CANDIDATE ID: 200

CANDIDATE ID: 200

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9942404e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    3.7500850e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7500 (xdhD) (b2881)
   Products of gene:
     - G7500-MONOMER (putative oxidoreductase; possible component of selenate reductase with possible role in purine salvage)
     - CPLX0-1841 (putative selenate reductase)
       Reactions:
        selenate + a reduced electron acceptor  ->  selenite + an oxidized electron acceptor + H2O

- G7494 (yqeB) (b2875)
   Products of gene:
     - G7494-MONOMER (conserved protein with NAD(P)-binding Rossman fold)

- G7487 (xdhC) (b2868)
   Products of gene:
     - G7487-MONOMER (putative xanthine dehydrogenase, Fe-S subunit)
     - CPLX0-761 (xanthine dehydrogenase)
       Reactions:
        xanthine + NAD+ + H2O  ->  urate + NADH + H+
         In pathways
         URSIN-PWY (URSIN-PWY)
         P165-PWY (P165-PWY)
         PWY-5695 (PWY-5695)
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         PWY-6237 (PWY-6237)
         P164-PWY (P164-PWY)
         PWY-5497 (PWY-5497)
         PWY-6538 (PWY-6538)
         PWY-6353 (PWY-6353)
         PWY-5044 (PWY-5044)
        hypoxanthine + H2O  ->  xanthine + 2 H+
         In pathways
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         P164-PWY (P164-PWY)

- G7486 (xdhB) (b2867)
   Products of gene:
     - G7486-MONOMER (putative xanthine dehydrogenase subunit, FAD-binding domain)
     - CPLX0-761 (xanthine dehydrogenase)
       Reactions:
        xanthine + NAD+ + H2O  ->  urate + NADH + H+
         In pathways
         URSIN-PWY (URSIN-PWY)
         P165-PWY (P165-PWY)
         PWY-5695 (PWY-5695)
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         PWY-6237 (PWY-6237)
         P164-PWY (P164-PWY)
         PWY-5497 (PWY-5497)
         PWY-6538 (PWY-6538)
         PWY-6353 (PWY-6353)
         PWY-5044 (PWY-5044)
        hypoxanthine + H2O  ->  xanthine + 2 H+
         In pathways
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         P164-PWY (P164-PWY)

- G7485 (xdhA) (b2866)
   Products of gene:
     - G7485-MONOMER (xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain)
     - CPLX0-761 (xanthine dehydrogenase)
       Reactions:
        xanthine + NAD+ + H2O  ->  urate + NADH + H+
         In pathways
         URSIN-PWY (URSIN-PWY)
         P165-PWY (P165-PWY)
         PWY-5695 (PWY-5695)
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         PWY-6237 (PWY-6237)
         P164-PWY (P164-PWY)
         PWY-5497 (PWY-5497)
         PWY-6538 (PWY-6538)
         PWY-6353 (PWY-6353)
         PWY-5044 (PWY-5044)
        hypoxanthine + H2O  ->  xanthine + 2 H+
         In pathways
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         P164-PWY (P164-PWY)

- G6157 (yagT) (b0286)
   Products of gene:
     - G6157-MONOMER (aldehyde ferredoxin oxidoreductase, Fe-S subunit)
     - CPLX0-7805 (aldehyde ferredoxin oxidoreductase)
       Reactions:
        an aldehyde[periplasmic space] + 2 oxidized ferredoxin[periplasmic space] + H2O[periplasmic space]  =  an acid[periplasmic space] + 2 reduced ferredoxin[periplasmic space] + 2 H+[periplasmic space]

- G6156 (yagS) (b0285)
   Products of gene:
     - G6156-MONOMER (aldehyde ferredoxin oxidoreductase, FAD-binding subunit)
     - CPLX0-7805 (aldehyde ferredoxin oxidoreductase)
       Reactions:
        an aldehyde[periplasmic space] + 2 oxidized ferredoxin[periplasmic space] + H2O[periplasmic space]  =  an acid[periplasmic space] + 2 reduced ferredoxin[periplasmic space] + 2 H+[periplasmic space]

- G6155 (yagR) (b0284)
   Products of gene:
     - G6155-MONOMER (aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit)
     - CPLX0-7805 (aldehyde ferredoxin oxidoreductase)
       Reactions:
        an aldehyde[periplasmic space] + 2 oxidized ferredoxin[periplasmic space] + H2O[periplasmic space]  =  an acid[periplasmic space] + 2 reduced ferredoxin[periplasmic space] + 2 H+[periplasmic space]



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 143
Effective number of orgs (counting one per cluster within 468 clusters): 112

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
XAUT78245 ncbi Xanthobacter autotrophicus Py28
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
TROS309801 ncbi Thermomicrobium roseum DSM 51598
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen7
STOK273063 ncbi Sulfolobus tokodaii 78
SSP644076 Silicibacter sp. TrichCH4B7
SSP292414 ncbi Ruegeria sp. TM10407
SSOL273057 ncbi Sulfolobus solfataricus P28
SPRO399741 ncbi Serratia proteamaculans 5687
SMEL266834 ncbi Sinorhizobium meliloti 10218
SMED366394 ncbi Sinorhizobium medicae WSM4198
SMAR399550 ncbi Staphylothermus marinus F17
SLAC55218 Ruegeria lacuscaerulensis8
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB8
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23388
SCO ncbi Streptomyces coelicolor A3(2)8
SBOY300268 ncbi Shigella boydii Sb2277
SAVE227882 ncbi Streptomyces avermitilis MA-46807
SARE391037 ncbi Salinispora arenicola CNS-2057
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6398
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99418
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170258
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170298
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.18
RSP357808 ncbi Roseiflexus sp. RS-18
RSP101510 ncbi Rhodococcus jostii RHA18
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111707
RPOM246200 ncbi Ruegeria pomeroyi DSS-38
RPAL316058 ncbi Rhodopseudomonas palustris HaA28
RPAL316057 ncbi Rhodopseudomonas palustris BisB58
RPAL316056 ncbi Rhodopseudomonas palustris BisB188
RPAL316055 ncbi Rhodopseudomonas palustris BisA538
RPAL258594 ncbi Rhodopseudomonas palustris CGA0098
RMET266264 ncbi Ralstonia metallidurans CH347
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38418
REUT381666 ncbi Ralstonia eutropha H168
REUT264198 ncbi Ralstonia eutropha JMP1348
RDEN375451 ncbi Roseobacter denitrificans OCh 1147
RCAS383372 ncbi Roseiflexus castenholzii DSM 139418
PTHE370438 ncbi Pelotomaculum thermopropionicum SI8
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30008
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15018
PSP56811 Psychrobacter sp.7
PSP296591 ncbi Polaromonas sp. JS6668
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PNAP365044 ncbi Polaromonas naphthalenivorans CJ27
PMOB403833 ncbi Petrotoga mobilis SJ957
PMEN399739 ncbi Pseudomonas mendocina ymp8
PFLU216595 ncbi Pseudomonas fluorescens SBW258
PFLU205922 ncbi Pseudomonas fluorescens Pf0-18
PCRY335284 ncbi Psychrobacter cryohalolentis K58
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
PAER178306 ncbi Pyrobaculum aerophilum IM27
OCAR504832 ncbi Oligotropha carboxidovorans OM58
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2557
NSP35761 Nocardioides sp.8
NHAM323097 ncbi Nitrobacter hamburgensis X148
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-18
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra7
MTUB336982 ncbi Mycobacterium tuberculosis F117
MTHE264732 ncbi Moorella thermoacetica ATCC 390738
MTBRV ncbi Mycobacterium tuberculosis H37Rv7
MSP409 Methylobacterium sp.8
MSP266779 ncbi Chelativorans sp. BNC18
MSP189918 ncbi Mycobacterium sp. KMS8
MSP164757 ncbi Mycobacterium sp. JLS8
MSP164756 ncbi Mycobacterium sp. MCS8
MSME246196 ncbi Mycobacterium smegmatis MC2 1558
MSED399549 ncbi Metallosphaera sedula DSM 53488
MMAG342108 ncbi Magnetospirillum magneticum AMB-18
MLOT266835 ncbi Mesorhizobium loti MAFF3030998
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK8
MEXT419610 ncbi Methylobacterium extorquens PA18
JSP375286 ncbi Janthinobacterium sp. Marseille7
JSP290400 ncbi Jannaschia sp. CCS18
HNEP81032 Hyphomonas neptunium7
HMOD498761 ncbi Heliobacterium modesticaldum Ice18
GMET269799 ncbi Geobacter metallireducens GS-158
GKAU235909 ncbi Geobacillus kaustophilus HTA4267
GFOR411154 ncbi Gramella forsetii KT08037
FSP1855 Frankia sp. EAN1pec8
FALN326424 ncbi Frankia alni ACN14a7
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0737
DSHI398580 ncbi Dinoroseobacter shibae DFL 128
DRED349161 ncbi Desulfotomaculum reducens MI-17
DRAD243230 ncbi Deinococcus radiodurans R18
DPSY177439 ncbi Desulfotalea psychrophila LSv548
DHAF138119 ncbi Desulfitobacterium hafniense Y518
CSP501479 Citreicella sp. SE458
CSAL290398 ncbi Chromohalobacter salexigens DSM 30438
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6577
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B7
CBOT441771 ncbi Clostridium botulinum A str. Hall7
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193977
CBOT36826 Clostridium botulinum A7
BXEN266265 ncbi Burkholderia xenovorans LB4008
BVIE269482 ncbi Burkholderia vietnamiensis G48
BSP376 Bradyrhizobium sp.8
BPER257313 ncbi Bordetella pertussis Tohama I8
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1108
BHAL272558 ncbi Bacillus halodurans C-1257
BCLA66692 ncbi Bacillus clausii KSM-K167
BCEN331272 ncbi Burkholderia cenocepacia HI24248
BCEN331271 ncbi Burkholderia cenocepacia AU 10548
BBRO257310 ncbi Bordetella bronchiseptica RB508
BAMB398577 ncbi Burkholderia ambifaria MC40-68
BAMB339670 ncbi Burkholderia ambifaria AMMD8
ASP76114 ncbi Aromatoleum aromaticum EbN18
ASP1667 Arthrobacter sp.8
APER272557 ncbi Aeropyrum pernix K18
AORE350688 ncbi Alkaliphilus oremlandii OhILAs8
AMET293826 ncbi Alkaliphilus metalliredigens QYMF8
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232707
ACRY349163 ncbi Acidiphilium cryptum JF-58
ACEL351607 ncbi Acidothermus cellulolyticus 11B8
ACAU438753 ncbi Azorhizobium caulinodans ORS 5718
ABAU360910 ncbi Bordetella avium 197N8
AAVE397945 ncbi Acidovorax citrulli AAC00-18


