CANDIDATE ID: 204

CANDIDATE ID: 204

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9952279e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.2500000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7454 (csdA) (b2810)
   Products of gene:
     - G7454-MONOMER (cysteine sulfinate desulfinase)
     - CPLX0-7838 (cysteine sulfinate desulfinase)
       Reactions:
        3-sulfinoalanine + H2O  =  L-alanine + sulfite + H+

- G7324 (iscU) (b2529)
   Products of gene:
     - G7324-MONOMER (scaffold protein involved in iron-sulfur cluster assembly)

- G6909 (sufB) (b1683)
   Products of gene:
     - G6909-MONOMER (SufB component of SufBCD Fe-S cluster scaffold complex)
     - CPLX0-1341 (SufBCD Fe-S cluster scaffold complex)

- G6908 (sufC) (b1682)
   Products of gene:
     - G6908-MONOMER (SufC component of SufBCD Fe-S cluster scaffold complex)
     - CPLX0-1341 (SufBCD Fe-S cluster scaffold complex)

- G6907 (sufD) (b1681)
   Products of gene:
     - G6907-MONOMER (SufD component of SufBCD Fe-S cluster scaffold complex)
     - CPLX0-1341 (SufBCD Fe-S cluster scaffold complex)

- G6906 (sufS) (b1680)
   Products of gene:
     - G6906-MONOMER (L-selenocysteine lyase (and L-cysteine desulfurase) monomer)
     - CPLX0-246 (selenocysteine lyase)
       Reactions:
        a reduced electron acceptor + selenocysteine  =  an oxidized electron acceptor + L-alanine + hydrogen selenide

- EG12132 (iscA) (b2528)
   Products of gene:
     - EG12132-MONOMER (iron-sulfur cluster assembly protein)

- EG11378 (sufA) (b1684)
   Products of gene:
     - EG11378-MONOMER (Fe-S cluster assembly, scaffold protein)
     - CPLX0-7824 (Fe-S transport protein in Fe-S cluster assembly)



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 178
Effective number of orgs (counting one per cluster within 468 clusters): 127

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM47
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XFAS405440 ncbi Xylella fastidiosa M127
XFAS183190 ncbi Xylella fastidiosa Temecula17
XFAS160492 ncbi Xylella fastidiosa 9a5c7
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
XAUT78245 ncbi Xanthobacter autotrophicus Py27
TTUR377629 ncbi Teredinibacter turnerae T79018
TTHE300852 ncbi Thermus thermophilus HB87
TTHE262724 ncbi Thermus thermophilus HB277
TERY203124 ncbi Trichodesmium erythraeum IMS1018
TELO197221 ncbi Thermosynechococcus elongatus BP-18
TCRU317025 ncbi Thiomicrospira crunogena XCL-27
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
STHE292459 ncbi Symbiobacterium thermophilum IAM 148637
SSP644076 Silicibacter sp. TrichCH4B7
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)8
SSP321327 ncbi Synechococcus sp. JA-3-3Ab8
SSP292414 ncbi Ruegeria sp. TM10407
SSP1148 ncbi Synechocystis sp. PCC 68037
SSON300269 ncbi Shigella sonnei Ss0468
SRUB309807 ncbi Salinibacter ruber DSM 138557
SPRO399741 ncbi Serratia proteamaculans 5688
SMEL266834 ncbi Sinorhizobium meliloti 10217
SMED366394 ncbi Sinorhizobium medicae WSM4197
SLAC55218 Ruegeria lacuscaerulensis7
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SGLO343509 ncbi Sodalis glossinidius morsitans7
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122287
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1978
SDEG203122 ncbi Saccharophagus degradans 2-407
SBOY300268 ncbi Shigella boydii Sb2278
SALA317655 ncbi Sphingopyxis alaskensis RB22567
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99418
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170257
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170297
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.17
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111707
RPOM246200 ncbi Ruegeria pomeroyi DSS-37
RPAL316058 ncbi Rhodopseudomonas palustris HaA28
RPAL316057 ncbi Rhodopseudomonas palustris BisB58
RPAL316056 ncbi Rhodopseudomonas palustris BisB188
RPAL316055 ncbi Rhodopseudomonas palustris BisA538
RPAL258594 ncbi Rhodopseudomonas palustris CGA0098
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38417
RFER338969 ncbi Rhodoferax ferrireducens T1188
REUT381666 ncbi Ralstonia eutropha H168
RETL347834 ncbi Rhizobium etli CFN 427
RDEN375451 ncbi Roseobacter denitrificans OCh 1147
PSP296591 ncbi Polaromonas sp. JS6668
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO18
PING357804 ncbi Psychromonas ingrahamii 378
OCAR504832 ncbi Oligotropha carboxidovorans OM57
OANT439375 ncbi Ochrobactrum anthropi ATCC 491887
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2557
NSP103690 ncbi Nostoc sp. PCC 71208
NPHA348780 ncbi Natronomonas pharaonis DSM 21608
NOCE323261 ncbi Nitrosococcus oceani ATCC 197078
NMUL323848 ncbi Nitrosospira multiformis ATCC 251968
NHAM323097 ncbi Nitrobacter hamburgensis X147
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197188
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124447
MXAN246197 ncbi Myxococcus xanthus DK 16228
MSP409 Methylobacterium sp.8
MSP400668 ncbi Marinomonas sp. MWYL17
MSP266779 ncbi Chelativorans sp. BNC17
MMAR394221 ncbi Maricaulis maris MCS107
MLOT266835 ncbi Mesorhizobium loti MAFF3030998
MEXT419610 ncbi Methylobacterium extorquens PA17
MCAP243233 ncbi Methylococcus capsulatus Bath8
MAQU351348 ncbi Marinobacter aquaeolei VT87
MAER449447 ncbi Microcystis aeruginosa NIES-8437
LPNE400673 ncbi Legionella pneumophila Corby8
LPNE297246 ncbi Legionella pneumophila Paris8
LPNE297245 ncbi Legionella pneumophila Lens7
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 18
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
JSP290400 ncbi Jannaschia sp. CCS17
ILOI283942 ncbi Idiomarina loihiensis L2TR7
HWAL362976 ncbi Haloquadratum walsbyi DSM 167908
HNEP81032 Hyphomonas neptunium7
HMUK485914 ncbi Halomicrobium mukohataei DSM 122868
HMAR272569 ncbi Haloarcula marismortui ATCC 430497
HHAL349124 ncbi Halorhodospira halophila SL17
HCHE349521 ncbi Hahella chejuensis KCTC 23967
GVIO251221 ncbi Gloeobacter violaceus PCC 74218
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-27
GOXY290633 ncbi Gluconobacter oxydans 621H7
GKAU235909 ncbi Geobacillus kaustophilus HTA4268
FSP1855 Frankia sp. EAN1pec8
FSP106370 ncbi Frankia sp. CcI38
FALN326424 ncbi Frankia alni ACN14a7
ESP42895 Enterobacter sp.8
ELIT314225 ncbi Erythrobacter litoralis HTCC25947
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DSHI398580 ncbi Dinoroseobacter shibae DFL 127
CSP78 Caulobacter sp.7
CSP501479 Citreicella sp. SE457
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE257
CJAP155077 Cellvibrio japonicus7
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334067
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1117
CBUR360115 ncbi Coxiella burnetii RSA 3317
CBUR227377 ncbi Coxiella burnetii RSA 4937
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN7
CAULO ncbi Caulobacter crescentus CB157
BTRI382640 ncbi Bartonella tribocorum CIP 1054767
BSUI470137 ncbi Brucella suis ATCC 234457
BSUI204722 ncbi Brucella suis 13307
BSUB ncbi Bacillus subtilis subtilis 1688
BSP376 Bradyrhizobium sp.7
BQUI283165 ncbi Bartonella quintana Toulouse7
BPUM315750 ncbi Bacillus pumilus SAFR-0327
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BOVI236 Brucella ovis7
BMEL359391 ncbi Brucella melitensis biovar Abortus 23087
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M7
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BLIC279010 ncbi Bacillus licheniformis ATCC 145807
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1107
BHEN283166 ncbi Bartonella henselae Houston-17
BCIC186490 Candidatus Baumannia cicadellinicola7
BCER315749 ncbi Bacillus cytotoxicus NVH 391-987
BCAN483179 ncbi Brucella canis ATCC 233657
BBAC360095 ncbi Bartonella bacilliformis KC5837
BAMY326423 ncbi Bacillus amyloliquefaciens FZB428
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9417
AVAR240292 ncbi Anabaena variabilis ATCC 294138
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C8
ACAU438753 ncbi Azorhizobium caulinodans ORS 5717
ABOR393595 ncbi Alcanivorax borkumensis SK27


