CANDIDATE ID: 219

CANDIDATE ID: 219

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9946511e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:   5.8750000e-15

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7912 (yjhI) (b4299)
   Products of gene:
     - G7912-MONOMER (KpLE2 phage-like element; predicted DNA-binding transcriptional regulator)

- G7161 (yfaX) (b2248)
   Products of gene:
     - G7161-MONOMER (predicted DNA-binding transcriptional regulator)

- G7003 (kdgR) (b1827)
   Products of gene:
     - G7003-MONOMER (KdgR transcriptional repressor)
       Regulatees:
        TU25 (eda)

- G6276 (allR) (b0506)
   Products of gene:
     - G6276-MONOMER (AllR transcriptional repressor)
       Regulatees:
        TU0-7603 (gcl-hyi-glxR-ybbVW-allB-ybbY-glxK)
        TU0-7602 (allS)
        TU0-7601 (allA)
     - MONOMER0-2201 (AllR-glyox)

- G6201 (mhpR) (b0346)
   Products of gene:
     - G6201-MONOMER (MhpR transcriptional activator)
     - MONOMER0-1441 (MhpR-3HPP DNA binding transcriptional activator)
       Regulatees:
        TU0-2402 (mhpABCDFE)

- G6144 (yagI) (b0272)
   Products of gene:
     - G6144-MONOMER (CP4-6 prophage; predicted DNA-binding transcriptional regulator)

- EG12278 (yiaJ) (b3574)
   Products of gene:
     - EG12278-MONOMER (YiaJ transcriptional repressor)
       Regulatees:
        TU368 (yiaJ)
        TU592 (yiaKLMNO-lyx-sgbHUE)

- EG10491 (iclR) (b4018)
   Products of gene:
     - PD04099 (IclR transcriptional repressor)
       Regulatees:
        TU0-4288 (iclR)
        TU00001 (aceBAK)
     - CPLX0-7605 (IclR-pyruvate transcriptional repressor)
       Regulatees:
        TU0-4288 (iclR)
        TU00001 (aceBAK)
     - CPLX0-7606 (IclR-glyox)
     - MONOMER-57 (IclR-PEP)



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 144
Effective number of orgs (counting one per cluster within 468 clusters): 99

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
TTHE300852 ncbi Thermus thermophilus HB88
TTHE262724 ncbi Thermus thermophilus HB277
TSP28240 Thermotoga sp.7
TROS309801 ncbi Thermomicrobium roseum DSM 51597
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332238
TPET390874 ncbi Thermotoga petrophila RKU-17
TMAR243274 ncbi Thermotoga maritima MSB87
TLET416591 ncbi Thermotoga lettingae TMO7
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
SSP644076 Silicibacter sp. TrichCH4B8
SSP292414 ncbi Ruegeria sp. TM10408
SSON300269 ncbi Shigella sonnei Ss0468
SPRO399741 ncbi Serratia proteamaculans 5688
SMEL266834 ncbi Sinorhizobium meliloti 10218
SMED366394 ncbi Sinorhizobium medicae WSM4198
SLAC55218 Ruegeria lacuscaerulensis7
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SGLO343509 ncbi Sodalis glossinidius morsitans8
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23388
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1978
SCO ncbi Streptomyces coelicolor A3(2)8
SBOY300268 ncbi Shigella boydii Sb2278
SAVE227882 ncbi Streptomyces avermitilis MA-46808
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99417
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170297
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.17
RSP357808 ncbi Roseiflexus sp. RS-17
RSP101510 ncbi Rhodococcus jostii RHA18
RPOM246200 ncbi Ruegeria pomeroyi DSS-37
RPAL316056 ncbi Rhodopseudomonas palustris BisB187
RMET266264 ncbi Ralstonia metallidurans CH347
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38417
REUT381666 ncbi Ralstonia eutropha H168
REUT264198 ncbi Ralstonia eutropha JMP1348
RCAS383372 ncbi Roseiflexus castenholzii DSM 139417
PTHE370438 ncbi Pelotomaculum thermopropionicum SI8
PSP296591 ncbi Polaromonas sp. JS6668
PPRO298386 ncbi Photobacterium profundum SS97
PNAP365044 ncbi Polaromonas naphthalenivorans CJ27
PMUL272843 ncbi Pasteurella multocida multocida Pm708
PCAR338963 ncbi Pelobacter carbinolicus DSM 23808
OIHE221109 ncbi Oceanobacillus iheyensis HTE8318
OCAR504832 ncbi Oligotropha carboxidovorans OM58
OANT439375 ncbi Ochrobactrum anthropi ATCC 491888
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-17
MTHE264732 ncbi Moorella thermoacetica ATCC 390738
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E8
MSP400668 ncbi Marinomonas sp. MWYL18
MSP266779 ncbi Chelativorans sp. BNC18
MSME246196 ncbi Mycobacterium smegmatis MC2 1558
MPET420662 ncbi Methylibium petroleiphilum PM18
MLOT266835 ncbi Mesorhizobium loti MAFF3030998
LXYL281090 ncbi Leifsonia xyli xyli CTCB077
LCHO395495 ncbi Leptothrix cholodnii SP-67
KRAD266940 ncbi Kineococcus radiotolerans SRS302167
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
JSP290400 ncbi Jannaschia sp. CCS18
HSOM228400 ncbi Haemophilus somnus 23368
HSOM205914 ncbi Haemophilus somnus 129PT8
GURA351605 ncbi Geobacter uraniireducens Rf47
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-28
GSUL243231 ncbi Geobacter sulfurreducens PCA7
GMET269799 ncbi Geobacter metallireducens GS-157
GKAU235909 ncbi Geobacillus kaustophilus HTA4268
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DRAD243230 ncbi Deinococcus radiodurans R17
DHAF138119 ncbi Desulfitobacterium hafniense Y518
DGEO319795 ncbi Deinococcus geothermalis DSM 113008
CSP501479 Citreicella sp. SE458
CSAL290398 ncbi Chromohalobacter salexigens DSM 30438
CNOV386415 ncbi Clostridium novyi NT7
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29018
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80527
BXEN266265 ncbi Burkholderia xenovorans LB4008
BVIE269482 ncbi Burkholderia vietnamiensis G48
BTHA271848 ncbi Burkholderia thailandensis E2648
BSP36773 Burkholderia sp.8
BPSE320373 ncbi Burkholderia pseudomallei 6688
BPSE320372 ncbi Burkholderia pseudomallei 1710b8
BPSE272560 ncbi Burkholderia pseudomallei K962438
BPET94624 Bordetella petrii8
BPER257313 ncbi Bordetella pertussis Tohama I8
BPAR257311 ncbi Bordetella parapertussis 128228
BMAL320389 ncbi Burkholderia mallei NCTC 102478
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233448
BLIC279010 ncbi Bacillus licheniformis ATCC 145807
BHAL272558 ncbi Bacillus halodurans C-1258
BCLA66692 ncbi Bacillus clausii KSM-K168
BCEN331272 ncbi Burkholderia cenocepacia HI24248
BCEN331271 ncbi Burkholderia cenocepacia AU 10548
BBRO257310 ncbi Bordetella bronchiseptica RB508
BAMB398577 ncbi Burkholderia ambifaria MC40-68
BAMB339670 ncbi Burkholderia ambifaria AMMD8
ASP76114 ncbi Aromatoleum aromaticum EbN17
ASP232721 ncbi Acidovorax sp. JS427
ASP1667 Arthrobacter sp.8
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL037
APLE416269 ncbi Actinobacillus pleuropneumoniae L208
AMET293826 ncbi Alkaliphilus metalliredigens QYMF7
ACRY349163 ncbi Acidiphilium cryptum JF-58
ABAU360910 ncbi Bordetella avium 197N7
AAVE397945 ncbi Acidovorax citrulli AAC00-18
AAUR290340 ncbi Arthrobacter aurescens TC18


