CANDIDATE ID: 206

CANDIDATE ID: 206

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9925586e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    3.7500000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7546 (glcC) (b2980)
   Products of gene:
     - G7546-MONOMER (GlcC transcriptional dual regulator)
     - MONOMER0-562 (GlcC-Glycolate transcriptional dual regulator)
       Regulatees:
        TU0-1962 (glcDEFGBA)
        TU0-1963 (glcC)

- G7542 (glcA) (b2975)
   Products of gene:
     - B2975-MONOMER (GlcA glycolate transporter)
       Reactions:
        (S)-lactate[periplasmic space] + H+[periplasmic space]  ->  (S)-lactate[cytosol] + H+[cytosol]

- G6178 (ykgG) (b0308)
   Products of gene:
     - G6178-MONOMER (predicted transporter)

- G6177 (ykgF) (b0307)
   Products of gene:
     - G6177-MONOMER (predicted amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain)

- G6176 (ykgE) (b0306)
   Products of gene:
     - G6176-MONOMER (predicted oxidoreductase)

- EG11962 (lldR) (b3604)
   Products of gene:
     - EG11962-MONOMER (LldR transcriptional repressor)
       Regulatees:
        TU164 (lldPRD)
     - CPLX0-7689 (LldR-L-lactose transcriptional activator)
       Regulatees:
        TU164 (lldPRD)

- EG11961 (lldP) (b3603)
   Products of gene:
     - LCTP-MONOMER (LldP lactate transporter)
       Reactions:
        (S)-lactate[periplasmic space] + H+[periplasmic space]  ->  (S)-lactate[cytosol] + H+[cytosol]

- EG11088 (pdhR) (b0113)
   Products of gene:
     - EG11088-MONOMER (PdhR transcriptional dual regulator)
       Regulatees:
        TU0-7806 (hemL)
        TU0-12943 (tomB-hha)
        TU00101 (cyoABCDE)
        TU00158 (ndh)
        TU0-1143 (yfiD)
        TU00151 (fecABCDE)
        TU00522 (pdhR-aceEF-lpdA)
     - MONOMER-59 (PdhR-pyruvate)



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 110
Effective number of orgs (counting one per cluster within 468 clusters): 71

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XAUT78245 ncbi Xanthobacter autotrophicus Py28
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
STHE292459 ncbi Symbiobacterium thermophilum IAM 148638
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0468
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB8
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23387
SCO ncbi Streptomyces coelicolor A3(2)7
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
SAVE227882 ncbi Streptomyces avermitilis MA-46807
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99418
RSP101510 ncbi Rhodococcus jostii RHA18
RSOL267608 ncbi Ralstonia solanacearum GMI10008
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111708
RMET266264 ncbi Ralstonia metallidurans CH348
REUT381666 ncbi Ralstonia eutropha H168
REUT264198 ncbi Ralstonia eutropha JMP1348
PTHE370438 ncbi Pelotomaculum thermopropionicum SI8
PSTU379731 ncbi Pseudomonas stutzeri A15018
PPRO298386 ncbi Photobacterium profundum SS98
PING357804 ncbi Psychromonas ingrahamii 378
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1258
PFLU220664 ncbi Pseudomonas fluorescens Pf-58
PFLU205922 ncbi Pseudomonas fluorescens Pf0-18
OIHE221109 ncbi Oceanobacillus iheyensis HTE8318
NMEN374833 ncbi Neisseria meningitidis 0534428
NMEN272831 ncbi Neisseria meningitidis FAM188
NMEN122587 ncbi Neisseria meningitidis Z24918
NMEN122586 ncbi Neisseria meningitidis MC588
NGON242231 ncbi Neisseria gonorrhoeae FA 10908
MTHE264732 ncbi Moorella thermoacetica ATCC 390738
MSME246196 ncbi Mycobacterium smegmatis MC2 1558
MMAG342108 ncbi Magnetospirillum magneticum AMB-18
MAQU351348 ncbi Marinobacter aquaeolei VT88
HMOD498761 ncbi Heliobacterium modesticaldum Ice18
GURA351605 ncbi Geobacter uraniireducens Rf48
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-27
GSUL243231 ncbi Geobacter sulfurreducens PCA8
GKAU235909 ncbi Geobacillus kaustophilus HTA4268
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough8
DRED349161 ncbi Desulfotomaculum reducens MI-18
DHAF138119 ncbi Desulfitobacterium hafniense Y518
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G207
DARO159087 ncbi Dechloromonas aromatica RCB8
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29018
BWEI315730 ncbi Bacillus weihenstephanensis KBAB48
BVIE269482 ncbi Burkholderia vietnamiensis G48
BTHU412694 ncbi Bacillus thuringiensis Al Hakam8
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-278
BTHA271848 ncbi Burkholderia thailandensis E2648
BSUB ncbi Bacillus subtilis subtilis 1688
BSP36773 Burkholderia sp.8
BPUM315750 ncbi Bacillus pumilus SAFR-0327
BPSE320373 ncbi Burkholderia pseudomallei 6688
BPSE320372 ncbi Burkholderia pseudomallei 1710b8
BPSE272560 ncbi Burkholderia pseudomallei K962438
BMAL320389 ncbi Burkholderia mallei NCTC 102478
BMAL243160 ncbi Burkholderia mallei ATCC 233448
BLIC279010 ncbi Bacillus licheniformis ATCC 145808
BHAL272558 ncbi Bacillus halodurans C-1258
BCLA66692 ncbi Bacillus clausii KSM-K167
BCER572264 ncbi Bacillus cereus 03BB1028
BCER405917 Bacillus cereus W8
BCER315749 ncbi Bacillus cytotoxicus NVH 391-988
BCER288681 ncbi Bacillus cereus E33L8
BCER226900 ncbi Bacillus cereus ATCC 145798
BCEN331272 ncbi Burkholderia cenocepacia HI24248
BCEN331271 ncbi Burkholderia cenocepacia AU 10548
BANT592021 ncbi Bacillus anthracis A02488
BANT568206 ncbi Bacillus anthracis CDC 6848
BANT261594 ncbi Bacillus anthracis Ames Ancestor8
BANT260799 ncbi Bacillus anthracis Sterne8
BAMY326423 ncbi Bacillus amyloliquefaciens FZB428
BAMB398577 ncbi Burkholderia ambifaria MC40-68
BAMB339670 ncbi Burkholderia ambifaria AMMD8
ASP62928 ncbi Azoarcus sp. BH727
AHYD196024 Aeromonas hydrophila dhakensis8
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-18