Names of the homologs of the genes in the group in each of these orgs
  G7454   G7324   G6909   G6908   G6907   G6906   EG12132   EG11378   
ZMOB264203 ZMO0427ZMO0423ZMO0425ZMO0426ZMO0427ZMO0429ZMO0429
YPSE349747 YPSIP31758_0998YPSIP31758_1169YPSIP31758_1742YPSIP31758_1743YPSIP31758_1744YPSIP31758_1745YPSIP31758_1170YPSIP31758_1741
YPSE273123 YPTB3018YPTB2858YPTB2313YPTB2312YPTB2311YPTB2310YPTB2857YPTB2314
YPES386656 YPDSF_1685YPDSF_2240YPDSF_0745YPDSF_0746YPDSF_0747YPDSF_0748YPDSF_2239YPDSF_0744
YPES377628 YPN_2974YPN_1242YPN_1858YPN_1857YPN_1856YPN_1855YPN_1243YPN_1859
YPES360102 YPA_0499YPA_2336YPA_1748YPA_1747YPA_1746YPA_1745YPA_2335YPA_1749
YPES349746 YPANGOLA_A3222YPANGOLA_A0434YPANGOLA_A2593YPANGOLA_A2592YPANGOLA_A2591YPANGOLA_A2590YPANGOLA_A0433YPANGOLA_A2594
YPES214092 YPO1028YPO2895YPO2403YPO2402YPO2401YPO2400YPO2894YPO2404
YPES187410 Y3156Y1335Y1935Y1936Y1937Y1938Y1336Y1934
YENT393305 YE3303YE1058YE2171YE2170YE2169YE2168YE1059YE2172
XORY360094 XOOORF_3910XOOORF_3907XOOORF_3908XOOORF_3909XOOORF_3910XOOORF_2182XOOORF_2182
XORY342109 XOO1285XOO1288XOO1287XOO1286XOO1285XOO2295XOO2295
XORY291331 XOO1402XOO1405XOO1404XOO1403XOO1402XOO2417XOO2417
XFAS405440 XFASM12_0815XFASM12_0818XFASM12_0817XFASM12_0816XFASM12_0815XFASM12_2134XFASM12_2134
XFAS183190 PD_0690PD_0693PD_0692PD_0691PD_0690PD_1946PD_1946
XFAS160492 XF1473XF1476XF1475XF1474XF1473XF2562XF2562
XCAM487884 XCC-B100_1392XCC-B100_1395XCC-B100_1394XCC-B100_1393XCC-B100_1392XCC-B100_2698XCC-B100_2698
XCAM316273 XCAORF_3134XCAORF_3131XCAORF_3132XCAORF_3133XCAORF_3134XCAORF_1841XCAORF_1841
XCAM314565 XC_1344XC_1347XC_1346XC_1345XC_1344XC_2672XC_2672
XCAM190485 XCC2769XCC2766XCC2767XCC2768XCC2769XCC1562XCC1562
XAXO190486 XAC2938XAC2935XAC2936XAC2937XAC2938XAC1619XAC1619
XAUT78245 XAUT_0087XAUT_4469XAUT_4468XAUT_4467XAUT_4466XAUT_4614XAUT_4243
TTUR377629 TERTU_2644TERTU_1588TERTU_2647TERTU_2646TERTU_2645TERTU_2644TERTU_2643TERTU_2643
TTHE300852 TTHA1735TTHA1736TTHA1839TTHA1838TTHA1840TTHA1735TTHA1635
TTHE262724 TT_C1373TT_C1374TT_C1488TT_C1487TT_C1489TT_C1373TT_C1272
TERY203124 TERY_4358TERY_4135TERY_4355TERY_4356TERY_4357TERY_4358TERY_3951TERY_4144
TELO197221 TLR2068TLL1093TLL0490TLR1904TLR1905TLR2068TLL0867TLL0867
TCRU317025 TCR_0582TCR_0579TCR_0580TCR_0581TCR_0582TCR_0618TCR_0618
STYP99287 STM2984STM2542STM1370STM1371STM1372STM1373STM2541STM1369
STHE292459 STH2037STH2038STH2034STH2035STH2036STH983STH983
SSP644076 SCH4B_2352SCH4B_2359SCH4B_2356SCH4B_2355SCH4B_2352SCH4B_4089SCH4B_4089
SSP321332 CYB_1997CYB_0420CYB_1405CYB_1403CYB_1402CYB_1997CYB_1638CYB_1638
SSP321327 CYA_0391CYA_1825CYA_2190CYA_2193CYA_2194CYA_0391CYA_1655CYA_1655
SSP292414 TM1040_1249TM1040_1242TM1040_1245TM1040_1246TM1040_1249TM1040_0765TM1040_0765
SSP1148 SLR0077SLR0074SLR0075SLR0076SLR0077SLR1417SLR1417
SSON300269 SSO_2967SSO_2611SSO_1473SSO_1474SSO_1475SSO_1476SSO_2610SSO_1472
SRUB309807 SRU_1384SRU_1387SRU_1386SRU_1385SRU_1384SRU_1318SRU_1318
SPRO399741 SPRO_3807SPRO_3626SPRO_2180SPRO_2181SPRO_2182SPRO_2183SPRO_3625SPRO_2179
SMEL266834 SMC00533SMC00530SMC00531SMC00532SMC00533SMC00301SMC00301
SMED366394 SMED_1465SMED_1468SMED_1467SMED_1466SMED_1465SMED_1463SMED_1463
SLAC55218 SL1157_2883SL1157_2890SL1157_2887SL1157_2886SL1157_2883SL1157_3050SL1157_3050
SHIGELLA S3019S2748YNHEYNHDYNHCS1842YFHFYDIC
SGLO343509 SG1957SG1432SG1433SG1434SG1435SG1431SG1431
SFLE373384 SFV_2889SFV_2577SFV_1706SFV_1705SFV_1704SFV_1703SFV_2576SFV_1707
SFLE198214 AAN44311.1AAN44075.1AAN43289.1AAN43288.1AAN43287.1AAN44074.1AAN43290.1
SEPI176280 SE_0608SE_0609SE_0610SE_0606SE_0607SE_0608SE_0634
SENT454169 SEHA_C3195SEHA_C2804SEHA_C1502SEHA_C1503SEHA_C1504SEHA_C1505SEHA_C2803SEHA_C1501
SENT321314 SCH_2924SCH_2536SCH_1390SCH_1391SCH_1392SCH_1393SCH_2535SCH_1389
SENT220341 STY3124STY2788STY1753STY1752STY1751STY1750STY2787STY1754
SENT209261 T2892T0314T1238T1239T1240T1241T0315T1237
SDYS300267 SDY_3028SDY_2725SDY_1914SDY_1913SDY_1912SDY_1911SDY_2724SDY_2724
SDEG203122 SDE_1417SDE_1414SDE_1415SDE_1416SDE_1417SDE_1418SDE_1418
SBOY300268 SBO_2693SBO_2553SBO_1447SBO_1448SBO_1449SBO_1450SBO_2552SBO_1446
SALA317655 SALA_0669SALA_0674SALA_0671SALA_0670SALA_0669SALA_0667SALA_0667
RXYL266117 RXYL_0166RXYL_1354RXYL_0170RXYL_0171RXYL_0168RXYL_0166RXYL_2772RXYL_2772
RSPH349102 RSPH17025_2356RSPH17025_2362RSPH17025_2360RSPH17025_2359RSPH17025_0754RSPH17025_0344RSPH17025_0344
RSPH349101 RSPH17029_2088RSPH17029_2094RSPH17029_2092RSPH17029_2091RSPH17029_2088RSPH17029_0599RSPH17029_0599
RSPH272943 RSP_0431RSP_0440RSP_0437RSP_0440RSP_0431RSP_1948RSP_1948
RRUB269796 RRU_A2570RRU_A2573RRU_A2572RRU_A2571RRU_A2570RRU_A2568RRU_A2271
RPOM246200 SPO_2014SPO_2023SPO_2018SPO_2017SPO_2014SPO_2620SPO_2620
RPAL316058 RPB_2990RPB_0980RPB_2994RPB_2992RPB_2991RPB_2990RPB_2752RPB_2988
