CANDIDATE ID: 213

CANDIDATE ID: 213

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9955582e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7570 (ygiS) (b3020)
   Products of gene:
     - YGIS-MONOMER (predicted transporter subunit)

- G6778 (ddpD) (b1484)
   Products of gene:
     - YDDP-MONOMER (YddP)
     - ABC-59-CPLX (YddO/YddP/YddQ/YddR/YddS ABC transporter)

- G6665 (mppA) (b1329)
   Products of gene:
     - G6665-MONOMER (periplasmic murein tripeptide binding protein)
     - CPLX0-3970 (murein tripeptide ABC transporter)
       Reactions:
        ATP + L-Ala-D-Glu-meso-A2pm[periplasmic space] + H2O  ->  L-Ala-D-Glu-meso-A2pm[cytosol] + ADP + phosphate

- EG10678 (oppF) (b1247)
   Products of gene:
     - OPPF-MONOMER (OppF)
     - CPLX0-3970 (murein tripeptide ABC transporter)
       Reactions:
        ATP + L-Ala-D-Glu-meso-A2pm[periplasmic space] + H2O  ->  L-Ala-D-Glu-meso-A2pm[cytosol] + ADP + phosphate
     - ABC-22-CPLX (oligopeptide ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG10677 (oppD) (b1246)
   Products of gene:
     - OPPD-MONOMER (OppD)
     - CPLX0-3970 (murein tripeptide ABC transporter)
       Reactions:
        ATP + L-Ala-D-Glu-meso-A2pm[periplasmic space] + H2O  ->  L-Ala-D-Glu-meso-A2pm[cytosol] + ADP + phosphate
     - ABC-22-CPLX (oligopeptide ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG10676 (oppC) (b1245)
   Products of gene:
     - OPPC-MONOMER (OppC)
     - CPLX0-3970 (murein tripeptide ABC transporter)
       Reactions:
        ATP + L-Ala-D-Glu-meso-A2pm[periplasmic space] + H2O  ->  L-Ala-D-Glu-meso-A2pm[cytosol] + ADP + phosphate
     - ABC-22-CPLX (oligopeptide ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG10675 (oppB) (b1244)
   Products of gene:
     - OPPB-MONOMER (OppB)
     - CPLX0-3970 (murein tripeptide ABC transporter)
       Reactions:
        ATP + L-Ala-D-Glu-meso-A2pm[periplasmic space] + H2O  ->  L-Ala-D-Glu-meso-A2pm[cytosol] + ADP + phosphate
     - ABC-22-CPLX (oligopeptide ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG10674 (oppA) (b1243)
   Products of gene:
     - OPPA-MONOMER (OppA-oligopeptide ABC transporter substrate-binding)
     - ABC-22-CPLX (oligopeptide ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 141
Effective number of orgs (counting one per cluster within 468 clusters): 80

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VFIS312309 ncbi Vibrio fischeri ES1148
VCHO345073 ncbi Vibrio cholerae O3958
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169618
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB48
TSP1755 Thermoanaerobacter sp.8
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332238
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
SSP644076 Silicibacter sp. TrichCH4B8
SSON300269 ncbi Shigella sonnei Ss0468
SPRO399741 ncbi Serratia proteamaculans 5688
SMEL266834 ncbi Sinorhizobium meliloti 10218
SMED366394 ncbi Sinorhizobium medicae WSM4198
SLAC55218 Ruegeria lacuscaerulensis7
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SGLO343509 ncbi Sodalis glossinidius morsitans8
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1978
SBOY300268 ncbi Shigella boydii Sb2278
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170297
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111708
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38418
RETL347834 ncbi Rhizobium etli CFN 428
PSP56811 Psychrobacter sp.8
PSP117 Pirellula sp.7
PPRO298386 ncbi Photobacterium profundum SS98
PMUL272843 ncbi Pasteurella multocida multocida Pm708
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO18
OIHE221109 ncbi Oceanobacillus iheyensis HTE8318
MSP409 Methylobacterium sp.7
MSP400668 ncbi Marinomonas sp. MWYL18
MSP266779 ncbi Chelativorans sp. BNC17
MLOT266835 ncbi Mesorhizobium loti MAFF3030998
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53347
LSPH444177 ncbi Lysinibacillus sphaericus C3-418
LMON265669 ncbi Listeria monocytogenes 4b F23657
LMON169963 ncbi Listeria monocytogenes EGD-e7
LINN272626 ncbi Listeria innocua Clip112627
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
JSP290400 ncbi Jannaschia sp. CCS18
HNEP81032 Hyphomonas neptunium7
HINF71421 ncbi Haemophilus influenzae Rd KW208
HINF374930 ncbi Haemophilus influenzae PittEE8
HINF281310 ncbi Haemophilus influenzae 86-028NP8
HCHE349521 ncbi Hahella chejuensis KCTC 23968
GVIO251221 ncbi Gloeobacter violaceus PCC 74218
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-28
FTUL401614 ncbi Francisella novicida U1127
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DHAF138119 ncbi Desulfitobacterium hafniense Y518
CVIO243365 ncbi Chromobacterium violaceum ATCC 124728
CPHY357809 ncbi Clostridium phytofermentans ISDg7
CNOV386415 ncbi Clostridium novyi NT7
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto8
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6578
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B8
CBOT498213 ncbi Clostridium botulinum B1 str. Okra8
CBOT441772 ncbi Clostridium botulinum F str. Langeland7
CBOT441771 ncbi Clostridium botulinum A str. Hall7
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193977
CBOT36826 Clostridium botulinum A7
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80528
CACE272562 ncbi Clostridium acetobutylicum ATCC 8248
BXEN266265 ncbi Burkholderia xenovorans LB4008
BWEI315730 ncbi Bacillus weihenstephanensis KBAB48
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHU412694 ncbi Bacillus thuringiensis Al Hakam8
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-278
BTHA271848 ncbi Burkholderia thailandensis E2647
BSUI470137 ncbi Brucella suis ATCC 234458
BSUI204722 ncbi Brucella suis 13308
BSUB ncbi Bacillus subtilis subtilis 1688
BSP36773 Burkholderia sp.7
BPUM315750 ncbi Bacillus pumilus SAFR-0328
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BOVI236 Brucella ovis7
BMEL359391 ncbi Brucella melitensis biovar Abortus 23088
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M8
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BLIC279010 ncbi Bacillus licheniformis ATCC 145808
BCLA66692 ncbi Bacillus clausii KSM-K168
BCER572264 ncbi Bacillus cereus 03BB1028
BCER405917 Bacillus cereus W8
BCER315749 ncbi Bacillus cytotoxicus NVH 391-988
BCER288681 ncbi Bacillus cereus E33L8
BCER226900 ncbi Bacillus cereus ATCC 145798
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BCAN483179 ncbi Brucella canis ATCC 233658
BANT592021 ncbi Bacillus anthracis A02488
BANT568206 ncbi Bacillus anthracis CDC 6848
BANT261594 ncbi Bacillus anthracis Ames Ancestor8
BANT260799 ncbi Bacillus anthracis Sterne8
BAMY326423 ncbi Bacillus amyloliquefaciens FZB428
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9418
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4498
AHYD196024 Aeromonas hydrophila dhakensis8