Names of the homologs of the genes in the group in each of these orgs
  G7912   G7161   G7003   G6276   G6201   G6144   EG12278   EG10491   
YPSE349747 YPSIP31758_1683YPSIP31758_1683YPSIP31758_1683YPSIP31758_0297YPSIP31758_0297YPSIP31758_1683YPSIP31758_1683YPSIP31758_0297
YPSE273123 YPTB2367YPTB2367YPTB2367YPTB3654YPTB3654YPTB2367YPTB2367YPTB3654
YPES386656 YPDSF_1734YPDSF_1734YPDSF_1734YPDSF_0176YPDSF_0176YPDSF_1734YPDSF_1734YPDSF_0176
YPES377628 YPN_1916YPN_1916YPN_1916YPN_0017YPN_1916YPN_1916YPN_1916YPN_0017
YPES360102 YPA_1807YPA_1807YPA_1807YPA_0020YPA_1807YPA_1807YPA_1807YPA_0020
YPES349746 YPANGOLA_A2653YPANGOLA_A2653YPANGOLA_A2653YPANGOLA_A3924YPANGOLA_A3924YPANGOLA_A2653YPANGOLA_A2653YPANGOLA_A3924
YPES214092 YPO1714YPO1714YPO1714YPO1714YPO1714YPO1714YPO1714YPO1714
YPES187410 Y1876Y1876Y1876Y0019Y1876Y1876Y1876Y0019
YENT393305 YE1877YE1877YE1877YE3876YE3876YE1877YE1877YE3876
VVUL216895 VV2_0915VV2_0915VV2_0915VV2_0915VV2_0915VV2_0915VV2_0915
VVUL196600 VV0550VVA1402VVA1402VVA1402VV0550VVA1402VVA1402
VPAR223926 VPA0076VPA0076VPA0076VPA0076VPA0076VPA0076VPA0076
TTHE300852 TTHA0507TTHB073TTHA0507TTHA0507TTHB073TTHB248TTHA0507TTHA0507
TTHE262724 TT_C0131TT_C0131TT_C0131TT_C0131TT_C0131TT_C0131TT_C0131
TSP28240 TRQ2_0882TRQ2_0882TRQ2_0882TRQ2_0882TRQ2_0882TRQ2_0882TRQ2_0882
TROS309801 TRD_1394TRD_0252TRD_A0594TRD_1394TRD_1394TRD_0252TRD_0252
TPSE340099 TETH39_1975TETH39_1975TETH39_1975TETH39_1975TETH39_1975TETH39_1975TETH39_1975TETH39_1975
TPET390874 TPET_0859TPET_0859TPET_0859TPET_0859TPET_0859TPET_0859TPET_0859
TMAR243274 TM_0065TM_0065TM_0065TM_0065TM_0065TM_0065TM_0065
TLET416591 TLET_1881TLET_1864TLET_1864TLET_1864TLET_1864TLET_1864TLET_1864
STYP99287 STM3533STM2292STM1842STM0516STM3667STM1842STM3667STM4187
SSP644076 SCH4B_2913SCH4B_2913SCH4B_2913SCH4B_2913SCH4B_1575SCH4B_2913SCH4B_2913SCH4B_2913
SSP292414 TM1040_2698TM1040_2698TM1040_2698TM1040_2698TM1040_2112TM1040_2698TM1040_2698TM1040_2698
SSON300269 SSO_1334SSO_2309SSO_1334SSO_4189SSO_4189SSO_1334SSO_1334SSO_4189
SPRO399741 SPRO_2122SPRO_2122SPRO_2122SPRO_4491SPRO_3036SPRO_2122SPRO_3928SPRO_4491
SMEL266834 SMB20682SMB20682SMB20682SMB20682SMB20586SMA0717SMB20682SMB20682
SMED366394 SMED_4307SMED_4307SMED_4307SMED_4307SMED_5091SMED_3586SMED_3586SMED_4307
SLAC55218 SL1157_A0152SL1157_A0152SL1157_A0152SL1157_2849SL1157_A0152SL1157_A0152SL1157_0466
SHIGELLA S1514S1514S1514YBBUYIAJS1514YIAJICLR
SGLO343509 SG1318SG1318SG1318SG1318SG1318SG1318SG1318SG1318
SFLE373384 SFV_1402SFV_1402SFV_1402SFV_0473SFV_3966SFV_1402SFV_3966SFV_4089
SFLE198214 AAN42999.1AAN42999.1AAN42999.1AAN42099.1AAN45066.1AAN42999.1AAN45066.1AAN45509.1
SERY405948 SACE_5298SACE_5298SACE_5298SACE_1232SACE_3509SACE_5298SACE_5298SACE_6757
SENT454169 SEHA_C3842SEHA_C2532SEHA_C2043SEHA_C0624SEHA_C3990SEHA_C2043SEHA_C3990SEHA_C4521
SENT321314 SCH_3463SCH_2295SCH_1838SCH_0557SCH_4066SCH_1838SCH_1838SCH_4066
SENT295319 SPA0571SPA0571SPA1031SPA2206SPA3518SPA1031SPA3518SPA4025
SENT220341 STY2522STY2522STY1972STY0563STY4131STY1972STY4131STY4404
SENT209261 T0571T0571T1036T2344T3852T1036T3852T4114
SDYS300267 SDY_1975SDY_2446SDY_1975SDY_0396SDY_4323SDY_1975SDY_1975SDY_4323
SCO SCO1872SCO4989SCO2440SCO6246SCO4989SCO6246SCO4989SCO6246
SBOY300268 SBO_1240SBO_1240SBO_1240SBO_0410SBO_3582SBO_1240SBO_3582SBO_4039
SAVE227882 SAV6388SAV3279SAV5741SAV1997SAV3701SAV5741SAV3279SAV1997
RXYL266117 RXYL_2850RXYL_2850RXYL_0465RXYL_2850RXYL_2850RXYL_2850RXYL_2850
RSPH349101 RSPH17029_0202RSPH17029_0202RSPH17029_0202RSPH17029_0202RSPH17029_3751RSPH17029_0202RSPH17029_0202
RSPH272943 RSP_1550RSP_1550RSP_1550RSP_1550RSP_3024RSP_1550RSP_1550
RSP357808 ROSERS_2571ROSERS_2571ROSERS_2571ROSERS_2571ROSERS_2571ROSERS_2571ROSERS_2571
RSP101510 RHA1_RO02458RHA1_RO02458RHA1_RO02458RHA1_RO01814RHA1_RO01339RHA1_RO10207RHA1_RO02458RHA1_RO03220
RPOM246200 SPO_A0143SPO_A0143SPO_A0143SPO_0768SPO_A0143SPO_2355SPO_A0143
RPAL316056 RPC_4383RPC_4383RPC_4383RPC_4383RPC_3996RPC_4383RPC_4383
RMET266264 RMET_1205RMET_3639RMET_1205RMET_4271RMET_1205RMET_1205RMET_3639
RLEG216596 RL0918RL0918RL0918RL0918PRL110286RL0918RL0918
REUT381666 H16_A1389H16_A2746H16_A1389H16_B0879H16_A1232H16_A1389H16_A1389H16_B0879
REUT264198 REUT_A1309REUT_A0868REUT_B5569REUT_A1309REUT_A0269REUT_A1309REUT_A1309REUT_B3754
RCAS383372 RCAS_2412RCAS_2412RCAS_2412RCAS_2412RCAS_2412RCAS_2412RCAS_2412
PTHE370438 PTH_0477PTH_0477PTH_0477PTH_0477PTH_0477PTH_0477PTH_0477PTH_0477
PSP296591 BPRO_2324BPRO_3341BPRO_2324BPRO_3689BPRO_1228BPRO_2324BPRO_2324BPRO_3341
PPRO298386 PBPRB1738PBPRB1738PBPRB1738PBPRB1738PBPRB1738PBPRB1738PBPRB1738
PNAP365044 PNAP_1723PNAP_1723PNAP_1723PNAP_0864PNAP_1723PNAP_1723PNAP_0864
PMUL272843 PM1257PM1257PM1257PM1257PM1257PM1257PM1257PM1257
PCAR338963 PCAR_0759PCAR_0759PCAR_0759PCAR_0759PCAR_0759PCAR_0759PCAR_0759PCAR_0759
OIHE221109 OB2212OB2212OB2820OB2212OB2212OB2820OB2820OB2212
OCAR504832 OCAR_6563OCAR_6563OCAR_6782OCAR_6563OCAR_6749OCAR_6563OCAR_6782OCAR_6563
OANT439375 OANT_0457OANT_0457OANT_0457OANT_0457OANT_3721OANT_0457OANT_0457OANT_0457
MVAN350058 MVAN_1018MVAN_2889MVAN_4411MVAN_4411MVAN_4247MVAN_4411MVAN_4411
MTHE264732 MOTH_1780MOTH_0417MOTH_0417MOTH_0417MOTH_1780MOTH_0417MOTH_0375MOTH_0417
MSUC221988 MS0562MS0562MS0562MS0562MS0055MS0562MS0055MS0562
MSP400668 MMWYL1_0211MMWYL1_0612MMWYL1_0779MMWYL1_0211MMWYL1_3045MMWYL1_0779MMWYL1_0779MMWYL1_2008
MSP266779 MESO_3307MESO_3307MESO_3307MESO_3307MESO_0051MESO_4531MESO_4531MESO_3307
MSME246196 MSMEG_3784MSMEG_3784MSMEG_3784MSMEG_5475MSMEG_5475MSMEG_3784MSMEG_3784MSMEG_5475
MPET420662 MPE_A3670MPE_A3670MPE_A3670MPE_A3670MPE_A2678MPE_A3670MPE_A2099MPE_A3670
MLOT266835 MLL0250MLL0250MLL0250MLL0250MLR8761MLL0250MLR4184MLL0250
LXYL281090 LXX00620LXX00620LXX00620LXX00620LXX00620LXX00620LXX00620
LCHO395495 LCHO_2886LCHO_2886LCHO_2886LCHO_0440LCHO_2886LCHO_2886LCHO_2426
KRAD266940 KRAD_0198KRAD_2225KRAD_2225KRAD_2225KRAD_2225KRAD_2225KRAD_2225
KPNE272620 GKPORF_B1956GKPORF_B1956GKPORF_B1499GKPORF_B3751GKPORF_B1246GKPORF_B1499GKPORF_B3290GKPORF_B3751
