:0:Tyes904--0-531908779-
BANT260799:0:Tno28472846-2271-028522735-
BANT261594:2:Tno28442843-2244-028492726-
BANT568206:2:Tyes39493948-0-241039543826-
BANT592021:2:Tno30113010-2402-030162887-
BAPH198804:0:Tyes-3003060--21-
BAPH372461:0:Tyes-2122180--1--
BBAC264462:0:Tyes-417-0-2863343--
BBAC360095:0:Tyes---784-0---
BBRO257310:0:Tyes018938977898894--
BCAN483179:0:Tno0--------
BCAN483179:1:Tno---0-605-1676-
BCEN331271:0:Tno013303267325329-327
BCEN331272:3:Tyes3173160431051-3
BCER226900:1:Tyes2813--2290-028182697-
BCER288681:0:Tno27262725-2210-027312614-
BCER315749:1:Tyes17741773-1192-017831673-
BCER405917:1:Tyes26862685-2132-026912565-
BCER572264:1:Tno29022901-2367-029072782-
BCIC186490:0:Tyes-0---132-
BCLA66692:0:Tyes8----3190132-
BFRA272559:1:Tyes---0---3114-
BFRA295405:0:Tno---0---3345-
BHAL272558:0:Tyes89-1259-4070150-
BHEN283166:0:Tyes---0-504---
BJAP224911:0:Fyes---0-3615-417-
BLIC279010:0:Tyes10531052-0-6031057864-
BLON206672:0:Tyes---1391---0-
BMAL243160:1:Tno3253240431851--
BMAL320388:1:Tno3733720436651--
BMAL320389:1:Tyes3753740436851--
BMEL224914:0:Tno0--------
BMEL224914:1:Tno---1632-1016-0-
BMEL359391:1:Tno---0-583-1561-
BOVI236:0:Tyes0--------
BOVI236:1:Tyes---0-545-1464-
BPAR257311:0:Tno017847877788785--
BPER257313:0:Tyes013513557356352--
BPET94624:0:Tyes7667655175904--
BPSE272560:1:Tyes7737725176604--
BPSE320372:1:Tno3223210431551--
BPSE320373:1:Tno3933920438651--
BPUM315750:0:Tyes905904-0-519-750-
BQUI283165:0:Tyes---0-408---
BSP107806:2:Tyes-3123180--21-
BSP36773:1:Tyes-0-------
BSP36773:2:Tyes334-0432751-3
BSP376:0:Tyes---0-2924-274-
BSUB:0:Tyes12161215-0-7251221966-
BSUI204722:0:Tyes0--------
BSUI204722:1:Tyes---0-590-1643-
BSUI470137:0:Tno91------0-
BSUI470137:1:Tno---0-619---
BTHA271848:1:Tno013543507349353--
BTHE226186:0:Tyes---1887---0-
BTHU281309:1:Tno27172716-2194-027232606-
BTHU412694:1:Tno24892488-2018-024942384-
BTRI382640:1:Tyes---0-720---
BVIE269482:7:Tyes4674660446051-3
BWEI315730:4:Tyes27192718-2172-027242608-
BXEN266265:1:Tyes-0-------
CABO218497:0:Tyes-----0-280-
CACE272562:1:Tyes0550-51---121-
CAULO:0:Tyes1754--0-1587-722-
CBEI290402:0:Tyes6400-51--44099-
CBLO203907:0:Tyes-2---10--
CBLO291272:0:Tno-4-2-301-
CBOT36826:1:Tno01370-1305--18571224-
CBOT441770:0:Tyes01273-1147--18411063-
CBOT441771:0:Tno01192-1116--16991032-
CBOT441772:1:Tno01341-1277--18111197-
CBOT498213:1:Tno01378-1245--18871162-
CBOT508765:1:Tyes132133-183--0231-
CBOT515621:2:Tyes01554-1492--20621405-
CBOT536232:0:Tno01497-1432--20621347-
CBUR227377:1:Tyes-0114118-124115-116
CBUR360115:1:Tno-0105110-116106-107
CBUR434922:2:Tno-098103-10999-100
CCAV227941:1:Tyes-----0-299-
CCHL340177:0:Tyes---624-01270146-
CCON360104:2:Tyes---1620-0600316-
CCUR360105:0:Tyes---0-15759631208-
CDES477974:0:Tyes1439778---0776505-
CDIF272563:1:Tyes01-1324--1482870-
CDIP257309:0:Tyes------0139-
CEFF196164:0:Fyes---151--0147-
CFEL264202:1:Tyes-----309-0-
CFET360106:0:Tyes---1536-0-730-
CGLU196627:0:Tyes------0330-
CHOM360107:1:Tyes0--823-587-105-