RPAL316057 RPD_3227RPD_1084RPD_2456RPD_2457RPD_2458RPD_3227RPD_2797RPD_2461
RPAL316056 RPC_3637RPC_4452RPC_2841RPC_2839RPC_2838RPC_2837RPC_2506RPC_2835
RPAL316055 RPE_3186RPE_4522RPE_2968RPE_2966RPE_2965RPE_3186RPE_2629RPE_2962
RPAL258594 RPA1424RPA4609RPA2464RPA2465RPA2466RPA1424RPA2856RPA2470
RLEG216596 RL2578RL2582RL2580RL2579RL2578RL2576RL2576
RFER338969 RFER_1863RFER_2178RFER_1860RFER_1861RFER_1862RFER_1863RFER_2179RFER_2179
REUT381666 H16_B1515H16_A1159H16_B1512H16_B1513H16_B1514H16_B1515H16_A1160H16_A1160
RETL347834 RHE_CH02249RHE_CH02253RHE_CH02251RHE_CH02250RHE_CH02249RHE_CH01816RHE_CH02247
RDEN375451 RD1_2689RD1_2696RD1_2694RD1_2692RD1_2689RD1_2960RD1_2960
PSP296591 BPRO_4272BPRO_2179BPRO_4269BPRO_4270BPRO_4271BPRO_4272BPRO_2180BPRO_2180
PLUM243265 PLU0651PLU3282PLU2621PLU2620PLU2619PLU2618PLU3281PLU2622
PING357804 PING_1505PING_1325PING_1508PING_1507PING_1506PING_1505PING_1326PING_1326
OCAR504832 OCAR_6002OCAR_5999OCAR_6000OCAR_6001OCAR_6002OCAR_6004OCAR_6004
OANT439375 OANT_2252OANT_2255OANT_2254OANT_2253OANT_2252OANT_2247OANT_2353
NWIN323098 NWI_1661NWI_1664NWI_1663NWI_1662NWI_1661NWI_1809NWI_1659
NSP103690 ALR2495ALL1456ALR2492ALR2493ALR2494ALR2495ALL1431ALL1431
NPHA348780 NP0936ANP0940ANP3016ANP1504ANP3016ANP0936ANP2572ANP2572A
NOCE323261 NOC_2487NOC_2486NOC_2490NOC_2489NOC_2488NOC_2487NOC_1650NOC_1650
NMUL323848 NMUL_A0699NMUL_A0700NMUL_A0696NMUL_A0697NMUL_A0698NMUL_A0699NMUL_A0695NMUL_A0695
NHAM323097 NHAM_2325NHAM_2328NHAM_2327NHAM_2326NHAM_2325NHAM_1756NHAM_2323
NEUT335283 NEUT_1238NEUT_1241NEUT_1240NEUT_1239NEUT_1238NEUT_1242NEUT_1242
NEUR228410 NE1447NE1446NE1450NE1449NE1448NE0573NE1451NE1451
NARO279238 SARO_0199SARO_0195SARO_0197SARO_0198SARO_0199SARO_0201SARO_0155
MXAN246197 MXAN_1156MXAN_5002MXAN_1153MXAN_1154MXAN_1155MXAN_1156MXAN_5003MXAN_5003
MSP409 M446_5106M446_3582M446_5109M446_5108M446_5107M446_5106M446_4331M446_2468
MSP400668 MMWYL1_4450MMWYL1_1344MMWYL1_1345MMWYL1_1346MMWYL1_1347MMWYL1_1348MMWYL1_1348
MSP266779 MESO_1778MESO_1781MESO_1780MESO_1779MESO_1778MESO_1776MESO_1776
MMAR394221 MMAR10_1319MMAR10_1313MMAR10_1317MMAR10_1318MMAR10_1319MMAR10_1321MMAR10_1915
MLOT266835 MLR0021MLL5941MLR0016MLR0019MLR0020MLR0021MLR0024MLR0024
MEXT419610 MEXT_1178MEXT_3977MEXT_3978MEXT_3979MEXT_1178MEXT_3982MEXT_3392
MCAP243233 MCA_0989MCA_0248MCA_0992MCA_0991MCA_0990MCA_0989MCA_0250MCA_0250
MAQU351348 MAQU_3154MAQU_3151MAQU_3152MAQU_3153MAQU_3154MAQU_3155MAQU_3155
MAER449447 MAE_13900MAE_23090MAE_23080MAE_23070MAE_13900MAE_52040MAE_52040
LPNE400673 LPC_2695LPC_2694LPC_2698LPC_2697LPC_2696LPC_2695LPC_1184LPC_1184
LPNE297246 LPP0655LPP0656LPP0652LPP0653LPP0654LPP0655LPP1708LPP1708
LPNE297245 LPL0639LPL0636LPL0637LPL0638LPL0639LPL1708LPL1708
LPNE272624 LPG0604LPG0605LPG0601LPG0602LPG0603LPG0604LPG1744LPG1744
KPNE272620 GKPORF_B2500GKPORF_B2195GKPORF_B1265GKPORF_B1264GKPORF_B1263GKPORF_B1262GKPORF_B2194GKPORF_B1266
JSP290400 JANN_2355JANN_2364JANN_2359JANN_2358JANN_2355JANN_2525JANN_2525
ILOI283942 IL0151IL0154IL0153IL0152IL0151IL0150IL0150
HWAL362976 HQ3427AHQ3428AHQ1707AHQ1706AHQ1707AHQ3427AHQ2721AHQ2721A
HNEP81032 HNE_2614HNE_2619HNE_2616HNE_2615HNE_2614HNE_2612HNE_2051
HMUK485914 HMUK_1242HMUK_1252HMUK_2919HMUK_2918HMUK_2919HMUK_1242HMUK_2452HMUK_2452
HMAR272569 RRNAC3102RRNAC1829RRNAC1830RRNAC1829RRNAC3104RRNAC0274RRNAC0274
HHAL349124 HHAL_0536HHAL_0539HHAL_0538HHAL_0537HHAL_0536HHAL_1793HHAL_1793
HCHE349521 HCH_01412HCH_01416HCH_01414HCH_01413HCH_01412HCH_01411HCH_01411
GVIO251221 GLR1373GLR1374GLR1370GLR1371GLR1372GLR1373GLL4382GLL4382
GTHE420246 GTNG_2944GTNG_2943GTNG_2942GTNG_2946GTNG_2945GTNG_2944GTNG_2906
GOXY290633 GOX0095GOX0098GOX0097GOX0096GOX0095GOX1751GOX1751
GKAU235909 GK2993GK2992GK2991GK2995GK2994GK2993GK2956GK2956
FSP1855 FRANEAN1_2089FRANEAN1_2090FRANEAN1_2085FRANEAN1_2088FRANEAN1_2086FRANEAN1_2089FRANEAN1_6870FRANEAN1_6870
FSP106370 FRANCCI3_1664FRANCCI3_1665FRANCCI3_1660FRANCCI3_1663FRANCCI3_1661FRANCCI3_1664FRANCCI3_3121FRANCCI3_4477
FALN326424 FRAAL4559FRAAL4558FRAAL4563FRAAL4560FRAAL4562FRAAL4559FRAAL5127
ESP42895 ENT638_3256ENT638_3026ENT638_1761ENT638_1762ENT638_1763ENT638_1764ENT638_3025ENT638_1760
ELIT314225 ELI_12750ELI_12785ELI_12760ELI_12755ELI_12750ELI_12945ELI_12740
EFER585054 EFER_0257EFER_0643EFER_1369EFER_1370EFER_1371EFER_1372EFER_0644EFER_1368
ECOO157 Z4127Z3796YNHEYNHDYNHCZ2708YFHFYDIC
ECOL83334 ECS3670ECS3395ECS2390ECS2389ECS2388ECS2387ECS3394ECS2391
ECOL585397 ECED1_3264ECED1_2960ECED1_1882ECED1_1881ECED1_1880ECED1_1879ECED1_2959ECED1_1883
ECOL585057 ECIAI39_3232ECIAI39_2730ECIAI39_1375ECIAI39_1376ECIAI39_1377ECIAI39_1378ECIAI39_2729ECIAI39_1374
ECOL585056 ECUMN_3140ECUMN_2849ECUMN_1972ECUMN_1971ECUMN_1970ECUMN_1969ECUMN_2848ECUMN_1973
