CANDIDATE ID: 207

CANDIDATE ID: 207

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9931111e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    7.5000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7440 (ygcW) (b2774)
   Products of gene:
     - G7440-MONOMER (predicted deoxygluconate dehydrogenase)

- EG50003 (acpP) (b1094)
   Products of gene:
     - EG50003-MONOMER (apo-[acyl carrier protein])
       Regulatees:
     - ACP-MONOMER (holo-[acyl-carrier protein])
       Regulatees:
     - MYRISTOYL-ACP (myristoyl-ACP)
       Regulatees:
     - B-HYDROXYBUTYRYL-S-ACP (β-3-hydroxybutyryl-S-ACP)
       Regulatees:
     - LAUROYL-ACP (lauroyl-ACP)
       Regulatees:
     - TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
     - STEAROYL-ACYL-CARRIER-PROTEIN (stearoyl-ACP)
       Regulatees:
     - R-3-HYDROXYPALMITOYL-ACP (R-3-hydroxypalmitoyl-ACP)
     - BUTYRYL-ACP (butyryl-ACP)
       Regulatees:
     - OLEOYL-ACYL-CARRIER-PROTEIN (oleoyl-ACP)
       Regulatees:
     - ACETOACETYL-S-ACP (acetoacetyl-ACP)
       Regulatees:
     - MONOMER-4603 (3R-3-hydroxybutanoyl-ACP)
     - CROTONYL-ACP (crotonyl-[acp])
       Regulatees:
     - MONOMER-4565 (2-octenoyl-ACP)
     - CIS-DELTA5-DODECENOYL-ACP (cis-Δ5-dodecenoyl-ACP)
     - BUT-2-ENOYL-ACP (but-2-enoyl-ACP)
     - PALMITOLEOYL-ACP (palmitoleoyl-ACP)
       Regulatees:
     - BETA-KETO-CIS-DELTA5-DODECENOYL-ACP (β-keto-cis-Δ5-dodecenoyl-ACP)
     - TRANS-D2-DECENOYL-ACP (trans-Δ2-decenoyl-[acp])
       Regulatees:
     - BETA-HYDROXY-CIS-DELTA5-DODECENOYL-ACP (β-hydroxy-cis-Δ5-dodecenoyl-ACP)
     - LIPOYL-ACP (lipoyl-ACP)
       Regulatees:
     - 3R-3-HYDROXYOCTANOYL-ACP ((3R)-3-hydroxyoctanoyl-ACP)
     - CIS-3-4-DEHYDRODECANOYL-ACP (cis-3,4-dehydrodecanoyl-ACP)
     - 2-HEXADECENOYL-ACP (2-hexadecenoyl-ACP)
     - CIS-DELTA3-DECENOYL-ACP (cis-Δ3-decenoyl-ACP)
     - SUCC-ACP (succ-ACP)
     - BETA-HYDROXYDECANOYL-ACP (β-hydroxydecanoyl-ACP)
       Regulatees:
     - OCTANOYL-ACP (octanoyl-ACP)
       Regulatees:
     - ACETYL-ECACP (acetyl-ACP)
       Regulatees:

- EG12361 (kduD) (b2842)
   Products of gene:
     - KDUD-MONOMER (2-deoxy-D-gluconate 3-dehydrogenase)
       Reactions:
        NAD+ + 2-deoxygluconate  =  NADH + 3-dehydro-2-deoxy-D-gluconate + H+

- EG12133 (ucpA) (b2426)
   Products of gene:
     - EG12133-MONOMER (predicted oxidoreductase, sulfate metabolism protein)

- EG12019 (yohF) (b2137)
   Products of gene:
     - EG12019-MONOMER (predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain)
       Reactions:
        acetoin + NADP+  =  diacetyl + NADPH + H+

- EG11318 (fabG) (b1093)
   Products of gene:
     - 3-OXOACYL-ACP-REDUCT-MONOMER (3-oxo-acyl-[acyl-carrier-protein] reductase)
       Reactions:
        a 3-oxo-glutaryl-[acp] methyl ester + NADPH + H+  ->  a 3-hydroxyglutaryl-[acp] methyl ester + NADP+
         In pathways
         BIOTIN-BIOSYNTHESIS-PWY (biotin biosynthesis I)
         PWY-6519 (7-keto-8-aminopelargonate biosynthesis I)
        a 3-oxo-pimeloyl-[acp] methyl ester + NADPH + H+  ->  a 3-hydroxypimeloyl-[acp] methyl ester + NADP+
         In pathways
         BIOTIN-BIOSYNTHESIS-PWY (biotin biosynthesis I)
         PWY-6519 (7-keto-8-aminopelargonate biosynthesis I)
        a 3-oxo-cis-delta9-hexadecenoyl-[acp] + NADPH + H+  ->  a 3-hydroxy cis delta9-hexadecenoyl-[acp] + NADP+
         In pathways
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY-6285 (PWY-6285)
         PWY-6282 (palmitoleate biosynthesis I)
        a 3-oxo-cis-delta7-tetradecenoyl-[acp] + NADPH + H+  ->  a 3-hydroxy cis delta7-tetradecenoyl-[acp] + NADP+
         In pathways
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY-6285 (PWY-6285)
         PWY-6282 (palmitoleate biosynthesis I)
        a 3-oxo-cis-delta5-dodecenoyl-[acp] + NADPH + H+  ->  a 3-hydroxy cis delta5-dodecenoyl-[acp] + NADP+
         In pathways
         PWY-6285 (PWY-6285)
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         PWY0-862 (cis-dodecenoyl biosynthesis)
        a (3R)-3-hydroxyacyl-[acp] + NADP+  =  a beta-ketoacyl-[acp] + NADPH + H+
         In pathways
         PWY-5989 (PWY-5989)
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY-5973 (cis-vaccenate biosynthesis)
         PWY-6285 (PWY-6285)
         PWY-6113 (PWY-6113)
         PWY-5156 (PWY-5156)
         PWY-5994 (PWY-5994)
         PWY-5971 (palmitate biosynthesis II (bacteria and plants))
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         FASYN-ELONG-PWY (fatty acid elongation -- saturated)

- EG11317 (fabD) (b1092)
   Products of gene:
     - MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
       Reactions:
        a holo-[acp] + malonyl-CoA  =  a malonyl-[acp] + coenzyme A
         In pathways
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         FASYN-INITIAL-PWY (superpathway of fatty acid biosynthesis initiation (E. coli))
         PWY-5156 (PWY-5156)
         PWY-6113 (PWY-6113)
         PWY-6285 (PWY-6285)
         PWY-4381 (fatty acid biosynthesis initiation I)

- EG10971 (srlD) (b2705)
   Products of gene:
     - SORB6PDEHYDROG-MONOMER (SrlD)
     - SORB6PDEHYDROG-CPLX (sorbitol-6-phosphate dehydrogenase)
       Reactions:
        D-sorbitol-6-phosphate + NAD+  =  D-fructose-6-phosphate + NADH + H+
         In pathways
         HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)
         SORBDEG-PWY (sorbitol degradation II)
         P302-PWY (P302-PWY)



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 145
Effective number of orgs (counting one per cluster within 468 clusters): 97

