CANDIDATE ID: 221

CANDIDATE ID: 221

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9926686e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- G6630 (ychQ) (b1213)
   Products of gene:
     - G6630-MONOMER (predicted transcriptional regulator)

- EG12424 (prmC) (b1212)
   Products of gene:
     - EG12424-MONOMER (protein-(glutamine-N5) methyltransferase)
       Reactions:
        S-adenosyl-L-methionine + L-glutamine  ->  S-adenosyl-L-homocysteine + N5-methyl-L-glutamine + H+

- EG11294 (ispE) (b1208)
   Products of gene:
     - EG11294-MONOMER (IspE)
     - CPLX0-3841 (4-diphosphocytidyl-2-C-methylerythritol kinase)
       Reactions:
        4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + ATP  ->  2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + ADP + 2 H+
         In pathways
         PWY-5121 (PWY-5121)
         PWY-6270 (PWY-6270)
         NONMEVIPP-PWY (methylerythritol phosphate pathway)

- EG11293 (lolB) (b1209)
   Products of gene:
     - EG11293-MONOMER (outer membrane lipoprotein, localization of lipoproteins in the outer membrane)

- EG11251 (ychA) (b1214)
   Products of gene:
     - EG11251-MONOMER (predicted transcriptional regulator)

- EG10774 (prs) (b1207)
   Products of gene:
     - PRPPSYN-MONOMER (ribose-phosphate diphosphokinase)
       Reactions:
        ATP + D-ribose-5-phosphate  =  5-phospho-alpha-D-ribose 1-diphosphate + AMP + 2 H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         PWY0-662 (PRPP biosynthesis I)

- EG10761 (prfA) (b1211)
   Products of gene:
     - EG10761-MONOMER (peptide chain release factor RF1)

- EG10427 (hemA) (b1210)
   Products of gene:
     - GLUTRNAREDUCT-MONOMER (HemA)
     - CPLX0-3741 (glutamyl-tRNA reductase)
       Reactions:
        glutamate-1-semialdehyde + NADP+ + tRNAGlu  =  L-glutamyl-tRNAGlu + NADPH
         In pathways
         PWY-5918 (PWY-5918)
         PWY-5188 (tetrapyrrole biosynthesis I)



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 134
Effective number of orgs (counting one per cluster within 468 clusters): 80

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XFAS405440 ncbi Xylella fastidiosa M127
XFAS183190 ncbi Xylella fastidiosa Temecula17
XFAS160492 ncbi Xylella fastidiosa 9a5c7
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VFIS312309 ncbi Vibrio fischeri ES1148
VCHO345073 ncbi Vibrio cholerae O3958
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169618
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
SSP94122 ncbi Shewanella sp. ANA-38
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB38
SPRO399741 ncbi Serratia proteamaculans 5688
SPEA398579 ncbi Shewanella pealeana ATCC 7003458
SONE211586 ncbi Shewanella oneidensis MR-18
SLOI323850 ncbi Shewanella loihica PV-48
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SHAL458817 ncbi Shewanella halifaxensis HAW-EB48
SGLO343509 ncbi Sodalis glossinidius morsitans7
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1978
SDEN318161 ncbi Shewanella denitrificans OS2178
SDEG203122 ncbi Saccharophagus degradans 2-407
SBOY300268 ncbi Shigella boydii Sb2278
SBAL402882 ncbi Shewanella baltica OS1858
SBAL399599 ncbi Shewanella baltica OS1958
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1347
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS98
PNAP365044 ncbi Polaromonas naphthalenivorans CJ27
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 377
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1258
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PATL342610 ncbi Pseudoalteromonas atlantica T6c8
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
NOCE323261 ncbi Nitrosococcus oceani ATCC 197077
NMUL323848 ncbi Nitrosospira multiformis ATCC 251967
NMEN122587 ncbi Neisseria meningitidis Z24917
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197187
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E8
MPET420662 ncbi Methylibium petroleiphilum PM17
MAQU351348 ncbi Marinobacter aquaeolei VT87
LCHO395495 ncbi Leptothrix cholodnii SP-67
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
JSP375286 ncbi Janthinobacterium sp. Marseille7
ILOI283942 ncbi Idiomarina loihiensis L2TR7
HSOM228400 ncbi Haemophilus somnus 23367
HSOM205914 ncbi Haemophilus somnus 129PT7
HHAL349124 ncbi Halorhodospira halophila SL17
HDUC233412 ncbi Haemophilus ducreyi 35000HP7
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans8
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DARO159087 ncbi Dechloromonas aromatica RCB7
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CPSY167879 ncbi Colwellia psychrerythraea 34H8
CJAP155077 Cellvibrio japonicus7
BTHA271848 ncbi Burkholderia thailandensis E2647
BSP36773 Burkholderia sp.7
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
ASP62928 ncbi Azoarcus sp. BH727
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL038
APLE416269 ncbi Actinobacillus pleuropneumoniae L208
AHYD196024 Aeromonas hydrophila dhakensis8
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17