Names of the homologs of the genes in the group in each of these orgs
  G7570   G6778   G6665   EG10678   EG10677   EG10676   EG10675   EG10674   
YPSE349747 YPSIP31758_1960YPSIP31758_1957YPSIP31758_1798YPSIP31758_1956YPSIP31758_1957YPSIP31758_1958YPSIP31758_1959YPSIP31758_1960
YPSE273123 YPTB2105YPTB2108YPTB2258YPTB2109YPTB2108YPTB2107YPTB2106YPTB2258
YPES386656 YPDSF_0954YPDSF_0951YPDSF_0806YPDSF_0950YPDSF_0951YPDSF_0952YPDSF_0953YPDSF_0954
YPES377628 YPN_1648YPN_1651YPN_1799YPN_1652YPN_1651YPN_1650YPN_1649YPN_1799
YPES360102 YPA_1539YPA_1542YPA_1688YPA_1543YPA_1542YPA_1541YPA_1540YPA_1688
YPES349746 YPANGOLA_A2163YPANGOLA_A2160YPANGOLA_A2389YPANGOLA_A2159YPANGOLA_A2160YPANGOLA_A2161YPANGOLA_A2162YPANGOLA_A2163
YPES214092 YPO2182YPO2185YPO2339YPO2186YPO2185YPO2184YPO2183YPO2339
YPES187410 Y2026Y2029Y1993Y2030Y2029Y2028Y2027Y2026
YENT393305 YE2233YE2230YE2233YE2229YE2230YE2231YE2232YE2234
VVUL216895 VV1_3082VV1_3079VV1_3082VV1_3078VV1_3079VV1_3080VV1_3081VV1_3082
VVUL196600 VV1203VV1206VV1203VV1207VV1206VV1205VV1204VV1203
VPAR223926 VP2091VP2088VP2091VP2087VP2088VP2089VP2090VP2091
VFIS312309 VF1597VF1594VF1597VF1593VF1594VF1595VF1596VF1597
VCHO345073 VC0395_A0609VC0395_A0612VC0395_A0609VC0395_A0613VC0395_A0612VC0395_A0611VC0395_A0610VC0395_A0609
VCHO VC1091VC1094VC1091VC1095VC1094VC1093VC1092VC1091
TTEN273068 TTE0609TTE2525TTE1552TTE0615TTE0614TTE0613TTE0612TTE0609
TSP1755 TETH514_0623TETH514_0620TETH514_0623TETH514_0550TETH514_0620TETH514_0621TETH514_0622TETH514_0623
TPSE340099 TETH39_1689TETH39_0199TETH39_1689TETH39_1685TETH39_1686TETH39_1687TETH39_1688TETH39_1689
STYP99287 STM1746STM1743STM1679STM1742STM1743STM1744STM1745STM1746
SSP644076 SCH4B_3698SCH4B_3701SCH4B_3698SCH4B_3702SCH4B_3701SCH4B_3700SCH4B_3699SCH4B_3698
SSON300269 SSO_1937SSO_1640SSO_1804SSO_1933SSO_1934SSO_1935SSO_1936SSO_1937
SPRO399741 SPRO_2701SPRO_2350SPRO_2701SPRO_2697SPRO_2698SPRO_2699SPRO_2700SPRO_2702
SMEL266834 SMB21196SMC02423SMB21196SMA2079SMC03125SMB21198SMB21197SMB21196
SMED366394 SMED_4685SMED_5789SMED_4685SMED_5658SMED_2856SMED_4687SMED_4686SMED_4685
SLAC55218 SL1157_A0134SL1157_A0134SL1157_A0137SL1157_A0137SL1157_A0136SL1157_A0135SL1157_A0134
SHIGELLA OPPAS1874S1424OPPFOPPDOPPCOPPBS1424
SGLO343509 SG1373SG1376SG1497SG1377SG1376SG1375SG1374SG1373
SFLE373384 SFV_1255SFV_1737SFV_1831SFV_1259SFV_1258SFV_1257SFV_1256SFV_1255
SFLE198214 AAN42857.1AAN43313.1AAN43403.1AAN42861.1AAN42860.1AAN42859.1AAN42858.1AAN43403.1
SENT454169 SEHA_C1937SEHA_C1934SEHA_C1865SEHA_C1933SEHA_C1934SEHA_C1935SEHA_C1936SEHA_C1937
SENT321314 SCH_1742SCH_1739SCH_1672SCH_1738SCH_1739SCH_1740SCH_1741SCH_1742
SENT295319 SPA1131SPA1134SPA1205SPA1135SPA1134SPA1133SPA1132SPA1205
SENT220341 STY1304STY1308STY1384STY1309STY1308STY0890STY1305STY1304
SENT209261 T1658T1655T1583T1654T1655T2038T1657T1658
SDYS300267 SDY_3217SDY_1304SDY_1409SDY_1305SDY_1304SDY_1303SDY_1302SDY_1409
SBOY300268 SBO_1824SBO_1573SBO_1824SBO_1820SBO_1821SBO_1822SBO_1823SBO_1824
RSPH349101 RSPH17029_0132RSPH17029_4157RSPH17029_0132RSPH17029_4158RSPH17029_0130RSPH17029_0131RSPH17029_0132
RRUB269796 RRU_A0592RRU_A0589RRU_A0592RRU_A0588RRU_A0589RRU_A0590RRU_A0591RRU_A0592
RLEG216596 RL3543PRL120430RL3543RL3547RL3546RL3545RL3544RL3543
RETL347834 RHE_CH03096RHE_CH00605RHE_CH03096RHE_CH03100RHE_CH03099RHE_CH03098RHE_CH03097RHE_CH03096
PSP56811 PSYCPRWF_0021PSYCPRWF_0024PSYCPRWF_0019PSYCPRWF_0025PSYCPRWF_0024PSYCPRWF_0023PSYCPRWF_0022PSYCPRWF_0021
PSP117 RB12862RB12862RB12858RB12859RB12860RB12861RB12862
PPRO298386 PBPRA2014PBPRA1134PBPRA1131PBPRA1135PBPRA1134PBPRA1133PBPRA1132PBPRA2014
PMUL272843 PM1910PM1907PM1910PM1906PM1907PM1908PM1909PM1910
PLUM243265 PLU2493PLU2490PLU2578PLU2489PLU2490PLU2491PLU2492PLU2494
OIHE221109 OB2967OB2453OB2967OB2963OB2968OB2969OB2970OB2967
MSP409 M446_5343M446_5343M446_3923M446_2850M446_5345M446_5344M446_5343
MSP400668 MMWYL1_4404MMWYL1_3821MMWYL1_4404MMWYL1_4408MMWYL1_4407MMWYL1_4406MMWYL1_4405MMWYL1_4404