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
XAUT78245 ncbi Xanthobacter autotrophicus Py27
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB48
TSP28240 Thermotoga sp.7
TSP1755 Thermoanaerobacter sp.8
TROS309801 ncbi Thermomicrobium roseum DSM 51597
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332238
TPET390874 ncbi Thermotoga petrophila RKU-17
TMAR243274 ncbi Thermotoga maritima MSB87
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252597
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
STHE292459 ncbi Symbiobacterium thermophilum IAM 148638
SSP321327 ncbi Synechococcus sp. JA-3-3Ab7
SSON300269 ncbi Shigella sonnei Ss0467
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153058
SPRO399741 ncbi Serratia proteamaculans 5688
SMEL266834 ncbi Sinorhizobium meliloti 10217
SMED366394 ncbi Sinorhizobium medicae WSM4198
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14357
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SELO269084 ncbi Synechococcus elongatus PCC 63017
SDYS300267 ncbi Shigella dysenteriae Sd1978
SBOY300268 ncbi Shigella boydii Sb2278
RSP357808 ncbi Roseiflexus sp. RS-18
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RPOM246200 ncbi Ruegeria pomeroyi DSS-37
RMET266264 ncbi Ralstonia metallidurans CH347
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38418
REUT264198 ncbi Ralstonia eutropha JMP1348
RETL347834 ncbi Rhizobium etli CFN 427
RDEN375451 ncbi Roseobacter denitrificans OCh 1147
RCAS383372 ncbi Roseiflexus castenholzii DSM 139418
PSP296591 ncbi Polaromonas sp. JS6667
PPRO298386 ncbi Photobacterium profundum SS97
PLUT319225 ncbi Chlorobium luteolum DSM 2737
PCAR338963 ncbi Pelobacter carbinolicus DSM 23807
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
OIHE221109 ncbi Oceanobacillus iheyensis HTE8318
OANT439375 ncbi Ochrobactrum anthropi ATCC 491888
MTHE264732 ncbi Moorella thermoacetica ATCC 390737
MSP409 Methylobacterium sp.7
MSP400668 ncbi Marinomonas sp. MWYL17
MLOT266835 ncbi Mesorhizobium loti MAFF3030998
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53347
LSPH444177 ncbi Lysinibacillus sphaericus C3-417
LMON265669 ncbi Listeria monocytogenes 4b F23658
LMON169963 ncbi Listeria monocytogenes EGD-e8
LINN272626 ncbi Listeria innocua Clip112628
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
HSOM228400 ncbi Haemophilus somnus 23367
GURA351605 ncbi Geobacter uraniireducens Rf47
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-28
GSUL243231 ncbi Geobacter sulfurreducens PCA8
GMET269799 ncbi Geobacter metallireducens GS-158
GKAU235909 ncbi Geobacillus kaustophilus HTA4268
ESP42895 Enterobacter sp.8
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DSP255470 ncbi Dehalococcoides sp. CBDB17
DSP216389 ncbi Dehalococcoides sp. BAV17
DHAF138119 ncbi Desulfitobacterium hafniense Y518
DETH243164 ncbi Dehalococcoides ethenogenes 1957
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSAL290398 ncbi Chromohalobacter salexigens DSM 30438
CPER289380 ncbi Clostridium perfringens SM1018
CPER195103 ncbi Clostridium perfringens ATCC 131248
CPER195102 ncbi Clostridium perfringens 137
CJAP155077 Cellvibrio japonicus7
CDIF272563 ncbi Clostridium difficile 6307
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C7
CCHL340177 ncbi Chlorobium chlorochromatii CaD38
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto7
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6577
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80527
CAULO ncbi Caulobacter crescentus CB157
CACE272562 ncbi Clostridium acetobutylicum ATCC 8248
BWEI315730 ncbi Bacillus weihenstephanensis KBAB48
BTHU412694 ncbi Bacillus thuringiensis Al Hakam8
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-278
BSUB ncbi Bacillus subtilis subtilis 1688
BSP376 Bradyrhizobium sp.7
BSP36773 Burkholderia sp.7
BPUM315750 ncbi Bacillus pumilus SAFR-0328
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128227
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BLIC279010 ncbi Bacillus licheniformis ATCC 145808
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1108
BHAL272558 ncbi Bacillus halodurans C-1258
BCLA66692 ncbi Bacillus clausii KSM-K168
BCER572264 ncbi Bacillus cereus 03BB1028
BCER405917 Bacillus cereus W8
BCER315749 ncbi Bacillus cytotoxicus NVH 391-987
BCER288681 ncbi Bacillus cereus E33L8
BCER226900 ncbi Bacillus cereus ATCC 145798
BCEN331272 ncbi Burkholderia cenocepacia HI24248
BCEN331271 ncbi Burkholderia cenocepacia AU 10548
BBRO257310 ncbi Bordetella bronchiseptica RB507
BANT592021 ncbi Bacillus anthracis A02488
BANT568206 ncbi Bacillus anthracis CDC 6848
BANT261594 ncbi Bacillus anthracis Ames Ancestor8
BANT260799 ncbi Bacillus anthracis Sterne8
BAMY326423 ncbi Bacillus amyloliquefaciens FZB428
BAMB398577 ncbi Burkholderia ambifaria MC40-67
AORE350688 ncbi Alkaliphilus oremlandii OhILAs7
AMET293826 ncbi Alkaliphilus metalliredigens QYMF7
AMAR329726 ncbi Acaryochloris marina MBIC110177
ACRY349163 ncbi Acidiphilium cryptum JF-57
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3457