Names of the homologs of the genes in the group in each of these orgs
  G6630   EG12424   EG11294   EG11293   EG11251   EG10774   EG10761   EG10427   
YPSE349747 YPSIP31758_2064YPSIP31758_2065YPSIP31758_2069YPSIP31758_2068YPSIP31758_2063YPSIP31758_2070YPSIP31758_2066YPSIP31758_2067
YPSE273123 YPTB2007YPTB2006YPTB2002YPTB2003YPTB2008YPTB2001YPTB2005YPTB2004
YPES386656 YPDSF_1099YPDSF_1100YPDSF_1104YPDSF_1103YPDSF_1098YPDSF_1106YPDSF_1101YPDSF_1102
YPES377628 YPN_1501YPN_1500YPN_1496YPN_1497YPN_1502YPN_1494YPN_1499YPN_1498
YPES360102 YPA_1403YPA_1402YPA_1398YPA_1399YPA_1404YPA_1396YPA_1401YPA_1400
YPES349746 YPANGOLA_A2458YPANGOLA_A2459YPANGOLA_A2463YPANGOLA_A2462YPANGOLA_A2457YPANGOLA_A2464YPANGOLA_A2460YPANGOLA_A2461
YPES214092 YPO2019YPO2018YPO2014YPO2015YPO2020YPO2013YPO2017YPO2016
YPES187410 Y2288Y2289Y2293Y2292Y2287Y2295Y2290Y2291
YENT393305 YE2429YE2430YE2434YE2433YE2428YE2435YE2431YE2432
XORY360094 XOOORF_1213XOOORF_1255XOOORF_1254XOOORF_4223XOOORF_1258XOOORF_1251XOOORF_1252
XORY342109 XOO3446XOO3406XOO3407XOO1021XOO3405XOO3410XOO3409
XORY291331 XOO3644XOO3604XOO3605XOO1125XOO3603XOO3608XOO3607
XFAS405440 XFASM12_0851XFASM12_2208XFASM12_2209XFASM12_0834XFASM12_2207XFASM12_2212XFASM12_2211
XFAS183190 PD_0728PD_2018PD_2019PD_0709PD_2016PD_2022PD_2021
XFAS160492 XF1512XF2645XF2646XF1494XF2644XF2649XF2648
XCAM487884 XCC-B100_3516XCC-B100_3478XCC-B100_3479XCC-B100_0917XCC-B100_3477XCC-B100_3482XCC-B100_3481
XCAM316273 XCAORF_1022XCAORF_1062XCAORF_1061XCAORF_3608XCAORF_1064XCAORF_1057XCAORF_1058
XCAM314565 XC_3395XC_3359XC_3360XC_0897XC_3358XC_3363XC_3362
XCAM190485 XCC0835XCC0871XCC0870XCC3267XCC0873XCC0867XCC0868
XAXO190486 XAC0908XAC0948XAC0947XAC3413XAC0950XAC0944XAC0945
VVUL216895 VV1_0251VV1_0252VV1_0256VV1_0255VV1_0250VV1_0257VV1_0253VV1_0254
VVUL196600 VV0933VV0932VV0928VV0929VV0934VV0926VV0931VV0930
VPAR223926 VP0745VP0744VP0740VP0741VP0746VP0739VP0743VP0742
VFIS312309 VF0770VF0769VF0765VF0766VF0771VF0764VF0768VF0767
VCHO345073 VC0395_A1754VC0395_A1755VC0395_A1759VC0395_A1758VC0395_A1753VC0395_A1760VC0395_A1756VC0395_A1757
VCHO VC2177VC2178VC2182VC2181VC2176VC2183VC2179VC2180
STYP99287 STM1774STM1775STM1779STM1778STM1773STM1780STM1776STM1777
SSP94122 SHEWANA3_0772SHEWANA3_0770SHEWANA3_0766SHEWANA3_0767SHEWANA3_0773SHEWANA3_0765SHEWANA3_0769SHEWANA3_0768
SSON300269 SSO_1965SSO_1966SSO_1970SSO_1969SSO_1971SSO_1967SSO_1968
SSED425104 SSED_3453SSED_3458SSED_3462SSED_3461SSED_3452SSED_3463SSED_3459SSED_3460
SPRO399741 SPRO_1992SPRO_1991SPRO_1987SPRO_1988SPRO_1993SPRO_1986SPRO_1990SPRO_1989
SPEA398579 SPEA_3124SPEA_3125SPEA_3129SPEA_3128SPEA_3123SPEA_3130SPEA_3126SPEA_3127
SONE211586 SO_3830SO_3832SO_3836SO_3835SO_3829SO_3837SO_3833SO_3834