Names of the homologs of the genes in the group in each of these orgs
  G7546   G7542   G6178   G6177   G6176   EG11962   EG11961   EG11088   
XAUT78245 XAUT_4351XAUT_4350XAUT_1767XAUT_1768XAUT_1769XAUT_3930XAUT_4350XAUT_4351
VVUL216895 VV1_1629VV2_0797VV2_0800VV2_0799VV2_0798VV1_1629VV2_0797VV1_1629
VVUL196600 VV2774VVA1261VVA1264VVA1263VVA1262VV2774VVA1261VV2774
STHE292459 STH97STH96STH93STH94STH95STH97STH96STH97
SSP94122 SHEWANA3_0425SHEWANA3_2904SHEWANA3_2907SHEWANA3_2906SHEWANA3_0425SHEWANA3_2904SHEWANA3_0425
SSON300269 SSO_0121SSO_3802SSO_0316SSO_0317SSO_0318SSO_3801SSO_3802SSO_0121
SSED425104 SSED_0430SSED_0907SSED_3923SSED_3924SSED_0430SSED_0907SSED_0430
SPEA398579 SPEA_0418SPEA_2994SPEA_2997SPEA_2996SPEA_0418SPEA_2994SPEA_0418
SONE211586 SO_0423SO_0827SO_1519SO_1520SO_0423SO_0827SO_0423
SLOI323850 SHEW_3432SHEW_3135SHEW_3005SHEW_3004SHEW_3432SHEW_3135SHEW_3432
SHIGELLA GLCCYGHKYKGGYKGFYKGELLDRYGHKPDHR
SHAL458817 SHAL_0475SHAL_3083SHAL_3086SHAL_3085SHAL_0475SHAL_3083SHAL_0475
SFUM335543 SFUM_1522SFUM_2879SFUM_0391SFUM_0080SFUM_0079SFUM_1522SFUM_2879SFUM_1522
SFLE373384 SFV_3035SFV_3928SFV_0319SFV_0318SFV_0317SFV_3927SFV_3928SFV_0104
SFLE198214 AAN44498.1AAN45089.1AAN41918.1AAN41919.1AAN41920.1AAN45090.1AAN45089.1AAN41774.1
SERY405948 SACE_3859SACE_4260SACE_3506SACE_3507SACE_3859SACE_4260SACE_3859
SCO SCO2442SCO3029SCO0816SCO0815SCO2442SCO3029SCO2442
SBAL402882 SHEW185_3935SHEW185_1340SHEW185_1337SHEW185_1338SHEW185_3935SHEW185_1340SHEW185_3935
SBAL399599 SBAL195_4055SBAL195_1377SBAL195_1374SBAL195_1375SBAL195_4055SBAL195_1377SBAL195_4055
SAVE227882 SAV7278SAV5047SAV7411SAV7412SAV7278SAV5047SAV1318
RXYL266117 RXYL_2589RXYL_1264RXYL_2993RXYL_2994RXYL_2995RXYL_2589RXYL_1264RXYL_2589
RSP101510 RHA1_RO02909RHA1_RO03235RHA1_RO03481RHA1_RO03480RHA1_RO03479RHA1_RO08849RHA1_RO03235RHA1_RO08849
RSOL267608 RSC1078RSC0981RSC1032RSC1612RSC1611RSC1078RSC0981RSC1078
RRUB269796 RRU_A1414RRU_A1409RRU_A3603RRU_A3605RRU_A3606RRU_A1414RRU_A1409RRU_A1414
RMET266264 RMET_5900RMET_5896RMET_2448RMET_1207RMET_1206RMET_5900RMET_5896RMET_5900
REUT381666 H16_B2456H16_B0090H16_A2588H16_A1391H16_A1390H16_B0094H16_B0090H16_B0094
REUT264198 REUT_B3714REUT_B5445REUT_A2283REUT_A1311REUT_A1310REUT_B5449REUT_B5445REUT_B5449
PTHE370438 PTH_2233PTH_2229PTH_2235PTH_2234PTH_2234PTH_2232PTH_2229PTH_2233
PSTU379731 PST_0430PST_3336PST_3339PST_3338PST_3337PST_3335PST_3336PST_3335
PPRO298386 PBPRA3197PBPRA1411PBPRA2360PBPRA2359PBPRA2358PBPRA3197PBPRA2223PBPRA3197
PING357804 PING_2928PING_1422PING_1419PING_1420PING_1690PING_2928PING_1422PING_2928
PHAL326442 PSHAA0390PSHAA0978PSHAA0975PSHAA0976PSHAA0977PSHAA0390PSHAA0978PSHAA0390
PFLU220664 PFL_2270PFL_0817PFL_0814PFL_0815PFL_0816PFL_0818PFL_0817PFL_0818
PFLU205922 PFL_0754PFL_0753PFL_0750PFL_0751PFL_0752PFL_0754PFL_0753PFL_0754
OIHE221109 OB0369OB0368OB0372OB0371OB0370OB0369OB0368OB0369
NMEN374833 NMCC_1623NMCC_0484NMCC_1347NMCC_1348NMCC_1346NMCC_1623NMCC_0484NMCC_1623
NMEN272831 NMC1629NMC0482NMC1372NMC1373NMC1371NMC1629NMC0482NMC1629
NMEN122587 NMA1965NMA0722NMA1649NMA1650NMA1648NMA1965NMA0722NMA1965
NMEN122586 NMB_1711NMB_0543NMB_1437NMB_1438NMB_1436NMB_1711NMB_0543NMB_1711
NGON242231 NGO1360NGO1449NGO0905NGO0906NGO0904NGO1360NGO1449NGO1360
MTHE264732 MOTH_2304MOTH_2303MOTH_2306MOTH_2305MOTH_2305MOTH_2304MOTH_2303MOTH_2304
MSME246196 MSMEG_0596MSMEG_6826MSMEG_0593MSMEG_0594MSMEG_0595MSMEG_2794MSMEG_6826MSMEG_2605
MMAG342108 AMB0238AMB4128AMB4131AMB4130AMB4129AMB0238AMB4128AMB0238
MAQU351348 MAQU_3306MAQU_0363MAQU_0366MAQU_0365MAQU_0364MAQU_0362MAQU_0363MAQU_0362
HMOD498761 HM1_3142HM1_0368HM1_0362HM1_0363HM1_0363HM1_3142HM1_0368HM1_3142
GURA351605 GURA_0158GURA_2200GURA_0153GURA_0152GURA_0152GURA_0158GURA_2200GURA_2197
GTHE420246 GTNG_0369GTNG_0370GTNG_0366GTNG_0367GTNG_0368GTNG_0370GTNG_0369
GSUL243231 GSU_1626GSU_1622GSU_1621GSU_1620GSU_1620GSU_1626GSU_1622GSU_1626
GKAU235909 GK0396GK0398GK0393GK0394GK0395GK2015GK0398GK2015
ECOO157 PDHRLLDPYKGGYKGFYKGELLDRLLDPPDHR
ECOL83334 ECS0117ECS4481ECS0346ECS0345ECS0344ECS4482ECS4481ECS0117
ECOL585397 ECED1_3623ECED1_4289ECED1_0346ECED1_0345ECED1_0344ECED1_4290ECED1_4289ECED1_0117
ECOL585057 ECIAI39_3468ECIAI39_4124ECIAI39_0377ECIAI39_0378ECIAI39_0379ECIAI39_4125ECIAI39_4124ECIAI39_0113
ECOL585056 ECUMN_3456ECUMN_3450ECUMN_0346ECUMN_0345ECUMN_0344ECUMN_4119ECUMN_3450ECUMN_0110
ECOL585055 EC55989_0106EC55989_4070EC55989_0310EC55989_0309EC55989_0308EC55989_4071EC55989_4070EC55989_0106
ECOL585035 ECS88_3355ECS88_4020ECS88_0309ECS88_0308ECS88_0307ECS88_4021ECS88_4020ECS88_0121
ECOL585034 ECIAI1_3122ECIAI1_3776ECIAI1_0305ECIAI1_0304ECIAI1_0303ECIAI1_3777ECIAI1_3776ECIAI1_0110