Names of the homologs of the genes in the group in each of these orgs
  G7440   EG50003   EG12361   EG12133   EG12019   EG11318   EG11317   EG10971   
YPSE349747 YPSIP31758_0935YPSIP31758_1579YPSIP31758_1693YPSIP31758_2412YPSIP31758_1693YPSIP31758_1578YPSIP31758_1577
YPSE273123 YPTB3083YPTB2470YPTB2357YPTB1575YPTB2357YPTB2471YPTB2472
YPES386656 YPDSF_0675YPDSF_1847YPDSF_1724YPDSF_1410YPDSF_1724YPDSF_1848YPDSF_1849
YPES377628 YPN_3041YPN_2029YPN_1906YPN_2414YPN_1906YPN_2030YPN_2031
YPES360102 YPA_0431YPA_1925YPA_1794YPA_0861YPA_1794YPA_1926YPA_1927
YPES349746 YPANGOLA_A3369YPANGOLA_A3498YPANGOLA_A2643YPANGOLA_A1699YPANGOLA_A2643YPANGOLA_A3499YPANGOLA_A3500
YPES214092 YPO0839YPO1600YPO1724YPO1565YPO1724YPO1599YPO1598
YPES187410 Y3224Y1759Y1886Y2600Y1886Y1758Y1757
XAUT78245 XAUT_2437XAUT_3132XAUT_2437XAUT_1996XAUT_2759XAUT_3115XAUT_3116
VVUL216895 VV2_0914VV1_3008VV2_0914VV1_3009VV2_0914VV1_3009VV1_3010
VVUL196600 VVA1401VV1276VV0552VV1275VVA1401VV1275VV1274
VPAR223926 VPA0077VP2053VPA0077VP0882VP2054VP2055VPA0125
TTEN273068 TTE1472TTE1471TTE1472TTE1472TTE1472TTE1472TTE1473TTE1472
TSP28240 TRQ2_0634TRQ2_0267TRQ2_1110TRQ2_1110TRQ2_1110TRQ2_1110TRQ2_0634
TSP1755 TETH514_1723TETH514_1722TETH514_1723TETH514_1723TETH514_1723TETH514_1723TETH514_1724TETH514_1723
TROS309801 TRD_1618TRD_A0012TRD_0248TRD_0910TRD_1621TRD_1622TRD_1621
TPSE340099 TETH39_1287TETH39_1286TETH39_1287TETH39_1287TETH39_1287TETH39_1287TETH39_1288TETH39_1287
TPET390874 TPET_0615TPET_0269TPET_1020TPET_1020TPET_1020TPET_1020TPET_0615
TMAR243274 TM_0297TM_0662TM_1724TM_1724TM_1724TM_1724TM_0297
TDEN292415 TBD_1549TBD_1548TBD_1549TBD_0924TBD_1549TBD_1550TBD_0734
STYP99287 STM3017STM1196STM3017STM2445STM2171STM1195STM1194STM2835
STHE292459 STH2303STH1452STH2303STH2303STH1451STH1451STH1450STH1451
SSP321327 CYA_2874CYA_2483CYA_2483CYA_2483CYA_2483CYA_2365CYA_2483
SSON300269 SSO_3002SSO_1114SSO_3002SSO_2515SSO_2194SSO_1113SSO_1112
SSAP342451 SSP0414SSP1537SSP0414SSP0436SSP1538SSP1538SSP1539SSP1538
SPRO399741 SPRO_2462SPRO_1907SPRO_2462SPRO_0638SPRO_3909SPRO_1906SPRO_1905SPRO_3572
SMEL266834 SMB21348SMC00573SMB21348SMB21111SMC00572SMC00571SMC01635
SMED366394 SMED_6315SMED_0746SMED_4743SMED_4971SMED_6315SMED_0745SMED_0744SMED_3132
SHIGELLA KDUDACPPKDUDUCPAFABGFABDSRLD
SHAE279808 SH1682SH0210SH0590SH1683SH1683SH1684SH1683
SFLE373384 SFV_2920SFV_1114SFV_2920SFV_2479SFV_1113SFV_1112SFV_2800
SFLE198214 AAN44338.1AAN42717.1AAN44338.1AAN43985.1AAN42716.1AAN42715.1AAN44219.1
SENT454169 SEHA_C3233SEHA_C1310SEHA_C3233SEHA_C2705SEHA_C2405SEHA_C1309SEHA_C1308SEHA_C3021
SENT321314 SCH_2956SCH_1144SCH_2956SCH_2444SCH_2187SCH_1143SCH_1142SCH_2768
SENT295319 SPA2884SPA1655SPA2884SPA0421SPA0680SPA1656SPA1657SPA2693
SENT220341 STY3162STY1235STY3162STY2682STY2401STY1234STY1233STY2956
SENT209261 T2927T1724T2927T0413T0684T1725T1726T2736
SELO269084 SYC0845_CSYC0985_CSYC0845_CSYC0030_DSYC0845_CSYC0101_CSYC0845_C
SDYS300267 SDY_2976SDY_2056SDY_2976SDY_2622SDY_2151SDY_2057SDY_2058SDY_2902
SBOY300268 SBO_2734SBO_1969SBO_2734SBO_2451SBO_1007SBO_1970SBO_1971SBO_2813
RSP357808 ROSERS_0498ROSERS_0984ROSERS_0498ROSERS_4552ROSERS_1362ROSERS_0987ROSERS_3469ROSERS_0987
RSOL267608 RSP0947RSC1053RSP0947RSC2753RSP1059RSC1052RSC1051
RPOM246200 SPO_2417SPO_2274SPO_2417SPO_2275SPO_2275SPO_2276SPO_1437
RMET266264 RMET_5878RMET_2427RMET_4614RMET_3057RMET_2428RMET_2429RMET_2201
RLEG216596 PRL110529RL1559PRL110529PRL110599RL1193RL1558RL1557RL2725
REUT264198 REUT_C6036REUT_A2262REUT_C6036REUT_C6404REUT_B5464REUT_A2263REUT_A2264REUT_C6036
RETL347834 RHE_PE00399RHE_CH01444RHE_PE00399RHE_PE00431RHE_CH01443RHE_CH01442RHE_CH02403
RDEN375451 RD1_3038RD1_1109RD1_0685RD1_3328RD1_3039RD1_3040RD1_3083
RCAS383372 RCAS_1253RCAS_3256RCAS_1253RCAS_0104RCAS_3569RCAS_3253RCAS_1491RCAS_3253
PSP296591 BPRO_3524BPRO_3646BPRO_3524BPRO_2146BPRO_0239BPRO_3647BPRO_3648
PPRO298386 PBPRB0149PBPRA1196PBPRB1737PBPRA1195PBPRB1737PBPRA1195PBPRA1194
PLUT319225 PLUT_0131PLUT_0130PLUT_0131PLUT_0131PLUT_0131PLUT_0132PLUT_0131
PCAR338963 PCAR_1438PCAR_1439PCAR_1438PCAR_2667PCAR_1438PCAR_1437PCAR_1438
PATL342610 PATL_2552PATL_2121PATL_2552PATL_2140PATL_2140PATL_2122PATL_2123
OIHE221109 OB2814OB1525OB2814OB0671OB1524OB1524OB1523OB0671
OANT439375 OANT_3576OANT_0572OANT_3576OANT_0317OANT_3576OANT_0571OANT_0570OANT_4068
MTHE264732 MOTH_0948MOTH_0949MOTH_0948MOTH_0948MOTH_0948MOTH_0947MOTH_1258
MSP409 M446_1709M446_3198M446_1709M446_3199M446_1734M446_3199M446_3200
MSP400668 MMWYL1_0778MMWYL1_2133MMWYL1_0778MMWYL1_4175MMWYL1_2434MMWYL1_2132MMWYL1_2131
MLOT266835 MLL4054MSR7851MLL4054MLL8564MLR2400MLR7850MLR7849MLR2400
LWEL386043 LWE1826LWE1825LWE1826LWE1826LWE1826LWE1826LWE1827
LSPH444177 BSPH_3231BSPH_1520BSPH_1519BSPH_1519BSPH_1519BSPH_1517BSPH_1519
LMON265669 LMOF2365_1835LMOF2365_1834LMOF2365_1835LMOF2365_1835LMOF2365_1835LMOF2365_1835LMOF2365_1836LMOF2365_1835
LMON169963 LMO1807LMO1806LMO1807LMO1807LMO1807LMO1807LMO1808LMO1807
LINN272626 LIN1921LIN1920LIN1921LIN1921LIN1921LIN1921LIN1922LIN1921
KPNE272620 GKPORF_B2608GKPORF_B0005GKPORF_B2608GKPORF_B0004GKPORF_B0255GKPORF_B0004GKPORF_B0003GKPORF_B2368
HSOM228400 HSM_0702HSM_0035HSM_0702HSM_0034HSM_0034HSM_0033HSM_1085
GURA351605 GURA_1877GURA_1878GURA_1877GURA_1877GURA_1877GURA_1876GURA_1877
GTHE420246 GTNG_0891GTNG_1044GTNG_1043GTNG_1043GTNG_1043GTNG_1043GTNG_1042GTNG_1504
GSUL243231 GSU_1603GSU_1604GSU_1603GSU_1603GSU_1603GSU_1603GSU_1602GSU_1603
GMET269799 GMET_1601GMET_1602GMET_2194GMET_2194GMET_2194GMET_1601GMET_1600GMET_1531
GKAU235909 GK1029GK1191GK1190GK1190GK1190GK1190GK1189GK1655
ESP42895 ENT638_3295ENT638_1609ENT638_3295ENT638_1608ENT638_2737ENT638_1608ENT638_1607ENT638_2028
ECOO157 YGCWACPPKDUDUCPAYOHFFABGFABDSRLD
ECOL83334 ECS3630ECS1472ECS3699ECS3297ECS3024ECS1471ECS1470ECS3561
