CANDIDATE ID: 209

CANDIDATE ID: 209

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9911696e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7665 (lptA) (b3200)
   Products of gene:
     - YHBN-MONOMER (LptA)
     - ABC-53-CPLX (LptABCFG ABC transporter)

- G7663 (kdsC) (b3198)
   Products of gene:
     - G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
     - KDO-8PPHOSPHAT-CPLX (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase)
       Reactions:
        3-deoxy-D-manno-octulosonate 8-P + H2O  ->  3-deoxy-D-manno-octulosonate + phosphate
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)
         PWY-5111 (PWY-5111)
         PWY-1269 (CMP-KDO biosynthesis I)

- G7659 (mlaC) (b3192)
   Products of gene:
     - G7659-MONOMER (MlaC)
     - ABC-45-CPLX (phospholipid ABC transporter)

- G7657 (yrbA) (b3190)
   Products of gene:
     - G7657-MONOMER (predicted DNA-binding transcriptional regulator)

- EG12799 (mlaD) (b3193)
   Products of gene:
     - EG12799-MONOMER (MlaD)
     - ABC-45-CPLX (phospholipid ABC transporter)

- EG11652 (degS) (b3235)
   Products of gene:
     - EG11652-MONOMER (DegS serine endoprotease)

- EG10908 (rpsI) (b3230)
   Products of gene:
     - EG10908-MONOMER (30S ribosomal subunit protein S9)
     - CPLX0-3953 (30S ribosomal subunit)
       Regulatees:
        TU00345 (rpsB-tsf)
     - CPLX0-3964 (ribosome)

- EG10874 (rplM) (b3231)
   Products of gene:
     - EG10874-MONOMER (50S ribosomal subunit protein L13)
     - CPLX0-3962 (50S ribosomal subunit)
     - CPLX0-3964 (ribosome)



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 172
Effective number of orgs (counting one per cluster within 468 clusters): 109

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XFAS405440 ncbi Xylella fastidiosa M127
XFAS183190 ncbi Xylella fastidiosa Temecula17
XFAS160492 ncbi Xylella fastidiosa 9a5c7
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1148
VEIS391735 ncbi Verminephrobacter eiseniae EF01-28
VCHO345073 ncbi Vibrio cholerae O3958
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169618
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252598
TCRU317025 ncbi Thiomicrospira crunogena XCL-27
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
SSP94122 ncbi Shewanella sp. ANA-38
SSON300269 ncbi Shigella sonnei Ss0468
SSED425104 ncbi Shewanella sediminis HAW-EB38
SPRO399741 ncbi Serratia proteamaculans 5688
SPEA398579 ncbi Shewanella pealeana ATCC 7003458
SONE211586 ncbi Shewanella oneidensis MR-18
SLOI323850 ncbi Shewanella loihica PV-48
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SHAL458817 ncbi Shewanella halifaxensis HAW-EB48
SGLO343509 ncbi Sodalis glossinidius morsitans8
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1978
SDEN318161 ncbi Shewanella denitrificans OS2178
SDEG203122 ncbi Saccharophagus degradans 2-407
SBOY300268 ncbi Shigella boydii Sb2278
SBAL402882 ncbi Shewanella baltica OS1858
SBAL399599 ncbi Shewanella baltica OS1958
RSOL267608 ncbi Ralstonia solanacearum GMI10008
RMET266264 ncbi Ralstonia metallidurans CH347
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1347
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30008
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a8
PSTU379731 ncbi Pseudomonas stutzeri A15017
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-17
PSP296591 ncbi Polaromonas sp. JS6668
PPUT76869 ncbi Pseudomonas putida GB-18
PPUT351746 ncbi Pseudomonas putida F18
PPUT160488 ncbi Pseudomonas putida KT24408
PPRO298386 ncbi Photobacterium profundum SS98
PNAP365044 ncbi Polaromonas naphthalenivorans CJ28
PMUL272843 ncbi Pasteurella multocida multocida Pm708
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO18
PING357804 ncbi Psychromonas ingrahamii 378
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1258
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW258
PFLU205922 ncbi Pseudomonas fluorescens Pf0-18
PENT384676 ncbi Pseudomonas entomophila L488
PCAR338963 ncbi Pelobacter carbinolicus DSM 23807
PATL342610 ncbi Pseudoalteromonas atlantica T6c8
PAER208964 ncbi Pseudomonas aeruginosa PAO18
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA148
NOCE323261 ncbi Nitrosococcus oceani ATCC 197078
NMUL323848 ncbi Nitrosospira multiformis ATCC 251968
NMEN374833 ncbi Neisseria meningitidis 0534427
NMEN272831 ncbi Neisseria meningitidis FAM187
NMEN122587 ncbi Neisseria meningitidis Z24917
NMEN122586 ncbi Neisseria meningitidis MC587
NGON242231 ncbi Neisseria gonorrhoeae FA 10907
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197187
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E8
MSP400668 ncbi Marinomonas sp. MWYL17
MPET420662 ncbi Methylibium petroleiphilum PM18
MFLA265072 ncbi Methylobacillus flagellatus KT8
MCAP243233 ncbi Methylococcus capsulatus Bath8
MAQU351348 ncbi Marinobacter aquaeolei VT87
LPNE400673 ncbi Legionella pneumophila Corby8
LPNE297246 ncbi Legionella pneumophila Paris8
LPNE297245 ncbi Legionella pneumophila Lens8
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 18
LCHO395495 ncbi Leptothrix cholodnii SP-68
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
JSP375286 ncbi Janthinobacterium sp. Marseille8
ILOI283942 ncbi Idiomarina loihiensis L2TR8
HSOM228400 ncbi Haemophilus somnus 23368
HSOM205914 ncbi Haemophilus somnus 129PT8
HINF71421 ncbi Haemophilus influenzae Rd KW208
HINF374930 ncbi Haemophilus influenzae PittEE8
HINF281310 ncbi Haemophilus influenzae 86-028NP8
HHAL349124 ncbi Halorhodospira halophila SL18
HDUC233412 ncbi Haemophilus ducreyi 35000HP8
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans8
GURA351605 ncbi Geobacter uraniireducens Rf47
GMET269799 ncbi Geobacter metallireducens GS-157
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DARO159087 ncbi Dechloromonas aromatica RCB8
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSAL290398 ncbi Chromohalobacter salexigens DSM 30438
CPSY167879 ncbi Colwellia psychrerythraea 34H8
CJAP155077 Cellvibrio japonicus7
BVIE269482 ncbi Burkholderia vietnamiensis G48
BTHA271848 ncbi Burkholderia thailandensis E2648
BSP36773 Burkholderia sp.8
BPSE320373 ncbi Burkholderia pseudomallei 6688
BPSE320372 ncbi Burkholderia pseudomallei 1710b8
BPSE272560 ncbi Burkholderia pseudomallei K962438
BPET94624 Bordetella petrii7
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128227
BMAL320389 ncbi Burkholderia mallei NCTC 102478
BMAL320388 ncbi Burkholderia mallei SAVP18
BMAL243160 ncbi Burkholderia mallei ATCC 233448
BCEN331272 ncbi Burkholderia cenocepacia HI24248
BCEN331271 ncbi Burkholderia cenocepacia AU 10548
BBRO257310 ncbi Bordetella bronchiseptica RB507
BAMB398577 ncbi Burkholderia ambifaria MC40-68
BAMB339670 ncbi Burkholderia ambifaria AMMD8
ASP76114 ncbi Aromatoleum aromaticum EbN18
ASP62977 ncbi Acinetobacter sp. ADP18
ASP62928 ncbi Azoarcus sp. BH728
ASP232721 ncbi Acidovorax sp. JS427
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4498
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL038
APLE416269 ncbi Actinobacillus pleuropneumoniae L208
AHYD196024 Aeromonas hydrophila dhakensis8
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232707
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-18
ABOR393595 ncbi Alcanivorax borkumensis SK27
ABAU360910 ncbi Bordetella avium 197N7
AAVE397945 ncbi Acidovorax citrulli AAC00-17