SLOI323850 SHEW_2907SHEW_2911SHEW_2915SHEW_2914SHEW_2906SHEW_2916SHEW_2912SHEW_2913
SHIGELLA S1300HEMKYCHBHEMMYCHAPRSAPRFAHEMA
SHAL458817 SHAL_3209SHAL_3210SHAL_3214SHAL_3213SHAL_3208SHAL_3215SHAL_3211SHAL_3212
SGLO343509 SG1875SG1879SG1878SG1874SG1880SG1876SG1877
SFLE373384 SFV_1227SFV_1226SFV_1222SFV_1223SFV_1228SFV_1221SFV_1225SFV_1224
SFLE198214 AAN42829.1AAN42828.1AAN42824.1AAN42825.1AAN42830.1AAN42823.1AAN42827.1AAN42826.1
SENT454169 SEHA_C1969SEHA_C1970SEHA_C1975SEHA_C1974SEHA_C1968SEHA_C1977SEHA_C1971SEHA_C1972
SENT321314 SCH_1768SCH_1769SCH_1773SCH_1772SCH_1767SCH_1774SCH_1770SCH_1771
SENT295319 SPA1099SPA1098SPA1094SPA1095SPA1100SPA1093SPA1097SPA1096
SENT220341 STY1899STY1900STY1905STY1904STY1898STY1906STY1901STY1902
SENT209261 T1102T1101T1097T1098T1103T1096T1100T1099
SDYS300267 SDY_1262SDY_1261SDY_1257SDY_1258SDY_1263SDY_1256SDY_1260SDY_1259
SDEN318161 SDEN_0922SDEN_0921SDEN_0917SDEN_0918SDEN_0923SDEN_0916SDEN_0920SDEN_0919
SDEG203122 SDE_1462SDE_3250SDE_3255SDE_3254SDE_3256SDE_3251SDE_3252
SBOY300268 SBO_1854SBO_1855SBO_1859SBO_1858SBO_1853SBO_1860SBO_1856SBO_1857
SBAL402882 SHEW185_3611SHEW185_3613SHEW185_3617SHEW185_3616SHEW185_3610SHEW185_3618SHEW185_3614SHEW185_3615
SBAL399599 SBAL195_3734SBAL195_3736SBAL195_3740SBAL195_3739SBAL195_3733SBAL195_3741SBAL195_3737SBAL195_3738
RSOL267608 RSC2903RSC0396RSC0397RSC2558RSC0395RSC2901RSC2900
RFER338969 RFER_1885RFER_1279RFER_1659RFER_2526RFER_1660RFER_1280RFER_1281
REUT381666 H16_A3342H16_A0374H16_A0375H16_A3067H16_A0372H16_A3340H16_A3339
REUT264198 REUT_A3046REUT_A0343REUT_A0344REUT_A2767REUT_A0342REUT_A3044REUT_A3043
PSYR205918 PSYR_0950PSYR_0945PSYR_0946PSYR_1027PSYR_0944PSYR_0949PSYR_0948
PSP296591 BPRO_4728BPRO_0849BPRO_1294BPRO_3568BPRO_1293BPRO_0850BPRO_0851
PPUT76869 PPUTGB1_0775PPUTGB1_0767PPUTGB1_0768PPUTGB1_4602PPUTGB1_0766PPUTGB1_0774PPUTGB1_0773
PPUT351746 PPUT_0762PPUT_0757PPUT_0758PPUT_4478PPUT_0756PPUT_0761PPUT_0760
PPUT160488 PP_0734PP_0723PP_0724PP_4618PP_0722PP_0733PP_0732
PPRO298386 PBPRA2843PBPRA2844PBPRA2848PBPRA2847PBPRA2842PBPRA2849PBPRA2845PBPRA2846
PNAP365044 PNAP_1330PNAP_0774PNAP_0900PNAP_3003PNAP_0899PNAP_0775PNAP_0776
PMUL272843 PM0556PM0245PM0246PM0557PM0244PM0555PM0684
PMEN399739 PMEN_1061PMEN_1056PMEN_1057PMEN_3249PMEN_1055PMEN_1060PMEN_1059
PLUM243265 PLU2071PLU2067PLU2068PLU2072PLU2066PLU2070PLU2069
PING357804 PING_1608PING_0912PING_0913PING_1610PING_0911PING_1607PING_1606
PHAL326442 PSHAA1060PSHAA1059PSHAA1055PSHAA1056PSHAA1061PSHAA1054PSHAA1058PSHAA1057
PFLU220664 PFL_5158PFL_5163PFL_5162PFL_0972PFL_5165PFL_5159PFL_5160
PFLU216595 PFLU0739PFLU0733PFLU0734PFLU1029PFLU0732PFLU0738PFLU0737
PFLU205922 PFL_4747PFL_4752PFL_4751PFL_0914PFL_4753PFL_4748PFL_4749