ECOL585397 ECED1_3222ECED1_1237ECED1_3299ECED1_2869ECED1_2583ECED1_1236ECED1_1235ECED1_3154
ECOL585057 ECIAI39_2955ECIAI39_2067ECIAI39_3262ECIAI39_2571ECIAI39_0859ECIAI39_2068ECIAI39_2069ECIAI39_2891
ECOL585056 ECUMN_3101ECUMN_1269ECUMN_3170ECUMN_2747ECUMN_2471ECUMN_1268ECUMN_1267ECUMN_3026
ECOL585055 EC55989_3047EC55989_1206EC55989_3119EC55989_2715EC55989_2388EC55989_1205EC55989_1204EC55989_2967
ECOL585035 ECS88_3038ECS88_1108ECS88_3139ECS88_2615ECS88_2283ECS88_1107ECS88_1106ECS88_2968
ECOL585034 ECIAI1_2878ECIAI1_1129ECIAI1_2952ECIAI1_2483ECIAI1_2215ECIAI1_1128ECIAI1_1127ECIAI1_2797
ECOL481805 ECOLC_0939ECOLC_2507ECOLC_0873ECOLC_1253ECOLC_1510ECOLC_2508ECOLC_2509ECOLC_1007
ECOL469008 ECBD_0956ECBD_2507ECBD_0956ECBD_1255ECBD_1521ECBD_2508ECBD_2509ECBD_1020
ECOL439855 ECSMS35_2902ECSMS35_2033ECSMS35_2990ECSMS35_2581ECSMS35_0906ECSMS35_2034ECSMS35_2035ECSMS35_2828
ECOL413997 ECB_02618ECB_01090ECB_02690ECB_02326ECB_02067ECB_01089ECB_01088ECB_02555
ECOL409438 ECSE_3029ECSE_1158ECSE_3099ECSE_2716ECSE_2405ECSE_1157ECSE_1156ECSE_2953
ECOL405955 APECO1_3759APECO1_3664APECO1_4120APECO1_4412APECO1_174APECO1_173APECO1_3821
ECOL364106 UTI89_C3137UTI89_C1220UTI89_C3245UTI89_C2759UTI89_C2411UTI89_C1218UTI89_C1217UTI89_C3067
ECOL362663 ECP_2747ECP_1086ECP_2855ECP_2449ECP_2176ECP_1085ECP_1084ECP_2665
ECOL331111 ECE24377A_3075ECE24377A_1215ECE24377A_3164ECE24377A_2712ECE24377A_2427ECE24377A_1214ECE24377A_1213ECE24377A_2989
ECOL316407 ECK2768:JW5443:B2774ECK1080:JW1080:B1094ECK2840:JW2810:B2842ECK2421:JW5394:B2426ECK2130:JW2125:B2137ECK1079:JW1079:B1093ECK1078:JW1078:B1092ECK2700:JW2674:B2705
ECOL199310 C3332C1364C3439C2960C2669C1361C3259
ECAR218491 ECA2401ECA1798ECA2401ECA2401ECA1797ECA1796ECA0310
DSP255470 CBDBA1205CBDBA1208CBDBA689CBDBA1205CBDBA689CBDBA1205CBDBA1204
DSP216389 DEHABAV1_1088DEHABAV1_1090DEHABAV1_0666DEHABAV1_1088DEHABAV1_0666DEHABAV1_1088DEHABAV1_1087
DHAF138119 DSY2660DSY2659DSY4726DSY4726DSY2660DSY2660DSY2661DSY1017
DETH243164 DET_1277DET_1279DET_0736DET_1277DET_0736DET_1277DET_1276
CVIO243365 CV_3414CV_3413CV_3414CV_3576CV_3414CV_3415CV_3576
CSAL290398 CSAL_1129CSAL_1602CSAL_1129CSAL_1022CSAL_2613CSAL_1601CSAL_1600CSAL_0638
CPER289380 CPR_0392CPR_1691CPR_0392CPR_1138CPR_1138CPR_1138CPR_1137CPR_1138
CPER195103 CPF_0396CPF_1973CPF_0396CPF_1326CPF_1326CPF_1326CPF_1325CPF_1326
CPER195102 CPE1070CPE1719CPE1070CPE1070CPE1070CPE1069CPE1070
CJAP155077 CJA_0168CJA_1677CJA_0168CJA_1138CJA_2303CJA_1676CJA_1675
CDIF272563 CD2577CD1182CD1182CD1182CD1182CD1181CD0768
CDES477974 DAUD_0642DAUD_0643DAUD_0642DAUD_0642DAUD_0642DAUD_0642DAUD_0641
CCHL340177 CAG_1662CAG_1661CAG_1662CAG_1662CAG_1662CAG_1662CAG_1663CAG_1662
CBOT536232 CLM_0594CLM_2749CLM_4092CLM_0594CLM_4092CLM_4093CLM_3879
CBOT515621 CLJ_B3929CLJ_B2680CLJ_B3929CLJ_B3929CLJ_B3929CLJ_B3930CLJ_B3720
CBEI290402 CBEI_0448CBEI_0460CBEI_1071CBEI_2398CBEI_1071CBEI_0257CBEI_1071
CAULO CC1492CC1677CC1492CC1675CC1675CC1674CC3384
CACE272562 CAC0361CAC1747CAC0361CAC3574CAC2626CAC3574CAC3575CAC3574
BWEI315730 BCERKBAB4_3674BCERKBAB4_3673BCERKBAB4_3674BCERKBAB4_3674BCERKBAB4_3674BCERKBAB4_3674BCERKBAB4_3675BCERKBAB4_3674
BTHU412694 BALH_3482BALH_3481BALH_3482BALH_3482BALH_3482BALH_3482BALH_3483BALH_3648
BTHU281309 BT9727_3592BT9727_3591BT9727_3592BT9727_3592BT9727_3592BT9727_3592BT9727_3593BT9727_3592
BSUB BSU22140BSU15920BSU22140BSU15910BSU15910BSU15910BSU15900BSU31220
BSP376 BRADO3552BRADO3313BRADO3552BRADO3311BRADO1396BRADO3311BRADO3310
BSP36773 BCEP18194_A3725BCEP18194_A4236BCEP18194_A3725BCEP18194_B3095BCEP18194_B1406BCEP18194_A4235BCEP18194_A4234
BPUM315750 BPUM_3247BPUM_1491BPUM_3247BPUM_1490BPUM_1490BPUM_1490BPUM_1489BPUM_1490
BPER257313 BP0464BP2440BP2854BP1150BP2441BP2442BP1785
BPAR257311 BPP4378BPP3304BPP0576BPP0576BPP3305BPP3306BPP2100
BMAL320389 BMA10247_1799BMA10247_A2073BMA10247_A1785BMA10247_0386BMA10247_1800BMA10247_1801BMA10247_A1828
BMAL243160 BMA_0533BMA_A1811BMA_A0642BMA_1859BMA_0532BMA_0531BMA_A0606
BLIC279010 BL02435BL02316BL02435BL02315BL02315BL02315BL02314BL02488
BJAP224911 BLR5277BSR4084BLL4353BLL4596BLL7185BLR4083BLR4082BLL0026
BHAL272558 BH2167BH2490BH2167BH2491BH2491BH2491BH2492BH1550
BCLA66692 ABC1041ABC2300ABC0993ABC2301ABC2301ABC2301ABC2302ABC1160
BCER572264 BCA_3951BCA_3950BCA_3951BCA_3951BCA_3951BCA_3951BCA_3952BCA_4141
BCER405917 BCE_3893BCE_3892BCE_3893BCE_1817BCE_3893BCE_3893BCE_3894BCE_4084
BCER315749 BCER98_2502BCER98_2503BCER98_1400BCER98_2503BCER98_2503BCER98_2504BCER98_2729
BCER288681 BCE33L3610BCE33L3609BCE33L3610BCE33L3610BCE33L3610BCE33L3610BCE33L3611BCE33L3610
BCER226900 BC_3849BC_3848BC_3849BC_3849BC_3849BC_3849BC_3850BC_3849
BCEN331272 BCEN2424_0641BCEN2424_1124BCEN2424_0641BCEN2424_0620BCEN2424_2275BCEN2424_1123BCEN2424_1122BCEN2424_2212
BCEN331271 BCEN_0158BCEN_0644BCEN_0158BCEN_0137BCEN_1663BCEN_0643BCEN_0642BCEN_5865
BBRO257310 BB4964BB3755BB0582BB0582BB3756BB3757BB4764
BANT592021 BAA_4013BAA_4012BAA_4013BAA_4013BAA_4013BAA_4013BAA_4014BAA_4270
BANT568206 BAMEG_0642BAMEG_0643BAMEG_0642BAMEG_0642BAMEG_0642BAMEG_0642BAMEG_0641BAMEG_4288
BANT261594 GBAA3989GBAA3988GBAA3989GBAA3989GBAA3989GBAA3989GBAA3990GBAA4249
BANT260799 BAS3702BAS3701BAS3702BAS3702BAS3702BAS3702BAS3703BAS3702
BAMY326423 RBAM_015740RBAM_015750RBAM_015740RBAM_015740RBAM_015740RBAM_015740RBAM_015730RBAM_037840
BAMB398577 BAMMC406_1004BAMMC406_4661BAMMC406_0545BAMMC406_5255BAMMC406_1003BAMMC406_1002BAMMC406_5255
AORE350688 CLOS_1455CLOS_0849CLOS_1455CLOS_1455CLOS_1455CLOS_1454CLOS_1455
AMET293826 AMET_0901AMET_0901AMET_2755AMET_2755AMET_2755AMET_2756AMET_2755
AMAR329726 AM1_5632AM1_5523AM1_5632AM1_B0303AM1_5632AM1_5632AM1_5632
ACRY349163 ACRY_1591ACRY_1527ACRY_1591ACRY_0086ACRY_3136ACRY_1526ACRY_1525
ABAC204669 ACID345_4309ACID345_4505ACID345_4309ACID345_0643ACID345_3509ACID345_0265ACID345_4573