Names of the homologs of the genes in the group in each of these orgs
  G7665   G7663   G7659   G7657   EG12799   EG11652   EG10908   EG10874   
YPSE349747 YPSIP31758_0443YPSIP31758_0445YPSIP31758_0451YPSIP31758_0453YPSIP31758_0450YPSIP31758_0455YPSIP31758_0461YPSIP31758_0459
YPSE273123 YPTB3524YPTB3522YPTB3516YPTB3514YPTB3517YPTB3512YPTB3507YPTB3508
YPES386656 YPDSF_0317YPDSF_0319YPDSF_0325YPDSF_0327YPDSF_0324YPDSF_0329YPDSF_0335YPDSF_0334
YPES377628 YPN_3462YPN_3460YPN_3454YPN_3452YPN_3455YPN_3450YPN_3444YPN_3445
YPES360102 YPA_3723YPA_3725YPA_3731YPA_3733YPA_3730YPA_3735YPA_3741YPA_3740
YPES349746 YPANGOLA_A1151YPANGOLA_A1149YPANGOLA_A1143YPANGOLA_A1141YPANGOLA_A1144YPANGOLA_A1139YPANGOLA_A1133YPANGOLA_A1134
YPES214092 YPO3580YPO3578YPO3572YPO3570YPO3573YPO3568YPO3562YPO3563
YPES187410 Y0152Y0150Y0143Y0141Y0144Y0139Y0133Y0134
YENT393305 YE3757YE3755YE3749YE3747YE3750YE3745YE3740YE3741
XORY360094 XOOORF_4032XOOORF_4030XOOORF_5081XOOORF_5080XOOORF_0060XOOORF_0650XOOORF_0649
XORY342109 XOO1185XOO1187XOO0278XOO0279XOO0115XOO3928XOO3929
XORY291331 XOO1286XOO1288XOO0307XOO0308XOO0059XOO4152XOO4153
XFAS405440 XFASM12_0758XFASM12_0760XFASM12_1819XFASM12_1818XFASM12_0250XFASM12_0875XFASM12_0876
XFAS183190 PD_0639PD_0641PD_1657PD_1656PD_0231PD_0751PD_0752
XFAS160492 XF1410XF1412XF0418XF0419XF0285XF1536XF1537
XCAM487884 XCC-B100_1360XCC-B100_1362XCC-B100_4430XCC-B100_4429XCC-B100_4087XCC-B100_0507XCC-B100_0506
XCAM316273 XCAORF_3171XCAORF_3169XCAORF_4554XCAORF_4553XCAORF_0378XCAORF_4035XCAORF_4036
XCAM314565 XC_1313XC_1315XC_4299XC_4298XC_3986XC_0491XC_0490
XCAM190485 XCC2800XCC2798XCC4210XCC4209XCC3898XCC0477XCC0476
XAXO190486 XAC2970XAC2968XAC4342XAC4341XAC3980XAC0488XAC0487
VVUL216895 VV1_0690VV1_0688VV1_0682VV1_0680VV1_0683VV1_0604VV1_0598VV1_0599
VVUL196600 VV0450VV0452VV0458VV0460VV0457VV0590VV0595VV0594
VPAR223926 VP2668VP2661VP2659VP2662VP0432VP0439VP0438
VFIS312309 VF0389VF0391VF0397VF0400VF0396VF2226VF2221VF2222
VEIS391735 VEIS_0576VEIS_0153VEIS_2401VEIS_4454VEIS_2399VEIS_1784VEIS_2639VEIS_2638
VCHO345073 VC0395_A2107VC0395_A2105VC0395_A2099VC0395_A2097VC0395_A2100VC0395_A0099VC0395_A0104VC0395_A0103
VCHO VC2527VC2524VC2517VC2515VC2518VC0565VC0571VC0570
TDEN292415 TBD_0535TBD_0537TBD_1896TBD_1892TBD_1898TBD_1834TBD_0454TBD_0453
TCRU317025 TCR_0974TCR_0976TCR_0982TCR_0548TCR_0981TCR_0462TCR_0461
STYP99287 STM3318STM3316STM3310STM3308STM3311STM3349STM3344STM3345
SSP94122 SHEWANA3_0674SHEWANA3_0676SHEWANA3_0681SHEWANA3_0683SHEWANA3_0680SHEWANA3_0689SHEWANA3_0693SHEWANA3_0692
SSON300269 SSO_3348SSO_3346SSO_3340SSO_3338SSO_3341SSO_3376SSO_3371SSO_3372
SSED425104 SSED_0728SSED_0730SSED_0736SSED_0738SSED_0735SSED_0743SSED_0748SSED_0747
SPRO399741 SPRO_4365SPRO_4363SPRO_4357SPRO_4355SPRO_4358SPRO_4353SPRO_4348SPRO_4349
SPEA398579 SPEA_3614SPEA_3612SPEA_3606SPEA_3604SPEA_3607SPEA_3599SPEA_3594SPEA_3595
SONE211586 SO_3959SO_3957SO_3951SO_3949SO_3952SO_3943SO_3939SO_3940
SLOI323850 SHEW_3309SHEW_3307SHEW_3301SHEW_3299SHEW_3302SHEW_3297SHEW_3293SHEW_3294
SHIGELLA YHBNYRBIYRBCYRBAVPSCDEGSRPSIRPLM
SHAL458817 SHAL_3703SHAL_3701SHAL_3695SHAL_3693SHAL_3696SHAL_3687SHAL_3682SHAL_3683
SGLO343509 SG0201SG0203SG0208SG0210SG0207SG0212SG0217SG0216
SFLE373384 SFV_3230SFV_3228SFV_3222SFV_3220SFV_3223SFV_3262SFV_3257SFV_3258
SFLE198214 AAN44706.1AAN44704.1AAN44698.1AAN44696.1AAN44699.1AAN44739.1AAN44734.1AAN44735.1
SENT454169 SEHA_C3615SEHA_C3613SEHA_C3607SEHA_C3605SEHA_C3608SEHA_C3647SEHA_C3642SEHA_C3643
SENT321314 SCH_3256SCH_3254SCH_3248SCH_3246SCH_3249SCH_3287SCH_3282SCH_3283
SENT295319 SPA3185SPA3183SPA3177SPA3175SPA3178SPA3216SPA3211SPA3212
SENT220341 STY3497STY3495STY3489STY3487STY3490STY3529STY3524STY3525
SENT209261 T3235T3233T3227T3225T3228T3265T3260T3261
SDYS300267 SDY_3381SDY_3379SDY_3373SDY_3371SDY_3374SDY_3411SDY_3406SDY_3407
SDEN318161 SDEN_0491SDEN_0493SDEN_0499SDEN_0501SDEN_0498SDEN_0503SDEN_0507SDEN_0506
SDEG203122 SDE_3177SDE_3175SDE_3172SDE_3171SDE_3167SDE_3163SDE_3164
SBOY300268 SBO_3182SBO_3184SBO_3190SBO_3192SBO_3189SBO_3154SBO_3159SBO_3158
SBAL402882 SHEW185_0688SHEW185_0690SHEW185_0695SHEW185_0697SHEW185_0694SHEW185_0699SHEW185_0703SHEW185_0702
SBAL399599 SBAL195_0718SBAL195_0720SBAL195_0725SBAL195_0727SBAL195_0724SBAL195_0729SBAL195_0733SBAL195_0732
RSOL267608 RSC0410RSC0412RSC2958RSC2954RSC2960RSC2932RSC0491RSC0490
RMET266264 RMET_0305RMET_3255RMET_3251RMET_3257RMET_3233RMET_0411RMET_0410
RFER338969 RFER_4236RFER_2063RFER_2943RFER_2937RFER_2959RFER_0722RFER_0721
REUT381666 H16_A0389H16_A3423H16_A3419H16_A3425H16_A3401H16_A0483H16_A0482
REUT264198 REUT_A0357REUT_A3118REUT_A3114REUT_A3120REUT_A3096REUT_A0469REUT_A0468
PSYR223283 PSPTO_4451PSPTO_4449PSPTO_4444PSPTO_4442PSPTO_4445PSPTO_4435PSPTO_4425PSPTO_4426
PSYR205918 PSYR_4145PSYR_4143PSYR_4138PSYR_4136PSYR_4139PSYR_4130PSYR_4119PSYR_4120
PSTU379731 PST_1033PST_1035PST_1043PST_1039PST_1048PST_1062PST_1061
PSP312153 PNUC_1908PNUC_0100PNUC_0104PNUC_0098PNUC_0123PNUC_1885PNUC_1886
PSP296591 BPRO_4487BPRO_4897BPRO_0797BPRO_0801BPRO_0795BPRO_0817BPRO_4112BPRO_4113
PPUT76869 PPUTGB1_0961PPUTGB1_0963PPUTGB1_0968PPUTGB1_0970PPUTGB1_0967PPUTGB1_4548PPUTGB1_4533PPUTGB1_4534
PPUT351746 PPUT_0993PPUT_0995PPUT_1000PPUT_1002PPUT_0999PPUT_4424PPUT_4408PPUT_4409
PPUT160488 PP_0954PP_0956PP_0961PP_0963PP_0960PP_1301PP_1316PP_1315
PPRO298386 PBPRA3253PBPRA3251PBPRA3245PBPRA3243PBPRA3246PBPRA3241PBPRA3236PBPRA3237
PNAP365044 PNAP_3708PNAP_4107PNAP_0689PNAP_0693PNAP_0687PNAP_0709PNAP_0501PNAP_0500
PMUL272843 PM0172PM0524PM0177PM0179PM0176PM0748PM0521PM0520
PMEN399739 PMEN_0872PMEN_0874PMEN_0881PMEN_0878PMEN_0888PMEN_0902PMEN_0901
PLUM243265 PLU4039PLU4037PLU4031PLU4029PLU4032PLU4022PLU4014PLU4015
PING357804 PING_2890PING_2888PING_2884PING_2882PING_2885PING_2880PING_2876PING_2877
PHAL326442 PSHAA2549PSHAA2547PSHAA2541PSHAA2539PSHAA2542PSHAA2537PSHAA2531PSHAA2532
PFLU220664 PFL_0917PFL_0919PFL_0926PFL_0923PFL_0933PFL_5081PFL_5082
PFLU216595 PFLU0884PFLU0886PFLU0891PFLU0893PFLU0890PFLU0758PFLU0840PFLU0839
PFLU205922 PFL_0859PFL_0861PFL_0866PFL_0868PFL_0865PFL_0875PFL_4693PFL_4694
PENT384676 PSEEN1095PSEEN1097PSEEN1102PSEEN1104PSEEN1101PSEEN4521PSEEN4506PSEEN4507
PCAR338963 PCAR_1940PCAR_1942PCAR_0451PCAR_0449PCAR_2948PCAR_1899PCAR_1900
PATL342610 PATL_0566PATL_0564PATL_0558PATL_0556PATL_0559PATL_0554PATL_3702PATL_3703
PAER208964 PA4460PA4458PA4453PA4451PA4454PA4446PA4432PA4433
PAER208963 PA14_57920PA14_57900PA14_57840PA14_57820PA14_57850PA14_57760PA14_57580PA14_57590
NOCE323261 NOC_2791NOC_2789NOC_2782NOC_2387NOC_2784NOC_2139NOC_2837NOC_2836
NMUL323848 NMUL_A0086NMUL_A0088NMUL_A2746NMUL_A2742NMUL_A2747NMUL_A0510NMUL_A0560NMUL_A0561
NMEN374833 NMCC_1787NMCC_1789NMCC_0252NMCC_0009NMCC_0251NMCC_0130NMCC_0129
NMEN272831 NMC1813NMC1815NMC1935NMC2147NMC1936NMC2037NMC2038
NMEN122587 NMA2132NMA2134NMA0488NMA0256NMA0487NMA0379NMA0378
NMEN122586 NMB_0355NMB_0353NMB_1963NMB_0009NMB_1964NMB_2056NMB_2057
NGON242231 NGO1606NGO1608NGO2119NGO1920NGO2118NGO2025NGO2024
NEUT335283 NEUT_2301NEUT_0854NEUT_0858NEUT_0853NEUT_1685NEUT_0763NEUT_0762