JSP290400 JANN_3676JANN_3261JANN_3261JANN_3261JANN_3950JANN_3839JANN_3839JANN_3261
HSOM228400 HSM_1225HSM_1225HSM_1225HSM_1225HSM_1225HSM_1225HSM_1225HSM_1225
HSOM205914 HS_0758HS_0758HS_0758HS_0758HS_0758HS_0758HS_0758HS_0758
GURA351605 GURA_3644GURA_3644GURA_3644GURA_3644GURA_3644GURA_3644GURA_3644
GTHE420246 GTNG_1867GTNG_1387GTNG_1387GTNG_1387GTNG_1867GTNG_1867GTNG_1387GTNG_1387
GSUL243231 GSU_0514GSU_0514GSU_0514GSU_0514GSU_0514GSU_0514GSU_0514
GMET269799 GMET_3027GMET_3027GMET_2064GMET_3027GMET_3027GMET_3027GMET_2064
GKAU235909 GK1968GK1536GK1536GK1968GK1968GK1968GK1968GK1536
ESP42895 ENT638_2397ENT638_0458ENT638_2397ENT638_0221ENT638_0458ENT638_0458ENT638_0458ENT638_0221
EFER585054 EFER_1247EFER_1247EFER_1247EFER_4071EFER_1637EFER_1247EFER_3572EFER_4071
ECOO157 Z2874Z3506Z2874YBBUMHPRZ2874Z2874ICLR
ECOL83334 ECS2537ECS3136ECS2537ECS0567ECS0401ECS2537ECS2537ECS4936
ECOL585397 ECED1_2031ECED1_2714ECED1_2031ECED1_0527ECED1_0374ECED1_2031ECED1_4262ECED1_4724
ECOL585057 ECIAI39_1223ECIAI39_2395ECIAI39_1223ECIAI39_4405ECIAI39_0332ECIAI39_1223ECIAI39_4086ECIAI39_4405
ECOL585056 ECUMN_4898ECUMN_4898ECUMN_2121ECUMN_0547ECUMN_0389ECUMN_2121ECUMN_4087ECUMN_4544
ECOL585055 EC55989_2004EC55989_2004EC55989_2004EC55989_0521EC55989_0353EC55989_2004EC55989_4031EC55989_4503
ECOL585035 ECS88_4910ECS88_2397ECS88_1880ECS88_0505ECS88_3993ECS88_1880ECS88_3993ECS88_4482
ECOL585034 ECIAI1_1898ECIAI1_1898ECIAI1_1898ECIAI1_0509ECIAI1_0347ECIAI1_1898ECIAI1_3741ECIAI1_4240
ECOL481805 ECOLC_1805ECOLC_1401ECOLC_1805ECOLC_3116ECOLC_3279ECOLC_1805ECOLC_0140ECOLC_4012
ECOL469008 ECBD_1813ECBD_1411ECBD_1813ECBD_3151ECBD_3311ECBD_1813ECBD_0160ECBD_4019
ECOL439855 ECSMS35_1360ECSMS35_2402ECSMS35_1360ECSMS35_0549ECSMS35_0377ECSMS35_1360ECSMS35_3897ECSMS35_4471
ECOL413997 ECB_01798ECB_02174ECB_01798ECB_00456ECB_00300ECB_01798ECB_03426ECB_03890
ECOL409438 ECSE_2002ECSE_2002ECSE_2002ECSE_0532ECSE_0371ECSE_2002ECSE_3850ECSE_4303
ECOL405955 APECO1_882APECO1_4313APECO1_882APECO1_1508APECO1_2876APECO1_882APECO1_2876APECO1_2459
ECOL364106 UTI89_C2028UTI89_C2530UTI89_C2028UTI89_C0535UTI89_C4116UTI89_C2028UTI89_C4116UTI89_C4576
ECOL362663 ECP_1771ECP_2291ECP_1771ECP_0567ECP_3678ECP_1771ECP_3678ECP_4227
ECOL331111 ECE24377A_2056ECE24377A_2056ECE24377A_2056ECE24377A_0543ECE24377A_0370ECE24377A_2056ECE24377A_4071ECE24377A_4562
ECOL316407 ECK4288:JW4261:B4299ECK2241:JW2242:B2248ECK1826:JW1816:B1827ECK0499:JW0494:B0506ECK0343:JW0337:B0346ECK0273:JW0265:B0272ECK3563:JW3546:B3574ECK4010:JW3978:B4018
ECOL199310 C2236C2790C2236C0621C4395C2236C4395C4975
ECAR218491 ECA4123ECA4123ECA2425ECA3988ECA3988ECA2425ECA2425ECA3988
DRAD243230 DR_1156DR_1156DR_1156DR_1156DR_1156DR_1156DR_1156
DHAF138119 DSY3220DSY3220DSY3220DSY3220DSY3220DSY3220DSY3220DSY3220
DGEO319795 DGEO_2617DGEO_2617DGEO_2617DGEO_2617DGEO_2617DGEO_2617DGEO_2617DGEO_2617
CSP501479 CSE45_2125CSE45_5028CSE45_5028CSE45_5028CSE45_3198CSE45_4483CSE45_4483CSE45_5028
CSAL290398 CSAL_0297CSAL_0066CSAL_0066CSAL_0066CSAL_0297CSAL_0066CSAL_0066CSAL_0066
CNOV386415 NT01CX_1476NT01CX_1476NT01CX_1476NT01CX_1476NT01CX_1476NT01CX_1476NT01CX_1476
CHYD246194 CHY_1273CHY_1273CHY_1273CHY_1273CHY_1273CHY_1273CHY_1273CHY_1273
CBEI290402 CBEI_4129CBEI_4129CBEI_0459CBEI_4129CBEI_0459CBEI_0459CBEI_0459
BXEN266265 BXE_C0978BXE_B1912BXE_B1885BXE_C0978BXE_B2330BXE_B1885BXE_B1885BXE_B0696
BVIE269482 BCEP1808_2211BCEP1808_0592BCEP1808_2211BCEP1808_2211BCEP1808_5389BCEP1808_2211BCEP1808_0592BCEP1808_3595
BTHA271848 BTH_I1869BTH_I1175BTH_I1869BTH_I1869BTH_I2865BTH_I1869BTH_I1175BTH_II2127
BSP36773 BCEP18194_B1998BCEP18194_A3699BCEP18194_A5438BCEP18194_A5438BCEP18194_A4308BCEP18194_A5438BCEP18194_A3699BCEP18194_B1998
BPSE320373 BURPS668_2606BURPS668_3452BURPS668_3452BURPS668_2606BURPS668_1366BURPS668_2606BURPS668_3452BURPS668_A0480
BPSE320372 BURPS1710B_A2971BURPS1710B_A3765BURPS1710B_A3765BURPS1710B_A2971BURPS1710B_A1590BURPS1710B_A2971BURPS1710B_A3765BURPS1710B_B2133
BPSE272560 BPSL2295BPSL2972BPSL2972BPSL2295BPSL1269BPSL2295BPSL2972BPSS0274
BPET94624 BPET3674BPET0874BPET3674BPET0928BPET4527BPET0928BPET0928BPET0928
BPER257313 BP3319BP3319BP3319BP3438BP3319BP3438BP3438BP3438
BPAR257311 BPP4105BPP4105BPP4105BPP3544BPP4105BPP3544BPP3544BPP3544
BMAL320389 BMA10247_1495BMA10247_3295BMA10247_3295BMA10247_1495BMA10247_0453BMA10247_1495BMA10247_3295BMA10247_A0797
BMAL320388 BMASAVP1_A2223BMASAVP1_A0410BMASAVP1_A0410BMASAVP1_A2223BMASAVP1_A1170BMASAVP1_A2223BMASAVP1_A0410
BMAL243160 BMA_1714BMA_2490BMA_2490BMA_1714BMA_1787BMA_1714BMA_2490BMA_A1491
BLIC279010 BL02811BL02811BL03848BL03848BL03848BL03848BL03848
BHAL272558 BH2137BH2137BH2137BH2137BH2137BH2137BH3725BH2137
BCLA66692 ABC0521ABC0521ABC0521ABC0521ABC0571ABC0521ABC0521ABC0521
BCEN331272 BCEN2424_2132BCEN2424_0617BCEN2424_2132BCEN2424_2132BCEN2424_1199BCEN2424_2132BCEN2424_0617BCEN2424_4338
BCEN331271 BCEN_5945BCEN_0134BCEN_5945BCEN_5945BCEN_0720BCEN_5945BCEN_0134BCEN_4028
BBRO257310 BB4576BB4576BB4576BB3979BB4576BB3979BB3979BB3979
BAMB398577 BAMMC406_2042BAMMC406_0542BAMMC406_2042BAMMC406_2042BAMMC406_1081BAMMC406_2042BAMMC406_0542BAMMC406_5247
BAMB339670 BAMB_2169BAMB_0518BAMB_2169BAMB_2169BAMB_1081BAMB_2169BAMB_0518BAMB_5574
ASP76114 EBA4048EBA4048EBA4048C2A175EBA4048EBA4048EBA4048
ASP232721 AJS_1776AJS_3551AJS_1776AJS_3551AJS_1776AJS_1776AJS_1776
ASP1667 ARTH_3712ARTH_2285ARTH_4081ARTH_3712ARTH_4070ARTH_3712ARTH_3431ARTH_3431
APLE434271 APJL_0109APJL_0109APJL_0109APJL_0109APJL_0109APJL_0109APJL_0109
APLE416269 APL_0108APL_0108APL_0108APL_0108APL_0108APL_0108APL_0108APL_0108
AMET293826 AMET_1260AMET_1260AMET_1260AMET_1260AMET_1260AMET_1260AMET_1260
ACRY349163 ACRY_2240ACRY_2240ACRY_2240ACRY_2240ACRY_2199ACRY_2240ACRY_2240ACRY_2240
ABAU360910 BAV2756BAV2756BAV2756BAV0894BAV2756BAV2756BAV2756
AAVE397945 AAVE_0116AAVE_0116AAVE_0116AAVE_0116AAVE_0839AAVE_3106AAVE_3106AAVE_0116
AAUR290340 AAUR_4064AAUR_4064AAUR_4064AAUR_4088AAUR_4036AAUR_4088AAUR_4064AAUR_3405