Names of the homologs of the genes in the group in each of these orgs
  G7500   G7494   G7487   G7486   G7485   G6157   G6156   G6155   
XCAM487884 XCC-B100_1437XCC-B100_3252XCC-B100_3253XCC-B100_1436XCC-B100_1434XCC-B100_1435XCC-B100_1436
XCAM316273 XCAORF_3090XCAORF_1308XCAORF_1307XCAORF_3091XCAORF_3093XCAORF_3092XCAORF_3091
XCAM314565 XC_1388XC_3156XC_3157XC_1387XC_1385XC_1386XC_3780
XCAM190485 XCC2726XCC1093XCC1092XCC2727XCC2729XCC2728XCC2727
XAXO190486 XAC2891XAC1189XAC1188XAC2893XAC2895XAC2894XAC2893
XAUT78245 XAUT_1289XAUT_0125XAUT_1289XAUT_3759XAUT_1289XAUT_4210XAUT_0647XAUT_1289
VEIS391735 VEIS_5001VEIS_4534VEIS_4544VEIS_5002VEIS_5001VEIS_4544VEIS_4542
TROS309801 TRD_A0069TRD_A0236TRD_A0776TRD_1208TRD_A0069TRD_A0776TRD_A0566TRD_A0400
SWOL335541 SWOL_1817SWOL_0029SWOL_1818SWOL_1819SWOL_1817SWOL_1818SWOL_1817
STOK273063 ST1781ST0121ST0561ST1783ST1781ST1782ST1783ST2339
SSP644076 SCH4B_1343SCH4B_2006SCH4B_2009SCH4B_2919SCH4B_2920SCH4B_0781SCH4B_1343
SSP292414 TM1040_1765TM1040_0497TM1040_1766TM1040_2704TM1040_1705TM1040_3147TM1040_1765
SSOL273057 SSO2639SSO1292SSO2433SSO2636SSO2639SSO2433SSO2636SSO3239
SPRO399741 SPRO_2301SPRO_2302SPRO_2492SPRO_2300SPRO_2301SPRO_2314SPRO_2301
SMEL266834 SMB20132SMC00518SMB20131SMB20130SMB20132SMA2349SMA2351SMA2353
SMED366394 SMED_4003SMED_1482SMED_4004SMED_4005SMED_4003SMED_5356SMED_4734SMED_5354
SMAR399550 SMAR_0357SMAR_0033SMAR_0356SMAR_0355SMAR_0357SMAR_0356SMAR_0357
SLAC55218 SL1157_0406SL1157_3074SL1157_0407SL1157_0408SL1157_0131SL1157_3382SL1157_0408SL1157_0406
SFUM335543 SFUM_2510SFUM_1316SFUM_2011SFUM_2010SFUM_2012SFUM_2509SFUM_2511SFUM_2510
SERY405948 SACE_1162SACE_0535SACE_4018SACE_1264SACE_4872SACE_4466SACE_4467SACE_4468
SCO SCO4972SCO1131SCO2941SCO6170SCO2940SCO1134SCO0690SCO1132
SBOY300268 SBO_3119SBO_3109SBO_3117SBO_3118SBO_3119SBO_3118SBO_3119
SAVE227882 SAV1536SAV5136SAV2069SAV2067SAV1540SAV7383SAV7384
SARE391037 SARE_0201SARE_0200SARE_0203SARE_0201SARE_0203SARE_0202SARE_0201
SACI330779 SACI_2271SACI_1021SACI_2270SACI_0916SACI_2271SACI_0917SACI_2269SACI_1009
RXYL266117 RXYL_0112RXYL_0117RXYL_2837RXYL_2836RXYL_2839RXYL_1873RXYL_1871RXYL_1872
RSPH349102 RSPH17025_3206RSPH17025_0331RSPH17025_1142RSPH17025_3948RSPH17025_3947RSPH17025_3204RSPH17025_3205RSPH17025_3206
RSPH349101 RSPH17029_1523RSPH17029_0586RSPH17029_1524RSPH17029_3237RSPH17029_3945RSPH17029_3943RSPH17029_3944RSPH17029_3945
RSPH272943 RSP_2877RSP_1935RSP_2878RSP_3554RSP_3206RSP_3204RSP_3205RSP_3206
RSP357808 ROSERS_1142ROSERS_0501ROSERS_0340ROSERS_0342ROSERS_2447ROSERS_0340ROSERS_0342ROSERS_1142
RSP101510 RHA1_RO04506RHA1_RO03494RHA1_RO04977RHA1_RO04975RHA1_RO05013RHA1_RO00133RHA1_RO00134RHA1_RO00135
RRUB269796 RRU_A0966RRU_A0970RRU_A0965RRU_A0967RRU_A0965RRU_A0967RRU_A0966
RPOM246200 SPO_0830SPO_2394SPO_A0413SPO_A0412SPO_0830SPO_2398SPO_2399SPO_A0414
RPAL316058 RPB_3957RPB_0955RPB_4413RPB_3677RPB_4416RPB_4513RPB_4512RPB_4511
RPAL316057 RPD_1524RPD_1059RPD_1525RPD_1523RPD_1524RPD_0916RPD_0915RPD_0914
RPAL316056 RPC_1014RPC_4316RPC_1015RPC_1013RPC_1014RPC_1133RPC_1132RPC_1131
RPAL316055 RPE_0590RPE_4368RPE_0591RPE_3215RPE_3213RPE_4568RPE_0589RPE_3213
RPAL258594 RPA0671RPA4634RPA0670RPA3802RPA0671RPA3803RPA0672RPA0671
RMET266264 RMET_0364RMET_0359RMET_0365RMET_0893RMET_0364RMET_0365RMET_0363
RLEG216596 PRL80025PRL120299PRL80024RL3570PRL80025PRL120302PRL120301PRL120300
REUT381666 H16_A3371H16_A0433H16_B0745H16_A3369H16_A3371H16_B1896H16_B1897H16_B1898
REUT264198 REUT_A3076REUT_C6439REUT_B3596REUT_A3074REUT_A3076REUT_B4505REUT_B4506REUT_B4507
RDEN375451 RD1_1533RD1_2976RD1_2974RD1_1532RD1_1533RD1_2974RD1_A0087
RCAS383372 RCAS_3983RCAS_1256RCAS_0843RCAS_0841RCAS_3983RCAS_0843RCAS_0841RCAS_3983
PTHE370438 PTH_1538PTH_1534PTH_1579PTH_1540PTH_1538PTH_1579PTH_1540PTH_1538
PSYR223283 PSPTO_3661PSPTO_3662PSPTO_4652PSPTO_3660PSPTO_2863PSPTO_2861PSPTO_2862PSPTO_2863
PSYR205918 PSYR_1814PSYR_1813PSYR_4285PSYR_1815PSYR_4285PSYR_4284PSYR_2390
PSTU379731 PST_3082PST_0922PST_0924PST_3081PST_3082PST_0924PST_0925PST_0926
PSP56811 PSYCPRWF_1009PSYCPRWF_1010PSYCPRWF_1007PSYCPRWF_1009PSYCPRWF_1007PSYCPRWF_1008PSYCPRWF_1009
PSP296591 BPRO_3394BPRO_0572BPRO_0578BPRO_1481BPRO_3394BPRO_0578BPRO_0576BPRO_0577
PPUT351746 PPUT_1589PPUT_1588PPUT_2435PPUT_1590PPUT_2435PPUT_2434PPUT_2433
PPUT160488 PP_4279PP_4280PP_3308PP_4278PP_3308PP_3309PP_3310
PNAP365044 PNAP_2695PNAP_2697PNAP_2695PNAP_1035PNAP_2695PNAP_2695PNAP_2695
PMOB403833 PMOB_1732PMOB_1734PMOB_1735PMOB_1738PMOB_1732PMOB_1739PMOB_1732
PMEN399739 PMEN_2752PMEN_2753PMEN_2347PMEN_2751PMEN_2752PMEN_2347PMEN_2346PMEN_2345
PFLU216595 PFLU4593PFLU4594PFLU5350PFLU4592PFLU4593PFLU5350PFLU5349PFLU5348
PFLU205922 PFL_1796PFL_1795PFL_2109PFL_1797PFL_2107PFL_2109PFL_2108PFL_2107
PCRY335284 PCRYO_1807PCRYO_1806PCRYO_1809PCRYO_1140PCRYO_1141PCRYO_1809PCRYO_1808PCRYO_1807
PAER208964 PA1523PA1522PA1931PA1524PA1931PA1932PA1933
PAER208963 PA14_44740PA14_44760PA14_39540PA14_44710PA14_39540PA14_39530PA14_39520
PAER178306 PAE1935PAE2669PAE2477PAE1939PAE1935PAE2477PAE1935
OCAR504832 OCAR_7367OCAR_5485OCAR_5618OCAR_7366OCAR_5616OCAR_5618OCAR_5617OCAR_5616
NWIN323098 NWI_1079NWI_2200NWI_2205NWI_2204NWI_1079NWI_2205NWI_2204
NSP35761 NOCA_1634NOCA_0633NOCA_4272NOCA_3968NOCA_1634NOCA_0229NOCA_1489NOCA_4271
NHAM323097 NHAM_1307NHAM_2602NHAM_1039NHAM_1455NHAM_1454NHAM_1039NHAM_1040NHAM_1041
MVAN350058 MVAN_5281MVAN_5182MVAN_5186MVAN_5185MVAN_5281MVAN_2076MVAN_2077MVAN_2075
MTUB419947 MRA_0385MRA_0383MRA_0384MRA_0382MRA_0383MRA_0384MRA_0382
MTUB336982 TBFG_10381TBFG_10379TBFG_10380TBFG_10378TBFG_10379TBFG_10380TBFG_10378
MTHE264732 MOTH_1960MOTH_2002MOTH_1958MOTH_1959MOTH_1960MOTH_1961MOTH_1959MOTH_1999
MTBRV RV0376CRV0374CRV0375CRV0373CRV0374CRV0375CRV0373C
MSP409 M446_4793M446_3532M446_2669M446_0552M446_1983M446_0292M446_0293M446_0294