ECOL481805 ECOLC_0720ECOLC_0726ECOLC_3314ECOLC_3315ECOLC_3316ECOLC_0104ECOLC_0726ECOLC_3546
ECOL469008 ECBD_0758ECBD_0764ECBD_3349ECBD_3350ECBD_3351ECBD_0121ECBD_0764ECBD_3506
ECOL439855 ECSMS35_3258ECSMS35_3940ECSMS35_0340ECSMS35_0339ECSMS35_0338ECSMS35_3941ECSMS35_3940ECSMS35_0123
ECOL413997 ECB_02849ECB_03461ECB_00264ECB_00263ECB_00262ECB_03462ECB_03461ECB_00112
ECOL409438 ECSE_3258ECSE_3885ECSE_0325ECSE_0324ECSE_0323ECSE_3886ECSE_3885ECSE_0113
ECOL405955 APECO1_3447APECO1_2852APECO1_1686APECO1_1687APECO1_1688APECO1_2851APECO1_2852APECO1_1872
ECOL364106 UTI89_C3395UTI89_C4144UTI89_C0331UTI89_C0330UTI89_C0329UTI89_C4145UTI89_C4144UTI89_C0125
ECOL362663 ECP_3058ECP_3704ECP_0376ECP_0375ECP_0374ECP_3705ECP_3704ECP_0119
ECOL331111 ECE24377A_3440ECE24377A_4107ECE24377A_0323ECE24377A_0322ECE24377A_0321ECE24377A_4108ECE24377A_4107ECE24377A_0115
ECOL316407 ECK2975:JW2947:B2980ECK3593:JW3578:B3603ECK0307:JW5042:B0308ECK0306:JW0300:B0307ECK0305:JW5041:B0306ECK3594:JW3579:B3604ECK3593:JW3578:B3603ECK0112:JW0109:B0113
ECOL199310 C3710C4425C0424C0423C0422C4426C4425C0140
ECAR218491 ECA3790ECA1921ECA1918ECA1919ECA1920ECA3790ECA1921ECA3790
DVUL882 DVU_2785DVU_3284DVU_3032DVU_1782DVU_1783DVU_2785DVU_3284DVU_2785
DRED349161 DRED_2187DRED_2190DRED_0689DRED_0690DRED_0690DRED_2187DRED_2190DRED_2188
DHAF138119 DSY2275DSY2277DSY2093DSY2092DSY2091DSY2275DSY2276DSY2275
DDES207559 DDE_1074DDE_1844DDE_1843DDE_1842DDE_1244DDE_1074DDE_1244
DARO159087 DARO_1767DARO_1762DARO_0673DARO_0670DARO_0669DARO_1767DARO_1762DARO_1767
CVIO243365 CV_3037CV_3026CV_3028CV_3030CV_3037CV_3026CV_3037
CPSY167879 CPS_4809CPS_4690CPS_4688CPS_4689CPS_4809CPS_4690CPS_4809
CHYD246194 CHY_0434CHY_0431CHY_0435CHY_0436CHY_0436CHY_0434CHY_0431CHY_0434
BWEI315730 BCERKBAB4_1217BCERKBAB4_5019BCERKBAB4_1220BCERKBAB4_1219BCERKBAB4_1218BCERKBAB4_1217BCERKBAB4_5019BCERKBAB4_1217
BVIE269482 BCEP1808_2855BCEP1808_2859BCEP1808_1021BCEP1808_2858BCEP1808_2210BCEP1808_2855BCEP1808_2859BCEP1808_2855
BTHU412694 BALH_1164BALH_4726BALH_1167BALH_1166BALH_1165BALH_1164BALH_4726BALH_1164
BTHU281309 BT9727_1193BT9727_4909BT9727_1196BT9727_1195BT9727_1194BT9727_1193BT9727_4909BT9727_1193
BTHA271848 BTH_II2081BTH_II2077BTH_II2078BTH_II2079BTH_II2080BTH_II2081BTH_II2077BTH_II2081
BSUB BSU34180BSU34190BSU34030BSU34040BSU34050BSU34180BSU34190BSU34180
BSP36773 BCEP18194_B0034BCEP18194_A6084BCEP18194_A6082BCEP18194_A5436BCEP18194_A5437BCEP18194_B0034BCEP18194_A6084BCEP18194_A6080
BPUM315750 BPUM_3062BPUM_0278BPUM_1674BPUM_1673BPUM_1672BPUM_0278BPUM_3062
BPSE320373 BURPS668_A0554BURPS668_A0558BURPS668_A0557BURPS668_A0556BURPS668_A0555BURPS668_A0554BURPS668_A0558BURPS668_A0554
BPSE320372 BURPS1710B_B2204BURPS1710B_B2208BURPS1710B_B2207BURPS1710B_B2206BURPS1710B_B2205BURPS1710B_B2204BURPS1710B_B2208BURPS1710B_B2204
BPSE272560 BPSS0320BPSS0324BPSS0323BPSS0322BPSS0321BPSS0320BPSS0324BPSS0320
BMAL320389 BMA10247_A0866BMA10247_A0870BMA10247_A0869BMA10247_A0868BMA10247_A0867BMA10247_A0866BMA10247_A0870BMA10247_A0866
BMAL243160 BMA_A1432BMA_A1428BMA_A1429BMA_A1430BMA_A1431BMA_A1432BMA_A1428BMA_A1432
BLIC279010 BL03455BL03613BL03458BL03457BL03456BL03455BL03613BL03455
BHAL272558 BH1835BH1831BH1834BH1833BH1832BH1835BH1831BH1835
BCLA66692 ABC4039ABC0974ABC0977ABC0976ABC0975ABC0978ABC4038
BCER572264 BCA_1353BCA_5365BCA_1356BCA_1355BCA_1354BCA_1353BCA_5365BCA_1353
BCER405917 BCE_1415BCE_5342BCE_1418BCE_1417BCE_1416BCE_1415BCE_5342BCE_1415
BCER315749 BCER98_1023BCER98_3763BCER98_1026BCER98_1025BCER98_1024BCER98_1023BCER98_3763BCER98_1023
BCER288681 BCE33L1195BCE33L4924BCE33L1198BCE33L1197BCE33L1196BCE33L1195BCE33L4924BCE33L1195
BCER226900 BC_1302BC_5228BC_1305BC_1304BC_1303BC_1302BC_5228BC_1302
BCEN331272 BCEN2424_6710BCEN2424_3147BCEN2424_1101BCEN2424_2130BCEN2424_2131BCEN2424_6710BCEN2424_3147BCEN2424_6710
BCEN331271 BCEN_6475BCEN_2534BCEN_0622BCEN_5947BCEN_5946BCEN_6475BCEN_2534BCEN_6475
BANT592021 BAA_1381BAA_5493BAA_1384BAA_1383BAA_1382BAA_1381BAA_5493BAA_1381
BANT568206 BAMEG_3283BAMEG_5513BAMEG_3280BAMEG_3281BAMEG_3282BAMEG_3283BAMEG_5513BAMEG_3283
BANT261594 GBAA1314GBAA5464GBAA1317GBAA1316GBAA1315GBAA1314GBAA5464GBAA1314
BANT260799 BAS1215BAS5077BAS1218BAS1217BAS1216BAS1215BAS5077BAS1215
BAMY326423 RBAM_031490RBAM_031500RBAM_031450RBAM_031460RBAM_031470RBAM_031490RBAM_031500RBAM_031490
BAMB398577 BAMMC406_5490BAMMC406_2673BAMMC406_2671BAMMC406_2040BAMMC406_2041BAMMC406_5490BAMMC406_2673BAMMC406_2669
BAMB339670 BAMB_4937BAMB_2806BAMB_2804BAMB_2167BAMB_2168BAMB_4937BAMB_2806BAMB_2802
ASP62928 AZO1170AZO1165AZO1167AZO1169AZO1170AZO1165AZO1170
AHYD196024 AHA_3864AHA_2560AHA_2557AHA_2558AHA_2559AHA_3864AHA_2560AHA_3864
AEHR187272 MLG_2283MLG_2279MLG_2280MLG_2281MLG_2282MLG_2283MLG_2279MLG_2283