Organism features enriched in list (features available for 136 out of the 145 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000069542112
Disease:Anthrax 0.002861844
Disease:Bubonic_plague 0.000147966
Disease:Dysentery 0.000147966
Disease:Gastroenteritis 0.0004355913
Endospores:No 4.376e-628211
Endospores:Yes 9.563e-103253
GC_Content_Range4:0-40 0.000100832213
GC_Content_Range4:40-60 0.000034872224
GC_Content_Range7:30-40 0.000867225166
GC_Content_Range7:50-60 7.029e-643107
Genome_Size_Range5:0-2 6.678e-155155
Genome_Size_Range5:2-4 0.001146832197
Genome_Size_Range5:4-6 1.084e-1886184
Genome_Size_Range9:1-2 3.363e-115128
Genome_Size_Range9:2-3 0.001114116120
Genome_Size_Range9:4-5 1.880e-64196
Genome_Size_Range9:5-6 3.354e-104588
Habitat:Host-associated 0.000147431206
Habitat:Multiple 0.000846456178
Motility:No 3.472e-616151
Motility:Yes 3.765e-685267
Oxygen_Req:Aerobic 0.002988731185
Oxygen_Req:Facultative 8.591e-668201
Pathogenic_in:Human 0.003678362213
Shape:Coccus 2.187e-7382
Shape:Rod 2.243e-18122347
Temp._range:Mesophilic 0.0048307120473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 131
Effective number of orgs (counting one per cluster within 468 clusters): 117