ECOL585055 EC55989_3089EC55989_2814EC55989_1850EC55989_1849EC55989_1848EC55989_1847EC55989_2813EC55989_1851
ECOL585035 ECS88_3079ECS88_2705ECS88_1733ECS88_1732ECS88_1731ECS88_1730ECS88_2704ECS88_1734
ECOL585034 ECIAI1_2920ECIAI1_2581ECIAI1_1735ECIAI1_1734ECIAI1_1733ECIAI1_1732ECIAI1_2580ECIAI1_1736
ECOL481805 ECOLC_0902ECOLC_1148ECOLC_1948ECOLC_1949ECOLC_1950ECOLC_1951ECOLC_1149ECOLC_1947
ECOL469008 ECBD_0912ECBD_1155ECBD_1962ECBD_1963ECBD_1964ECBD_1965ECBD_1156ECBD_1156
ECOL439855 ECSMS35_2951ECSMS35_2682ECSMS35_1513ECSMS35_1514ECSMS35_1515ECSMS35_1516ECSMS35_2681ECSMS35_1512
ECOL413997 ECB_02661ECB_02421ECB_01652ECB_01651ECB_01650ECB_01649ECB_02420ECB_01653
ECOL409438 ECSE_3070ECSE_2815ECSE_1806ECSE_1805ECSE_1804ECSE_1803ECSE_2814ECSE_1807
ECOL405955 APECO1_3722APECO1_3996APECO1_760APECO1_759APECO1_758APECO1_757APECO1_3997APECO1_761
ECOL364106 UTI89_C3183UTI89_C2851UTI89_C1875UTI89_C1874UTI89_C1873UTI89_C1872UTI89_C2850UTI89_C1876
ECOL362663 ECP_2793ECP_2534ECP_1630ECP_1629ECP_1628ECP_1627ECP_2533ECP_1631
ECOL331111 ECE24377A_3116ECE24377A_2814ECE24377A_1899ECE24377A_1898ECE24377A_1897ECE24377A_1896ECE24377A_2813ECE24377A_1900
ECOL316407 ECK2806:JW2781:B2810ECK2526:JW2513:B2529ECK1679:JW5273:B1683ECK1678:JW1672:B1682ECK1677:JW1671:B1681ECK1676:JW1670:B1680ECK2525:JW2512:B2528ECK1680:JW1674:B1684
ECOL199310 C3381C3055C2078C2077C2076C2075C3053C2079
ECAR218491 ECA1012ECA3236ECA1860ECA1861ECA1862ECA1863ECA3235ECA1859
DSHI398580 DSHI_1623DSHI_1631DSHI_1627DSHI_1626DSHI_1623DSHI_2349DSHI_2349
CSP78 CAUL_2593CAUL_2588CAUL_2591CAUL_2592CAUL_2593CAUL_2595CAUL_3125
CSP501479 CSE45_2234CSE45_2242CSE45_2238CSE45_2237CSE45_2234CSE45_1551CSE45_1551
CSAL290398 CSAL_1236CSAL_1233CSAL_1234CSAL_1235CSAL_1236CSAL_2849CSAL_2849
CPRO264201 PC0192PC0189PC0190PC0191PC0192PC1085PC1085
CJAP155077 CJA_1470CJA_1467CJA_1468CJA_1469CJA_1470CJA_1471CJA_1471
CHUT269798 CHU_0975CHU_0978CHU_0977CHU_0976CHU_1815CHU_2522CHU_2522
CBUR434922 COXBU7E912_1445COXBU7E912_1227COXBU7E912_1448COXBU7E912_1447COXBU7E912_1446COXBU7E912_1445COXBU7E912_1443
CBUR360115 COXBURSA331_A1512COXBURSA331_A1276COXBURSA331_A1515COXBURSA331_A1514COXBURSA331_A1513COXBURSA331_A1512COXBURSA331_A1510
CBUR227377 CBU_1357CBU_1128CBU_1360CBU_1359CBU_1358CBU_1357CBU_1355
CBLO291272 BPEN_373BPEN_370BPEN_371BPEN_372BPEN_373BPEN_369BPEN_369
CAULO CC1860CC1864CC1862CC1861CC1860CC1858CC1858
BTRI382640 BT_1182BT_1185BT_1184BT_1183BT_1182BT_1370BT_1370
BSUI470137 BSUIS_A0974BSUIS_A0971BSUIS_A0972BSUIS_A0973BSUIS_A0974BSUIS_A0980BSUIS_A0980
BSUI204722 BR_0934BR_0931BR_0932BR_0933BR_0934BR_0939BR_0939
BSUB BSU32690BSU32680BSU32670BSU32710BSU32700BSU32690BSU32160BSU32160
BSP376 BRADO5444BRADO5447BRADO3542BRADO3543BRADO3544BRADO5425BRADO3546
BQUI283165 BQ05980BQ05950BQ05960BQ05970BQ05980BQ07680BQ07680
BPUM315750 BPUM_2925BPUM_2924BPUM_2923BPUM_2927BPUM_2926BPUM_2925BPUM_2876
BPSE320373 BURPS668_A1904BURPS668_2598BURPS668_2703BURPS668_2704BURPS668_A1904BURPS668_2597BURPS668_2597
BPSE320372 BURPS1710B_B0434BURPS1710B_A2964BURPS1710B_A3066BURPS1710B_A3067BURPS1710B_B0434BURPS1710B_A2963BURPS1710B_A2963
BPSE272560 BPSS1341BPSL2288BPSL2369BPSL2370BPSS1341BPSL2287BPSL2287
BOVI236 GBOORF0961GBOORF0958GBOORF0959GBOORF0960GBOORF0961GBOORF0966GBOORF0966
BMEL359391 BAB1_0951BAB1_0948BAB1_0949BAB1_0950BAB1_0951BAB1_0956BAB1_0956
BMEL224914 BMEI1039BMEI1042BMEI1041BMEI1040BMEI1039BMEI1034BMEI1091
BMAL320389 BMA10247_A1407BMA10247_1488BMA10247_1712BMA10247_1713BMA10247_A1407BMA10247_1487BMA10247_1487
BMAL320388 BMASAVP1_0448BMASAVP1_A2216BMASAVP1_A2399BMASAVP1_A2400BMASAVP1_0448BMASAVP1_A2215BMASAVP1_A2215
BLIC279010 BL02164BL02163BL02162BL02166BL02165BL02164BL03149
BJAP224911 BLR4342BLR4339BLR4340BLR4341BLR4342BLR4759BLR4759
BHEN283166 BH08610BH08640BH08630BH08620BH08610BH09960BH09960
BCIC186490 BCI_0462BCI_0465BCI_0464BCI_0463BCI_0462BCI_0466BCI_0466
BCER315749 BCER98_3577BCER98_3576BCER98_3575BCER98_3579BCER98_3578BCER98_3577BCER98_3544
BCAN483179 BCAN_A0945BCAN_A0942BCAN_A0943BCAN_A0944BCAN_A0945BCAN_A0951BCAN_A0951
BBAC360095 BARBAKC583_0813BARBAKC583_0810BARBAKC583_0811BARBAKC583_0812BARBAKC583_0813BARBAKC583_0751BARBAKC583_0751
BAMY326423 RBAM_029770RBAM_029760RBAM_029750RBAM_029790RBAM_029780RBAM_029770RBAM_029270RBAM_029270
BABO262698 BRUAB1_0943BRUAB1_0940BRUAB1_0941BRUAB1_0942BRUAB1_0943BRUAB1_0948BRUAB1_0948
AVAR240292 AVA_0427AVA_3915AVA_0424AVA_0425AVA_0426AVA_0427AVA_3939AVA_3939
AEHR187272 MLG_0728MLG_0725MLG_0726MLG_0727MLG_0728MLG_1247MLG_1247
ADEH290397 ADEH_0846ADEH_0593ADEH_0843ADEH_0844ADEH_0845ADEH_0846ADEH_0594ADEH_0594
ACAU438753 AZC_1047AZC_3615AZC_3614AZC_3613AZC_3612AZC_2808AZC_3609
ABOR393595 ABO_1868ABO_1865ABO_1866ABO_1867ABO_1868ABO_1869ABO_1869