MSP266779 MESO_0038MESO_3727MESO_0038MESO_3135MESO_0036MESO_0037MESO_0038
MLOT266835 MLR7597MLR6674MLR7597MLL0595MLL0596MLR7599MLR7598MLR7597
LWEL386043 LWE2213LWE2210LWE2213LWE2210LWE2211LWE2212LWE2213
LSPH444177 BSPH_1480BSPH_4261BSPH_1480BSPH_2217BSPH_4261BSPH_1478BSPH_1479BSPH_1480
LMON265669 LMOF2365_2229LMOF2365_2226LMOF2365_2229LMOF2365_2226LMOF2365_2227LMOF2365_2228LMOF2365_2229
LMON169963 LMO2196LMO2193LMO2196LMO2193LMO2194LMO2195LMO2196
LINN272626 LIN2300LIN2297LIN2300LIN2297LIN2298LIN2299LIN2300
KPNE272620 GKPORF_B5432GKPORF_B1131GKPORF_B1333GKPORF_B1329GKPORF_B1330GKPORF_B1331GKPORF_B1332GKPORF_B1333
JSP290400 JANN_3050JANN_4131JANN_3050JANN_3054JANN_3053JANN_3052JANN_3051JANN_3050
HNEP81032 HNE_2874HNE_2874HNE_0172HNE_0172HNE_2880HNE_2879HNE_2874
HINF71421 HI_1124HI_1121HI_1124HI_1120HI_1121HI_1122HI_1123HI_1124
HINF374930 CGSHIEE_06425CGSHIEE_06440CGSHIEE_06425CGSHIEE_06445CGSHIEE_06440CGSHIEE_06435CGSHIEE_06430CGSHIEE_06425
HINF281310 NTHI1292NTHI1287NTHI1292NTHI1286NTHI1287NTHI1288NTHI1289NTHI1292
HCHE349521 HCH_01127HCH_00011HCH_03127HCH_00699HCH_01130HCH_00701HCH_01128HCH_01127
GVIO251221 GLL0948GLL4123GLL4126GLL4122GLL4123GLL4124GLL4125GLL4126
GTHE420246 GTNG_0691GTNG_0476GTNG_0691GTNG_0477GTNG_3282GTNG_0693GTNG_0692GTNG_0691
FTUL401614 FTN_1593FTN_1593FTN_1589FTN_1590FTN_1591FTN_1592FTN_1593
ESP42895 ENT638_1483ENT638_2299ENT638_2302ENT638_2298ENT638_2299ENT638_2300ENT638_2301ENT638_2302
EFER585054 EFER_1712EFER_1709EFER_1712EFER_1708EFER_1709EFER_1710EFER_1711EFER_1712
ECOO157 Z4374Z2226Z2438OPPFOPPDOPPCOPPBZ2438
ECOL83334 ECS3904ECS2088ECS1911ECS1747ECS1746ECS1745ECS1744ECS1911
ECOL585397 ECED1_3679ECED1_1398ECED1_1540ECED1_1399ECED1_1398ECED1_1397ECED1_1396ECED1_1540
ECOL585057 ECIAI39_3514ECIAI39_1748ECIAI39_1679ECIAI39_1582ECIAI39_1581ECIAI39_1580ECIAI39_1579ECIAI39_1679
ECOL585056 ECUMN_3504ECUMN_1738ECUMN_1625ECUMN_1544ECUMN_1543ECUMN_1542ECUMN_1541ECUMN_1540
ECOL585055 EC55989_1340EC55989_1616EC55989_1494EC55989_1344EC55989_1343EC55989_1342EC55989_1341EC55989_1494
ECOL585035 ECS88_3408ECS88_1314ECS88_1472ECS88_1315ECS88_1314ECS88_1313ECS88_1312ECS88_1472
ECOL585034 ECIAI1_1262ECIAI1_1494ECIAI1_1358ECIAI1_1266ECIAI1_1265ECIAI1_1264ECIAI1_1263ECIAI1_1358
ECOL481805 ECOLC_0677ECOLC_2173ECOLC_2385ECOLC_2381ECOLC_2382ECOLC_2383ECOLC_2384ECOLC_2385
ECOL469008 ECBD_0719ECBD_2155ECBD_2379ECBD_2375ECBD_2376ECBD_2377ECBD_2378ECBD_2379
ECOL439855 ECSMS35_3311ECSMS35_1689ECSMS35_1897ECSMS35_1893ECSMS35_1894ECSMS35_1895ECSMS35_1896ECSMS35_1897
ECOL413997 ECB_02892ECB_01442ECB_01307ECB_01221ECB_01220ECB_01219ECB_01218ECB_01307
ECOL409438 ECSE_1291ECSE_1574ECSE_1384ECSE_1295ECSE_1294ECSE_1293ECSE_1292ECSE_1384
ECOL405955 APECO1_3399APECO1_361APECO1_483APECO1_362APECO1_361APECO1_360APECO1_359APECO1_483
ECOL364106 UTI89_C3447UTI89_C1444UTI89_C1601UTI89_C1445UTI89_C1444UTI89_C1443UTI89_C1442UTI89_C1601
ECOL362663 ECP_3109ECP_1293ECP_1290ECP_1294ECP_1293ECP_1292ECP_1291ECP_1290
ECOL331111 ECE24377A_1391ECE24377A_1673ECE24377A_1542ECE24377A_1395ECE24377A_1394ECE24377A_1393ECE24377A_1392ECE24377A_1542
ECOL316407 ECK3011:JW2988:B3020ECK1478:JW1479:B1484ECK1326:JW1322:B1329ECK1241:JW1239:B1247ECK1240:JW1238:B1246ECK1239:JW1237:B1245ECK1238:JW1236:B1244ECK1326:JW1322:B1329
ECOL199310 C3761C1710C1803C1711C1710C1709C1708C1803
ECAR218491 ECA1942ECA2321ECA1992ECA2320ECA2321ECA2322ECA2323ECA2325
DHAF138119 DSY1861DSY0646DSY1861DSY0506DSY1863DSY1864DSY1865DSY1861
CVIO243365 CV_4329CV_4326CV_4329CV_4325CV_4326CV_4327CV_4328CV_4329
CPHY357809 CPHY_2000CPHY_2000CPHY_0809CPHY_1998CPHY_1997CPHY_1996CPHY_2000
CNOV386415 NT01CX_2054NT01CX_1743NT01CX_2054NT01CX_1744NT01CX_1743NT01CX_1742NT01CX_1741
CBOT536232 CLM_3563CLM_3560CLM_3563CLM_3559CLM_3560CLM_3561CLM_3562CLM_3563
CBOT515621 CLJ_B3422CLJ_B3419CLJ_B3422CLJ_B3418CLJ_B3419CLJ_B3420CLJ_B3421CLJ_B3422
CBOT508765 CLL_A2488CLL_A2490CLL_A2488CLL_A2489CLL_A2490CLL_A2491CLL_A2492CLL_A2494
CBOT498213 CLD_1386CLD_1389CLD_1386CLD_1390CLD_1389CLD_1388CLD_1387CLD_1386