NEUR228410 NE0064NE2381NE2377NE2382NE1508NE1483NE1484
MSUC221988 MS1715MS0995MS1710MS1708MS1711MS1373MS1282MS1283
MSP400668 MMWYL1_2416MMWYL1_1125MMWYL1_2409MMWYL1_2411MMWYL1_2404MMWYL1_2399MMWYL1_2400
MPET420662 MPE_A0150MPE_A3808MPE_A3097MPE_A0828MPE_A3099MPE_A0844MPE_A3156MPE_A3157
MFLA265072 MFLA_0140MFLA_0138MFLA_0240MFLA_0244MFLA_0239MFLA_0261MFLA_0056MFLA_0055
MCAP243233 MCA_0743MCA_0745MCA_2792MCA_0260MCA_1967MCA_2343MCA_0905MCA_0904
MAQU351348 MAQU_2713MAQU_2711MAQU_2706MAQU_2704MAQU_2707MAQU_2471MAQU_2472
LPNE400673 LPC_2458LPC_2456LPC_2451LPC_2449LPC_2452LPC_0747LPC_0429LPC_0428
LPNE297246 LPP0899LPP0901LPP0906LPP0908LPP0905LPP1285LPP2761LPP2762
LPNE297245 LPL0868LPL0870LPL0875LPL0877LPL0874LPL1284LPL2634LPL2635
LPNE272624 LPG0837LPG0839LPG0844LPG0846LPG0843LPG1331LPG2706LPG2707
LCHO395495 LCHO_4227LCHO_0183LCHO_3390LCHO_1584LCHO_3392LCHO_1605LCHO_3451LCHO_3452
KPNE272620 GKPORF_B2945GKPORF_B2943GKPORF_B2937GKPORF_B2935GKPORF_B2938GKPORF_B2969GKPORF_B2964GKPORF_B2965
JSP375286 MMA_3350MMA_3348MMA_3295MMA_3291MMA_3297MMA_3275MMA_0295MMA_0294
ILOI283942 IL0398IL0400IL0406IL0408IL0405IL0410IL0415IL0414
HSOM228400 HSM_1592HSM_1397HSM_1587HSM_1585HSM_1588HSM_1533HSM_1220HSM_1219
HSOM205914 HS_1175HS_0919HS_1170HS_1168HS_1171HS_1049HS_0753HS_0752
HINF71421 HI_1149HI_1679HI_1084HI_1082HI_1085HI_0945HI_1442HI_1443
HINF374930 CGSHIEE_06300CGSHIEE_03665CGSHIEE_06645CGSHIEE_06655CGSHIEE_06640CGSHIEE_07240CGSHIEE_04810CGSHIEE_04815
HINF281310 NTHI1317NTHI1982NTHI1247NTHI1245NTHI1248NTHI1116NTHI1688NTHI1687
HHAL349124 HHAL_2124HHAL_2122HHAL_2117HHAL_2115HHAL_2118HHAL_2110HHAL_2076HHAL_2077
HDUC233412 HD_0587HD_0297HD_0256HD_0254HD_0257HD_1350HD_1493HD_1494
HCHE349521 HCH_05318HCH_05316HCH_05308HCH_05312HCH_05303HCH_05901HCH_05902
HARS204773 HEAR3107HEAR3105HEAR3076HEAR3072HEAR3078HEAR3056HEAR0241HEAR0240
GURA351605 GURA_2974GURA_2976GURA_1043GURA_1041GURA_4295GURA_1050GURA_1049
GMET269799 GMET_1281GMET_1279GMET_0784GMET_0786GMET_1014GMET_0607GMET_0606
ESP42895 ENT638_3636ENT638_3634ENT638_3628ENT638_3626ENT638_3629ENT638_3670ENT638_3665ENT638_3666
EFER585054 EFER_3177EFER_3175EFER_3169EFER_3167EFER_3170EFER_3206EFER_3201EFER_3202
ECOO157 YHBNYRBIYRBCYRBAYRBDDEGSRPSIRPLM
ECOL83334 ECS4079ECS4077ECS4071ECS4069ECS4072ECS4108ECS4103ECS4104
ECOL585397 ECED1_3858ECED1_3856ECED1_3850ECED1_3848ECED1_3851ECED1_3885ECED1_3880ECED1_3881
ECOL585057 ECIAI39_3695ECIAI39_3693ECIAI39_3687ECIAI39_3685ECIAI39_3688ECIAI39_3725ECIAI39_3720ECIAI39_3721
ECOL585056 ECUMN_3680ECUMN_3678ECUMN_3672ECUMN_3670ECUMN_3673ECUMN_3709ECUMN_3704ECUMN_3705
ECOL585055 EC55989_3618EC55989_3616EC55989_3610EC55989_3608EC55989_3611EC55989_3648EC55989_3643EC55989_3644
ECOL585035 ECS88_3583ECS88_3581ECS88_3574ECS88_3572ECS88_3575ECS88_3611ECS88_3606ECS88_3607
ECOL585034 ECIAI1_3348ECIAI1_3346ECIAI1_3340ECIAI1_3338ECIAI1_3341ECIAI1_3377ECIAI1_3372ECIAI1_3373
ECOL481805 ECOLC_0500ECOLC_0502ECOLC_0508ECOLC_0510ECOLC_0507ECOLC_0471ECOLC_0476ECOLC_0475
ECOL469008 ECBD_0542ECBD_0544ECBD_0550ECBD_0552ECBD_0549ECBD_0512ECBD_0517ECBD_0516
ECOL439855 ECSMS35_3496ECSMS35_3494ECSMS35_3488ECSMS35_3486ECSMS35_3489ECSMS35_3531ECSMS35_3525ECSMS35_3527
ECOL413997 ECB_03065ECB_03063ECB_03057ECB_03055ECB_03058ECB_03095ECB_03090ECB_03091
ECOL409438 ECSE_3484ECSE_3482ECSE_3476ECSE_3474ECSE_3477ECSE_3514ECSE_3509ECSE_3510
ECOL405955 APECO1_3235APECO1_3237APECO1_3243APECO1_3244APECO1_3242APECO1_3209APECO1_3214APECO1_3213
ECOL364106 UTI89_C3636UTI89_C3634UTI89_C3628UTI89_C3624UTI89_C3629UTI89_C3666UTI89_C3660UTI89_C3661
ECOL362663 ECP_3288ECP_3286ECP_3279ECP_3277ECP_3280ECP_3318ECP_3313ECP_3314
ECOL331111 ECE24377A_3688ECE24377A_3686ECE24377A_3679ECE24377A_3676ECE24377A_3681ECE24377A_3718ECE24377A_3713ECE24377A_3714
ECOL316407 ECK3189:JW3167:B3200ECK3187:JW3165:B3198ECK3181:JW3159:B3192ECK3179:JW3157:B3190ECK3182:JW3160:B3193ECK3224:JW3204:B3235ECK3219:JW3199:B3230ECK3220:JW3200:B3231
ECOL199310 C3960C3958C3952C3948C3953C3990C3984C3985
ECAR218491 ECA0290ECA0292ECA0298ECA0300ECA0297ECA0302ECA0307ECA0306
DARO159087 DARO_3421DARO_3419DARO_3398DARO_3394DARO_3400DARO_3371DARO_0650DARO_0649
CVIO243365 CV_3330CV_3328CV_0446CV_0439CV_0447CV_3696CV_3697
CSAL290398 CSAL_2224CSAL_2222CSAL_2217CSAL_2215CSAL_2218CSAL_2211CSAL_2206CSAL_2207
CPSY167879 CPS_4541CPS_4539CPS_4533CPS_4531CPS_4534CPS_4347CPS_4442CPS_4443
CJAP155077 CJA_2803CJA_2801CJA_2798CJA_2797CJA_2792CJA_2786CJA_2787
BVIE269482 BCEP1808_2894BCEP1808_2892BCEP1808_0397BCEP1808_0401BCEP1808_0395BCEP1808_0418BCEP1808_0646BCEP1808_0645
BTHA271848 BTH_I0488BTH_I0490BTH_I3000BTH_I2996BTH_I3002BTH_I2979BTH_I1234BTH_I1233
BSP36773 BCEP18194_A6119BCEP18194_A6117BCEP18194_A3516BCEP18194_A3520BCEP18194_A3514BCEP18194_A3537BCEP18194_A3766BCEP18194_A3765
BPSE320373 BURPS668_0583BURPS668_0585BURPS668_3673BURPS668_3669BURPS668_3675BURPS668_3652BURPS668_3377BURPS668_3378
BPSE320372 BURPS1710B_A0809BURPS1710B_A0811BURPS1710B_A3998BURPS1710B_A3994BURPS1710B_A4000BURPS1710B_A3977BURPS1710B_A3695BURPS1710B_A3696
BPSE272560 BPSL0535BPSL0537BPSL3146BPSL3142BPSL3148BPSL3125BPSL2910BPSL2911
BPET94624 BPET0452BPET0144BPET0141BPET0146BPET0125BPET0594BPET0593
BPER257313 BP0700BP3761BP3765BP3759BP0280BP2961BP2962
BPAR257311 BPP4029BPP4261BPP4264BPP4259BPP4280BPP3883BPP3884
BMAL320389 BMA10247_2944BMA10247_2946BMA10247_2772BMA10247_2768BMA10247_2774BMA10247_2750BMA10247_2520BMA10247_2519
BMAL320388 BMASAVP1_A0074BMASAVP1_A0072BMASAVP1_A3232BMASAVP1_A3236BMASAVP1_A3230BMASAVP1_A3254BMASAVP1_A0254BMASAVP1_A0253
BMAL243160 BMA_3105BMA_3103BMA_2722BMA_2717BMA_2724BMA_2700BMA_2342BMA_2341
BCEN331272 BCEN2424_2789BCEN2424_2787BCEN2424_0418BCEN2424_0422BCEN2424_0416BCEN2424_0439BCEN2424_0680BCEN2424_0679
BCEN331271 BCEN_2175BCEN_2173BCEN_2689BCEN_2685BCEN_2691BCEN_2668BCEN_0197BCEN_0196
BBRO257310 BB4502BB4848BB4851BB4846BB4867BB4356BB4357
BAMB398577 BAMMC406_2707BAMMC406_2705BAMMC406_0345BAMMC406_0349BAMMC406_0343BAMMC406_0366BAMMC406_0600BAMMC406_0599
BAMB339670 BAMB_2849BAMB_2847BAMB_0336BAMB_0340BAMB_0334BAMB_0357BAMB_0574BAMB_0573
ASP76114 EBA1320EBA1316EBA2206EBA1303EBA1311EBA1283EBA937EBA938
ASP62977 ACIAD1485ACIAD1483ACIAD3241ACIAD0659ACIAD3242ACIAD1348ACIAD3013ACIAD3012
ASP62928 AZO0791AZO0793AZO0810AZO0814AZO0808AZO3337AZO2759AZO2760
ASP232721 AJS_4131AJS_0752AJS_0757AJS_0750AJS_0784AJS_0626AJS_0625
ASAL382245 ASA_0313ASA_0311ASA_0306ASA_0304ASA_0307ASA_0329ASA_0334ASA_0333
APLE434271 APJL_0353APJL_0051APJL_1302APJL_1300APJL_1303APJL_0744APJL_0595APJL_0594
APLE416269 APL_0337APL_0051APL_1289APL_1287APL_1290APL_0742APL_0601APL_0600
AHYD196024 AHA_3925AHA_3927AHA_3932AHA_3934AHA_3931AHA_3909AHA_3904AHA_3905
AFER243159 AFE_0083AFE_0081AFE_2865AFE_0073AFE_2866AFE_0036AFE_0035
AEHR187272 MLG_2228MLG_2226MLG_2220MLG_2218MLG_2221MLG_2213MLG_2241MLG_2242
ABOR393595 ABO_0554ABO_0556ABO_0558ABO_0559ABO_0565ABO_0577ABO_0576
ABAU360910 BAV3115BAV3308BAV3311BAV3306BAV3326BAV2969BAV2970
AAVE397945 AAVE_0417AAVE_4784AAVE_1017AAVE_1021AAVE_1015AAVE_4052AAVE_4053