Organism features enriched in list (features available for 135 out of the 144 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.004749236112
Disease:Bubonic_plague 0.000141366
Disease:Dysentery 0.000141366
Disease:Gastroenteritis 0.00004651013
Endospores:No 0.001368035211
GC_Content_Range4:0-40 2.204e-208213
GC_Content_Range4:40-60 0.000439168224
GC_Content_Range4:60-100 1.747e-859145
GC_Content_Range7:0-30 0.0002797247
GC_Content_Range7:30-40 2.918e-156166
GC_Content_Range7:50-60 0.000039741107
GC_Content_Range7:60-70 1.586e-754134
Genome_Size_Range5:0-2 1.882e-182155
Genome_Size_Range5:2-4 0.000077228197
Genome_Size_Range5:4-6 2.730e-1581184
Genome_Size_Range5:6-10 9.165e-62447
Genome_Size_Range9:1-2 2.029e-142128
Genome_Size_Range9:2-3 0.001280216120
Genome_Size_Range9:4-5 1.025e-84596
Genome_Size_Range9:5-6 0.00002553688
Genome_Size_Range9:6-8 0.00043211838
Genome_Size_Range9:8-10 0.005548969
Gram_Stain:Gram_Neg 2.522e-7102333
Gram_Stain:Gram_Pos 0.001268422150
Habitat:Host-associated 0.007186737206
Habitat:Terrestrial 0.00869511331
Motility:No 0.000095419151
Motility:Yes 0.000263279267
Optimal_temp.:30 0.00003801115
Oxygen_Req:Anaerobic 0.001901313102
Oxygen_Req:Facultative 0.000014467201
Shape:Coccus 0.0000452682
Shape:Rod 7.318e-12113347