PENT384676 PSEEN0877PSEEN0858PSEEN0859PSEEN4608PSEEN0857PSEEN0876PSEEN0875
PATL342610 PATL_2560PATL_2562PATL_2566PATL_2565PATL_2559PATL_2567PATL_2563PATL_2564
PAER208964 PA4664PA4669PA4668PA3419PA4670PA4665PA4666
PAER208963 PA14_61680PA14_61750PA14_61740PA14_19860PA14_61770PA14_61700PA14_61710
NOCE323261 NOC_2379NOC_0393NOC_0513NOC_0512NOC_0514NOC_0509NOC_0510
NMUL323848 NMUL_A2077NMUL_A2640NMUL_A0588NMUL_A0587NMUL_A0589NMUL_A2641NMUL_A2642
NMEN122587 NMA0959NMA0369NMA1092NMA1091NMA1093NMA1945NMA0760
NEUT335283 NEUT_1677NEUT_0828NEUT_1139NEUT_1138NEUT_1140NEUT_0827NEUT_0826
NEUR228410 NE1499NE1912NE1827NE1828NE1826NE1913NE1914
MSUC221988 MS1469MS1191MS1535MS1534MS1190MS1536MS1192MS1324
MPET420662 MPE_A1689MPE_A0522MPE_A3230MPE_A3024MPE_A3229MPE_A0523MPE_A0524
MAQU351348 MAQU_3144MAQU_2359MAQU_2364MAQU_2363MAQU_2365MAQU_2360MAQU_2361
LCHO395495 LCHO_3554LCHO_0579LCHO_3497LCHO_0671LCHO_3498LCHO_0580LCHO_0581
KPNE272620 GKPORF_B1375GKPORF_B1376GKPORF_B1380GKPORF_B1379GKPORF_B1374GKPORF_B1381GKPORF_B1377GKPORF_B1378
JSP375286 MMA_0211MMA_3127MMA_3126MMA_2521MMA_3128MMA_0213MMA_0214
ILOI283942 IL0922IL0924IL0928IL0927IL0929IL0925IL0926
HSOM228400 HSM_1423HSM_1475HSM_1476HSM_1422HSM_1474HSM_1425HSM_1279
HSOM205914 HS_0948HS_0997HS_0998HS_0947HS_0996HS_0950HS_0810
HHAL349124 HHAL_2402HHAL_0999HHAL_0990HHAL_0991HHAL_0989HHAL_0994HHAL_0993
HDUC233412 HD_1361HD_0855HD_1628HD_1629HD_0856HD_1627HD_0853
HCHE349521 HCH_05230HCH_01734HCH_01727HCH_01728HCH_01726HCH_01733HCH_01731
HARS204773 HEAR1431HEAR0183HEAR2892HEAR2891HEAR2453HEAR2893HEAR0185HEAR0186
ESP42895 ENT638_2335ENT638_2336ENT638_2340ENT638_2339ENT638_2334ENT638_2341ENT638_2337ENT638_2338
EFER585054 EFER_1749EFER_1753EFER_1752EFER_1747EFER_1754EFER_1750EFER_1751
ECOO157 Z1984HEMKYCHBHEMMYCHAPRSAPRFAHEMA
ECOL83334 ECS1718ECS1717ECS1713ECS1714ECS1719ECS1712ECS1716ECS1715
ECOL585397 ECED1_1361ECED1_1360ECED1_1356ECED1_1357ECED1_1362ECED1_1355ECED1_1359ECED1_1358
ECOL585057 ECIAI39_1549ECIAI39_1548ECIAI39_1544ECIAI39_1545ECIAI39_1550ECIAI39_1543ECIAI39_1547ECIAI39_1546
ECOL585056 ECUMN_1510ECUMN_1509ECUMN_1505ECUMN_1506ECUMN_1511ECUMN_1504ECUMN_1508ECUMN_1507
ECOL585055 EC55989_1309EC55989_1308EC55989_1304EC55989_1305EC55989_1310EC55989_1303EC55989_1307EC55989_1306
ECOL585035 ECS88_1281ECS88_1280ECS88_1276ECS88_1277ECS88_1282ECS88_1275ECS88_1279ECS88_1278
ECOL585034 ECIAI1_1234ECIAI1_1233ECIAI1_1229ECIAI1_1230ECIAI1_1235ECIAI1_1228ECIAI1_1232ECIAI1_1231
ECOL481805 ECOLC_2413ECOLC_2414ECOLC_2418ECOLC_2417ECOLC_2412ECOLC_2419ECOLC_2415ECOLC_2416
ECOL469008 ECBD_2408ECBD_2409ECBD_2413ECBD_2412ECBD_2407ECBD_2414ECBD_2410ECBD_2411