MSP266779 MESO_0474MESO_1293MESO_0058MESO_2833MESO_4559MESO_0582MESO_0581MESO_0580
MSP189918 MKMS_4688MKMS_0499MKMS_4691MKMS_4690MKMS_0502MKMS_0449MKMS_0448MKMS_0447
MSP164757 MJLS_4983MJLS_0477MJLS_4986MJLS_4985MJLS_0480MJLS_0426MJLS_0425MJLS_0424
MSP164756 MMCS_4600MMCS_0488MMCS_4603MMCS_4602MMCS_0491MMCS_0439MMCS_0438MMCS_0437
MSME246196 MSMEG_1291MSMEG_0743MSMEG_5883MSMEG_5882MSMEG_1291MSMEG_0686MSMEG_0685MSMEG_0684
MSED399549 MSED_0297MSED_1387MSED_0298MSED_0299MSED_0297MSED_0298MSED_0609MSED_0297
MMAG342108 AMB1483AMB0850AMB2882AMB1484AMB2020AMB2882AMB2021AMB2020
MLOT266835 MLL2287MLR0092MLL2289MLL2291MLL4880MLR1925MLR1926MLR1927
MGIL350054 MFLV_1573MFLV_1574MFLV_1570MFLV_1571MFLV_1573MFLV_0282MFLV_0283MFLV_0284
MEXT419610 MEXT_1728MEXT_1056MEXT_0835MEXT_1291MEXT_1728MEXT_3665MEXT_3666MEXT_3667
JSP375286 MMA_0506MMA_0764MMA_0776MMA_0507MMA_0774MMA_0766MMA_0506
JSP290400 JANN_3460JANN_2092JANN_1763JANN_2949JANN_2947JANN_2096JANN_2949JANN_1765
HNEP81032 HNE_1070HNE_1073HNE_1072HNE_1071HNE_1073HNE_1072HNE_1071
HMOD498761 HM1_2648HM1_2638HM1_2646HM1_2647HM1_2648HM1_2646HM1_2647HM1_2648
GMET269799 GMET_2136GMET_2138GMET_2135GMET_2134GMET_2136GMET_2135GMET_2134GMET_2136
GKAU235909 GK0379GKP23GKP18GKP19GK0379GKP18GKP19
GFOR411154 GFO_0443GFO_0448GFO_0441GFO_0443GFO_0441GFO_0442GFO_0443
FSP1855 FRANEAN1_3211FRANEAN1_6196FRANEAN1_4710FRANEAN1_4711FRANEAN1_3211FRANEAN1_3209FRANEAN1_4711FRANEAN1_4699
FALN326424 FRAAL6161FRAAL3797FRAAL6160FRAAL6162FRAAL6161FRAAL6160FRAAL6159
ECOO157 Z4220Z4214Z4207YGETZ4205YAGTYAGSYAGR
ECOL83334 ECS3754ECS3748ECS3741ECS3740ECS3739ECS0316ECS0315ECS0314
ECOL585397 ECED1_3341ECED1_3335ECED1_3328ECED1_3327ECED1_3326ECED1_3327ECED1_3326
ECOL585056 ECUMN_3224ECUMN_3218ECUMN_3211ECUMN_3210ECUMN_3209ECUMN_0316ECUMN_0315
ECOL585055 EC55989_3168EC55989_3162EC55989_3155EC55989_3154EC55989_3153EC55989_0291EC55989_0290EC55989_0289
ECOL585035 ECS88_3160ECS88_3154ECS88_3147ECS88_3146ECS88_3145ECS88_3146ECS88_3145
ECOL585034 ECIAI1_3001ECIAI1_2995ECIAI1_2988ECIAI1_2987ECIAI1_2986ECIAI1_0287ECIAI1_0286ECIAI1_0285
ECOL481805 ECOLC_0827ECOLC_0833ECOLC_0840ECOLC_0841ECOLC_0842ECOLC_3333ECOLC_3334ECOLC_3335
ECOL469008 ECBD_0856ECBD_0862ECBD_0869ECBD_0870ECBD_0871ECBD_3371ECBD_3372ECBD_3373
ECOL439855 ECSMS35_3014ECSMS35_3008ECSMS35_3001ECSMS35_3000ECSMS35_2999ECSMS35_3000ECSMS35_2999
ECOL413997 ECB_02714ECB_02708ECB_02701ECB_02700ECB_02699ECB_00245ECB_00244ECB_00243
ECOL409438 ECSE_3145ECSE_3139ECSE_3132ECSE_3131ECSE_3130ECSE_0304ECSE_0303ECSE_0302
ECOL364106 UTI89_C3266UTI89_C3260UTI89_C3253UTI89_C3252UTI89_C3251UTI89_C3252UTI89_C3251
ECOL362663 ECP_2875ECP_2869ECP_2862ECP_2861ECP_2860ECP_2861ECP_2860
ECOL331111 ECE24377A_3207ECE24377A_3200ECE24377A_3193ECE24377A_3192ECE24377A_3191ECE24377A_0297ECE24377A_0296ECE24377A_0295
ECOL316407 ECK2877:JW2849:B2881ECK2871:JW2843:B2875ECK2864:JW2836:B2868ECK2863:JW2835:B2867ECK2862:JW5462:B2866ECK0285:JW0280:B0286ECK0284:JW0279:B0285ECK0283:JW0278:B0284
ECOL199310 C3459C3453C3446C3445C3444C3445C3444
DSHI398580 DSHI_4202DSHI_1215DSHI_4201DSHI_2958DSHI_4202DSHI_2660DSHI_4200DSHI_2959
DRED349161 DRED_2776DRED_0314DRED_2773DRED_1502DRED_1504DRED_1503DRED_1504
DRAD243230 DR_A0237DR_A0129DR_A0235DR_A0236DR_A0231DR_A0233DR_A0232DR_A0231
DPSY177439 DP3066DP1871DP2532DP2533DP2531DP2532DP1724DP2531
DHAF138119 DSY0865DSY0869DSY0864DSY0866DSY1987DSY0864DSY0866DSY0865
CSP501479 CSE45_2402CSE45_1533CSE45_4668CSE45_5033CSE45_2402CSE45_5039CSE45_4669CSE45_5041
CSAL290398 CSAL_1788CSAL_1787CSAL_0527CSAL_1789CSAL_0529CSAL_0527CSAL_0528CSAL_0529
CBOT515621 CLJ_B1333CLJ_B3146CLJ_B1335CLJ_B1334CLJ_B1333CLJ_B1335CLJ_B1333
CBOT508765 CLL_A0636CLL_A0644CLL_A0638CLL_A0637CLL_A0636CLL_A0638CLL_A0636
CBOT441771 CLC_1323CLC_2789CLC_1325CLC_1324CLC_1323CLC_1325CLC_1323
CBOT441770 CLB_1313CLB_2856CLB_1315CLB_1314CLB_1313CLB_1315CLB_1313
CBOT36826 CBO1285CBO2892CBO1287CBO1286CBO1285CBO1287CBO1285
BXEN266265 BXE_C1225BXE_C0035BXE_B0075BXE_C0029BXE_B2533BXE_B2224BXE_B2225BXE_C1225
BVIE269482 BCEP1808_3040BCEP1808_3142BCEP1808_3042BCEP1808_0769BCEP1808_0770BCEP1808_3042BCEP1808_3041BCEP1808_3040
BSP376 BRADO1736BRADO5451BRADO6663BRADO6031BRADO1736BRADO2882BRADO2883BRADO2884
BPER257313 BP0685BP2128BP0684ABP0684BP0685BP0684ABP0684BP0685
BJAP224911 BLR6161BLL5660BLR5209BLL6239BLR6161BLR5209BLR5210BLR5211
BHAL272558 BH0748BH1974BH0749BH0747BH0748BH0749BH0748
BCLA66692 ABC3741ABC3744ABC3740ABC3742ABC3741ABC3740ABC3741
BCEN331272 BCEN2424_2953BCEN2424_3057BCEN2424_2955BCEN2424_2954BCEN2424_2953BCEN2424_2955BCEN2424_2954BCEN2424_2953
BCEN331271 BCEN_2339BCEN_2443BCEN_2341BCEN_2340BCEN_2339BCEN_2341BCEN_2340BCEN_2339
BBRO257310 BB0392BB2416BB0391BB0390BB0392BB0391BB0390BB0392
BAMB398577 BAMMC406_5518BAMMC406_2968BAMMC406_2864BAMMC406_5517BAMMC406_5518BAMMC406_2864BAMMC406_2863BAMMC406_2862
BAMB339670 BAMB_5751BAMB_3102BAMB_3001BAMB_5750BAMB_5751BAMB_3001BAMB_3000BAMB_2999
ASP76114 EBA3603EBA2089EBA3604EBA2062EBA3603EBA3604EBA3602EBA3603
ASP1667 ARTH_3420ARTH_3422ARTH_2040ARTH_2041ARTH_3420ARTH_2040ARTH_2041ARTH_3420
APER272557 APE0708APE2227APE2213APE2219APE2216APE2213APE2219APE0708
AORE350688 CLOS_0879CLOS_1965CLOS_0878CLOS_0877CLOS_0879CLOS_0376CLOS_0877CLOS_0879
AMET293826 AMET_0472AMET_4563AMET_4570AMET_0681AMET_0472AMET_4570AMET_0681AMET_0683
AHYD196024 AHA_2173AHA_2167AHA_2179AHA_2178AHA_2177AHA_2178AHA_2177
AFER243159 AFE_2260AFE_2264AFE_2263AFE_2265AFE_2230AFE_2232AFE_2231
ACRY349163 ACRY_1561ACRY_0474ACRY_0511ACRY_2176ACRY_1968ACRY_0511ACRY_0510ACRY_0509
ACEL351607 ACEL_1642ACEL_1631ACEL_1637ACEL_1638ACEL_1642ACEL_1637ACEL_1638ACEL_1642
ACAU438753 AZC_4623AZC_1052AZC_2939AZC_2937AZC_4623AZC_1402AZC_1401AZC_1400
ABAU360910 BAV2736BAV3407BAV2737BAV2738BAV2736BAV2737BAV2738BAV2736
AAVE397945 AAVE_1485AAVE_4011AAVE_3926AAVE_1130AAVE_1129AAVE_4014AAVE_1486AAVE_1485