CBOT441772 CLI_3212CLI_3215CLI_3211CLI_3212CLI_3213CLI_3214CLI_3215
CBOT441771 CLC_3060CLC_3057CLC_3060CLC_3056CLC_3057CLC_3058CLC_3059
CBOT441770 CLB_3185CLB_3182CLB_3185CLB_3181CLB_3182CLB_3183CLB_3184
CBOT36826 CBO3150CBO3147CBO3150CBO3146CBO3147CBO3148CBO3149
CBEI290402 CBEI_4928CBEI_4930CBEI_4928CBEI_4929CBEI_4930CBEI_4931CBEI_4932CBEI_4928
CACE272562 CAC3634CAC3636CAC3634CAC3635CAC3636CAC3643CAC3644CAC3634
BXEN266265 BXE_B0757BXE_B0754BXE_B0757BXE_B0753BXE_B0754BXE_B0755BXE_B0756BXE_B0757
BWEI315730 BCERKBAB4_0174BCERKBAB4_0806BCERKBAB4_0174BCERKBAB4_0807BCERKBAB4_1092BCERKBAB4_1091BCERKBAB4_0170BCERKBAB4_3271
BVIE269482 BCEP1808_3706BCEP1808_3706BCEP1808_3702BCEP1808_3703BCEP1808_3704BCEP1808_3705BCEP1808_3706
BTHU412694 BALH_0188BALH_0819BALH_0188BALH_0223BALH_1045BALH_1044BALH_0184BALH_3223
BTHU281309 BT9727_0177BT9727_4234BT9727_3340BT9727_4235BT9727_1086BT9727_1085BT9727_0173BT9727_3344
BTHA271848 BTH_II2219BTH_II2219BTH_II2215BTH_II2216BTH_II2217BTH_II2218BTH_II2219
BSUI470137 BSUIS_B0533BSUIS_B0408BSUIS_B0533BSUIS_B0407BSUIS_B1075BSUIS_B0531BSUIS_B0532BSUIS_B0533
BSUI204722 BR_A0537BR_A0405BR_A0537BR_A0404BR_A1079BR_A0535BR_A0536BR_A0537
BSUB BSU11430BSU12950BSU11430BSU13000BSU12950BSU11450BSU11440BSU11430
BSP36773 BCEP18194_B0115BCEP18194_B0115BCEP18194_B0119BCEP18194_B0118BCEP18194_B0117BCEP18194_B0116BCEP18194_B0115
BPUM315750 BPUM_1188BPUM_1187BPUM_1188BPUM_1192BPUM_1187BPUM_1186BPUM_1185BPUM_1188
BPSE320373 BURPS668_A3019BURPS668_A3019BURPS668_A3015BURPS668_A3016BURPS668_A3017BURPS668_A3018BURPS668_A3019
BPSE320372 BURPS1710B_B1484BURPS1710B_B1484BURPS1710B_B1480BURPS1710B_B1481BURPS1710B_B1482BURPS1710B_B1483BURPS1710B_B1484
BPSE272560 BPSS2141BPSS2141BPSS2137BPSS2138BPSS2139BPSS2140BPSS2141
BOVI236 GBOORFA0517GBOORFA0389GBOORFA0517GBOORFA0388GBOORFA0515GBOORFA0516GBOORFA0517
BMEL359391 BAB2_0700BAB2_0817BAB2_0700BAB2_1037BAB2_1038BAB2_0702BAB2_0701BAB2_0700
BMEL224914 BMEII0735BMEII0863BMEII0735BMEII0864BMEII0222BMEII0737BMEII0736BMEII0735
BMAL320389 BMA10247_A0385BMA10247_A0385BMA10247_A0389BMA10247_A0388BMA10247_A0387BMA10247_A0386BMA10247_A0385
BMAL320388 BMASAVP1_1534BMASAVP1_1534BMASAVP1_1538BMASAVP1_1537BMASAVP1_1536BMASAVP1_1535BMASAVP1_1534
BMAL243160 BMA_A0351BMA_A0351BMA_A0354.1BMA_A0354BMA_A0353BMA_A0352BMA_A0351
BLIC279010 BL03323BL03769BL03323BL03763BL03769BL03325BL03324BL03323
BCLA66692 ABC0780ABC1238ABC0780ABC3657ABC0567ABC0778ABC0777ABC0780
BCER572264 BCA_0233BCA_0958BCA_0233BCA_0273BCA_1226BCA_1225BCA_0229BCA_3678
BCER405917 BCE_0209BCE_1003BCE_0209BCE_0252BCE_1303BCE_1302BCE_0205BCE_0215
BCER315749 BCER98_0190BCER98_0222BCER98_2242BCER98_0223BCER98_0899BCER98_0898BCER98_0186BCER98_1532
BCER288681 BCE33L0180BCE33L0810BCE33L3293BCE33L4247BCE33L1080BCE33L1079BCE33L0176BCE33L3292
BCER226900 BC_0211BC_0910BC_0211BC_0245BC_1182BC_1181BC_0207BC_0216
BCEN331272 BCEN2424_5542BCEN2424_5542BCEN2424_5538BCEN2424_5539BCEN2424_5540BCEN2424_5541BCEN2424_5542
BCEN331271 BCEN_5318BCEN_5318BCEN_5322BCEN_5321BCEN_5320BCEN_5319BCEN_5318
BCAN483179 BCAN_B0537BCAN_B0408BCAN_B0537BCAN_B0407BCAN_B1102BCAN_B0535BCAN_B0536BCAN_B0537
BANT592021 BAA_0222BAA_0261BAA_0222BAA_4750BAA_1270BAA_1269BAA_0218BAA_3670
BANT568206 BAMEG_0222BAMEG_0260BAMEG_0222BAMEG_4769BAMEG_3394BAMEG_3395BAMEG_0218BAMEG_0990
BANT261594 GBAA0189GBAA0234GBAA0189GBAA4734GBAA1194GBAA1193GBAA0185GBAA3644
BANT260799 BAS0190BAS0221BAS0190BAS4394BAS1104BAS1103BAS0186BAS3378
BAMY326423 RBAM_011430RBAM_011460RBAM_011430RBAM_011370RBAM_012800RBAM_011450RBAM_011440RBAM_011430
BAMB398577 BAMMC406_5413BAMMC406_5413BAMMC406_5409BAMMC406_5410BAMMC406_5411BAMMC406_5412BAMMC406_5413
BAMB339670 BAMB_4866BAMB_4866BAMB_4862BAMB_4863BAMB_4864BAMB_4865BAMB_4866
BABO262698 BRUAB2_0685BRUAB2_0796BRUAB2_0685BRUAB2_1018BRUAB2_1019BRUAB2_0687BRUAB2_0686BRUAB2_0685
ASAL382245 ASA_1879ASA_1701ASA_3625ASA_1702ASA_1701ASA_1700ASA_1699ASA_3625
AHYD196024 AHA_2001AHA_2610AHA_2613AHA_2609AHA_2610AHA_2611AHA_2612AHA_2613