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354050
STOK273063 ncbi Sulfolobus tokodaii 71
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSOL273057 ncbi Sulfolobus solfataricus P21
SMAR399550 ncbi Staphylothermus marinus F10
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RMAS416276 ncbi Rickettsia massiliae MTU51
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCAN293613 ncbi Rickettsia canadensis McKiel1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LACI272621 ncbi Lactobacillus acidophilus NCFM1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
FSP106370 ncbi Frankia sp. CcI30
FMAG334413 ncbi Finegoldia magna ATCC 293280
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
ACEL351607 ncbi Acidothermus cellulolyticus 11B1


Names of the homologs of the genes in the group in each of these orgs
  G7440   EG50003   EG12361   EG12133   EG12019   EG11318   EG11317   EG10971   
WSUC273121 WS0630
WPIP955
WPIP80849 WB_0599
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TPAL243276
TKOD69014
TDEN326298 TMDEN_1610
TDEN243275
STOK273063 ST1109
SSP387093 SUN_2166
SSOL273057 SSO3114
SMAR399550
SACI56780 SYN_02364
SACI330779
RTYP257363 RT0748
RSAL288705
RMAS416276 RMA_1152
RFEL315456 RF_1222
RCAN293613 A1E_04875
PTOR263820
PISL384616 PISL_1089
PHOR70601
PFUR186497
PAST100379
PARS340102 PARS_0834
PAER178306
PACN267747 PPA1815
PABY272844
OTSU357244
NSEN222891
NPHA348780
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632 MSC_0020
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_2033
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047 MCAP_0029
MBUR259564
MBAR269797 MBAR_A0777
MART243272
MAEO419665
MACE188937 MA0415
MABS561007 MAB_0952
LXYL281090
LREU557436 LREU_1449
LPLA220668
LJOH257314
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LACI272621 LBA1098
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMAR272569 PNG7030
HHEP235279 HH_0728
HBUT415426
HACI382638
FSP106370
FMAG334413
ERUM302409
ERUM254945 ERWE_CDS_03960
ECHA205920
ECAN269484 ECAJ_0374
CSUL444179 SMGWSS_016
CPNE182082 CPB0304
CPNE138677 CPJ0295
CPNE115713 CPN0295
CPNE115711 CP_0463
CMIC443906 CMM_2320
CMIC31964 CMS2499
CMET456442
CKOR374847 KCR_0822
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHOM360107
CFET360106
CDIP257309
CCUR360105
CCON360104
BTUR314724
BLON206672
BHER314723
BGAR290434
BBUR224326
BAPH372461 BCC_217
BAFZ390236
AYEL322098
AURANTIMONAS
APHA212042
APER272557
ANAE240017
ALAI441768 ACL_0463
ACEL351607 ACEL_1151


Organism features enriched in list (features available for 124 out of the 131 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000265611112
Arrangment:Singles 0.000378377286
Endospores:No 2.177e-1177211
Endospores:Yes 0.0000255153
GC_Content_Range4:0-40 3.470e-667213
GC_Content_Range4:60-100 0.000052115145
GC_Content_Range7:0-30 3.615e-72547
GC_Content_Range7:60-70 0.000014612134
Genome_Size_Range5:0-2 1.472e-2783155
Genome_Size_Range5:4-6 8.355e-166184
Genome_Size_Range9:0-1 2.083e-92027
Genome_Size_Range9:1-2 2.197e-1663128
Genome_Size_Range9:3-4 0.0095155977
Genome_Size_Range9:4-5 5.217e-8396
Genome_Size_Range9:5-6 3.843e-7388
Gram_Stain:Gram_Neg 0.000024051333
Gram_Stain:Gram_Pos 0.006298422150
Habitat:Host-associated 0.000542759206
Habitat:Multiple 0.000059721178
Habitat:Specialized 0.00452201953
Habitat:Terrestrial 0.0043185131
Optimal_temp.:100 0.009438833
Optimal_temp.:35-40 0.009438833
Optimal_temp.:37 0.009547731106
Optimal_temp.:42 0.009438833
Oxygen_Req:Anaerobic 0.000052037102
Oxygen_Req:Facultative 0.001962430201
Oxygen_Req:Microaerophilic 0.00018961118
Pathogenic_in:Animal 0.0035428666
Pathogenic_in:Ruminant 0.009438833
Salinity:Extreme_halophilic 0.005402257
Shape:Irregular_coccus 7.550e-81417
Shape:Rod 3.259e-1240347
Shape:Sphere 4.034e-91619
Shape:Spiral 1.608e-82234
Temp._range:Hyperthermophilic 3.608e-61523
Temp._range:Mesophilic 0.002835490473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 8
Effective number of orgs (counting one per cluster within 468 clusters): 7

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CCHL340177 ncbi Chlorobium chlorochromatii CaD3 0.00029287958
DETH243164 ncbi Dehalococcoides ethenogenes 195 0.00122095747
DSP216389 ncbi Dehalococcoides sp. BAV1 0.00139255857
DSP255470 ncbi Dehalococcoides sp. CBDB1 0.00149455917
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 15305 0.004179711078
CPER289380 ncbi Clostridium perfringens SM101 0.004964711318
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 33223 0.007931611998
CPER195103 ncbi Clostridium perfringens ATCC 13124 0.008705912138


Names of the homologs of the genes in the group in each of these orgs
  G7440   EG50003   EG12361   EG12133   EG12019   EG11318   EG11317   EG10971   
CCHL340177 CAG_1662CAG_1661CAG_1662CAG_1662CAG_1662CAG_1662CAG_1663CAG_1662
DETH243164 DET_1277DET_1279DET_0736DET_1277DET_0736DET_1277DET_1276
DSP216389 DEHABAV1_1088DEHABAV1_1090DEHABAV1_0666DEHABAV1_1088DEHABAV1_0666DEHABAV1_1088DEHABAV1_1087
DSP255470 CBDBA1205CBDBA1208CBDBA689CBDBA1205CBDBA689CBDBA1205CBDBA1204
SSAP342451 SSP0414SSP1537SSP0414SSP0436SSP1538SSP1538SSP1539SSP1538
CPER289380 CPR_0392CPR_1691CPR_0392CPR_1138CPR_1138CPR_1138CPR_1137CPR_1138
TPSE340099 TETH39_1287TETH39_1286TETH39_1287TETH39_1287TETH39_1287TETH39_1287TETH39_1288TETH39_1287
CPER195103 CPF_0396CPF_1973CPF_0396CPF_1326CPF_1326CPF_1326CPF_1325CPF_1326


Organism features enriched in list (features available for 8 out of the 8 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Gas_gangrene 0.000490023
Gram_Stain:Gram_Pos 0.00423946150
Oxygen_Req:Anaerobic 0.00002827102



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73570.4725
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121730.4305
PWY-6196 (serine racemization)102650.4235



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG50003   EG12361   EG12133   EG12019   EG11318   EG11317   EG10971   
G74400.999170.9998610.9990320.9993910.9995430.9991780.999054
EG500030.9990360.9993520.9992560.999990.9999710.998692
EG123610.9989020.9993430.9994070.9990390.998741
EG121330.9992650.9996360.9995670.99894
EG120190.9996170.999330.999336
EG113180.9999950.999359
EG113170.998708
EG10971



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PAIRWISE BLAST SCORES:

  G7440   EG50003   EG12361   EG12133   EG12019   EG11318   EG11317   EG10971   
G74400.0f0-9.2e-48-----
EG50003-0.0f0------
EG123616.2e-42-0.0f0-----
EG12133---0.0f0----
EG12019----0.0f0---
EG11318-----0.0f0--
EG11317------0.0f0-
EG10971-------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli)) (degree of match pw to cand: 0.231, degree of match cand to pw: 0.375, average score: 0.874)
  Genes in pathway or complex:
             0.9988 0.9973 EG10277 (fabH) FABH-MONOMER (FabH)
             0.8335 0.4973 EG10275 (accB) BCCP-BIOTIN (biotinylated biotin-carboxyl carrier protein)
             0.9109 0.6590 EG10276 (accC) BIOTIN-CARBOXYL-MONOMER (AccC)
             0.8386 0.5544 EG11647 (accA) CARBOXYL-TRANSFERASE-ALPHA-MONOMER (acetyl-CoA carboxyltransferase, α subunit)
             0.8586 0.5874 EG10217 (accD) CARBOXYL-TRANSFERASE-BETA-MONOMER (acetyl-CoA carboxyltransferase, β subunit)
   *in cand* 0.9995 0.9987 EG11317 (fabD) MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
             0.9990 0.9977 EG12606 (fabF) 3-OXOACYL-ACP-SYNTHII-MONOMER (FabF)
             0.9944 0.9812 EG10274 (fabB) FABB-MONOMER (FabB)
   *in cand* 0.9997 0.9994 EG11318 (fabG) 3-OXOACYL-ACP-REDUCT-MONOMER (3-oxo-acyl-[acyl-carrier-protein] reductase)
             0.6974 0.1410 EG11528 (fabI) ENOYL-ACP-REDUCT-NADH-MONOMER (enoyl-[acyl-carrier-protein] reductase)
             0.7316 0.1898 EG11284 (fabZ) FABZ-MONOMER (FabZ)
             0.7374 0.2088 EG10273 (fabA) FABA-MONOMER (FabA)
   *in cand* 0.9994 0.9987 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9991 0.9987 EG10971 (srlD) SORB6PDEHYDROG-MONOMER (SrlD)
   *in cand* 0.9994 0.9993 EG12019 (yohF) EG12019-MONOMER (predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain)
   *in cand* 0.9993 0.9989 EG12133 (ucpA) EG12133-MONOMER (predicted oxidoreductase, sulfate metabolism protein)
   *in cand* 0.9993 0.9987 EG12361 (kduD) KDUD-MONOMER (2-deoxy-D-gluconate 3-dehydrogenase)
   *in cand* 0.9994 0.9990 G7440 (ygcW) G7440-MONOMER (predicted deoxygluconate dehydrogenase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11317 EG11318 EG50003 (centered at EG11318)
G7440 (centered at G7440)
EG12361 (centered at EG12361)
EG12133 (centered at EG12133)
EG12019 (centered at EG12019)
EG10971 (centered at EG10971)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7440   EG50003   EG12361   EG12133   EG12019   EG11318   EG11317   EG10971   
260/623413/623252/623299/623276/623411/623407/623275/623
AAEO224324:0:Tyes-590--5895890589
AAUR290340:2:Tyes2267-2267-132--0
AAVE397945:0:Tyes175693-167309291-
ABAC204669:0:Tyes408042804080384326904349-
ABAU360910:0:Tyes-9119101010-9109090
ABOR393595:0:Tyes-2---10-
ABUT367737:0:Tyes-470----0-
ACAU438753:0:Tyes129622941296-022932292-
ACEL351607:0:Tyes-----0--
ACRY349163:7:Tyes----0---
ACRY349163:8:Tyes1503143915030-14381437-
ADEH290397:0:Tyes-615--6166166170
AEHR187272:0:Tyes-422-004234241479
AFER243159:0:Tyes-0---12-
AFUL224325:0:Tyes0-0-----
AHYD196024:0:Tyes-2-1-10-
ALAI441768:0:Tyes--0-----
AMAR234826:0:Tyes--351---0-
AMAR329726:7:Tyes---0----
AMAR329726:9:Tyes1100110-110110-110
AMET293826:0:Tyes0-018121812181218131812
AORE350688:0:Tyes606-0606606606605606
APLE416269:0:Tyes-0171171-171172-
APLE434271:0:Tno-0187187-187188-
ASAL382245:5:Tyes10-1-121462
ASP1667:3:Tyes659-659----0
ASP232721:2:Tyes-1194-0011951196-
ASP62928:0:Tyes12---10-
ASP62977:0:Tyes-2---101531
ASP76114:2:Tyes-2092-0-209120901995
AVAR240292:3:Tyes190417881904-01904-1904
BABO262698:1:Tno-2-11478101088
BAMB339670:2:Tno---0----
BAMB339670:3:Tno-2--1353101284
BAMB398577:2:Tno--0-591--591
BAMB398577:3:Tno-463-0-462461-
BAMY326423:0:Tyes12111102209
BANT260799:0:Tno10111121
BANT261594:2:Tno1011112254
BANT568206:2:Tyes12111103568
BANT592021:2:Tno1011112253
BAPH198804:0:Tyes-2---10-
BAPH372461:0:Tyes-----0--
BBAC264462:0:Tyes-0---12-
BBAC360095:0:Tyes-2---10-
BBRO257310:0:Tyes44253198-00319932004222
BCAN483179:1:Tno-2-11572101164
BCEN331271:0:Tno-------0
BCEN331271:2:Tno215162101549515514-
BCEN331272:3:Tyes2150321016535025011590
BCER226900:1:Tyes10111121
BCER288681:0:Tno10111121
BCER315749:1:Tyes-1017101801018101810191241
BCER405917:1:Tyes19491948194901949194919502135
BCER572264:1:Tno1011112186
BCIC186490:0:Tyes-0---12-
BCLA66692:0:Tyes48132401325132513251326165
BFRA272559:1:Tyes09503758--2177-
BFRA295405:0:Tno014804108--2207-
BHAL272558:0:Tyes6179406179419419419420
BHEN283166:0:Tyes-2---10-
BJAP224911:0:Fyes52884082435146007208408140800
BLIC279010:0:Tyes19512195111101981
BMAL243160:0:Tno--114931---0
BMAL243160:1:Tno-2--115810-
BMAL320388:0:Tno--0-----
BMAL320388:1:Tno-2023-068420242025-
BMAL320389:0:Tyes--2790---42
BMAL320389:1:Tyes-1380--013811382-
BMEL224914:1:Tno-1484-1486014861487-
BMEL359391:1:Tno-2-11427101056
BOVI236:1:Tyes-2-1133710988
BPAR257311:0:Tno36342583-00258425851453
BPER257313:0:Tyes017762155614-177717781188
BPET94624:0:Tyes-172603945-17251724-
BPSE272560:0:Tyes--0538----
BPSE272560:1:Tyes-1259--012601261-
BPSE320372:0:Tno--0664----
BPSE320372:1:Tno-1554--015551556-
BPSE320373:0:Tno--0688----
BPSE320373:1:Tno-1463--014641465-
BPUM315750:0:Tyes17582175811101
BQUI283165:0:Tyes-2---10-
BSP107806:2:Tyes-1---0--
BSP36773:1:Tyes---16890---
BSP36773:2:Tyes05210--520519-
BSP376:0:Tyes2042182220421820018201819-
BSUB:0:Tyes649264911101609