Organism features enriched in list (features available for 106 out of the 110 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.004051430112
Arrangment:Singles 0.005261441286
Disease:Anthrax 0.001042744
Disease:Melioidosis 0.005871733
Disease:Meningitis_and_septicemia 0.001042744
Endospores:No 0.000190523211
Endospores:Yes 8.213e-92753
GC_Content_Range4:0-40 8.124e-1013213
GC_Content_Range4:40-60 0.000013060224
GC_Content_Range7:30-40 9.109e-613166
GC_Content_Range7:50-60 9.012e-738107
Genome_Size_Range5:2-4 0.000538122197
Genome_Size_Range5:4-6 7.250e-1264184
Genome_Size_Range5:6-10 0.00003162047
Genome_Size_Range9:2-3 0.00004878120
Genome_Size_Range9:5-6 5.240e-114088
Genome_Size_Range9:6-8 0.00085031538
Habitat:Host-associated 0.000371523206
Habitat:Terrestrial 0.00001161631
Motility:No 0.000102913151
Motility:Yes 2.358e-772267
Optimal_temp.:30 0.0078379715
Oxygen_Req:Facultative 0.000021055201
Shape:Coccus 0.0018638682
Shape:Rod 9.198e-988347
Temp._range:Psychrophilic 0.001521769