Organism features enriched in list (features available for 127 out of the 141 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00152123192
Arrangment:Pairs 3.593e-643112
Arrangment:Singles 0.001836276286
Disease:Anthrax 0.002169344
Disease:Botulism 0.000460855
Disease:Brucellosis 0.000460855
Disease:Bubonic_plague 0.000097366
Disease:Dysentery 0.000097366
Disease:Gastroenteritis 0.00002601013
Endospores:No 3.472e-821211
Endospores:Yes 7.939e-103153
GC_Content_Range4:0-40 0.004798335213
GC_Content_Range4:40-60 0.000038168224
GC_Content_Range7:30-40 0.006632126166
GC_Content_Range7:50-60 2.435e-642107
Genome_Size_Range5:0-2 1.465e-144155
Genome_Size_Range5:2-4 7.471e-721197
Genome_Size_Range5:4-6 5.422e-2185184
Genome_Size_Range5:6-10 0.00798991747
Genome_Size_Range9:1-2 4.523e-114128
Genome_Size_Range9:2-3 1.384e-77120
Genome_Size_Range9:4-5 4.428e-114796
Genome_Size_Range9:5-6 4.921e-73888
Genome_Size_Range9:6-8 0.00529751538
Gram_Stain:Gram_Neg 0.000554688333
Habitat:Aquatic 0.0008191991
Habitat:Multiple 0.000210255178
Habitat:Specialized 0.0086544553
Habitat:Terrestrial 0.00012911631
Motility:No 3.125e-108151
Motility:Yes 7.928e-1190267
Oxygen_Req:Aerobic 0.000623326185
Oxygen_Req:Anaerobic 0.004766613102
Oxygen_Req:Facultative 2.045e-1176201
Pathogenic_in:Animal 0.00172312466
Pathogenic_in:Human 2.890e-873213
Pathogenic_in:No 3.693e-628226
Shape:Coccus 1.133e-7282
Shape:Rod 4.769e-21118347
Shape:Spiral 0.0018167134
Temp._range:Mesophilic 6.230e-6119473
Temp._range:Thermophilic 0.0072966235