ECOL439855 ECSMS35_1929ECSMS35_1930ECSMS35_1934ECSMS35_1933ECSMS35_1928ECSMS35_1935ECSMS35_1931ECSMS35_1932
ECOL413997 ECB_01188ECB_01187ECB_01183ECB_01184ECB_01189ECB_01182ECB_01186ECB_01185
ECOL409438 ECSE_1263ECSE_1262ECSE_1258ECSE_1259ECSE_1264ECSE_1257ECSE_1261ECSE_1260
ECOL405955 APECO1_330APECO1_329APECO1_324APECO1_325APECO1_331APECO1_323APECO1_328APECO1_327
ECOL364106 UTI89_C1407UTI89_C1406UTI89_C1402UTI89_C1403UTI89_C1408UTI89_C1401UTI89_C1405UTI89_C1404
ECOL362663 ECP_1261ECP_1260ECP_1256ECP_1257ECP_1262ECP_1255ECP_1259ECP_1258
ECOL331111 ECE24377A_1361ECE24377A_1360ECE24377A_1356ECE24377A_1357ECE24377A_1362ECE24377A_1355ECE24377A_1359ECE24377A_1358
ECOL316407 ECK1201:JW1204:B1213ECK1200:JW1203:B1212ECK1196:JW1199:B1208ECK1197:JW1200:B1209ECK1202:JW1205:B1214ECK1195:JW1198:B1207ECK1199:JW1202:B1211ECK1198:JW1201:B1210
ECOL199310 C1671C1670C1666C1667C1672C1665C1669C1668
ECAR218491 ECA2192ECA2191ECA2187ECA2188ECA2193ECA2186ECA2190ECA2189
DARO159087 DARO_0999DARO_3684DARO_3729DARO_3728DARO_3730DARO_3687DARO_3689
CVIO243365 CV_4078CV_3584CV_4059CV_4060CV_4058CV_0080CV_0079
CPSY167879 CPS_3550CPS_3551CPS_3556CPS_3555CPS_3549CPS_3557CPS_3552CPS_3554
CJAP155077 CJA_2198CJA_0653CJA_0646CJA_0647CJA_0644CJA_0652CJA_0651
BTHA271848 BTH_I2931BTH_I0476BTH_I0477BTH_I0737BTH_I0474BTH_I2930BTH_I2929
BSP36773 BCEP18194_A3596BCEP18194_A6131BCEP18194_A6130BCEP18194_A5881BCEP18194_A6132BCEP18194_A3597BCEP18194_A3598
BPSE320373 BURPS668_3591BURPS668_0571BURPS668_0572BURPS668_0922BURPS668_0569BURPS668_3590BURPS668_3589
BPSE320372 BURPS1710B_A3890BURPS1710B_A0797BURPS1710B_A0798BURPS1710B_A1136BURPS1710B_A0795BURPS1710B_A3889BURPS1710B_A3888
BPSE272560 BPSL3074BPSL0523BPSL0524BPSL0873BPSL0521BPSL3073BPSL3072
BMAL320389 BMA10247_A1944BMA10247_2932BMA10247_2933BMA10247_0128BMA10247_2930BMA10247_A1943BMA10247_A1942
BMAL320388 BMASAVP1_0677BMASAVP1_A0086BMASAVP1_A0085BMASAVP1_A0679BMASAVP1_A0088BMASAVP1_0676BMASAVP1_0675
BCEN331272 BCEN2424_0509BCEN2424_2801BCEN2424_2800BCEN2424_2549BCEN2424_2802BCEN2424_0510BCEN2424_0511
BCEN331271 BCEN_2596BCEN_2187BCEN_2186BCEN_1937BCEN_2188BCEN_2595BCEN_2593
BAMB398577 BAMMC406_0439BAMMC406_2719BAMMC406_2718BAMMC406_2468BAMMC406_2720BAMMC406_0440BAMMC406_0441
BAMB339670 BAMB_0413BAMB_2861BAMB_2860BAMB_2598BAMB_2862BAMB_0414BAMB_0415
ASP62928 AZO3083AZO0982AZO0756AZO0757AZO0755AZO0981AZO0980
ASAL382245 ASA_3988ASA_1176ASA_1172ASA_1173ASA_1170ASA_1175ASA_1174
APLE434271 APJL_0733APJL_2093APJL_0779APJL_0780APJL_2092APJL_0778APJL_2095APJL_0425
APLE416269 APL_0731APL_2042APL_0776APL_0777APL_2041APL_0775APL_2044APL_0404
AHYD196024 AHA_0341AHA_3148AHA_3152AHA_3151AHA_3146AHA_3154AHA_3149AHA_3150
AEHR187272 MLG_0094MLG_0272MLG_0282MLG_0281MLG_0283MLG_0278MLG_0279