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 272
Effective number of orgs (counting one per cluster within 468 clusters): 216

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252591
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4400
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93111
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SGOR29390 Streptococcus gordonii Challis0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB0
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30000
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a1
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NMUL323848 ncbi Nitrosospira multiformis ATCC 251961
NHAM323097 ncbi Nitrobacter hamburgensis X141
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C911
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath1
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-61
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HHAL349124 ncbi Halorhodospira halophila SL11
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GMET269799 ncbi Geobacter metallireducens GS-151
GFOR411154 ncbi Gramella forsetii KT08031
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB151
CABO218497 ncbi Chlamydophila abortus S26/30
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHEN283166 ncbi Bartonella henselae Houston-10
BCIC186490 Candidatus Baumannia cicadellinicola0
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7546   G7542   G6178   G6177   G6176   EG11962   EG11961   EG11088   
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WSUC273121 WS1750
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TTEN273068
TSP28240
TSP1755
TPSE340099
TPET390874
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800
TERY203124 TERY_2056
TELO197221 TLL1663
TDEN326298 TMDEN_0607
TDEN292415 TBD_0044
TDEN243275
TCRU317025
SWOL335541 SWOL_1012
STRO369723
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471 GSYN0229
SSP387093 SUN_2092
SSP321332 CYB_2175
SSP321327 CYA_0131
SSP1148 SLL1831
SSP1131 SYNCC9605_0159
SRUB309807
SPYO370554
SPYO370553
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SGOR29390
SELO269084 SYC2374_D
SARE391037
SALA317655
SAGA211110 GBS0672
SAGA208435 SAG_0699
SAGA205921 SAK_0825
SACI56780
RTYP257363
RSAL288705 RSAL33209_2323
RRIC452659
RRIC392021
RPRO272947
RPAL316055 RPE_4692
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PSYR223283
PSYR205918 PSYR_3333
PSP312153
PPEN278197
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PHOR70601
PFUR186497
PCRY335284 PCRYO_1888
PCAR338963 PCAR_2766
PAST100379
PARS340102 PARS_0485
PABY272844
OTSU357244
NWIN323098 NWI_2579
NSP387092 NIS_0367
NSP103690 ALL0623
NSEN222891
NMUL323848 NMUL_A0339
NHAM323097 NHAM_3202
NFAR247156 NFA24630
NEUT335283 NEUT_0446
NEUR228410 NE0673
NARO279238
MXAN246197
MTUB419947
MTUB336982
MTHE349307
MTBRV
MTBCDC
MSYN262723
MSTA339860 MSP_1044
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM0979
MMAR444158
MMAR426368
MMAR402880 MMARC5_0522
MMAR394221 MMAR10_0254
MMAR368407
MMAR267377 MMP1067
MLEP272631
MLAB410358
MKAN190192 MK0132
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MFLA265072
MCAP340047
MCAP243233 MCA_1499
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAER449447 MAE_44310
MAEO419665
MACE188937 MA4236
MABS561007
LXYL281090 LXX15885
LSAK314315
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668 LP_1814
LMES203120
LINT363253
LINT267671
LINT189518
LHEL405566
LDEL390333
LDEL321956
LCHO395495 LCHO_1172
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
KRAD266940 KRAD_4399
IHOS453591
HNEP81032
HMUK485914
HHAL349124 HHAL_0223
HAUR316274
GVIO251221 GLR3072
GMET269799 GMET_3246
GFOR411154 GFO_1158
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNOD381764
FMAG334413
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DSP255470
DSP216389
DOLE96561 DOLE_1222
DNOD246195
DETH243164
CVES412965 COSY_0296
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CRUT413404 RMAG_0315
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992 SAR11_0276
CMUR243161
CMIC443906
CMIC31964
CMAQ397948 CMAQ_1010
CKOR374847 KCR_0987
CJEI306537
CHOM360107
CGLU196627
CFEL264202
CEFF196164
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO CC0986
CABO218497
BTRI382640
BSP107806
BQUI283165
BLON206672
BHEN283166
BCIC186490
BBAC360095
BBAC264462
BAPH372461
BAPH198804
AYEL322098
AVAR240292 AVA_4555
AURANTIMONAS
APHA212042
AORE350688
AMAR234826
ALAI441768
AFER243159 AFE_1422
ACEL351607
ABOR393595
AAUR290340
AAEO224324


Organism features enriched in list (features available for 254 out of the 272 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.000521499
Arrangment:Clusters 0.0044122217
Arrangment:Pairs 1.732e-1020112
Disease:Pharyngitis 0.001218888
Disease:Wide_range_of_infections 0.00140561011
Disease:bronchitis_and_pneumonitis 0.001218888
Endospores:No 0.0000873113211
Endospores:Yes 3.311e-6853
GC_Content_Range4:0-40 1.054e-6120213
GC_Content_Range4:40-60 0.006619085224
GC_Content_Range4:60-100 0.001009448145
GC_Content_Range7:30-40 0.000025094166
GC_Content_Range7:50-60 0.000547632107
GC_Content_Range7:60-70 0.000710143134
Genome_Size_Range5:0-2 1.540e-24121155
Genome_Size_Range5:4-6 3.152e-1932184
Genome_Size_Range5:6-10 0.0000480847
Genome_Size_Range9:0-1 6.840e-72427
Genome_Size_Range9:1-2 4.819e-1797128
Genome_Size_Range9:4-5 1.877e-81896
Genome_Size_Range9:5-6 2.249e-91488
Genome_Size_Range9:6-8 0.0005469738
Habitat:Aquatic 0.00312415191
Habitat:Host-associated 0.0004418108206
Habitat:Multiple 0.000126158178
Habitat:Terrestrial 0.0025749631
Motility:No 7.926e-791151
Motility:Yes 1.636e-1079267
Optimal_temp.:30-35 0.002842177
Oxygen_Req:Anaerobic 0.006045855102
Oxygen_Req:Facultative 1.092e-661201
Pathogenic_in:Human 0.000977076213
Pathogenic_in:Plant 0.00349051215
Shape:Irregular_coccus 0.00094471417
Shape:Rod 3.035e-9117347
Shape:Sphere 0.00024151619