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 322
Effective number of orgs (counting one per cluster within 468 clusters): 257

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP292414 ncbi Ruegeria sp. TM10401
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SLOI323850 ncbi Shewanella loihica PV-40
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SELO269084 ncbi Synechococcus elongatus PCC 63011
SDEN318161 ncbi Shewanella denitrificans OS2170
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30001
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PRUM264731 ncbi Prevotella ruminicola 230
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMEN399739 ncbi Pseudomonas mendocina ymp1
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT31
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PFLU205922 ncbi Pseudomonas fluorescens Pf0-11
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO11
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA141
PAER178306 ncbi Pyrobaculum aerophilum IM20
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM11
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LCHO395495 ncbi Leptothrix cholodnii SP-60
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
JSP375286 ncbi Janthinobacterium sp. Marseille1
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans1
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GOXY290633 ncbi Gluconobacter oxydans 621H1
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI30
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DARO159087 ncbi Dechloromonas aromatica RCB1
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/31
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHEN283166 ncbi Bartonella henselae Houston-10
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL031
APLE416269 ncbi Actinobacillus pleuropneumoniae L201
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K11
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAVE397945 ncbi Acidovorax citrulli AAC00-11
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7570   G6778   G6665   EG10678   EG10677   EG10676   EG10675   EG10674   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TPAL243276
TKOD69014 TK1801
TFUS269800 TFU_1630
TERY203124
TELO197221 TLR1151
TDEN326298
TDEN292415
TCRU317025
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP94122
SSP84588
SSP64471
SSP321332 CYB_1186
SSP321327 CYA_0051
SSP292414 TM1040_3115
SSP1148 SLL0833
SSP1131
SSOL273057
SSED425104
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579
SONE211586
SLOI323850
SHAL458817
SGOR29390
SFUM335543 SFUM_3545
SELO269084 SYC1073_D
SDEN318161
SBAL402882
SBAL399599
SALA317655
SACI330779
RTYP257363
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL316055
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSYR223283 PSPTO_2573
PSTU379731
PSP312153
PRUM264731
PNAP365044
PMEN399739 PMEN_0837
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616
PINT246198
PING357804
PHOR70601 PH1959
PHAL326442
PGIN242619
PFUR186497 PF0193
PFLU205922 PFL_0809
PDIS435591
PCRY335284
PCAR338963 PCAR_0906
PATL342610
PAST100379
PARS340102
PARC259536
PAER208964 PA4506
PAER208963 PA14_58490
PAER178306
OTSU357244
NWIN323098
NSP387092
NSP103690 ALR1556
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156 NFA1670
NEUT335283
NEUR228410
NARO279238
MTUB419947 MRA_1290
MTUB336982 TBFG_11308
MTHE349307
MTHE264732
MTHE187420
MTBRV RV1282C
MTBCDC MT1319
MSYN262723
MSTA339860
MSP189918 MKMS_4003
MSP164757 MJLS_3944
MSP164756 MMCS_3929
MSED399549
MPUL272635
MPNE272634
MPET420662 MPE_A3118
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM3321
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108
MLEP272631 ML1123
MLAB410358 MLAB_0719
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_0216
MGIL350054 MFLV_2260
MGEN243273
MFLO265311
MFLA265072 MFLA_1485
MCAP340047
MCAP243233
MBUR259564
MBOV410289 BCG_1341C
MBOV233413 MB1313C
MAVI243243 MAV_1432
MART243272
MAER449447
MAEO419665
MABS561007 MAB_0427
LXYL281090
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LJOH257314
LINT363253 LI0250
LINT267671
LINT189518
LGAS324831
LCHO395495
LBOR355277
LBOR355276
LBIF456481
LBIF355278
JSP375286 MMA_3519
ILOI283942
IHOS453591
HWAL362976 HQ2478A
HSP64091 VNG2526G
HSOM205914
HSAL478009 OE4550F
HPYL85963
HPYL357544
HPY
HMOD498761
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HARS204773 HEAR3291
HACI382638
GOXY290633 GOX0656
GFOR411154
GBET391165
FTUL458234 FTA_1745
FTUL393011
FSUC59374
FSP1855 FRANEAN1_3460
FSP106370
FJOH376686
FALN326424 FRAAL2819
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DSHI398580 DSHI_0884
DPSY177439
DETH243164
DARO159087 DARO_1319
CVES412965
CTRA471473
CTRA471472
CTET212717
CSUL444179
CSP78
CRUT413404
CPSY167879
CPNE182082 CPB0202
CPNE138677 CPJ0199
CPNE115713 CPN0199
CPNE115711 CP_0568
CPEL335992
CMUR243161
CMIC443906 CMM_2183
CMIC31964
CMET456442
CMAQ397948
CKLU431943 CKL_1314
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202 CF0402
CEFF196164
CDIP257309
CCUR360105
CCON360104
CCAV227941 CCA_00602
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO
CABO218497 CAB575
BTRI382640
BTHE226186
BSP107806
BQUI283165
BLON206672
BHEN283166
BFRA295405
BFRA272559
BCIC186490
BBAC360095
BAPH372461
BAPH198804
AYEL322098
AVAR240292 AVA_4163
AURANTIMONAS
ASP62977
ASP62928
APLE434271 APJL_0068
APLE416269 APL_0068
APHA212042
APER272557 APE1402
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACRY349163
ABUT367737
ABOR393595
AAVE397945 AAVE_0938
AAUR290340 AAUR_3876
AAEO224324