Organism features enriched in list (features available for 165 out of the 172 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00010621292
Arrangment:Pairs 0.005537042112
Disease:Bubonic_plague 0.000481066
Disease:Dysentery 0.000481066
Disease:Gastroenteritis 0.00029901013
Disease:Legionnaire's_disease 0.006249444
Disease:Meningitis_and_septicemia 0.006249444
Endospores:No 2.729e-832211
GC_Content_Range4:0-40 1.995e-2312213
GC_Content_Range4:40-60 4.681e-12100224
GC_Content_Range4:60-100 0.003564353145
GC_Content_Range7:30-40 1.035e-1412166
GC_Content_Range7:50-60 2.531e-1261107
GC_Content_Range7:60-70 0.000463653134
Genome_Size_Range5:0-2 4.285e-214155
Genome_Size_Range5:2-4 0.000170038197
Genome_Size_Range5:4-6 1.567e-20100184
Genome_Size_Range5:6-10 0.00092952347
Genome_Size_Range9:1-2 4.072e-164128
Genome_Size_Range9:2-3 0.003735223120
Genome_Size_Range9:4-5 1.338e-74996
Genome_Size_Range9:5-6 1.464e-105188
Genome_Size_Range9:6-8 0.00005602238
Gram_Stain:Gram_Neg 9.441e-32153333
Habitat:Specialized 0.0013561653
Motility:No 1.505e-1113151
Motility:Yes 3.420e-11111267
Optimal_temp.:35-37 5.265e-81313
Oxygen_Req:Anaerobic 7.311e-106102
Oxygen_Req:Facultative 4.427e-885201
Pathogenic_in:No 4.711e-641226
Pathogenic_in:Plant 0.00028301115
Shape:Coccus 0.0000102882
Shape:Rod 3.627e-14137347
Shape:Spiral 0.0008386234
Temp._range:Mesophilic 0.0002628148473
Temp._range:Thermophilic 0.0000864135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 178
Effective number of orgs (counting one per cluster within 468 clusters): 154