BSUI204722:1:Tyes-2-11528101135
BSUI470137:1:Tno-2-11355101166
BTHA271848:0:Tno0-01252----
BTHA271848:1:Tno-2---10-
BTHE226186:0:Tyes24992626-3042-30420-
BTHU281309:1:Tno10111121
BTHU412694:1:Tno1011112164
BTRI382640:1:Tyes-2---10-
BVIE269482:7:Tyes-447-017524464451689
BWEI315730:4:Tyes10111121
BXEN266265:1:Tyes---0---2634
CABO218497:0:Tyes-1---0--
CACE272562:1:Tyes01380032132246321332143213
CAULO:0:Tyes01860184-1841831915
CBEI290402:0:Tyes189-20180821108080808
CBLO203907:0:Tyes-0---12-
CBLO291272:0:Tno-0---12-
CBOT36826:1:Tno11360-1136-11361137951
CBOT441770:0:Tyes12820-1282-128212831100
CBOT441771:0:Tno11760-1176-11761177992
CBOT441772:1:Tno01892-3096-309630972909
CBOT498213:1:Tno01848-3088-308830892904
CBOT508765:1:Tyes0-0000--
CBOT515621:2:Tyes11750-1175117511751176990
CBOT536232:0:Tno02090-33440334433453155
CBUR227377:1:Tyes-2---10-
CBUR360115:1:Tno-2---10-
CBUR434922:2:Tno-0---12-
CCAV227941:1:Tyes-2---10-
CCHL340177:0:Tyes10111121
CDES477974:0:Tyes1211110-
CDIF272563:1:Tyes1849-4314314314314300
CEFF196164:0:Fyes---0---0
CFEL264202:1:Tyes-0---1--
CGLU196627:0:Tyes----2112--0
CHUT269798:0:Tyes0307-056901363-
CHYD246194:0:Tyes101-112-
CJAP155077:0:Tyes014650942207714641463-
CKLU431943:1:Tyes6571261-00-15980
CKOR374847:0:Tyes----0---
CMAQ397948:0:Tyes0-000---
CMIC31964:2:Tyes-------0
CMIC443906:2:Tyes-------0
CMUR243161:1:Tyes-0-1-1--
CNOV386415:0:Tyes11272-1110-
CPEL335992:0:Tyes1522152---0-
CPER195102:1:Tyes1651-11101
CPER195103:0:Tno015550920920920919920
CPER289380:3:Tyes012820737737737736737
CPHY357809:0:Tyes642-642--101
CPNE115711:1:Tyes-0------
CPNE115713:0:Tno-0------
CPNE138677:0:Tno-0------
CPNE182082:0:Tno-0------
CPRO264201:0:Fyes0----0--
CPSY167879:0:Tyes-2---10-
CRUT413404:0:Tyes-0---325326-
CSAL290398:0:Tyes49998649939120129859840
CSP501479:3:Fyes--0-----
CSP501479:8:Fyes-605-604-6046030
CSP78:2:Tyes2169782160-977976-
CSUL444179:0:Tyes-0------
CTEP194439:0:Tyes1211-10-
CTET212717:0:Tyes615---61510-
CTRA471472:0:Tyes-0---1--
CTRA471473:0:Tno-0---1--
CVES412965:0:Tyes-0---289290-
CVIO243365:0:Tyes101176-12176
DARO159087:0:Tyes-2---10-
DDES207559:0:Tyes-1--00-0
DETH243164:0:Tyes51751905170517516-
DGEO319795:0:Tyes-------0
DGEO319795:1:Tyes-21-110-
DHAF138119:0:Tyes16711670374737471671167116720
DNOD246195:0:Tyes-2---10-
DOLE96561:0:Tyes10586-11-1
DPSY177439:2:Tyes10--11--
DRAD243230:3:Tyes-0--113-
DRED349161:0:Tyes101-112-
DSHI398580:5:Tyes-0---12256
DSP216389:0:Tyes43944104390439438-
DSP255470:0:Tno45145304510451450-
DVUL882:1:Tyes-0-192211-1
ECAN269484:0:Tyes-----0--
ECAR218491:0:Tyes209914982099-2099149714960
ECOL199310:0:Tno19382204215701285-01868
ECOL316407:0:Tno16872175913561060101619
ECOL331111:6:Tno17852186914421171101702
ECOL362663:0:Tno16652177113611090101583
ECOL364106:1:Tno19163202415411193101846
ECOL405955:2:Tyes1759-185513821082101691
ECOL409438:6:Tyes19032197615811262101827
ECOL413997:0:Tno1530216041231966101467
ECOL439855:4:Tno19471103203216380110411051873
ECOL469008:0:Tno0153603075761537153864
ECOL481805:0:Tno711637039265316381639139
ECOL585034:0:Tno17192179613361071101645
ECOL585035:0:Tno18572195914521123101790
ECOL585055:0:Tno18222189514911169101745
ECOL585056:2:Tno18342190914791202101764
ECOL585057:0:Tno20871194241317000119511962025
ECOL585397:0:Tno19152199715661279101848
ECOL83334:0:Tno22092228318651583102140
ECOLI:0:Tno17312180513801084101662
ECOO157:0:Tno21542222818041522102083
EFAE226185:3:Tyes1720-0-1832-2301-
EFER585054:1:Tyes-1075-01462107610771766
ELIT314225:0:Tyes-0-1025-680681-
ERUM254945:0:Tyes-----0--
ESP42895:1:Tyes1702217021112810420
FALN326424:0:Tyes-5920046834437---
FJOH376686:0:Tyes314903149--1782603-
FNOD381764:0:Tyes-299-0----
FNUC190304:0:Tyes-1-345-3450-
FPHI484022:1:Tyes-0---12-
FRANT:0:Tno-2---10-
FSP1855:0:Tyes-34030--344-1388
FSUC59374:0:Tyes----3241703
FTUL351581:0:Tno-0---12-
FTUL393011:0:Tno-0---12-
FTUL393115:0:Tyes-2---10-
FTUL401614:0:Tyes-2---10-
FTUL418136:0:Tno-0---12-
FTUL458234:0:Tno-0---12-
GBET391165:0:Tyes-0-2-23-
GFOR411154:0:Tyes14913106-1491-14910-
GKAU235909:1:Tyes0162161161161161160630
GMET269799:1:Tyes697067067067069680
GOXY290633:5:Tyes131311671313--116611650
GSUL243231:0:Tyes12111101
GTHE420246:1:Tyes0151150150150150149605
GURA351605:0:Tyes121-1101
GVIO251221:0:Tyes-1213--0242510462425
HARS204773:0:Tyes-0---12-
HAUR316274:2:Tyes-733-303
HCHE349521:0:Tyes-2-451639710-
HDUC233412:0:Tyes-1063---10-
HHAL349124:0:Tyes10---12-
HHEP235279:0:Tyes-0------
HINF281310:0:Tyes-0---12-
HINF374930:0:Tyes-2---10-
HINF71421:0:Tno-0---12-
HMAR272569:7:Tyes---0----
HMOD498761:0:Tyes-2-11101
HNEP81032:0:Tyes-196-1750197199-
HSOM205914:1:Tyes-211-10515
HSOM228400:0:Tno68226821-101074
ILOI283942:0:Tyes-570---5715720
JSP290400:1:Tyes-858-0-857855-
JSP375286:0:Tyes-2--51410514
KPNE272620:2:Tyes2576225761252102338
KRAD266940:2:Fyes677-677-0---
LACI272621:0:Tyes----0---
LBIF355278:2:Tyes24322428243202432--2432
LBIF456481:2:Tno2510250625100---2510
LBOR355276:1:Tyes01-00--0
LBOR355277:1:Tno14681467-01468--1468
LBRE387344:2:Tyes0-0-0--1379
LCAS321967:1:Tyes541-541062---
LCHO395495:0:Tyes-0-1867-121625
LINN272626:1:Tno10111121
LINT189518:0:Tyes01--0--0
LINT189518:1:Tyes---0----
LINT267671:0:Tno01--0--0
LINT267671:1:Tno---0----
LINT363253:3:Tyes0---0--0
LLAC272622:5:Tyes---1--0143
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