Organism features enriched in list (features available for 306 out of the 322 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00982843992
Arrangment:Pairs 2.819e-833112
Disease:Pharyngitis 0.005511988
Disease:Wide_range_of_infections 0.00076351111
Disease:bronchitis_and_pneumonitis 0.005511988
Endospores:No 0.0000418133211
Endospores:Yes 4.685e-10753
GC_Content_Range4:0-40 0.0034526126213
GC_Content_Range4:60-100 0.005199964145
GC_Content_Range7:30-40 0.009991398166
GC_Content_Range7:50-60 0.004952345107
GC_Content_Range7:60-70 0.004135058134
Genome_Size_Range5:0-2 5.350e-18126155
Genome_Size_Range5:4-6 2.806e-1258184
Genome_Size_Range5:6-10 0.00020821347
Genome_Size_Range9:0-1 0.00004332427
Genome_Size_Range9:1-2 6.006e-13102128
Genome_Size_Range9:4-5 2.536e-63096
Genome_Size_Range9:5-6 0.00001232888
Genome_Size_Range9:6-8 0.00384381238
Gram_Stain:Gram_Pos 6.863e-656150
Habitat:Aquatic 0.00178536091
Habitat:Host-associated 0.0005591126206
Habitat:Multiple 9.793e-670178
Habitat:Terrestrial 0.0000899631
Motility:No 0.006383391151
Motility:Yes 0.0001361119267
Optimal_temp.:- 0.0086449147257
Optimal_temp.:25-35 0.0030398214
Oxygen_Req:Aerobic 0.0033085111185
Oxygen_Req:Facultative 2.425e-972201
Pathogenic_in:Human 0.004106398213
Shape:Irregular_coccus 0.00813111417
Shape:Rod 4.339e-10146347
Shape:Sphere 0.00006671819
Shape:Spiral 0.00061612734
Temp._range:Mesophilic 0.0000958231473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 8
Effective number of orgs (counting one per cluster within 468 clusters): 7