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 5
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
PTHE370438 ncbi Pelotomaculum thermopropionicum SI 0.004590211208
NGON242231 ncbi Neisseria gonorrhoeae FA 1090 0.007466311908
HMOD498761 ncbi Heliobacterium modesticaldum Ice1 0.007516811918
NMEN374833 ncbi Neisseria meningitidis 053442 0.008938912178
NMEN122586 ncbi Neisseria meningitidis MC58 0.009608112288


Names of the homologs of the genes in the group in each of these orgs
  G7546   G7542   G6178   G6177   G6176   EG11962   EG11961   EG11088   
PTHE370438 PTH_2233PTH_2229PTH_2235PTH_2234PTH_2234PTH_2232PTH_2229PTH_2233
NGON242231 NGO1360NGO1449NGO0905NGO0906NGO0904NGO1360NGO1449NGO1360
HMOD498761 HM1_3142HM1_0368HM1_0362HM1_0363HM1_0363HM1_3142HM1_0368HM1_3142
NMEN374833 NMCC_1623NMCC_0484NMCC_1347NMCC_1348NMCC_1346NMCC_1623NMCC_0484NMCC_1623
NMEN122586 NMB_1711NMB_0543NMB_1437NMB_1438NMB_1436NMB_1711NMB_0543NMB_1711


Organism features enriched in list (features available for 5 out of the 5 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Gonorrhea 0.008576311
Disease:Meningitis_and_septicemia 0.000350024
GC_Content_Range4:40-60 0.00814425224
GC_Content_Range7:50-60 0.00019275107
Genome_Size_Range5:2-4 0.00425845197
Genome_Size_Range9:2-3 0.00689404120
Optimal_temp.:35-37 0.0043410213
Optimal_temp.:50-52 0.008576311



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-6196 (serine racemization)102540.4095
GLUTAMINDEG-PWY (glutamine degradation I)191780.4042



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7542   G6178   G6177   G6176   EG11962   EG11961   EG11088   
G75460.9987830.9986150.9989360.9991840.9998420.9987250.999864
G75420.9991240.9992470.9993410.9993960.999970.999195
G61780.9998030.9997060.9986820.9991160.998793
G61770.9999060.9988950.9992350.998898
G61760.9990580.9993340.999099
EG119620.9993710.999865
EG119610.999181
EG11088



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PAIRWISE BLAST SCORES:

  G7546   G7542   G6178   G6177   G6176   EG11962   EG11961   EG11088   
G75460.0f0----5.4e-20-2.0e-22
G7542-0.0f0----0-
G6178--0.0f0-----
G6177---0.0f0----
G6176----0.0f0---
EG119621.6e-18----0.0f0-5.1e-31
EG11961-0----0.0f0-
EG110882.2e-21----1.5e-33-0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G6176 G6177 G6178 (centered at G6177)
EG11088 (centered at EG11088)
G7542 (centered at G7542)
G7546 (centered at G7546)
EG11961 EG11962 (centered at EG11962)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7546   G7542   G6178   G6177   G6176   EG11962   EG11961   EG11088   
232/623265/623155/623198/623274/623219/623261/623217/623
AAVE397945:0:Tyes-4404--0-4404-
ABAC204669:0:Tyes-0100210031004-0-
ABAU360910:0:Tyes----2750--
ABUT367737:0:Tyes-0345-0-
ACAU438753:0:Tyes7534226--07534226753
ACRY349163:8:Tyes--276927700---
ADEH290397:0:Tyes-0-21-0-
AEHR187272:0:Tyes40123404
AFER243159:0:Tyes----0---
AFUL224325:0:Tyes-296-3010-296-
AHYD196024:0:Tyes12363012123631236
AMAR329726:9:Tyes-2341--0-2341-
AMET293826:0:Tyes01---0-0
ANAE240017:0:Tyes-5023-5-
APER272557:0:Tyes--00----
APLE416269:0:Tyes-3012-3-
APLE434271:0:Tno-3012-3-
ASAL382245:5:Tyes0----0-0
ASP1667:3:Tyes-3328----33280
ASP232721:2:Tyes-0----0-
ASP62928:0:Tyes50-24505
ASP62977:0:Tyes10---101
ASP76114:2:Tyes--7701---
AVAR240292:3:Tyes----0---
BABO262698:0:Tno0---50-0
BABO262698:1:Tno-0----0-
BAFZ390236:2:Fyes-0----0-
BAMB339670:2:Tno0----0--
BAMB339670:3:Tno-65465201-654650
BAMB398577:2:Tno0----0--
BAMB398577:3:Tno-64364101-643639
BAMY326423:0:Tyes45012454
BANT260799:0:Tno03859321038590
BANT261594:2:Tno03839321038390
BANT568206:2:Tyes32132012321323
BANT592021:2:Tno04038321040380
BBRO257310:0:Tyes0880--18600-0
BBUR224326:21:Fno-0----0-
BCAN483179:0:Tno0---50-0
BCAN483179:1:Tno-0----0-
BCEN331271:0:Tno537--10537-537
BCEN331271:2:Tno-19300---1930-
BCEN331272:1:Tyes0----0-0
BCEN331272:3:Tyes-2041010271028-2041-
BCER226900:1:Tyes03836321038360
BCER288681:0:Tno03729321037290
BCER315749:1:Tyes02605321026050
BCER405917:1:Tyes03718321037180
BCER572264:1:Tno03934321039340
BCLA66692:0:Tyes308903214-3088
BFRA272559:1:Tyes-0-17791780-0-
BFRA295405:0:Tno-0-20172018-0-
BGAR290434:2:Fyes-0----0-
BHAL272558:0:Tyes32119210321193
BHER314723:0:Fyes-0----0-
BJAP224911:0:Fyes0703--7070703-
BLIC279010:0:Tyes34012343
BMAL243160:0:Tno40123404
BMAL320388:1:Tno--207318001801--0
BMAL320389:0:Tyes04321040
BMEL224914:0:Tno5---05-5
BMEL224914:1:Tno-0----0-
BMEL359391:0:Tno0---40-0
BMEL359391:1:Tno-0----0-
BOVI236:0:Tyes0----0-0
BOVI236:1:Tyes-0----0-
BPAR257311:0:Tno0753--22970-0
BPER257313:0:Tyes----0---
BPET94624:0:Tyes2161---02161-2161
BPSE272560:0:Tyes04321040
BPSE320372:0:Tno04321040
BPSE320373:0:Tno04321040
BPUM315750:0:Tyes28110141914181417-02811
BSP36773:1:Tyes0----0--
BSP36773:2:Tyes-65865601-658654
BSP376:0:Tyes-0--4-0-
BSUB:0:Tyes1516012151615
BSUI204722:0:Tyes0---50-0
BSUI204722:1:Tyes-0----0-
BSUI470137:0:Tno0---50-0
BSUI470137:1:Tno-0----0-
BTHA271848:0:Tno40123404
BTHE226186:0:Tyes-0-30543053-0-
BTHU281309:1:Tno03690321036900
BTHU412694:1:Tno03417321034170
BTUR314724:0:Fyes-0----0-
BVIE269482:7:Tyes18141818018171180181418181814
BWEI315730:4:Tyes03730321037300
BXEN266265:1:Tyes2--012-2
CACE272562:1:Tyes0----0-0
CAULO:0:Tyes0-------
CBEI290402:0:Tyes02535---371125354615
CBOT36826:1:Tno850---850491
CBOT441770:0:Tyes840---840488
CBOT441771:0:Tno840---840494
CBOT441772:1:Tno930---5110511
CBOT498213:1:Tno920---5200520
CBOT508765:1:Tyes0962----9620
CBOT515621:2:Tyes890---5560556
CBOT536232:0:Tno860---860576
CCUR360105:0:Tyes-0----0-
CDES477974:0:Tyes-0----0-
CDIF272563:1:Tyes0------2429
CDIP257309:0:Tyes-0-99699720450-
CFET360106:0:Tyes-0713712711-0-
CHUT269798:0:Tyes--0395807---
CHYD246194:0:Tyes30455303
CJAP155077:0:Tyes0744----744-
CJEJ192222:0:Tyes-3012-3-
CJEJ195099:0:Tno-3012-3-
CJEJ354242:2:Tyes-3012-3-
CJEJ360109:0:Tyes-3012-3-
CJEJ407148:0:Tno-3012-3-
CKLU431943:1:Tyes-----0-823
CKOR374847:0:Tyes---0----
CMAQ397948:0:Tyes---0----
CMET456442:0:Tyes-0----0-
CNOV386415:0:Tyes01---010
CPEL335992:0:Tyes----0---
CPER195102:1:Tyes-1---010
CPER195103:0:Tno-1---010
CPER289380:3:Tyes-1---01-
CPHY357809:0:Tyes-----0-2492
CPSY167879:0:Tyes1162-011162116
CRUT413404:0:Tyes----0---
CSAL290398:0:Tyes02336--2339023360
CSP501479:6:Fyes0----0-0
CSP501479:7:Fyes----0---
CSP78:2:Tyes0------411
CTET212717:0:Tyes01---010
CVES412965:0:Tyes----0---
CVIO243365:0:Tyes110-2411011
DARO159087:0:Tyes11141109410111411091114
DDES207559:0:Tyes-07837827811720172
DGEO319795:0:Tyes--210---
DHAF138119:0:Tyes186188210186187186
DOLE96561:0:Tyes----0---
DPSY177439:2:Tyes-0948947946---
DRAD243230:3:Tyes-13-2-10
DRED349161:0:Tyes15001503011150015031501
DSHI398580:5:Tyes133---0133-133
DVUL882:1:Tyes99614921242019961492996
ECAR218491:0:Tyes19023012190231902
ECOL199310:0:Tno34884194269268267419541940
ECOL316407:0:Tno28673554194193192355335540
ECOL331111:6:Tno31813833193192191383438330