Organism features enriched in list (features available for 164 out of the 178 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00012171292
Disease:Brucellosis 0.001685155
Disease:Bubonic_plague 0.000463566
Disease:Dysentery 0.000463566
Disease:Gastroenteritis 0.0090892813
Disease:Legionnaire's_disease 0.006097844
Endospores:No 3.763e-930211
GC_Content_Range4:0-40 3.742e-2114213
GC_Content_Range4:40-60 6.802e-686224
GC_Content_Range4:60-100 7.586e-764145
GC_Content_Range7:0-30 1.722e-6147
GC_Content_Range7:30-40 1.027e-1313166
GC_Content_Range7:50-60 8.669e-955107
GC_Content_Range7:60-70 1.099e-660134
Genome_Size_Range5:0-2 6.536e-214155
Genome_Size_Range5:4-6 8.816e-1490184
Genome_Size_Range9:0-1 0.0011812127
Genome_Size_Range9:1-2 3.309e-173128
Genome_Size_Range9:2-3 0.002226122120
Genome_Size_Range9:3-4 0.00246973277
Genome_Size_Range9:4-5 8.440e-95196
Genome_Size_Range9:5-6 0.00018343988
Gram_Stain:Gram_Neg 1.485e-13132333
Gram_Stain:Gram_Pos 5.071e-1212150
Habitat:Terrestrial 0.00267351631
Motility:No 2.068e-1113151
Motility:Yes 3.207e-7102267
Optimal_temp.:- 0.007073684257
Optimal_temp.:25-30 3.873e-61519
Oxygen_Req:Aerobic 0.001073467185
Oxygen_Req:Anaerobic 5.629e-142102
Oxygen_Req:Facultative 0.000282074201
Salinity:Non-halophilic 0.005699220106
Shape:Coccus 2.773e-6782
Shape:Rod 9.298e-10129347
Shape:Spiral 0.0039946334