Organism features enriched in list (features available for 128 out of the 134 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0002017892
Disease:Bubonic_plague 0.000102166
Disease:Dysentery 0.000102166
Disease:Gastroenteritis 0.00002801013
Endospores:No 8.427e-724211
GC_Content_Range4:0-40 3.149e-225213
GC_Content_Range4:40-60 2.496e-1385224
GC_Content_Range7:30-40 4.011e-155166
GC_Content_Range7:40-50 0.007179835117
GC_Content_Range7:50-60 1.066e-1050107
Genome_Size_Range5:0-2 9.425e-191155
Genome_Size_Range5:2-4 4.820e-819197
Genome_Size_Range5:4-6 2.914e-2388184
Genome_Size_Range5:6-10 0.00052402047
Genome_Size_Range9:1-2 7.327e-151128
Genome_Size_Range9:2-3 0.000664414120
Genome_Size_Range9:3-4 0.0000834577
Genome_Size_Range9:4-5 2.096e-84396
Genome_Size_Range9:5-6 2.698e-114588
Genome_Size_Range9:6-8 0.00001342038
Gram_Stain:Gram_Neg 1.808e-20116333
Habitat:Multiple 0.008769949178
Habitat:Specialized 0.0026989453
Motility:No 2.288e-108151
Motility:Yes 1.094e-1192267
Oxygen_Req:Anaerobic 4.021e-84102
Oxygen_Req:Facultative 9.318e-1277201
Pathogenic_in:No 2.674e-628226
Pathogenic_in:Plant 0.00018511015
Shape:Coccus 8.482e-7382
Shape:Rod 1.831e-12109347
Shape:Spiral 0.0016985134
Temp._range:Mesophilic 0.0029639114473
Temp._range:Psychrophilic 0.004197669