ECOL362663:0:Tno29353576256255254357735760
ECOL364106:1:Tno32634005203202201400640050
ECOL405955:2:Tyes29423551190189188355235510
ECOL409438:6:Tyes32063843220219218384438430
ECOL413997:0:Tno27543371158157156337233710
ECOL439855:4:Tno30323699205204203370036990
ECOL469008:0:Tno63964532143215321606453378
ECOL481805:0:Tno61862432223223322406243455
ECOL585034:0:Tno29763620188187186362136200
ECOL585035:0:Tno31213773183182181377437730
ECOL585055:0:Tno03913201200199391439130
ECOL585056:2:Tno33513344232231230400933440
ECOL585057:0:Tno33664013259260261401440130
ECOL585397:0:Tno34004047209208207404840470
ECOL83334:0:Tno04465237236235446644650
ECOLI:0:Tno29312924200199198356135600
ECOO157:0:Tno04491233232231449244910
EFAE226185:3:Tyes--210---
EFER585054:1:Tyes03443---344434430
ESP42895:1:Tyes5391---01539
FALN326424:0:Tyes---01---
FJOH376686:0:Tyes---01---
FNUC190304:0:Tyes--011---
GBET391165:0:Tyes-0-15441542-0-
GFOR411154:0:Tyes-----0--
GKAU235909:1:Tyes35012166051660
GMET269799:1:Tyes----0---
GOXY290633:5:Tyes-739-10-739-
GSUL243231:0:Tyes62100626
GTHE420246:1:Tyes34012-43
GURA351605:0:Tyes62045100620452042
GVIO251221:0:Tyes----0---
HACI382638:1:Tyes-3012-3-
HARS204773:0:Tyes-1535--0-1535-
HBUT415426:0:Tyes--00----
HCHE349521:0:Tyes3-0123-3
HDUC233412:0:Tyes--012---
HHAL349124:0:Tyes----0---
HHEP235279:0:Tyes-0321-0-
HINF281310:0:Tyes0-----1204-
HINF374930:0:Tyes0-----504-
HINF71421:0:Tno0-----1134-
HMAR272569:7:Tyes-240-0--240-
HMOD498761:0:Tyes19430655194301943
HPY:0:Tno-3012-3-
HPYL357544:1:Tyes-3012-3-
HPYL85963:0:Tno-3012-3-
HSAL478009:2:Tyes-210--2-
HSOM205914:1:Tyes0694697696695-694-
HSOM228400:0:Tno7950321-0-
HSP64091:1:Tno-210--2-
HWAL362976:1:Tyes-0----0-
ILOI283942:0:Tyes0----0-0
JSP290400:1:Tyes978---0978-978
JSP375286:0:Tyes-2888--0-2777-
KPNE272620:2:Tyes23791328--0132913282379
KRAD266940:2:Fyes0-------
LACI272621:0:Tyes-0----0-
LCAS321967:1:Tyes--012---
LCHO395495:0:Tyes----0---
LGAS324831:0:Tyes-0----0-
LINN272626:1:Tno0----0-0
LJOH257314:0:Tyes-0----0-
LLAC272622:5:Tyes--1-0---
LLAC272623:0:Tyes--210---
LMON169963:0:Tno0----0-0
LMON265669:0:Tyes0------0
LPLA220668:0:Tyes-0------
LREU557436:0:Tyes--012---
LSPH444177:1:Tyes-605023-605-
LWEL386043:0:Tyes0----0-0
LXYL281090:0:Tyes0-------
MACE188937:0:Tyes---0----
MAER449447:0:Tyes----0---
MAQU351348:2:Tyes29101432010
MCAP243233:0:Tyes----0---
MEXT419610:0:Tyes-1600-10-1600-
MGIL350054:3:Tyes--3704370537060--
MKAN190192:0:Tyes----0---
MLOT266835:2:Tyes0---50-0
MMAG342108:0:Tyes03890389338923891038900
MMAR267377:0:Tyes----0---
MMAR394221:0:Tyes0-------
MMAR402880:1:Tyes----0---
MMAZ192952:0:Tyes---0----
MPET420662:1:Tyes-1242--0-1242-
MSED399549:0:Tyes-0417417--0-
MSME246196:0:Tyes36178012218861781999
MSP164756:1:Tno4065--406740660--
MSP164757:0:Tno4429--443144300--
MSP189918:2:Tyes4135--413741360--
MSP266779:3:Tyes0-3210-0
MSP400668:0:Tyes0----0-0
MSP409:2:Tyes-4322--0-4322-
MSTA339860:0:Tyes----0---
MSUC221988:0:Tyes0220217218219-220-
MTHE187420:0:Tyes---01709---
MTHE264732:0:Tyes10322101
MVAN350058:0:Tyes--1741174017390--
NEUR228410:0:Tyes----0---
NEUT335283:2:Tyes----0---
NFAR247156:2:Tyes0-------
NGON242231:0:Tyes406489120406489406
NHAM323097:2:Tyes----0---
NMEN122586:0:Tno11250860861859112501125
NMEN122587:0:Tyes11830860861859118301183
NMEN272831:0:Tno99807787797779980998
NMEN374833:0:Tno11240852853851112401124
NMUL323848:3:Tyes----0---
NOCE323261:1:Tyes-613--0-613-
NPHA348780:2:Tyes--10----
NSP103690:6:Tyes----0---
NSP35761:1:Tyes2068------0
NSP387092:0:Tyes----0---
NWIN323098:0:Tyes----0---
OANT439375:4:Tyes0---50-0
OANT439375:5:Tyes-0----0-
OCAR504832:0:Tyes-0--5-0-
OIHE221109:0:Tyes10432101
PACN267747:0:Tyes-0321-0-
PAER178306:0:Tyes--00----
PAER208963:0:Tyes6021--599010
PAER208964:0:Tno5911--588010
PARC259536:0:Tyes-1--0-1-
PARS340102:0:Tyes---0----
PATL342610:0:Tyes15360---153601536
PCAR338963:0:Tyes----0---
PCRY335284:1:Tyes-0------
PDIS435591:0:Tyes---10---
PENT384676:0:Tyes10--2279101
PFLU205922:0:Tyes43012434
PFLU216595:1:Tyes01---010
PFLU220664:0:Tyes14233012434
PGIN242619:0:Tyes-138-10-138-
PHAL326442:1:Tyes058458158258305840
PING357804:0:Tyes1394301245139431394
PINT246198:1:Tyes-0-12251226-0-
PISL384616:0:Tyes-0-1--0-
PLUM243265:0:Fyes0----0-0
PMEN399739:0:Tyes33471--0347034713470
PMUL272843:1:Tyes-0321-0-
PNAP365044:8:Tyes-3370--019693370-
PPRO298386:2:Tyes1777094494394217778071777
PPUT160488:0:Tno0986--3985986985
PPUT351746:0:Tyes32609--0260826092608
PPUT76869:0:Tno32592--0259125922591
PRUM264731:0:Tyes-1381-01-1381-
PSP117:0:Tyes-0-37823783-0-
PSP296591:2:Tyes14----0-913
PSP56811:2:Tyes-0----0-
PSTU379731:0:Tyes02889289228912890288828892888
PSYR205918:0:Tyes----0---
PTHE370438:0:Tyes40655304
PTOR263820:0:Tyes--00----
RCAS383372:0:Tyes-763103010-763-
RDEN375451:4:Tyes1172-0121172-1172
RETL347834:4:Tyes-----0-165
RETL347834:5:Tyes1242---0---
REUT264198:2:Tyes01721---172517211725
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