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 106
Effective number of orgs (counting one per cluster within 468 clusters): 91

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17401
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SACI56780 ncbi Syntrophus aciditrophicus SB1
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PHOR70601 ncbi Pyrococcus horikoshii OT31
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma0
PABY272844 ncbi Pyrococcus abyssi GE51
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR267377 ncbi Methanococcus maripaludis S21
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GURA351605 ncbi Geobacter uraniireducens Rf41
GSUL243231 ncbi Geobacter sulfurreducens PCA1
GMET269799 ncbi Geobacter metallireducens GS-151
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRED349161 ncbi Desulfotomaculum reducens MI-11
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DETH243164 ncbi Dehalococcoides ethenogenes 1951
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS1
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CNOV386415 ncbi Clostridium novyi NT1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CFET360106 ncbi Campylobacter fetus fetus 82-401
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
BTUR314724 ncbi Borrelia turicatae 91E1350
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR234826 ncbi Anaplasma marginale St. Maries1
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G7454   G7324   G6909   G6908   G6907   G6906   EG12132   EG11378   
WSUC273121 WS2205
UURE95667
UURE95664
UPAR505682
TLET416591 TLET_0717
TKOD69014 TK0731
TDEN326298 TMDEN_2007
SWOL335541
SFUM335543 SFUM_2684
SACI56780 SYN_01182
PTHE370438 PTH_1055
PLUT319225 PLUT_0236
PHOR70601 PH1384
PCAR338963 PCAR_0051
PAST100379
PABY272844 PAB1855
NSEN222891 NSE_0302
MTHE264732 MOTH_1651
MTHE187420 MTH1149
MSYN262723
MPUL272635
MPNE272634
MMYC272632
MMOB267748
MMAZ192952 MM1954
MMAR444158
MMAR426368
MMAR402880
MMAR267377 MMP1168
MLAB410358 MLAB_0265
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_0288
MBAR269797 MBAR_A2425
MART243272
MAEO419665
MACE188937 MA2717
LINT363253 LI0266
LGAS324831
LBRE387344
LACI272621
HPYL85963 JHP0207
HPYL357544 HPAG1_0223
HPY HP0221
HMOD498761 HM1_1865
HHEP235279 HH_0563
HACI382638 HAC_1497
GURA351605 GURA_1832
GSUL243231 GSU_2012
GMET269799 GMET_0991
FNUC190304 FN0059
DVUL882 DVU_0665
DSP255470 CBDBA906
DSP216389 DEHABAV1_0835
DRED349161 DRED_0765
DPSY177439 DP2230
DOLE96561 DOLE_0755
DHAF138119 DSY2425
DETH243164 DET_0951
DDES207559 DDE_3078
CTET212717 CTC_01051
CTEP194439 CT_1994
CPER289380 CPR_1754
CPER195103 CPF_2038
CPER195102 CPE1784
CNOV386415 NT01CX_2282
CMET456442 MBOO_2126
CKOR374847 KCR_0890
CJEJ407148 C8J_0217
CJEJ360109 JJD26997_0237
CJEJ354242 CJJ81176_0264
CJEJ195099 CJE_0290
CJEJ192222 CJ0239C
CHYD246194 CHY_2198
CHOM360107 CHAB381_0043
CFET360106 CFF8240_1697
CDIF272563 CD1280
CDES477974
CCUR360105 CCV52592_1771
CCON360104 CCC13826_1162
CCHL340177 CAG_0207
CBOT536232 CLM_2874
CBOT515621 CLJ_B2797
CBOT508765 CLL_A1170
CBOT498213 CLD_1998
CBOT441772 CLI_2630
CBOT441771 CLC_2439
CBOT441770 CLB_2508
CBOT36826 CBO2567
BTUR314724
BHER314723
BGAR290434
BBUR224326
BAFZ390236
AYEL322098
AURANTIMONAS
AORE350688 CLOS_1669
AMET293826 AMET_2454
AMAR234826 AM654
AAEO224324 AQ_896