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 389
Effective number of orgs (counting one per cluster within 468 clusters): 301

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110181
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103311
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VFIS312309 ncbi Vibrio fischeri ES1140
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP1755 Thermoanaerobacter sp.0
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111701
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSTU379731 ncbi Pseudomonas stutzeri A15011
PSP56811 Psychrobacter sp.1
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PENT384676 ncbi Pseudomonas entomophila L481
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124441
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GOXY290633 ncbi Gluconobacter oxydans 621H0
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CVIO243365 ncbi Chromobacterium violaceum ATCC 124721
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP11
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4490
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AHYD196024 Aeromonas hydrophila dhakensis0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G7912   G7161   G7003   G6276   G6201   G6144   EG12278   EG10491   
ZMOB264203
XORY360094
XORY342109 XOO0455
XORY291331 XOO0488
XFAS405440
XFAS183190
XFAS160492
WSUC273121
WPIP955
WPIP80849
VFIS312309
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTEN273068
TSP1755
TPEN368408
TPAL243276
TKOD69014
TERY203124
TELO197221
TDEN326298
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP94122
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSED425104
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579
SONE211586
SMUT210007
SMAR399550
SLOI323850
SHAL458817
SHAE279808
SGOR29390
SFUM335543
SEPI176280
SEPI176279
SELO269084
SDEN318161
SDEG203122
SBAL402882
SBAL399599
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779
RTYP257363
RSAL288705
RRUB269796 RRU_A1344
RRIC452659
RRIC392021
RPRO272947
RPAL316057
RPAL316055 RPE_4120
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSTU379731 PST_0105
PSP56811 PSYCPRWF_1537
PSP117
PRUM264731
PPEN278197
PMOB403833
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PING357804
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PENT384676 PSEEN1160
PCRY335284
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747
PABY272844
OTSU357244
NWIN323098
NSP387092
NSP103690
NSEN222891
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NEUT335283
NEUR228410
NARO279238 SARO_1863
MXAN246197
MTUB419947 MRA_1729
MTUB336982 TBFG_11734
MTHE349307
MTHE187420
MTBRV RV1719
MTBCDC MT1758
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108 AMB2598
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289 BCG_1758
MBOV233413 MB1748
MBAR269797
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007 MAB_0077
LWEL386043
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
ILOI283942
IHOS453591
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMOD498761
HINF374930
HINF281310
HHEP235279
HHAL349124
HDUC233412
HCHE349521
HBUT415426
HAUR316274
HACI382638
GVIO251221
GOXY290633
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FJOH376686
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DPSY177439
DOLE96561
DNOD246195
DETH243164
DDES207559
CVIO243365 CV_3919
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP78
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992
CMUR243161
CMIC443906 CMM_2408
CMIC31964 CMS2349
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ354242
CJEJ195099 CJE_0530
CJEJ192222 CJ0480C
CJEI306537
CJAP155077
CHUT269798
CHOM360107
CFEL264202
CDIP257309
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CAULO
CACE272562
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSP107806
BQUI283165
BLON206672 BL1248
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP62977 ACIAD1684
ASAL382245
APHA212042
APER272557
AORE350688
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AHYD196024
AFUL224325
AFER243159 AFE_1417
ADEH290397
ABUT367737
ABOR393595
ABAC204669
AAEO224324 AQ_764