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
BGAR290434 ncbi Borrelia garinii PBi 0.00468172245
BXEN266265 ncbi Burkholderia xenovorans LB400 0.005000111328
BAFZ390236 ncbi Borrelia afzelii PKo 0.00522112295
BBUR224326 ncbi Borrelia burgdorferi B31 0.00556762325
BHER314723 ncbi Borrelia hermsii DAH 0.00658132405
GVIO251221 ncbi Gloeobacter violaceus PCC 7421 0.007267311868
BTUR314724 ncbi Borrelia turicatae 91E135 0.00728542455
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 33223 0.007931611998


Names of the homologs of the genes in the group in each of these orgs
  G7570   G6778   G6665   EG10678   EG10677   EG10676   EG10675   EG10674   
BGAR290434 BGB15BG0330BG0333BG0332BG0330
BXEN266265 BXE_B0757BXE_B0754BXE_B0757BXE_B0753BXE_B0754BXE_B0755BXE_B0756BXE_B0757
BAFZ390236 BAPKO_5014BAPKO_0338BAPKO_0341BAPKO_0340BAPKO_0338
BBUR224326 BB_B16BB_0329BB_0333BB_0332BB_0329
BHER314723 BH0329BH0329BH0333BH0332BH0329
GVIO251221 GLL0948GLL4123GLL4126GLL4122GLL4123GLL4124GLL4125GLL4126
BTUR314724 BT0329BT0329BT0333BT0332BT0329
TPSE340099 TETH39_1689TETH39_0199TETH39_1689TETH39_1685TETH39_1686TETH39_1687TETH39_1688TETH39_1689


Organism features enriched in list (features available for 8 out of the 8 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Lyme_disease 0.000165022
Disease:Tick-borne_relapsing_fever 0.000165022
GC_Content_Range7:0-30 0.0001241547
Genome_Size_Range9:0-1 0.0040328327
Shape:Spiral 0.0000242534



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73620.5424
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121820.5296
PWY-6374 (vibriobactin biosynthesis)77610.5078
GLUTAMINDEG-PWY (glutamine degradation I)1911000.4723
PWY-6196 (serine racemization)102670.4552
RIBOKIN-PWY (ribose degradation)2791190.4309
SORBDEG-PWY (sorbitol degradation II)53430.4263
SERDEG-PWY (L-serine degradation)3491330.4174
GLUTDEG-PWY (glutamate degradation II)194940.4150
GLUAMCAT-PWY (N-acetylglucosamine degradation I)3561330.4064
GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)208970.4061
GALACTCAT-PWY (D-galactonate degradation)104630.4059
PWY-5901 (2,3-dihydroxybenzoate biosynthesis)185900.4041



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6778   G6665   EG10678   EG10677   EG10676   EG10675   EG10674   
G75700.999060.9997290.9993270.999490.9996890.9997780.999733
G67780.999080.999640.9997420.9994150.999390.999036
G66650.9992960.9994090.9996670.9997420.999764
EG106780.9998430.999570.999610.999353
EG106770.999730.9996940.99946
EG106760.9998660.999688
EG106750.999762
EG10674



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PAIRWISE BLAST SCORES:

  G7570   G6778   G6665   EG10678   EG10677   EG10676   EG10675   EG10674   
G75700.0f0-1.1e-106----8.3e-118
G6778-0.0f0--9.6e-69---
G66656.3e-104-0.0f0----0
EG10678---0.0f0----
EG10677----0.0f0---
EG10676-----0.0f0--
EG10675------0.0f0-
EG106742.0e-116-0----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-3970 (murein tripeptide ABC transporter) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.625, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9991 G6665 (mppA) G6665-MONOMER (periplasmic murein tripeptide binding protein)
   *in cand* 0.9996 0.9993 EG10678 (oppF) OPPF-MONOMER (OppF)
   *in cand* 0.9997 0.9994 EG10677 (oppD) OPPD-MONOMER (OppD)
   *in cand* 0.9997 0.9994 EG10676 (oppC) OPPC-MONOMER (OppC)
   *in cand* 0.9997 0.9994 EG10675 (oppB) OPPB-MONOMER (OppB)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9990 EG10674 (oppA) OPPA-MONOMER (OppA-oligopeptide ABC transporter substrate-binding)
   *in cand* 0.9994 0.9990 G6778 (ddpD) YDDP-MONOMER (YddP)
   *in cand* 0.9996 0.9991 G7570 (ygiS) YGIS-MONOMER (predicted transporter subunit)

- ABC-22-CPLX (oligopeptide ABC transporter) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.625, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9990 EG10674 (oppA) OPPA-MONOMER (OppA-oligopeptide ABC transporter substrate-binding)
   *in cand* 0.9997 0.9994 EG10675 (oppB) OPPB-MONOMER (OppB)
   *in cand* 0.9996 0.9993 EG10678 (oppF) OPPF-MONOMER (OppF)
   *in cand* 0.9997 0.9994 EG10677 (oppD) OPPD-MONOMER (OppD)
   *in cand* 0.9997 0.9994 EG10676 (oppC) OPPC-MONOMER (OppC)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9991 G6665 (mppA) G6665-MONOMER (periplasmic murein tripeptide binding protein)
   *in cand* 0.9994 0.9990 G6778 (ddpD) YDDP-MONOMER (YddP)
   *in cand* 0.9996 0.9991 G7570 (ygiS) YGIS-MONOMER (predicted transporter subunit)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10674 EG10675 EG10676 EG10677 EG10678 (centered at EG10676)
G7570 (centered at G7570)
G6778 (centered at G6778)
G6665 (centered at G6665)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7570   G6778   G6665   EG10678   EG10677   EG10676   EG10675   EG10674   
181/623212/623168/623249/623269/623256/623263/623164/623
AAUR290340:2:Tyes----0---
AAVE397945:0:Tyes-0------
ABAC204669:0:Tyes----0-3468-
ABAU360910:0:Tyes-1808-0568163647-
ACAU438753:0:Tyes-2160-1254122601322-
ACEL351607:0:Tyes---210--
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