Organism features enriched in list (features available for 101 out of the 106 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Singles 0.000023568286
Disease:Botulism 0.000143655
Disease:Gas_gangrene 0.005072133
Endospores:No 0.000469251211
Endospores:Yes 0.00105731853
GC_Content_Range4:0-40 1.563e-760213
GC_Content_Range4:60-100 1.345e-94145
GC_Content_Range7:0-30 5.414e-153147
GC_Content_Range7:60-70 1.472e-84134
Genome_Size_Range5:0-2 5.408e-1053155
Genome_Size_Range5:4-6 1.615e-613184
Genome_Size_Range9:0-1 4.964e-71627
Genome_Size_Range9:1-2 0.000088337128
Genome_Size_Range9:5-6 0.0000201388
Gram_Stain:Gram_Neg 0.009034048333
Optimal_temp.:- 0.005897534257
Optimal_temp.:35-40 0.005072133
Optimal_temp.:37 0.000016934106
Oxygen_Req:Aerobic 1.785e-810185
Oxygen_Req:Anaerobic 3.455e-2558102
Oxygen_Req:Facultative 0.000010617201
Oxygen_Req:Microaerophilic 2.774e-61218
Shape:Coccus 0.0010803582
Shape:Irregular_coccus 4.124e-91417
Shape:Rod 1.713e-639347
Shape:Sphere 5.050e-81419
Shape:Spiral 1.947e-92134



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 20
Effective number of orgs (counting one per cluster within 468 clusters): 19

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
HWAL362976 ncbi Haloquadratum walsbyi DSM 16790 3.648e-64618
NPHA348780 ncbi Natronomonas pharaonis DSM 2160 3.844e-64648
HMUK485914 ncbi Halomicrobium mukohataei DSM 12286 0.00001675578
TELO197221 ncbi Thermosynechococcus elongatus BP-1 0.00062688748
FSP106370 ncbi Frankia sp. CcI3 0.00066828818
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS 0.0007939644
TERY203124 ncbi Trichodesmium erythraeum IMS101 0.00119379478
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE25 0.00120625737
SSP321327 ncbi Synechococcus sp. JA-3-3Ab 0.00122449508
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13) 0.00130979588
HMAR272569 ncbi Haloarcula marismortui ATCC 43049 0.00279596477
FSP1855 Frankia sp. EAN1pec 0.003531510848
BCIC186490 Candidatus Baumannia cicadellinicola 0.00374656757
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN 0.00444826927
HSP64091 ncbi Halobacterium sp. NRC-1 0.00473614176
BQUI283165 ncbi Bartonella quintana Toulouse 0.00568177177
BBAC360095 ncbi Bartonella bacilliformis KC583 0.00573667187
HSAL478009 ncbi Halobacterium salinarum R1 0.00615724366
GVIO251221 ncbi Gloeobacter violaceus PCC 7421 0.007267311868
NSP103690 ncbi Nostoc sp. PCC 7120 0.008763612148


Names of the homologs of the genes in the group in each of these orgs
  G7454   G7324   G6909   G6908   G6907   G6906   EG12132   EG11378   
HWAL362976 HQ3427AHQ3428AHQ1707AHQ1706AHQ1707AHQ3427AHQ2721AHQ2721A
NPHA348780 NP0936ANP0940ANP3016ANP1504ANP3016ANP0936ANP2572ANP2572A
HMUK485914 HMUK_1242HMUK_1252HMUK_2919HMUK_2918HMUK_2919HMUK_1242HMUK_2452HMUK_2452
TELO197221 TLR2068TLL1093TLL0490TLR1904TLR1905TLR2068TLL0867TLL0867
FSP106370 FRANCCI3_1664FRANCCI3_1665FRANCCI3_1660FRANCCI3_1663FRANCCI3_1661FRANCCI3_1664FRANCCI3_3121FRANCCI3_4477
CSUL444179 SMGWSS_195SMGWSS_196SMGWSS_197SMGWSS_198
TERY203124 TERY_4358TERY_4135TERY_4355TERY_4356TERY_4357TERY_4358TERY_3951TERY_4144
CPRO264201 PC0192PC0189PC0190PC0191PC0192PC1085PC1085
SSP321327 CYA_0391CYA_1825CYA_2190CYA_2193CYA_2194CYA_0391CYA_1655CYA_1655
SSP321332 CYB_1997CYB_0420CYB_1405CYB_1403CYB_1402CYB_1997CYB_1638CYB_1638
HMAR272569 RRNAC3102RRNAC1829RRNAC1830RRNAC1829RRNAC3104RRNAC0274RRNAC0274
FSP1855 FRANEAN1_2089FRANEAN1_2090FRANEAN1_2085FRANEAN1_2088FRANEAN1_2086FRANEAN1_2089FRANEAN1_6870FRANEAN1_6870
BCIC186490 BCI_0462BCI_0465BCI_0464BCI_0463BCI_0462BCI_0466BCI_0466
CBLO291272 BPEN_373BPEN_370BPEN_371BPEN_372BPEN_373BPEN_369BPEN_369
HSP64091 VNG2471GVNG2472GVNG0525CVNG0524GVNG0527CVNG2471G
BQUI283165 BQ05980BQ05950BQ05960BQ05970BQ05980BQ07680BQ07680
BBAC360095 BARBAKC583_0813BARBAKC583_0810BARBAKC583_0811BARBAKC583_0812BARBAKC583_0813BARBAKC583_0751BARBAKC583_0751
HSAL478009 OE4463FOE4465FOE1782FOE1781FOE1783FOE4463F
GVIO251221 GLR1373GLR1374GLR1370GLR1371GLR1372GLR1373GLL4382GLL4382
NSP103690 ALR2495ALL1456ALR2492ALR2493ALR2494ALR2495ALL1431ALL1431