Organism features enriched in list (features available for 129 out of the 143 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00723801292
Disease:Opportunistic_infections 0.009059945
GC_Content_Range4:0-40 4.213e-1512213
GC_Content_Range4:40-60 0.007726839224
GC_Content_Range4:60-100 1.212e-2378145
GC_Content_Range7:0-30 0.0075118447
GC_Content_Range7:30-40 2.382e-128166
GC_Content_Range7:40-50 8.840e-78117
GC_Content_Range7:60-70 4.442e-2273134
Genome_Size_Range5:0-2 2.057e-172155
Genome_Size_Range5:2-4 0.000636829197
Genome_Size_Range5:4-6 2.196e-969184
Genome_Size_Range5:6-10 8.062e-102947
Genome_Size_Range9:1-2 1.319e-132128
Genome_Size_Range9:2-3 0.000080112120
Genome_Size_Range9:4-5 0.00097723396
Genome_Size_Range9:5-6 7.932e-63688
Genome_Size_Range9:6-8 6.193e-72238
Genome_Size_Range9:8-10 0.000510079
Gram_Stain:Gram_Neg 0.005900485333
Habitat:Host-associated 0.000012726206
Habitat:Multiple 0.000078657178
Motility:Yes 5.348e-681267
Optimal_temp.:25-30 7.654e-91619
Oxygen_Req:Aerobic 0.001856054185
Pathogenic_in:Animal 0.0000349366
Pathogenic_in:Human 8.923e-627213
Pathogenic_in:No 0.000049369226
Shape:Branched_filament 0.002310944
Shape:Coccus 0.0028640982
Shape:Rod 2.365e-8103347