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 71
SSOL273057 ncbi Sulfolobus solfataricus P21
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPNE170187 ncbi Streptococcus pneumoniae G541
SMAR399550 ncbi Staphylothermus marinus F10
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SARE391037 ncbi Salinispora arenicola CNS-2051
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RALB246199 Ruminococcus albus 80
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 231
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GFOR411154 ncbi Gramella forsetii KT08031
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI31
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4110
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.921
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1351
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
AMAR234826 ncbi Anaplasma marginale St. Maries1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7665   G7663   G7659   G7657   EG12799   EG11652   EG10908   EG10874   
UURE95667 UU576
UURE95664 UUR10_0676
UPAR505682 UPA3_0615
UMET351160 RCIX953
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TPAL243276
TLET416591
TKOD69014
TERY203124 TERY_0678
TDEN243275 TDE_0852
TACI273075
STRO369723 STROP_3864
STOK273063 ST1422
SSOL273057 SSO0094
SRUB309807 SRU_0038
SPNE170187 SPN08184
SMAR399550
SERY405948 SACE_6781
SARE391037 SARE_4254
SALA317655 SALA_0244
SACI330779
RSAL288705
RALB246199
PTOR263820
PRUM264731 GFRORF1206
PMOB403833 PMOB_0800
PMAR59920 PMN2A_1103
PMAR167555 NATL1_19781
PMAR167546 P9301ORF_1757
PISL384616
PHOR70601
PGIN242619 PG_0658
PFUR186497
PDIS435591 BDI_0168
PAST100379 PAM139
PARS340102
PAER178306
PACN267747 PPA1803
PABY272844
OTSU357244 OTBS_1584
NSP35761 NOCA_2820
NSEN222891
NPHA348780
MVAN350058 MVAN_0923
MTUB419947 MRA_1978
MTUB336982 TBFG_11998
MTHE349307
MTHE187420 MTH1071
MTBRV RV1967
MTBCDC MT2019
MSYN262723
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196 MSMEG_0347
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243 MAV_0658
MART243272
MAEO419665
MACE188937 MA3766
MABS561007 MAB_4564C
LXYL281090 LXX20030
LSPH444177 BSPH_4582
LMES203120 LEUM_0231
LJOH257314 LJ_0367
LINT267671 LIC_10761
LINT189518 LA3408
LHEL405566 LHV_0344
LGAS324831 LGAS_0322
LDEL321956 LBUL_0383
LCAS321967
LBOR355277 LBJ_0760
LBOR355276 LBL_2318
LBIF456481 LEPBI_I1388
LBIF355278 LBF_1334
LACI272621 LBA0324
KRAD266940 KRAD_0720
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMAR272569
HBUT415426
HAUR316274
GVIO251221 GSR4417
GFOR411154 GFO_1811
FSUC59374 FSU1421
FSP1855
FSP106370 FRANCCI3_0614
FNOD381764 FNOD_0433
FMAG334413 FMG_1478
FALN326424
ERUM302409 ERGA_CDS_01180
ERUM254945 ERWE_CDS_01220
EFAE226185 EF_3230
ECHA205920 ECH_0183
ECAN269484 ECAJ_0123
DSP255470
DSP216389
DRAD243230
DGEO319795 DGEO_1734
DETH243164
CTRA471473
CTRA471472
CSUL444179
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380 CPR_2363
CPER195103 CPF_2678
CPER195102 CPE2369
CPEL335992 SAR11_0036
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEI306537
CGLU196627
CFET360106 CFF8240_1188
CFEL264202
CEFF196164
CDIP257309
CDES477974 DAUD_0331
CCUR360105 CCV52592_0456
CCAV227941
CBEI290402 CBEI_0187
CABO218497
BXEN266265 BXE_B0016
BTUR314724 BT0338
BLON206672 BL1572
BHER314723 BH0338
BGAR290434 BG0339
BBUR224326 BB_0338
BAFZ390236 BAPKO_0347
AYEL322098 AYWB_581
AURANTIMONAS
ASP1667
APHA212042 APH_0045
APER272557
AMAR234826 AM074
AFUL224325
ACEL351607 ACEL_0341
AAUR290340