CHUT269798:0:Tyes0--2877-3395-1968-
CHYD246194:0:Tyes19301929-1229-019351513-
CJAP155077:0:Tyes011813-12171615
CJEI306537:0:Tyes---131--0127-
CJEJ192222:0:Tyes---1359-0-349-
CJEJ195099:0:Tno---1456-0-394-
CJEJ354242:2:Tyes---1300-0-335-
CJEJ360109:0:Tyes---719-281-0-
CJEJ407148:0:Tno---1350-0-359-
CKLU431943:1:Tyes2300-286--2029338-
CMET456442:0:Tyes-0-------
CMIC31964:2:Tyes-------0-
CMIC443906:2:Tyes-------0-
CMUR243161:1:Tyes-----454-0-
CNOV386415:0:Tyes436435-393--0293-
CPEL335992:0:Tyes222----201-0-
CPER195102:1:Tyes9493-48--2470-
CPER195103:0:Tno9291-47--2340-
CPER289380:3:Tyes9291-47--2310-
CPHY357809:0:Tyes12582332-1915--02047-
CPNE115711:1:Tyes-----0-252-
CPNE115713:0:Tno-----249-0-
CPNE138677:0:Tno-----252-0-
CPNE182082:0:Tno-----265-0-
CPRO264201:0:Fyes---333-017380-
CPSY167879:0:Tyes013027303230403033302830293030
CRUT413404:0:Tyes187186-112502763-
CSAL290398:0:Tyes0194-3876
CSP501479:7:Fyes---0-----
CSP501479:8:Fyes319----0-457-
CSP78:2:Tyes2408--0-2360-770-
CTEP194439:0:Tyes-1733-932-17400--
CTET212717:0:Tyes01-160---205-
CTRA471472:0:Tyes-----456-0-
CTRA471473:0:Tno-----456-0-
CVES412965:0:Tyes171170-111102513-
CVIO243365:0:Tyes8725172522025232518-2520
DARO159087:0:Tyes021035104081041103610371038
DDES207559:0:Tyes6433119-2998-144802230-
DETH243164:0:Tyes-235---3780354-
DGEO319795:1:Tyes0--134-1183---
DHAF138119:0:Tyes22672266-2531-022722377-
DNOD246195:0:Tyes--40--3-2
DOLE96561:0:Tyes16041588-1656-197201399-
DPSY177439:2:Tyes-1712-1417-14300621-
DRAD243230:3:Tyes1681--549-2079-0-
DRED349161:0:Tyes655656-1602-06481854-
DSHI398580:5:Tyes454--2149-167-0-
DSP216389:0:Tyes1368----3670344-
DSP255470:0:Tno1453209---2790256-
DVUL882:1:Tyes0134-2363-17932824811-
ECAN269484:0:Tyes220219--0702520--
ECAR218491:0:Tyes201905136123
ECHA205920:0:Tyes01--262463---
ECOL199310:0:Tno222104146123
ECOL316407:0:Tno191804125123
ECOL331111:6:Tno191804115123
ECOL362663:0:Tno181704115123
ECOL364106:1:Tno191804126123
ECOL405955:2:Tyes171604-5123
ECOL409438:6:Tyes181704115123
ECOL413997:0:Tno181704115123
ECOL439855:4:Tno191804115123
ECOL469008:0:Tno012016715191817
ECOL481805:0:Tno011814713171615
ECOL585034:0:Tno212005146134
ECOL585035:0:Tno212005146134
ECOL585055:0:Tno212005146134
ECOL585056:2:Tno212004145123
ECOL585057:0:Tno212005146134
ECOL585397:0:Tno212005146134
ECOL83334:0:Tno222104155123
ECOLI:0:Tno222105156134
ECOO157:0:Tno222104155123
EFAE226185:3:Tyes---66--0--
EFER585054:1:Tyes012117716201918
ELIT314225:0:Tyes1013--0-216-521-
ERUM254945:0:Tyes243246--0736560312-
ERUM302409:0:Tno244245--0731557307-
ESP42895:1:Tyes212004145123
FALN326424:0:Tyes---4---0-
FJOH376686:0:Tyes-2427-0-3206---
FMAG334413:1:Tyes0------113-
FNOD381764:0:Tyes1750--1679-01436923-
FNUC190304:0:Tyes11580-468--240420-
FPHI484022:1:Tyes-9225411180-0416--
FRANT:0:Tno-1086111940-3070--
FSP106370:0:Tyes---4---0-
FSP1855:0:Tyes---0---4-
FSUC59374:0:Tyes0----1654-1545-
FTUL351581:0:Tno-0874256-506956--
FTUL393011:0:Tno-0771231-463845--
FTUL393115:0:Tyes-1074110929-3010--