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 382
Effective number of orgs (counting one per cluster within 468 clusters): 281

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317580
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329530
YPES386656 ncbi Yersinia pestis Pestoides F0
YPES377628 ncbi Yersinia pestis Nepal5160
YPES360102 ncbi Yersinia pestis Antiqua0
YPES349746 ncbi Yersinia pestis Angola0
YPES214092 ncbi Yersinia pestis CO920
YPES187410 ncbi Yersinia pestis KIM 100
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80810
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VVUL216895 ncbi Vibrio vulnificus CMCP60
VVUL196600 ncbi Vibrio vulnificus YJ0160
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106330
VFIS312309 ncbi Vibrio fischeri ES1140
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354051
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT20
STRO369723 ncbi Salinispora tropica CNB-4400
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSED425104 ncbi Shewanella sediminis HAW-EB30
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1590
SLOI323850 ncbi Shewanella loihica PV-40
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4760
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B670
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91500
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT180
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty20
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDYS300267 ncbi Shigella dysenteriae Sd1970
SDEN318161 ncbi Shewanella denitrificans OS2170
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB1
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO10
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 371
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785780
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GSUL243231 ncbi Geobacter sulfurreducens PCA1
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
ESP42895 Enterobacter sp.0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10430
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVIO243365 ncbi Chromobacterium violaceum ATCC 124721
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4490
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7500   G7494   G7487   G7486   G7485   G6157   G6156   G6155   
ZMOB264203
YPSE349747
YPSE273123
YPES386656
YPES377628
YPES360102
YPES349746
YPES214092
YPES187410
YENT393305
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
WSUC273121
WPIP955
WPIP80849
VVUL216895
VVUL196600
VPAR223926
VFIS312309
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275 TDE_0728
TCRU317025
TACI273075
STYP99287
STRO369723
STHE322159
STHE299768
STHE292459 STH2206
STHE264199
SSUI391296
SSUI391295
SSP94122
SSP84588
SSP64471
SSP387093
SSP321327
SSP1148
SSP1131
SSED425104
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579
SONE211586
SMUT210007
SLOI323850
SHAE279808
SGOR29390
SGLO343509
SEPI176280
SEPI176279
SENT454169
SENT321314
SENT295319
SENT220341
SENT209261
SELO269084
SDYS300267
SDEN318161
SBAL402882
SBAL399599
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI56780 SYN_01045
RTYP257363
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PSP117
PRUM264731
PPEN278197
PMUL272843
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PLUM243265
PINT246198
PING357804 PING_1831
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PDIS435591
PAST100379
PARC259536
PACN267747
PABY272844
OTSU357244
OIHE221109
NSP387092
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NEUT335283
NEUR228410
MTHE349307
MTHE187420
MSYN262723
MSUC221988
MSTA339860
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2013
MGEN243273
MFLO265311
MCAP340047
MCAP243233
MBUR259564
MBAR269797
MAVI243243
MART243272
MAER449447
MAEO419665
MACE188937
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KPNE272620
ILOI283942
IHOS453591
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HINF71421
HINF374930
HINF281310
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HAUR316274
HACI382638
GVIO251221
GSUL243231 GSU_0202
GBET391165 GBCGDNIH1_0924
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FRANT
FPHI484022
FNUC190304
FNOD381764
ESP42895
ERUM302409
ERUM254945
ECHA205920
ECAR218491
ECAN269484
DSP255470
DSP216389
DOLE96561
DNOD246195
DETH243164
CVIO243365 CV_1675
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CACE272562
CABO218497
BWEI315730
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BSP107806
BQUI283165
BPUM315750
BMEL359391 BAB1_0377
BLON206672
BLIC279010
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BBUR224326
BBAC360095
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAFZ390236
AYEL322098
AURANTIMONAS
ASAL382245
APLE434271
APLE416269
APHA212042
ANAE240017
AMAR329726 AM1_0249
AMAR234826
ALAI441768
AFUL224325
ABUT367737
ABOR393595
AAEO224324


Organism features enriched in list (features available for 361 out of the 382 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00572946792
Arrangment:Clusters 0.00273121617
Arrangment:Filaments 0.0072354210
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00483761111
Disease:Wide_range_of_infections 0.00483761111
Endospores:No 0.0001821150211
Endospores:Yes 0.00031222153
GC_Content_Range4:0-40 1.895e-25188213
GC_Content_Range4:60-100 3.768e-3329145
GC_Content_Range7:0-30 0.00534103747
GC_Content_Range7:30-40 1.789e-22151166
GC_Content_Range7:40-50 1.185e-694117
GC_Content_Range7:50-60 0.000076349107
GC_Content_Range7:60-70 1.117e-2729134
Genome_Size_Range5:0-2 3.068e-31150155
Genome_Size_Range5:2-4 0.0006188139197
Genome_Size_Range5:4-6 8.847e-1867184
Genome_Size_Range5:6-10 3.539e-14547
Genome_Size_Range9:0-1 1.630e-62727
Genome_Size_Range9:1-2 9.725e-24123128
Genome_Size_Range9:2-3 2.639e-9101120
Genome_Size_Range9:3-4 0.00542013877
Genome_Size_Range9:4-5 2.271e-73796
Genome_Size_Range9:5-6 6.611e-93088
Genome_Size_Range9:6-8 1.411e-11438
Genome_Size_Range9:8-10 0.002307319
Gram_Stain:Gram_Neg 0.0051712193333
Habitat:Host-associated 2.045e-9160206
Habitat:Multiple 0.000036689178
Habitat:Terrestrial 0.00142681131
Motility:No 0.0001002112151
Motility:Yes 3.817e-8134267
Optimal_temp.:25-30 2.209e-7119
Optimal_temp.:30 0.0044907415
Optimal_temp.:30-37 0.00176271718
Oxygen_Req:Aerobic 3.917e-885185
Oxygen_Req:Facultative 0.0056582137201
Pathogenic_in:Animal 0.00230785166
Pathogenic_in:Human 6.560e-6156213
Pathogenic_in:No 5.450e-6115226
Shape:Coccus 0.00006006682
Shape:Irregular_coccus 0.00273121617
Shape:Rod 1.119e-12175347
Shape:Sphere 0.00009211919
Shape:Spiral 0.00008143134