Organism features enriched in list (features available for 365 out of the 389 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00321111617
Disease:Gastroenteritis 0.0034521313
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00547031111
Disease:Wide_range_of_infections 0.00547031111
Endospores:No 3.952e-9164211
Endospores:Yes 0.00002281953
GC_Content_Range4:0-40 1.690e-23187213
GC_Content_Range4:60-100 8.785e-1847145
GC_Content_Range7:0-30 4.248e-74447
GC_Content_Range7:30-40 6.318e-15143166
GC_Content_Range7:50-60 0.000198851107
GC_Content_Range7:60-70 1.806e-1643134
Genome_Size_Range5:0-2 2.352e-30150155
Genome_Size_Range5:2-4 0.0000285145197
Genome_Size_Range5:4-6 2.767e-2361184
Genome_Size_Range5:6-10 2.322e-10947
Genome_Size_Range9:0-1 2.219e-62727
Genome_Size_Range9:1-2 4.630e-23123128
Genome_Size_Range9:2-3 3.021e-798120
Genome_Size_Range9:4-5 1.004e-73796
Genome_Size_Range9:5-6 2.211e-132488
Genome_Size_Range9:6-8 9.357e-9738
Gram_Stain:Gram_Neg 0.0004064190333
Habitat:Host-associated 0.0001996148206
Habitat:Multiple 0.001262596178
Habitat:Terrestrial 0.0000811931
Motility:No 1.717e-7120151
Motility:Yes 1.291e-6140267
Optimal_temp.:25-30 0.0040911619
Optimal_temp.:25-35 0.0076734414
Optimal_temp.:30 0.0038251415
Optimal_temp.:30-37 0.00209651718
Oxygen_Req:Anaerobic 4.133e-785102
Oxygen_Req:Facultative 0.0004336108201
Shape:Coccus 4.573e-87282
Shape:Irregular_coccus 0.00030241717
Shape:Rod 8.042e-19168347
Shape:Sphere 0.00011421919
Shape:Spiral 0.00001593234



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 6
Effective number of orgs (counting one per cluster within 468 clusters): 6

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
TTHE300852 ncbi Thermus thermophilus HB8 0.00126649548
LXYL281090 ncbi Leifsonia xyli xyli CTCB07 0.00301186547
PTHE370438 ncbi Pelotomaculum thermopropionicum SI 0.004590211208
BXEN266265 ncbi Burkholderia xenovorans LB400 0.005000111328
DGEO319795 ncbi Deinococcus geothermalis DSM 11300 0.005518411468
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 33223 0.007931611998


Names of the homologs of the genes in the group in each of these orgs
  G7912   G7161   G7003   G6276   G6201   G6144   EG12278   EG10491   
TTHE300852 TTHA0507TTHB073TTHA0507TTHA0507TTHB073TTHB248TTHA0507TTHA0507
LXYL281090 LXX00620LXX00620LXX00620LXX00620LXX00620LXX00620LXX00620
PTHE370438 PTH_0477PTH_0477PTH_0477PTH_0477PTH_0477PTH_0477PTH_0477PTH_0477
BXEN266265 BXE_C0978BXE_B1912BXE_B1885BXE_C0978BXE_B2330BXE_B1885BXE_B1885BXE_B0696
DGEO319795 DGEO_2617DGEO_2617DGEO_2617DGEO_2617DGEO_2617DGEO_2617DGEO_2617DGEO_2617
TPSE340099 TETH39_1975TETH39_1975TETH39_1975TETH39_1975TETH39_1975TETH39_1975TETH39_1975TETH39_1975


Organism features enriched in list (features available for 6 out of the 6 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Temp._range:Thermophilic 0.0033593335



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73650.5697
GLUCARDEG-PWY (D-glucarate degradation I)152920.5042
GALACTCAT-PWY (D-galactonate degradation)104690.4591
XYLCAT-PWY (xylose degradation I)2171070.4543
RHAMCAT-PWY (rhamnose degradation)91630.4524
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121050.4500
GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)2081000.4192
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135760.4140
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45380.4059



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7161   G7003   G6276   G6201   G6144   EG12278   EG10491   
G79120.9997010.9997620.9997020.9986450.9997790.9995940.999547
G71610.9997210.9996280.9987710.9996460.9996550.999643
G70030.9996830.9986940.9998120.9997040.999645
G62760.998570.9997520.9996480.999823
G62010.9988180.9990750.99898
G61440.9997430.999631
EG122780.999651
EG10491



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PAIRWISE BLAST SCORES:

  G7912   G7161   G7003   G6276   G6201   G6144   EG12278   EG10491   
G79120.0f07.1e-258.8e-273.0e-19-4.4e-254.2e-204.3e-18
G71617.1e-250.0f09.1e-251.5e-17-3.4e-25-5.5e-18
G70038.8e-27-0.0f02.1e-25-1.3e-432.3e-286.9e-27
G6276--1.5e-240.0f0-1.7e-251.2e-225.5e-50
G6201--2.3e-9-0.0f04.7e-142.4e-111.6e-10
G61442.2e-21-4.2e-364.7e-21-0.0f01.0e-23-
EG122784.2e-20-2.3e-285.0e-24-9.5e-300.0f03.9e-24
EG10491--6.9e-279.7e-53-5.4e-273.9e-240.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7912 (centered at G7912)
G7161 (centered at G7161)
G7003 (centered at G7003)
G6276 (centered at G6276)
G6201 (centered at G6201)
G6144 (centered at G6144)
EG12278 (centered at EG12278)
EG10491 (centered at EG10491)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7912   G7161   G7003   G6276   G6201   G6144   EG12278   EG10491   
189/623192/623199/623191/623180/623197/623195/623197/623
AAEO224324:0:Tyes0-------
AAUR290340:2:Tyes6516516516756236756510
AAVE397945:0:Tyes0000709294229420
ABAU360910:0:Tyes1864-186418640186418641864
ACAU438753:0:Tyes-1833-02451276718330
ACEL351607:0:Tyes01160-0---0
ACRY349163:8:Tyes383838380383838
AEHR187272:0:Tyes00-0-000
AFER243159:0:Tyes-------0
AMET293826:0:Tyes0000-000
APLE416269:0:Tyes00000000
APLE434271:0:Tno00-00000
ASP1667:3:Tyes14430181914431808144311621162
ASP232721:2:Tyes01720-01720000
ASP62928:0:Tyes---0-000
ASP62977:0:Tyes----0---
ASP76114:2:Tyes-1282128212820128212821282
BABO262698:0:Tno-00-00-486
BAMB339670:1:Tno-------0
BAMB339670:3:Tno169001690169057816900-
BAMB398577:2:Tno-------0
BAMB398577:3:Tno151801518151854715180-
BAMY326423:0:Tyes0-00-00-
BANT260799:0:Tno0000-0--
BANT261594:2:Tno0000-0--
BANT568206:2:Tyes0000-0--
BANT592021:2:Tno0000-0--
BBRO257310:0:Tyes6056056050605000
BCAN483179:0:Tno-00-00-527
BCEN331271:0:Tno0-00-0--
BCEN331271:1:Tno-------0
BCEN331271:2:Tno-0--599-0-
BCEN331272:2:Tyes-------0
BCEN331272:3:Tyes151301513151358115130-
BCER226900:1:Tyes0000-0--
BCER288681:0:Tno0000-0--
BCER315749:1:Tyes00-0-00-
BCER405917:1:Tyes9050905905-905--
BCER572264:1:Tno1008010081008-1008--
BCLA66692:0:Tyes000050000
BHAL272558:0:Tyes00000016030
BJAP224911:0:Fyes--72302136-00
BLIC279010:0:Tyes0034683468-346834683468
BLON206672:0:Tyes-------0
BMAL243160:0:Tno-------0
BMAL243160:1:Tno06966960620696-
BMAL320388:1:Tno177300177374417730-
BMAL320389:0:Tyes-------0
BMAL320389:1:Tyes1020278427841020010202784-
BMEL224914:0:Tno-528528-528528-0
BMEL359391:0:Tno-00-00-481
BOVI236:0:Tyes-0--00--
BPAR257311:0:Tno5465465460546000
BPER257313:0:Tyes0001080108108108
BPET94624:0:Tyes283602836543690545454
BPSE272560:0:Tyes-------0
BPSE272560:1:Tyes1025171317131025010251713-
BPSE320372:0:Tno-------0
BPSE320372:1:Tno1282206020601282012822060-
BPSE320373:0:Tno-------0
BPSE320373:1:Tno1198200920091198011982009-
BPUM315750:0:Tyes0----0--
BSP36773:1:Tyes0------0
BSP36773:2:Tyes-01772177262217720-
BSP376:0:Tyes-0001049-00
BSUB:0:Tyes0000-00-
BSUI204722:0:Tyes-00-00-497
BSUI470137:0:Tno----0--1106
BTHA271848:0:Tno-------0
BTHA271848:1:Tno678067867816566780-
BTHU281309:1:Tno0000-0--
BTHU412694:1:Tno8870887887-887--
BVIE269482:6:Tyes----1753--0
BVIE269482:7:Tyes1609016091609-16090-
BWEI315730:4:Tyes0000-0--
BXEN266265:0:Tyes0--0----
BXEN266265:1:Tyes-399426-04264261603
CBEI290402:0:Tyes3594359403594-000
CDIF272563:1:Tyes582-0--000
CEFF196164:0:Fyes----0-00
CFET360106:0:Tyes00------
CGLU196627:0:Tyes----0-00
CHYD246194:0:Tyes00000000
CJEJ192222:0:Tyes0-------
CJEJ195099:0:Tno0-------
CJEJ360109:0:Tyes00------
CMIC31964:2:Tyes-------0
CMIC443906:2:Tyes-------0
CNOV386415:0:Tyes0000-000
CPSY167879:0:Tyes---12720012720
CSAL290398:0:Tyes230000230000
CSP501479:4:Fyes-000---0
CSP501479:5:Fyes-----00-
CSP501479:7:Fyes----0---
CSP501479:8:Fyes0-------
CVIO243365:0:Tyes----0---
DARO159087:0:Tyes0--0237000
DGEO319795:0:Tyes00000000
DHAF138119:0:Tyes00000000
DRAD243230:3:Tyes0000-000
DRED349161:0:Tyes0-0--0--
DSHI398580:5:Tyes366000-366-0
ECAR218491:0:Tyes17371737015961596001596
ECOL199310:0:Tno15752121157503702157537024272
ECOL316407:0:Tno40111990156722972034263733
ECOL331111:6:Tno1622162216221700162235584022
ECOL362663:0:Tno11981718119803109119831093650
ECOL364106:1:Tno14921994149203570149235704021
ECOL405955:2:Tyes12461720124603158124631583596
ECOL409438:6:Tyes1653165316531610165335424023
ECOL413997:0:Tno1490187114901550149031423626
ECOL439855:4:Tno9481979948172094834153954
ECOL469008:0:Tno16681269166829773137166803847
ECOL481805:0:Tno16801281168029923154168003883
ECOL585034:0:Tno1534153415341630153433563826
ECOL585035:0:Tno42321817132003369132033693831
ECOL585055:0:Tno1640164016401640164036324097
ECOL585056:2:Tno4496449617371620173737054162
ECOL585057:0:Tno91020599104091091037654091
ECOL585397:0:Tno1598226715981530159837824247
ECOL83334:0:Tno2178279121781670217821784659
ECOLI:0:Tno41012022159323574033673817
ECOO157:0:Tno2221279622211660222122214691
EFAE226185:3:Tyes000---0-
EFER585054:1:Tyes0002790382023172790
ESP42895:1:Tyes2190239219002392392390
FALN326424:0:Tyes-0----00
FSP1855:0:Tyes--0000-0
GKAU235909:1:Tyes444004444444444440
GMET269799:1:Tyes954-95409549549540
GSUL243231:0:Tyes0-000000
GTHE420246:1:Tyes47000047047000