Organism features enriched in list (features available for 170 out of the 178 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00040701492
Arrangment:Pairs 0.001047320112
Arrangment:Singles 0.002113998286
Disease:Leptospirosis 0.007049644
Disease:Pharyngitis 0.000046488
Disease:bronchitis_and_pneumonitis 0.000046488
Endospores:No 5.802e-15103211
GC_Content_Range7:0-30 4.318e-62847
GC_Content_Range7:50-60 0.000244117107
Genome_Size_Range5:0-2 2.120e-1280155
Genome_Size_Range5:4-6 1.066e-826184
Genome_Size_Range9:0-1 1.056e-72127
Genome_Size_Range9:1-2 1.804e-659128
Genome_Size_Range9:4-5 0.00042781596
Genome_Size_Range9:5-6 0.00004631188
Gram_Stain:Gram_Neg 1.485e-1554333
Gram_Stain:Gram_Pos 0.005522855150
Habitat:Multiple 0.000054933178
Habitat:Specialized 0.00169662553
Motility:No 0.000097262151
Motility:Yes 0.000094358267
Optimal_temp.:- 0.004337862257
Optimal_temp.:37 0.003357142106
Optimal_temp.:85 0.007049644
Oxygen_Req:Anaerobic 4.310e-649102
Oxygen_Req:Facultative 8.279e-832201
Pathogenic_in:Human 0.005384250213
Salinity:Extreme_halophilic 0.002890867
Shape:Irregular_coccus 4.408e-101717
Shape:Rod 1.369e-871347
Shape:Sphere 6.066e-71619
Temp._range:Hyperthermophilic 8.314e-71823
Temp._range:Mesophilic 0.0005948124473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181530.6987
GLYCOCAT-PWY (glycogen degradation I)2461580.6617
AST-PWY (arginine degradation II (AST pathway))1201020.6270
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001680.6120
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951300.5897
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761220.5854
PWY-1269 (CMP-KDO biosynthesis I)3251690.5698
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251380.5672
PWY-5918 (heme biosynthesis I)2721530.5640
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911240.5550
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861550.5479
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911560.5445
PWY-5386 (methylglyoxal degradation I)3051600.5444
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961570.5412
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901550.5394
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491040.5291
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481690.5273
GLUCONSUPER-PWY (D-gluconate degradation)2291340.5271
PWY-4041 (γ-glutamyl cycle)2791500.5269
PWY-5913 (TCA cycle variation IV)3011540.5094
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81700.5086
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491380.5076
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491380.5076
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391640.5076
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831120.4846
TYRFUMCAT-PWY (tyrosine degradation I)1841120.4817
PWY-5148 (acyl-CoA hydrolysis)2271270.4799
GALACTITOLCAT-PWY (galactitol degradation)73630.4783
LIPASYN-PWY (phospholipases)2121210.4734
GLUCARDEG-PWY (D-glucarate degradation I)152980.4685
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911120.4615
PWY0-981 (taurine degradation IV)106770.4561
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291520.4399
PWY0-1182 (trehalose degradation II (trehalase))70580.4397
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116790.4333
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94690.4318
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981670.4270
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135860.4247
REDCITCYC (TCA cycle variation II)1741010.4238
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96690.4226
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551280.4206
PWY-6196 (serine racemization)102710.4157
DAPLYSINESYN-PWY (lysine biosynthesis I)3421520.4155
KDOSYN-PWY (KDO transfer to lipid IVA I)1801020.4143
PWY-3162 (tryptophan degradation V (side chain pathway))94670.4118
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001400.4108
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221700.4108
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791010.4093
P601-PWY (D-camphor degradation)95670.4072
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161680.4051
PWY-6134 (tyrosine biosynthesis IV)89640.4046
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651560.4026
PWY-5783 (octaprenyl diphosphate biosynthesis)165950.4023