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 21
Effective number of orgs (counting one per cluster within 468 clusters): 19

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
APER272557 ncbi Aeropyrum pernix K1 1.075e-72988
STOK273063 ncbi Sulfolobus tokodaii 7 4.959e-73608
SACI330779 ncbi Sulfolobus acidocaldarius DSM 639 5.071e-73618
MSED399549 ncbi Metallosphaera sedula DSM 5348 5.922e-73688
SSOL273057 ncbi Sulfolobus solfataricus P2 1.362e-64088
SMAR399550 ncbi Staphylothermus marinus F1 6.811e-62737
PAER178306 ncbi Pyrobaculum aerophilum IM2 0.00003813497
ACEL351607 ncbi Acidothermus cellulolyticus 11B 0.00059858698
PISL384616 ncbi Pyrobaculum islandicum DSM 4184 0.00102583226
PARS340102 ncbi Pyrobaculum arsenaticum DSM 13514 0.00202053616
DRAD243230 ncbi Deinococcus radiodurans R1 0.002819210548
FSP1855 Frankia sp. EAN1pec 0.003531510848
PTHE370438 ncbi Pelotomaculum thermopropionicum SI 0.004590211208
TROS309801 ncbi Thermomicrobium roseum DSM 5159 0.004825611278
BXEN266265 ncbi Burkholderia xenovorans LB400 0.005000111328
AORE350688 ncbi Alkaliphilus oremlandii OhILAs 0.005674911508
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK 0.005999511588
HMOD498761 ncbi Heliobacterium modesticaldum Ice1 0.007516811918
MSP164756 ncbi Mycobacterium sp. MCS 0.007878711988
MSP189918 ncbi Mycobacterium sp. KMS 0.008146412038
MSP164757 ncbi Mycobacterium sp. JLS 0.008534612108


Names of the homologs of the genes in the group in each of these orgs
  G7500   G7494   G7487   G7486   G7485   G6157   G6156   G6155   
APER272557 APE0708APE2227APE2213APE2219APE2216APE2213APE2219APE0708
STOK273063 ST1781ST0121ST0561ST1783ST1781ST1782ST1783ST2339
SACI330779 SACI_2271SACI_1021SACI_2270SACI_0916SACI_2271SACI_0917SACI_2269SACI_1009
MSED399549 MSED_0297MSED_1387MSED_0298MSED_0299MSED_0297MSED_0298MSED_0609MSED_0297
SSOL273057 SSO2639SSO1292SSO2433SSO2636SSO2639SSO2433SSO2636SSO3239
SMAR399550 SMAR_0357SMAR_0033SMAR_0356SMAR_0355SMAR_0357SMAR_0356SMAR_0357
PAER178306 PAE1935PAE2669PAE2477PAE1939PAE1935PAE2477PAE1935
ACEL351607 ACEL_1642ACEL_1631ACEL_1637ACEL_1638ACEL_1642ACEL_1637ACEL_1638ACEL_1642
PISL384616 PISL_1780PISL_1783PISL_1784PISL_1780PISL_1784PISL_1780
PARS340102 PARS_2021PARS_0253PARS_2022PARS_2023PARS_2021PARS_2021
DRAD243230 DR_A0237DR_A0129DR_A0235DR_A0236DR_A0231DR_A0233DR_A0232DR_A0231
FSP1855 FRANEAN1_3211FRANEAN1_6196FRANEAN1_4710FRANEAN1_4711FRANEAN1_3211FRANEAN1_3209FRANEAN1_4711FRANEAN1_4699
PTHE370438 PTH_1538PTH_1534PTH_1579PTH_1540PTH_1538PTH_1579PTH_1540PTH_1538
TROS309801 TRD_A0069TRD_A0236TRD_A0776TRD_1208TRD_A0069TRD_A0776TRD_A0566TRD_A0400
BXEN266265 BXE_C1225BXE_C0035BXE_B0075BXE_C0029BXE_B2533BXE_B2224BXE_B2225BXE_C1225
AORE350688 CLOS_0879CLOS_1965CLOS_0878CLOS_0877CLOS_0879CLOS_0376CLOS_0877CLOS_0879
MGIL350054 MFLV_1573MFLV_1574MFLV_1570MFLV_1571MFLV_1573MFLV_0282MFLV_0283MFLV_0284
HMOD498761 HM1_2648HM1_2638HM1_2646HM1_2647HM1_2648HM1_2646HM1_2647HM1_2648
MSP164756 MMCS_4600MMCS_0488MMCS_4603MMCS_4602MMCS_0491MMCS_0439MMCS_0438MMCS_0437
MSP189918 MKMS_4688MKMS_0499MKMS_4691MKMS_4690MKMS_0502MKMS_0449MKMS_0448MKMS_0447
MSP164757 MJLS_4983MJLS_0477MJLS_4986MJLS_4985MJLS_0480MJLS_0426MJLS_0425MJLS_0424


Organism features enriched in list (features available for 20 out of the 21 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Endospores:No 0.005497713211
Genome_Size_Range5:2-4 0.009466812197
Genome_Size_Range9:2-3 0.00800829120
Gram_Stain:Gram_Neg 0.00056384333
Habitat:Specialized 0.0000152953
Optimal_temp.:100 0.003255723
Optimal_temp.:70 0.003255723
Oxygen_Req:Facultative 0.00197501201
Pathogenic_in:Human 0.00112431213
Pathogenic_in:No 0.000019617226
Temp._range:Hyperthermophilic 0.0000482623
Temp._range:Mesophilic 4.381e-67473
Temp._range:Thermophilic 0.0000618735



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ORGANISMS DEPLETED FOR GROUP:

Total number of orgs: 9
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
ESP42895 Enterobacter sp. 0.005441633450
SDYS300267 ncbi Shigella dysenteriae Sd197 0.003914633910
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 78578 0.003664434000
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 9150 0.002840834340
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty2 0.002417434550
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT18 0.002066634750
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B67 0.001986234800
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT2 0.001173635440
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL476 0.000905835740


Organism features enriched in list (features available for 8 out of the 9 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.00005417112
Disease:Typhoid_fever 0.000165022
GC_Content_Range4:40-60 0.00043928224
GC_Content_Range7:50-60 1.033e-68107
Genome_Size_Range5:4-6 0.00008858184
Genome_Size_Range9:4-5 0.0003478696
Motility:Yes 0.00182698267
Optimal_temp.:37 0.00003697106
Oxygen_Req:Facultative 0.00018198201
Pathogenic_in:Human 0.00029178213



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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-3982 (uracil degradation (reductive))137790.4382
PWY-6430 (thymine degradation)95620.4268
P108-PWY (pyruvate fermentation to propionate I)160840.4130
PWY0-321 (phenylacetate degradation I (aerobic))155810.4010



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7494   G7487   G7486   G7485   G6157   G6156   G6155   
G75000.9993320.99960.9996980.9998230.9991610.999040.999626
G74940.9992060.999220.9992590.9991870.998760.99918
G74870.9995780.9996260.9996790.9995350.999635
G74860.9996780.9991250.9991620.999368
G74850.999360.9992240.99966
G61570.9997210.999712
G61560.999718
G6155



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PAIRWISE BLAST SCORES:

  G7500   G7494   G7487   G7486   G7485   G6157   G6156   G6155   
G75000.0f0---1.5e-75--3.2e-38
G7494-0.0f0------
G7487--0.0f0--7.6e-21--
G7486---0.0f0----
G74851.3e-78---0.0f0--1.9e-48
G6157-----0.0f0--
G6156---6.8e-5--0.0f0-
G61552.6e-28---3.6e-30--0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides) (degree of match pw to cand: 0.273, degree of match cand to pw: 0.375, average score: 0.555)
  Genes in pathway or complex:
             0.4670 0.2407 EG10039 (amn) AMP-NUCLEOSID-MONOMER (Amn)
             0.8351 0.7060 EG10051 (apt) ADENPRIBOSYLTRAN-MONOMER (Apt)
             0.3159 0.0942 G85 (xapA) XANTHOSINEPHOSPHORY-MONOMER (XapA)
             0.3812 0.1955 EG10222 (deoD) DEOD-MONOMER (DeoD)
             0.4014 0.1885 EG10030 (add) ADENODEAMIN-MONOMER (deoxyadenosine deaminase / adenosine deaminase)
             0.4509 0.2045 EG11102 (gsk) GSK-MONOMER (Gsk)
   *in cand* 0.9996 0.9992 G7487 (xdhC) G7487-MONOMER (putative xanthine dehydrogenase, Fe-S subunit)
   *in cand* 0.9995 0.9991 G7486 (xdhB) G7486-MONOMER (putative xanthine dehydrogenase subunit, FAD-binding domain)
   *in cand* 0.9996 0.9992 G7485 (xdhA) G7485-MONOMER (xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain)
             0.6800 0.2894 EG20098 (hpt) HYPOXANPRIBOSYLTRAN-MONOMER (hypoxanthine-guanine phosphoribosyltransferase)
             0.5746 0.0661 EG10414 (gpt) GPT-MONOMER (Gpt)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9992 G6155 (yagR) G6155-MONOMER (aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit)
   *in cand* 0.9994 0.9988 G6156 (yagS) G6156-MONOMER (aldehyde ferredoxin oxidoreductase, FAD-binding subunit)
   *in cand* 0.9995 0.9991 G6157 (yagT) G6157-MONOMER (aldehyde ferredoxin oxidoreductase, Fe-S subunit)
   *in cand* 0.9993 0.9988 G7494 (yqeB) G7494-MONOMER (conserved protein with NAD(P)-binding Rossman fold)
   *in cand* 0.9995 0.9990 G7500 (xdhD) G7500-MONOMER (putative oxidoreductase; possible component of selenate reductase with possible role in purine salvage)

- CPLX0-7805 (aldehyde ferredoxin oxidoreductase) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.375, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9992 G6155 (yagR) G6155-MONOMER (aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit)
   *in cand* 0.9994 0.9988 G6156 (yagS) G6156-MONOMER (aldehyde ferredoxin oxidoreductase, FAD-binding subunit)
   *in cand* 0.9995 0.9991 G6157 (yagT) G6157-MONOMER (aldehyde ferredoxin oxidoreductase, Fe-S subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9992 G7485 (xdhA) G7485-MONOMER (xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain)
   *in cand* 0.9995 0.9991 G7486 (xdhB) G7486-MONOMER (putative xanthine dehydrogenase subunit, FAD-binding domain)
   *in cand* 0.9996 0.9992 G7487 (xdhC) G7487-MONOMER (putative xanthine dehydrogenase, Fe-S subunit)
   *in cand* 0.9993 0.9988 G7494 (yqeB) G7494-MONOMER (conserved protein with NAD(P)-binding Rossman fold)
   *in cand* 0.9995 0.9990 G7500 (xdhD) G7500-MONOMER (putative oxidoreductase; possible component of selenate reductase with possible role in purine salvage)