GURA351605:0:Tyes0-000000
HARS204773:0:Tyes---0-00-
HINF71421:0:Tno0-000-00
HMAR272569:8:Tyes00-0-0-0
HMUK485914:0:Tyes000---00
HSOM205914:1:Tyes00000000
HSOM228400:0:Tno00000000
HWAL362976:1:Tyes000---54-
JSP290400:1:Tyes4210006975855850
JSP375286:0:Tyes0-00-000
KPNE272620:2:Tyes6996992512436025120042436
KRAD266940:2:Fyes0250325032503-250325032503
LBRE387344:2:Tyes000----0
LCAS321967:1:Tyes-0----0-
LCHO395495:0:Tyes2476-247624760247624762007
LSPH444177:1:Tyes----0--925
LXYL281090:0:Tyes0000-000
MABS561007:1:Tyes-0------
MAVI243243:0:Tyes-0487--487--
MBOV233413:0:Tno------0-
MBOV410289:0:Tno------0-
MGIL350054:3:Tyes00-0-0087
MLOT266835:2:Tyes00004746030560
MMAG342108:0:Tyes----0---
MPET420662:1:Tyes1570157015701570579157001570
MSME246196:0:Tyes00016721672001672
MSP164756:1:Tno02153-2153-215321532153
MSP164757:0:Tno02182-2182-218221822182
MSP189918:2:Tyes02179-2179-217921792179
MSP266779:1:Tyes-----00-
MSP266779:3:Tyes32753275327532750--3275
MSP400668:0:Tyes0395562028655625621800
MSP409:2:Tyes-0---00-
MSUC221988:0:Tyes53053053053005300530
MTBCDC:0:Tno------0-
MTBRV:0:Tno------0-
MTHE264732:0:Tyes1372393939137239039
MTUB336982:0:Tno------0-
MTUB419947:0:Tyes------0-
MVAN350058:0:Tyes018523365336531973365-3365
NARO279238:0:Tyes----0---
NFAR247156:2:Tyes05711056-10565711056-
NPHA348780:1:Tyes0-------
NPHA348780:2:Tyes-5020502---502
NSP35761:1:Tyes00-0-196500
OANT439375:4:Tyes----0---
OANT439375:5:Tyes0000-000
OCAR504832:0:Tyes00218018502180
OIHE221109:0:Tyes00612006126120
PAER208963:0:Tyes--0-4421---
PAER208964:0:Tno--0-4236--80
PATL342610:0:Tyes----0-1535-
PCAR338963:0:Tyes00000000
PDIS435591:0:Tyes00----0-
PENT384676:0:Tyes--0-----
PFLU205922:0:Tyes-28840-29-2884-
PFLU216595:1:Tyes--0-2132021322132
PFLU220664:0:Tyes--09423200942
PLUM243265:0:Fyes-4313-43130043134313
PMUL272843:1:Tyes00000000
PNAP365044:8:Tyes868-86886808688680
PPRO298386:1:Tyes0000-000
PPUT160488:0:Tno--0-1238---
PPUT351746:0:Tyes--1263-0--8
PPUT76869:0:Tno--1242-0---
PSP296591:2:Tyes10892104108924430108910892104
PSP312153:0:Tyes0-00-000
PSP56811:2:Tyes----0---
PSTU379731:0:Tyes----0---
PSYR205918:0:Tyes-02029-0-2029-
PSYR223283:2:Tyes-02095-0-2095-
PTHE370438:0:Tyes00000000
RCAS383372:0:Tyes0000-000
RDEN375451:4:Tyes003030743--30
RETL347834:3:Tyes----0---
RETL347834:5:Tyes000--0-0
REUT264198:2:Tyes--1807----0
REUT264198:3:Tyes1040601-1040010401040-
REUT381666:1:Tyes---0---0
REUT381666:2:Tyes1531453153-0153153-
RFER338969:1:Tyes0-00-000
RLEG216596:4:Tyes----0---
RLEG216596:6:Tyes0000-0-0
RMET266264:1:Tyes--0-626--0
RMET266264:2:Tyes0--0-00-
RPAL258594:0:Tyes-36893689-0-36893689
RPAL316055:0:Tyes----0---
RPAL316056:0:Tyes3913913913910391-391
RPAL316058:0:Tyes--214521450---
RPOM246200:0:Tyes-000-0-0
RPOM246200:1:Tyes----0-1558-
RRUB269796:1:Tyes----0---
RSOL267608:1:Tyes0--0657000
RSP101510:1:Fyes-----0--
RSP101510:3:Fyes1114111411144700-11141874
RSP357808:0:Tyes0000-000
RSPH272943:3:Tyes----0---
RSPH272943:4:Tyes0000-0-0
RSPH349101:1:Tno----0---
RSPH349101:2:Tno0000-0-0
RSPH349102:5:Tyes0000-0-0
RXYL266117:0:Tyes-2375237502375237523752375
SAVE227882:1:Fyes44591294381101720381112940
SBOY300268:1:Tyes7747747740300577430053430
SCO:2:Fyes0315756844163157441631574416
SDYS300267:1:Tyes14961946149603680149614963680
SENT209261:0:Tno004361677312843631283379
SENT220341:0:Tno17471747125003231125032313482
SENT295319:0:Tno004411564283344128333313
SENT321314:2:Tno29571768130303578130313033578
SENT454169:2:Tno31001843137203245137232453737
SERY405948:0:Tyes40084008400802248400840085404
SFLE198214:0:Tyes9239239230304792330473518
SFLE373384:0:Tno8798798790331387933133420
SGLO343509:3:Tyes00000000
SHIGELLA:0:Tno9459459450325894532582795
SLAC55218:0:Fyes000--00-
SLAC55218:1:Fyes----2333--0
SMED366394:1:Tyes----0---
SMED366394:2:Tyes711711711711-00711
SMEL266834:0:Tyes-----0--
SMEL266834:1:Tyes0000109-00
SPRO399741:1:Tyes0002394919018292394
SSON300269:1:Tyes0924027042704002704
SSP292414:2:Tyes5955955955950595595595
SSP644076:6:Fyes0000-000
SSP644076:7:Fyes----0---
STHE292459:0:Tyes--000000
STYP99287:1:Tyes29911758131003125131031253639
TDEN292415:0:Tyes---0-000
TFUS269800:0:Tyes-0-00-00
TLET416591:0:Tyes17000-000
TMAR243274:0:Tyes0000-000
TPET390874:0:Tno0000-000
TPSE340099:0:Tyes00000000
TROS309801:0:Tyes--0-----
TROS309801:1:Tyes10940-1094-109400
TSP28240:0:Tyes0000-000
TTHE262724:1:Tyes0000-000
TTHE300852:1:Tyes-0--0175--
TTHE300852:2:Tyes0-00--00
VEIS391735:1:Tyes---5580558558928
VPAR223926:0:Tyes0000-000
VVUL196600:1:Tyes-000--00
VVUL196600:2:Tyes0----0--
VVUL216895:0:Tno0000-000
XAUT78245:1:Tyes-643-0450--0
XAXO190486:0:Tyes----0-0-
XCAM190485:0:Tyes--0-0-0-
XCAM314565:0:Tno--0-0-0-
XCAM316273:0:Tno--0-0-0-
XCAM487884:0:Tno--0-0-0-
XORY291331:0:Tno----0---
XORY342109:0:Tyes----0---
YENT393305:1:Tyes00019421942001942
YPES187410:5:Tno18821882188201882188218820
YPES214092:3:Tno00000000
YPES349746:2:Tno00012421242001242
YPES360102:3:Tyes18261826182601826182618260
YPES377628:2:Tno19431943194301943194319430
YPES386656:2:Tno15521552155200155215520
YPSE273123:2:Tno00012771277001277
YPSE349747:2:Tno13711371137100137113710



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