Organism features enriched in list (features available for 18 out of the 20 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Filaments 0.0024784310
Habitat:Specialized 0.0028633653
Salinity:Extreme_halophilic 3.116e-757
Temp._range:Mesophilic 0.00193649473



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-4041 (γ-glutamyl cycle)2791460.4736
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951170.4696
GALACTCAT-PWY (D-galactonate degradation)104780.4601
PWY-5918 (heme biosynthesis I)2721410.4534
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861440.4441
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391590.4433
GLYCOCAT-PWY (glycogen degradation I)2461300.4340
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96710.4288
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491280.4124
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491280.4124
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149920.4117
GALACTITOLCAT-PWY (galactitol degradation)73580.4103



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7324   G6909   G6908   G6907   G6906   EG12132   EG11378   
G74540.9992480.9998570.9998910.9999140.9999810.9987750.998525
G73240.9994050.9993340.999350.9994840.9998450.999782
G69090.9999980.9999920.9999370.9990190.999388
G69080.9999990.9999620.9990070.999386
G69070.9999740.9990350.999391
G69060.9988850.999316
EG121320.999958
EG11378



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PAIRWISE BLAST SCORES:

  G7454   G7324   G6909   G6908   G6907   G6906   EG12132   EG11378   
G74540.0f0----1.1e-81--
G7324-0.0f0------
G6909--0.0f0-----
G6908---0.0f0----
G6907----0.0f0---
G6906-----0.0f0--
EG12132------0.0f02.2e-21
EG11378------1.7e-230.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-1341 (SufBCD Fe-S cluster scaffold complex) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.375, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9990 G6907 (sufD) G6907-MONOMER (SufD component of SufBCD Fe-S cluster scaffold complex)
   *in cand* 0.9997 0.9990 G6908 (sufC) G6908-MONOMER (SufC component of SufBCD Fe-S cluster scaffold complex)
   *in cand* 0.9997 0.9990 G6909 (sufB) G6909-MONOMER (SufB component of SufBCD Fe-S cluster scaffold complex)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9985 EG11378 (sufA) EG11378-MONOMER (Fe-S cluster assembly, scaffold protein)
   *in cand* 0.9993 0.9988 EG12132 (iscA) EG12132-MONOMER (iron-sulfur cluster assembly protein)
   *in cand* 0.9997 0.9989 G6906 (sufS) G6906-MONOMER (L-selenocysteine lyase (and L-cysteine desulfurase) monomer)
   *in cand* 0.9996 0.9992 G7324 (iscU) G7324-MONOMER (scaffold protein involved in iron-sulfur cluster assembly)
   *in cand* 0.9995 0.9985 G7454 (csdA) G7454-MONOMER (cysteine sulfinate desulfinase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11378 G6906 G6907 G6908 G6909 (centered at G6908)
EG12132 G7324 (centered at G7324)
G7454 (centered at G7454)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7454   G7324   G6909   G6908   G6907   G6906   EG12132   EG11378   
346/623366/623400/623411/623364/623376/623316/623300/623
AAEO224324:0:Tyes-0------
AAUR290340:2:Tyes--7327357330--
AAVE397945:0:Tyes-0----11
ABAC204669:0:Tyes-0----11041104
ABAU360910:0:Tyes-0----11
ABOR393595:0:Tyes3-012344
ABUT367737:0:Tyes-4210---
ACAU438753:0:Tyes0-259625952594259317792590
ACEL351607:0:Tyes--1801821811830-
ACRY349163:8:Tyes3-65430-
ADEH290397:0:Tyes253025025125225311
AEHR187272:0:Tyes3-0123517517
AFER243159:0:Tyes-1----00
AFUL224325:0:Tyes-0-1779----
AHYD196024:0:Tyes23790---237911
ALAI441768:0:Tyes-10432--
AMAR234826:0:Tyes-0------
AMAR329726:9:Tyes0-32104478-
AMET293826:0:Tyes-0------
ANAE240017:0:Tyes--201---
AORE350688:0:Tyes-0------
APER272557:0:Tyes--10----
APHA212042:0:Tyes-0----1-
APLE416269:0:Tyes1901----00
APLE434271:0:Tno2031----00
ASAL382245:5:Tyes02435---024342434
ASP1667:3:Tyes--8688718690--
ASP232721:2:Tyes-1697696--00
ASP62928:0:Tyes01684---016831683
ASP62977:0:Tyes1661---16600
ASP76114:2:Tyes022---02121
AVAR240292:3:Tyes33504012335283528
BABO262698:1:Tno3-012399
BAMB339670:3:Tno-1----00
BAMB398577:3:Tno-1----00
BAMY326423:0:Tyes50494852515000
BANT260799:0:Tno210432--
BANT261594:2:Tno210432--
BANT568206:2:Tyes210432--
BANT592021:2:Tno210432--
BAPH198804:0:Tyes-456----00
BAPH372461:0:Tyes-312-----0
BBAC264462:0:Tyes3-0123918-
BBAC360095:0:Tyes55-5253545500
BBRO257310:0:Tyes-0----11
BCAN483179:1:Tno3-012399
BCEN331271:0:Tno-0----11
BCEN331272:2:Tyes0----0--
BCEN331272:3:Tyes-1----00
BCER226900:1:Tyes210432--
BCER288681:0:Tno210432--
BCER315749:1:Tyes302928323130-0
BCER405917:1:Tyes210432--
BCER572264:1:Tno210432--
BCIC186490:0:Tyes0-321044
BCLA66692:0:Tyes210432--
BFRA272559:1:Tyes4-0234--
BFRA295405:0:Tno4-0234--
BHAL272558:0:Tyes-1043---
BHEN283166:0:Tyes0-3210122122
BJAP224911:0:Fyes3-0123427427
BLIC279010:0:Tyes484746504948-0
BLON206672:0:Tyes--201---
BMAL243160:0:Tno0----0--
BMAL243160:1:Tno-955-0--954954
BMAL320388:0:Tno0----0--
BMAL320388:1:Tno-1181182--00
BMAL320389:0:Tyes0----0--
BMAL320389:1:Tyes-1220221--00
BMEL224914:1:Tno6-9876059
BMEL359391:1:Tno3-012388
BOVI236:1:Tyes3-012388
BPAR257311:0:Tno-0----11
BPER257313:0:Tyes-0----11
BPET94624:0:Tyes-1----00
BPSE272560:0:Tyes0----0--
BPSE272560:1:Tyes-18182--00
BPSE320372:0:Tno0----0--
BPSE320372:1:Tno-1101102--00
BPSE320373:0:Tno0----0--
BPSE320373:1:Tno-1100101--00
BPUM315750:0:Tyes4847465049480-
BQUI283165:0:Tyes3-0123155155
BSP107806:2:Tyes-473-----0
BSP36773:1:Tyes0----0--
BSP36773:2:Tyes-1----00
BSP376:0:Tyes1811-181401217934
BSUB:0:Tyes55545357565500
BSUI204722:1:Tyes3-012388
BSUI470137:1:Tno3-012399
BTHA271848:1:Tno-7810--7979
BTHE226186:0:Tyes3-0123--
BTHU281309:1:Tno210432--
BTHU412694:1:Tno210432--
BTRI382640:1:Tyes0-3210179179
BVIE269482:5:Tyes-2-----0
BVIE269482:7:Tyes------0-
BWEI315730:4:Tyes210432--
BXEN266265:0:Tyes0-------
BXEN266265:1:Tyes-109---0111111
CABO218497:0:Tyes--012---
CACE272562:1:Tyes3-1023--
CAULO:0:Tyes2-643200
CBEI290402:0:Tyes7410739738740741--
CBLO203907:0:Tyes--123400
CBLO291272:0:Tno4-123400
CBOT36826:1:Tno-0------
CBOT441770:0:Tyes-0------
CBOT441771:0:Tno-0------
CBOT441772:1:Tno-0------
CBOT498213:1:Tno-0------
CBOT508765:1:Tyes-0------
CBOT515621:2:Tyes-0------
CBOT536232:0:Tno-0------
CBUR227377:1:Tyes2190222221220219-217
CBUR360115:1:Tno2200223222221220-218
CBUR434922:2:Tno2110214213212211-209
CCAV227941:1:Tyes--012---
CCHL340177:0:Tyes-0------
CCON360104:2:Tyes-0------
CCUR360105:0:Tyes-0------
CDIF272563:1:Tyes-0------
CDIP257309:0:Tyes-04231338-
CEFF196164:0:Fyes-04231--
CFEL264202:1:Tyes--210---
CFET360106:0:Tyes-0------
CGLU196627:0:Tyes-04231--
CHOM360107:1:Tyes-0------
CHUT269798:0:Tyes0-32183215261526
CHYD246194:0:Tyes-0------
CJAP155077:0:Tyes3-012344
CJEI306537:0:Tyes--3120--
CJEJ192222:0:Tyes-0------
CJEJ195099:0:Tno-0------
CJEJ354242:2:Tyes-0------
CJEJ360109:0:Tyes-0------
CJEJ407148:0:Tno-0------
CKLU431943:1:Tyes-4801023--
CKOR374847:0:Tyes-0------
CMAQ397948:0:Tyes--01----
CMET456442:0:Tyes-0------
CMIC31964:2:Tyes--5655625648590-
CMIC443906:2:Tyes--302484119-
CMUR243161:1:Tyes--012---
CNOV386415:0:Tyes-0------
CPEL335992:0:Tyes-4012-66
CPER195102:1:Tyes-0------
CPER195103:0:Tno-0------
CPER289380:3:Tyes-0------
CPHY357809:0:Tyes01210---0--
CPNE115711:1:Tyes--012---
CPNE115713:0:Tno--210---
CPNE138677:0:Tno--210---
CPNE182082:0:Tno--210---
CPRO264201:0:Fyes3-0123921921
CPSY167879:0:Tyes10610---106111
CRUT413404:0:Tyes-1----00
CSAL290398:0:Tyes3-012316441644
CSP501479:8:Fyes669-67767367266900
CSP78:2:Tyes5-03457549
CSUL444179:0:Tyes--0123--
CTEP194439:0:Tyes-0------
CTET212717:0:Tyes-0------
CTRA471472:0:Tyes--01----
CTRA471473:0:Tno--01----
CVES412965:0:Tyes-1----00
CVIO243365:0:Tyes-1----00
DARO159087:0:Tyes-0----11
DDES207559:0:Tyes-0------
DETH243164:0:Tyes-0------
DGEO319795:1:Tyes--120---
DHAF138119:0:Tyes-0------
DNOD246195:0:Tyes104321--
DOLE96561:0:Tyes-0------
DPSY177439:2:Tyes-0------
DRAD243230:3:Tyes--164016411635-0-
DRED349161:0:Tyes-0------
DSHI398580:5:Tyes0-8430740740
DSP216389:0:Tyes-0------
DSP255470:0:Tno-0------
DVUL882:1:Tyes-0------
ECAN269484:0:Tyes-1-----0
ECAR218491:0:Tyes022398578588598602238856
ECHA205920:0:Tyes-0----11
ECOL199310:0:Tno128696732109654
ECOL316407:0:Tno112485132108504
ECOL331111:6:Tno117088432108834
ECOL362663:0:Tno117290932109084
ECOL364106:1:Tno130897932109784
ECOL405955:2:Tyes120991832109174
ECOL409438:6:Tyes12931029321010284
ECOL413997:0:Tno102577832107774
ECOL439855:4:Tno14081151123411500
ECOL469008:0:Tno02511052105310541055252252
ECOL481805:0:Tno025610521053105410552571051
ECOL585034:0:Tno117084432108434
ECOL585035:0:Tno130694532109444
ECOL585055:0:Tno122495232109514
ECOL585056:2:Tno118288932108884
ECOL585057:0:Tno18551328123413270
ECOL585397:0:Tno13651062321010614
ECOL83334:0:Tno13171029321010284
ECOLI:0:Tno115487332108724
ECOO157:0:Tno128699432109934
EFAE226185:3:Tyes2104-2--
EFER585054:1:Tyes037810981099110011013791097
ELIT314225:0:Tyes2-9432410
ERUM254945:0:Tyes-0-----1
ERUM302409:0:Tno-0-----1
ESP42895:1:Tyes15071271123412700
FALN326424:0:Tyes105241561-
FJOH376686:0:Tyes0-6420--
FMAG334413:1:Tyes--101---
FNOD381764:0:Tyes--10----
FNUC190304:0:Tyes-0------
FPHI484022:1:Tyes--169016891688100
FRANT:0:Tno--3693703710-1
FSP106370:0:Tyes45031414462814
FSP1855:0:Tyes45031447114711
FSUC59374:0:Tyes0-22603663670--
FTUL351581:0:Tno--21087-86
FTUL393011:0:Tno--21078-77
FTUL393115:0:Tyes--3673683690-1
FTUL401614:0:Tyes--98991000-1
FTUL418136:0:Tno--012447-446
FTUL458234:0:Tno--21078-77
GBET391165:0:Tyes3-65430-
GFOR411154:0:Tyes0-42106-
GKAU235909:1:Tyes37363539383700
GMET269799:1:Tyes-0------
GOXY290633:5:Tyes0-321016421642
GSUL243231:0:Tyes-0------
GTHE420246:1:Tyes383736403938-0
GURA351605:0:Tyes-0------
GVIO251221:0:Tyes34012330473047
HACI382638:1:Tyes-0------
HARS204773:0:Tyes-1----00
HAUR316274:2:Tyes210652--
HBUT415426:0:Tyes--01----
HCHE349521:0:Tyes1-532100
HDUC233412:0:Tyes0541----542542
HHAL349124:0:Tyes0-321012701270
HHEP235279:0:Tyes-0------
HINF281310:0:Tyes11971----00
HINF374930:0:Tyes5360----11
HINF71421:0:Tno9021----00
HMAR272569:8:Tyes-2531141014111410253300
HMOD498761:0:Tyes-0------
HMUK485914:1:Tyes010169116901691012191219
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