- CPLX0-761 (xanthine dehydrogenase) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.375, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9992 G7487 (xdhC) G7487-MONOMER (putative xanthine dehydrogenase, Fe-S subunit)
   *in cand* 0.9995 0.9991 G7486 (xdhB) G7486-MONOMER (putative xanthine dehydrogenase subunit, FAD-binding domain)
   *in cand* 0.9996 0.9992 G7485 (xdhA) G7485-MONOMER (xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9992 G6155 (yagR) G6155-MONOMER (aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit)
   *in cand* 0.9994 0.9988 G6156 (yagS) G6156-MONOMER (aldehyde ferredoxin oxidoreductase, FAD-binding subunit)
   *in cand* 0.9995 0.9991 G6157 (yagT) G6157-MONOMER (aldehyde ferredoxin oxidoreductase, Fe-S subunit)
   *in cand* 0.9993 0.9988 G7494 (yqeB) G7494-MONOMER (conserved protein with NAD(P)-binding Rossman fold)
   *in cand* 0.9995 0.9990 G7500 (xdhD) G7500-MONOMER (putative oxidoreductase; possible component of selenate reductase with possible role in purine salvage)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7485 G7486 G7487 (centered at G7486)
G7500 (centered at G7500)
G7494 (centered at G7494)
G6155 G6156 G6157 (centered at G6156)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7500   G7494   G7487   G7486   G7485   G6157   G6156   G6155   
191/623237/623198/623212/623190/623179/623146/623181/623
AAUR290340:2:Tyes144314451443-1443--0
AAVE397945:0:Tyes35328292746102832354353
ABAC204669:0:Tyes-189811761-236410
ABAU360910:0:Tyes0677120120
ACAU438753:0:Tyes36220190919073622351350349
ACEL351607:0:Tyes11067116711
ACRY349163:8:Tyes108503717081499373635
ADEH290397:0:Tyes-2791-0--0-
AEHR187272:0:Tyes23591021--
AFER243159:0:Tyes-30343335021
AHYD196024:0:Tyes60121110-1110
AMAR329726:9:Tyes-0------
AMET293826:0:Tyes04054406120704061207209
AORE350688:0:Tyes49916094984974990497499
APER272557:0:Tyes01583156915751572156915750
ASP1667:3:Tyes13971399011397011397
ASP232721:2:Tyes19030-19021903---
ASP62928:0:Tyes22392022382239---
ASP62977:0:Tyes-0-2----
ASP76114:2:Tyes905149060905906904905
AVAR240292:1:Tyes-03-1321
BABO262698:1:Tno1--0----
BAMB339670:1:Tno1--01---
BAMB339670:3:Tno-1032--210
BAMB398577:1:Tno1--01---
BAMB398577:3:Tno-1062--210
BAMY326423:0:Tyes24012--2
BBAC264462:0:Tyes-2-0----
BBRO257310:0:Tyes22046102102
BCAN483179:1:Tno12-01---
BCEN331271:2:Tno0102210210
BCEN331272:3:Tyes0104210210
BCER226900:1:Tyes30-23---
BCLA66692:0:Tyes140210-1
BHAL272558:0:Tyes112502012-1
BJAP224911:0:Fyes96146001039961012
BMAL243160:0:Tno-----0--
BMAL243160:1:Tno-1140-0----
BMAL320388:1:Tno-2032-0----
BMAL320389:0:Tyes-----0--
BMAL320389:1:Tyes-1463-0----
BMEL224914:1:Tno10-2----
BMEL359391:1:Tno---0----
BOVI236:1:Tyes-1-0----
BPAR257311:0:Tno-92110-10-
BPER257313:0:Tyes112830-10-1
BPET94624:0:Tyes-014951494-149514941493
BPSE272560:0:Tyes-----0--
BPSE272560:1:Tyes25050-2506----
BPSE320372:0:Tno-----0--
BPSE320372:1:Tno29080-2909----
BPSE320373:0:Tno-----0--
BPSE320373:1:Tno28210-2822----
BSP36773:1:Tyes-----0--
BSP36773:2:Tyes12526-01--562
BSP376:0:Tyes03526468040860108110821083
BSUB:0:Tyes140-10-1
BSUI204722:1:Tyes1--01---
BSUI470137:1:Tno01--0---
BTHA271848:0:Tno-----0--
BTHA271848:1:Tno11910-11901191---
BVIE269482:7:Tyes22502352225201225222512250
BXEN266265:0:Tyes11296-0---1129
BXEN266265:1:Tyes--2399-0304303-
CAULO:0:Tyes2633360702634----
CBEI290402:0:Tyes20562---
CBOT36826:1:Tno016012102-0
CBOT441770:0:Tyes015162102-0
CBOT441771:0:Tno014392102-0
CBOT441772:1:Tno01541210--0
CBOT498213:1:Tno01621210--0
CBOT508765:1:Tyes082102-0
CBOT515621:2:Tyes017852102-0
CBOT536232:0:Tno01792210--0
CDIF272563:1:Tyes26141315-015-26
CHYD246194:0:Tyes-51021-2
CJAP155077:0:Tyes12-0----
CMIC31964:2:Tyes202-2--2
CMIC443906:2:Tyes020-0--0
CPHY357809:0:Tyes14471417142601447--1447
CPSY167879:0:Tyes44604461-445944600--
CSAL290398:0:Tyes12851284012862012
CSP501479:4:Fyes---0-6-8
CSP501479:5:Fyes--0---1-
CSP501479:8:Fyes8550--855---
CSP78:2:Tyes2327232602328-2214-1
CTET212717:0:Tyes5460-545546---
CVIO243365:0:Tyes-0------
DARO159087:0:Tyes-20--0--
DDES207559:0:Tyes070-0--0
DGEO319795:0:Tyes-0-2---1
DGEO319795:1:Tyes--2--20-
DHAF138119:0:Tyes15021146021
DPSY177439:2:Tyes13691508198208188190818
DRAD243230:2:Tyes103010110297999897
DRED349161:0:Tyes247702474119812001199-1200
DSHI398580:0:Tyes2-1-2-0-
DSHI398580:5:Tyes-0-1762-1463-1763
DVUL882:1:Tyes707-7--7
ECOL199310:0:Tno159210-10
ECOL316407:0:Tno26002594258725862585210
ECOL331111:6:Tno27902783277627752774210
ECOL362663:0:Tno159210-10
ECOL364106:1:Tno159210-10
ECOL405955:2:Tyes148-10-10
ECOL409438:6:Tyes28952889288228812880210
ECOL413997:0:Tno24832477247024692468210
ECOL439855:4:Tno159210-10
ECOL469008:0:Tno06131415249925002501
ECOL481805:0:Tno06131415251625172518
ECOL585034:0:Tno26852679267226712670210
ECOL585035:0:Tno159210-10
ECOL585055:0:Tno28482842283528342833210
ECOL585056:2:Tno29272921291429132912-10
ECOL585057:0:Tno159210--0
ECOL585397:0:Tno159210-10
ECOL83334:0:Tno35203514350735063505210
ECOLI:0:Tno26562650264326422641210
ECOO157:0:Tno35373531352435233522210
EFAE226185:3:Tyes707-7---
EFER585054:1:Tyes-3--2012
ELIT314225:0:Tyes-21970--2200-2199
FALN326424:0:Tyes229802297229922982297-2296
FJOH376686:0:Tyes-52--210
FMAG334413:1:Tyes093--0--0
FSP106370:0:Tyes-155410---2
FSP1855:0:Tyes22944146414652014651453
GBET391165:0:Tyes-0------
GFOR411154:0:Tyes270-2012
GKAU235909:0:Tyes-501-01-
GKAU235909:1:Tyes0---0---
GMET269799:1:Tyes24102102
GOXY290633:5:Tyes-0103620420310361035-
GSUL243231:0:Tyes-0------
GTHE420246:1:Tyes24012---
GURA351605:0:Tyes07--00--
HARS204773:0:Tyes-20--0--
HCHE349521:0:Tyes-0-2-3788-1
HMAR272569:7:Tyes605-65-6
HMOD498761:0:Tyes10089108910
HNEP81032:0:Tyes-0321321
HWAL362976:1:Tyes--10-10-
JSP290400:1:Tyes172333401208120633812082
JSP375286:0:Tyes02652771275267-0
KRAD266940:2:Fyes101-1--1
LCHO395495:0:Tyes1924027711923-444--
MABS561007:1:Tyes10--1--1
MAQU351348:2:Tyes-4650--0--
MBOV233413:0:Tno-312012-
MBOV410289:0:Tno-312012-
MEXT419610:0:Tyes9102340466910284028412842
MFLA265072:0:Tyes-0---2--
MGIL350054:3:Tyes12911292128812891291012
MHUN323259:0:Tyes-0------
MLOT266835:2:Tyes17200172117223729144614471448
MMAG342108:0:Tyes633020326341170203211711170
MPET420662:1:Tyes02607-1-2125--
MSED399549:0:Tyes0107312013100
MSME246196:0:Tyes6065951535152606210
MSP164756:1:Tno4188514191419054210
MSP164757:0:Tno4556534559455856210
MSP189918:2:Tyes4259524262426155210
MSP266779:1:Tyes----0---
MSP266779:3:Tyes421124702790-526525524
MSP400668:0:Tyes-0-2--2-
MSP409:2:Tyes4311308222642541595012
MTBCDC:0:Tno--120120
MTBRV:0:Tno-3120120
MTHE264732:0:Tyes2420123139
MTUB336982:0:Tno-3120120
MTUB419947:0:Tyes-3120120
MVAN350058:0:Tyes31993100310431033199120
MXAN246197:0:Tyes-1-0-1630--
NARO279238:0:Tyes--1612--0--
NFAR247156:2:Tyes5110--511--511
NHAM323097:2:Tyes24715220392391012
NSP35761:1:Tyes1393391403937341393012474038
NWIN323098:0:Tyes0113411391138011391138-
OANT439375:5:Tyes1--01--1
OCAR504832:0:Tyes187801331877131133132131
PAER178306:0:Tyes054241020-4100
PAER208963:0:Tyes4304312429-210
PAER208964:0:Tno104142-414415416
PARS340102:0:Tyes17390174017411739--1739
PATL342610:0:Tyes12-0-187--
PCAR338963:0:Tyes-7---0--
PCRY335284:1:Tyes66366266501665664663
PENT384676:0:Tyes10-2----
PFLU205922:0:Tyes103252323325324323
PFLU216595:1:Tyes1273301733732731
PFLU220664:0:Tyes10-2----
PING357804:0:Tyes-----0--
PISL384616:0:Tyes0-340-40
PMEN399739:0:Tyes4154162414415210
PMOB403833:0:Tyes023607-0
PNAP365044:8:Tyes167016721670016701670-1670
PPRO298386:2:Tyes05283080--0
PPUT160488:0:Tno9609610959-012
PPUT351746:0:Tyes108342-834833832
PPUT76869:0:Tno2622630261-0--
PSP296591:2:Tyes2809069082809645
PSP312153:0:Tyes-0269-----
PSP56811:2:Tyes230-2012
PSTU379731:0:Tyes21450221442145234
PSYR205918:0:Tyes1024842-24842483576
PSYR223283:2:Tyes78578617687842012
PTHE370438:0:Tyes4045644564
PTOR263820:0:Tyes-39410----
RCAS383372:0:Tyes3101401203101203101
RDEN375451:3:Tyes-------0
RDEN375451:4:Tyes113511349011349--
RETL347834:5:Tyes-2-01---
REUT264198:1:Tyes-0------
REUT264198:2:Tyes--0--905906907
REUT264198:3:Tyes2--02---
REUT381666:1:Tyes--0--113611371138
REUT381666:2:Tyes28570-28552857---
RFER338969:1:Tyes-2---0--
RLEG216596:0:Tyes1-0-1---
RLEG216596:5:Tyes-0---321
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