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7663   G7659   G7657   EG12799   EG11652   EG10908   EG10874   
G76650.9997630.9992930.9993630.9993310.9988830.9985420.99859
G76630.9992450.9992990.9993150.9988350.9986440.998613
G76590.999720.9998350.9992620.9985150.998608
G76570.9996970.999430.9988280.998676
EG127990.9992860.9985740.998676
EG116520.9992130.999241
EG109080.999998
EG10874



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PAIRWISE BLAST SCORES:

  G7665   G7663   G7659   G7657   EG12799   EG11652   EG10908   EG10874   
G76650.0f0-------
G7663-0.0f0------
G7659--0.0f0-----
G7657---0.0f0----
EG12799----0.0f0---
EG11652-----0.0f0--
EG10908------0.0f0-
EG10874-------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-45-CPLX (phospholipid ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.250, average score: 0.999)
  Genes in pathway or complex:
             0.9979 0.9967 G7658 (mlaB) G7658-MONOMER (MlaB)
   *in cand* 0.9993 0.9986 EG12799 (mlaD) EG12799-MONOMER (MlaD)
             0.9992 0.9982 EG12800 (mlaE) YRBE-MONOMER (MlaE)
             0.9992 0.9984 EG12801 (mlaF) YRBF-MONOMER (MlaF)
   *in cand* 0.9993 0.9985 G7659 (mlaC) G7659-MONOMER (MlaC)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9991 0.9986 EG10874 (rplM) EG10874-MONOMER (50S ribosomal subunit protein L13)
   *in cand* 0.9990 0.9985 EG10908 (rpsI) EG10908-MONOMER (30S ribosomal subunit protein S9)
   *in cand* 0.9993 0.9988 EG11652 (degS) EG11652-MONOMER (DegS serine endoprotease)
   *in cand* 0.9994 0.9987 G7657 (yrbA) G7657-MONOMER (predicted DNA-binding transcriptional regulator)
   *in cand* 0.9992 0.9986 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
   *in cand* 0.9992 0.9985 G7665 (lptA) YHBN-MONOMER (LptA)