FTUL401614:0:Tyes-9661265670-01375--
FTUL418136:0:Tno-514112727-13200--
FTUL458234:0:Tno-0793242-463870--
GBET391165:0:Tyes4611497-0-1593159158-
GFOR411154:0:Tyes-94-0-437---
GKAU235909:1:Tyes14111410-0-105514191312-
GMET269799:1:Tyes0121-1816-18171051478-
GOXY290633:5:Tyes1155--218-188001-
GSUL243231:0:Tyes1456896-1-0546345-
GTHE420246:1:Tyes14401439-0-109214461345-
GURA351605:0:Tyes10-85-843851301-
GVIO251221:0:Tyes12253716-138515250-2951-
HACI382638:1:Tyes-1019---0-323-
HARS204773:0:Tyes91991861912054-
HAUR316274:2:Tyes0927-1357-----
HBUT415426:0:Tyes-----0---
HCHE349521:0:Tyes8705-6123
HDUC233412:0:Tyes6736746420681653641640639
HHAL349124:0:Tyes86-16681672-1673166901670
HHEP235279:0:Tyes-0---116-248-
HINF281310:0:Tyes1413506517432
HINF374930:0:Tyes0191581137101213
HINF71421:0:Tno1413506509432
HMAR272569:8:Tyes-----0---
HMOD498761:0:Tyes559561-833-0544963-
HMUK485914:1:Tyes-----0---
HNEP81032:0:Tyes---2662-1620-0-
HPY:0:Tno-21---0-434-
HPYL357544:1:Tyes-30---0-421-
HPYL85963:0:Tno-20---0-379-
HSAL478009:4:Tyes-----0---
HSOM205914:1:Tyes01128922-109127126125
HSOM228400:0:Tno01586213-567585584583
HSP64091:2:Tno-----0---
IHOS453591:0:Tyes-----0---
ILOI283942:0:Tyes9805-6123
JSP290400:1:Tyes2115--0-1564-1679-
JSP375286:0:Tyes018888937894889890891
KPNE272620:2:Tyes212005146123
KRAD266940:2:Fyes-------0-
LACI272621:0:Tyes------0--
LBIF355278:2:Tyes-----0-1136-
LBIF456481:2:Tno-----0-1178-
LBOR355276:1:Tyes-----0-1966-
LBOR355277:1:Tno-----1906-0-
LBRE387344:2:Tyes------0--
LCAS321967:1:Tyes------0--
LCHO395495:0:Tyes031218431848-18491844-1846
LDEL321956:0:Tyes------0--
LDEL390333:0:Tyes------0--
LGAS324831:0:Tyes------0--
LHEL405566:0:Tyes------0--
LINN272626:1:Tno0----5195--
LINT189518:1:Tyes-----1021-0-
LINT267671:1:Tno-----2326-0-
LINT363253:3:Tyes-240-653-10949590-
LJOH257314:0:Tyes------0--
LLAC272622:5:Tyes---0--1921--
LLAC272623:0:Tyes------0--
LMES203120:1:Tyes------0--
LMON169963:0:Tno74----515790-
LMON265669:0:Tyes7472---493790-
LPLA220668:0:Tyes------0-292
LPNE272624:0:Tno-20204-51-2
LPNE297245:1:Fno-22551-04-3
LPNE297246:1:Fyes-20704-51-2
LPNE400673:0:Tno-21504-51-2
LREU557436:0:Tyes------0--
LSAK314315:0:Tyes------0--
LSPH444177:1:Tyes2266--0-43122812039-
LWEL386043:0:Tyes0----4275--
LXYL281090:0:Tyes-------0-
MABS561007:1:Tyes-0----17892088-
MACE188937:0:Tyes-0-------
MAER449447:0:Tyes33615710---554402662-
MAQU351348:2:Tyes0183-2765
MAVI243243:0:Tyes------0261-
MBAR269797:1:Tyes-0-------
MBOV233413:0:Tno0-----13091595-
MBOV410289:0:Tno0-----12681557-
MCAP243233:0:Tyes249802505250224412501250421161045
MEXT419610:0:Tyes---43-416-0-
MFLA265072:0:Tyes208088151111816811812813
MGIL350054:3:Tyes0----36615481822-
MHUN323259:0:Tyes-587---0---
MJAN243232:2:Tyes-----0---
MKAN190192:0:Tyes-----0---
MLAB410358:0:Tyes-0-------
MLEP272631:0:Tyes------0679-
MLOT266835:2:Tyes---429-3323-0-
MMAG342108:0:Tyes1906190421801898--492-
MMAR267377:0:Tyes-----0---
MMAR368407:0:Tyes-0-------
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