- CPLX0-3964 (ribosome) (degree of match pw to cand: 0.034, degree of match cand to pw: 0.250, average score: 0.685)
  Genes in pathway or complex:
                NIL    NIL EG30077 (rrlA) RRLA-RRNA (23S ribosomal RNA (rrlA))
                NIL    NIL EG30070 (rrfA) RRFA-RRNA (5S ribosomal RNA (rrfA))
             0.9421 0.7942 EG10864 (rplA) EG10864-MONOMER (50S ribosomal subunit protein L1)
             0.9780 0.9216 EG10865 (rplB) EG10865-MONOMER (50S ribosomal subunit protein L2)
             0.9772 0.9261 EG10866 (rplC) EG10866-MONOMER (50S ribosomal subunit protein L3)
             0.9732 0.9018 EG10867 (rplD) EG10867-MONOMER (50S ribosomal subunit protein L4)
             0.9793 0.9174 EG10868 (rplE) EG10868-MONOMER (50S ribosomal subunit protein L5)
             0.9778 0.9105 EG10869 (rplF) EG10869-MONOMER (50S ribosomal subunit protein L6)
             0.9267 0.6852 EG10873 (rplL) MONOMER0-2811 (50S ribosomal subunit protein L7)
             0.9429 0.7825 EG10871 (rplJ) EG10871-MONOMER (50S ribosomal subunit protein L10)
             0.8372 0.6130 EG10870 (rplI) EG10870-MONOMER (50S ribosomal subunit protein L9)
             0.9395 0.7985 EG10872 (rplK) EG10872-MONOMER (50S ribosomal subunit protein L11)
   *in cand* 0.9991 0.9986 EG10874 (rplM) EG10874-MONOMER (50S ribosomal subunit protein L13)
             0.9784 0.9268 EG10875 (rplN) EG10875-MONOMER (50S ribosomal subunit protein L14)
             0.9787 0.9208 EG10876 (rplO) EG10876-MONOMER (50S ribosomal subunit protein L15)
             0.9721 0.8699 EG10877 (rplP) EG10877-MONOMER (50S ribosomal subunit protein L16)
             0.9809 0.9268 EG10878 (rplQ) EG10878-MONOMER (50S ribosomal subunit protein L17)
             0.9785 0.9247 EG10879 (rplR) EG10879-MONOMER (50S ribosomal subunit protein L18)
             0.1471 0.0022 EG10880 (rplS) EG10880-MONOMER (50S ribosomal subunit protein L19)
             0.0091 0.0014 EG10881 (rplT) EG10881-MONOMER (50S ribosomal subunit protein L20)
             0.9850 0.9727 EG50001 (rplU) EG50001-MONOMER (50S ribosomal subunit protein L21)
             0.9797 0.9353 EG10882 (rplV) EG10882-MONOMER (50S ribosomal subunit protein L22)
             0.9773 0.9220 EG10883 (rplW) EG10883-MONOMER (50S ribosomal subunit protein L23)
             0.9809 0.9368 EG10884 (rplX) EG10884-MONOMER (50S ribosomal subunit protein L24)
             0.6248 0.2152 EG10885 (rplY) EG10885-MONOMER (50S ribosomal subunit protein L25)
             0.9776 0.9592 EG50002 (rpmA) EG50002-MONOMER (50S ribosomal subunit protein L27)
             0.8021 0.4710 EG10886 (rpmB) EG10886-MONOMER (50S ribosomal subunit protein L28)
             0.9799 0.9355 EG10887 (rpmC) EG10887-MONOMER (50S ribosomal subunit protein L29)
             0.9805 0.9338 EG10888 (rpmD) EG10888-MONOMER (50S ribosomal subunit protein L30)
             0.8927 0.7947 EG10889 (rpmE) EG10889-MONOMER (50S ribosomal subunit protein L31)
             0.0239 0.0006 EG10890 (rpmF) EG10890-MONOMER (50S ribosomal subunit protein L32)
             0.9514 0.8813 EG10891 (rpmG) EG10891-MONOMER (50S ribosomal subunit protein L33)
             0.8426 0.7008 EG10892 (rpmH) EG10892-MONOMER (50S ribosomal subunit protein L34)
             0.0380 0.0271 EG11231 (rpmI) EG11231-MONOMER (50S ribosomal subunit protein L35)
             0.9628 0.8792 EG11232 (rpmJ) EG11232-MONOMER (50S ribosomal subunit protein L36)
                NIL    NIL EG30084 (rrsA) RRSA-RRNA (16S ribosomal RNA (rrsA))
             0.0412 0.0012 EG10900 (rpsA) EG10900-MONOMER (30S ribosomal subunit protein S1)
             0.3150 0.0544 EG10901 (rpsB) EG10901-MONOMER (30S ribosomal subunit protein S2)
             0.9759 0.8911 EG10902 (rpsC) EG10902-MONOMER (30S ribosomal subunit protein S3)
             0.9749 0.8996 EG10903 (rpsD) EG10903-MONOMER (30S ribosomal subunit protein S4)
             0.9820 0.9406 EG10904 (rpsE) EG10904-MONOMER (30S ribosomal subunit protein S5)
             0.8739 0.7583 EG10905 (rpsF) EG10905-MONOMER (30S ribosomal subunit protein S6)
             0.9797 0.9235 EG10906 (rpsG) EG10906-MONOMER (30S ribosomal subunit protein S7)
             0.9816 0.9332 EG10907 (rpsH) EG10907-MONOMER (30S ribosomal subunit protein S8)
   *in cand* 0.9990 0.9985 EG10908 (rpsI) EG10908-MONOMER (30S ribosomal subunit protein S9)
             0.9801 0.9334 EG10909 (rpsJ) EG10909-MONOMER (30S ribosomal subunit protein S10)
             0.9822 0.9345 EG10910 (rpsK) EG10910-MONOMER (30S ribosomal subunit protein S11)
             0.9775 0.9065 EG10911 (rpsL) EG10911-MONOMER (30S ribosomal subunit protein S12)
             0.9769 0.9080 EG10912 (rpsM) EG10912-MONOMER (30S ribosomal subunit protein S13)
             0.9710 0.9060 EG10913 (rpsN) EG10913-MONOMER (30S ribosomal subunit protein S14)
             0.8116 0.4701 EG10914 (rpsO) EG10914-MONOMER (30S ribosomal subunit protein S15)
             0.2277 0.0026 EG10915 (rpsP) EG10915-MONOMER (30S ribosomal subunit protein S16)
             0.9783 0.9213 EG10916 (rpsQ) EG10916-MONOMER (30S ribosomal subunit protein S17)
             0.8416 0.7105 EG10917 (rpsR) EG10917-MONOMER (30S ribosomal subunit protein S18)
             0.9757 0.9203 EG10918 (rpsS) EG10918-MONOMER (30S ribosomal subunit protein S19)
             0.4572 0.0527 EG10919 (rpsT) EG10919-MONOMER (30S ribosomal subunit protein S20)
             0.7480 0.3953 EG10920 (rpsU) EG10920-MONOMER (30S ribosomal subunit protein S21)
             0.0950 0.0912 EG11508 (sra) EG11508-MONOMER (30S ribosomal subunit protein S22)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9988 EG11652 (degS) EG11652-MONOMER (DegS serine endoprotease)
   *in cand* 0.9993 0.9986 EG12799 (mlaD) EG12799-MONOMER (MlaD)
   *in cand* 0.9994 0.9987 G7657 (yrbA) G7657-MONOMER (predicted DNA-binding transcriptional regulator)
   *in cand* 0.9993 0.9985 G7659 (mlaC) G7659-MONOMER (MlaC)
   *in cand* 0.9992 0.9986 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
   *in cand* 0.9992 0.9985 G7665 (lptA) YHBN-MONOMER (LptA)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10874 EG10908 (centered at EG10874)
G7665 (centered at G7665)
G7663 (centered at G7663)
G7657 (centered at G7657)
EG11652 (centered at EG11652)
EG12799 G7659 (centered at EG12799)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7665   G7663   G7659   G7657   EG12799   EG11652   EG10908   EG10874   
191/623249/623212/623208/623240/623234/623417/623415/623
AAEO224324:0:Tyes210208-----0
AAVE397945:0:Tyes04291591595589-35693570
ABAC204669:0:Tyes-3229---275510
ABAU360910:0:Tyes-14634034333835801
ABOR393595:0:Tyes0245-112322
ABUT367737:0:Tyes-0466--1119--
ACAU438753:0:Tyes-----34110
ACEL351607:0:Tyes-------0
ACRY349163:8:Tyes--50-0-2081-
ADEH290397:0:Tyes-807----0-
AEHR187272:0:Tyes151375802829
AFER243159:0:Tyes48462791382792-10
AHYD196024:0:Tyes2123283027501
ALAI441768:0:Tyes------10
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