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 132
Effective number of orgs (counting one per cluster within 468 clusters): 117

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 71
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RCON272944 ncbi Rickettsia conorii Malish 71
RCAN293613 ncbi Rickettsia canadensis McKiel1
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97901
PRUM264731 ncbi Prevotella ruminicola 231
PMOB403833 ncbi Petrotoga mobilis SJ951
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
GFOR411154 ncbi Gramella forsetii KT08031
FSP1855 Frankia sp. EAN1pec1
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1351
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K11
ANAE240017 Actinomyces oris MG11
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G6630   EG12424   EG11294   EG11293   EG11251   EG10774   EG10761   EG10427   
WPIP80849 WB_0279
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX911
TVOL273116
TPEN368408
TPAL243276
TLET416591 TLET_0452
TKOD69014
TFUS269800 TFU_2733
TDEN243275 TDE_2489
TACI273075
STOK273063 ST0212
SSOL273057
SMAR399550
SCO SCO3319
SAVE227882 SAV4739
SACI330779 SACI_0777
RTYP257363 RT0836
RPRO272947 RP847
RCON272944 RC1314
RCAN293613 A1E_05430
RALB246199 GRAORF_1444
RAKA293614 A1C_06570
PTOR263820 PTO0918
PRUM264731 GFRORF0846
PMOB403833 PMOB_1453
PISL384616 PISL_0096
PINT246198 PIN_0277
PHOR70601
PGIN242619 PG_0074
PFUR186497
PDIS435591 BDI_0715
PAST100379
PARS340102 PARS_2261
PAER178306 PAE0601
PABY272844
OTSU357244 OTBS_0456
NSEN222891 NSE_0406
NPHA348780 NP4502A
MTHE349307 MTHE_0049
MTHE187420 MTH1012
MSYN262723
MSTA339860 MSP_1408
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632 MSC_0150
MMOB267748
MMAZ192952 MM1741
MMAR444158 MMARC6_0859
MMAR426368 MMARC7_1087
MMAR402880 MMARC5_1588
MMAR368407 MEMAR_0980
MMAR267377 MMP0088
MLAB410358 MLAB_0523
MKAN190192 MK0200
MJAN243232 MJ_0143
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2562
MGEN243273
MFLO265311
MCAP340047 MCAP_0144
MBUR259564 MBUR_1229
MBAR269797 MBAR_A1462
MART243272
MAEO419665 MAEO_0052
MACE188937 MA0577
LMES203120 LEUM_1783
LLAC272622 LACR_0614
LJOH257314 LJ_0209
LINT267671 LIC_10429
LINT189518 LA3821
LHEL405566 LHV_0240
LGAS324831 LGAS_0212
LDEL390333 LDB0350
LBOR355277 LBJ_2587
LBOR355276 LBL_0525
LBIF456481 LEPBI_I0236
LBIF355278 LBF_0229
LACI272621 LBA0224
IHOS453591 IGNI_0512
HWAL362976 HQ3336A
HSP64091 VNG1774G
HSAL478009 OE3496R
HMUK485914 HMUK_1612
HMAR272569 RRNAC1708
HBUT415426 HBUT_0206
GFOR411154 GFO_3223
FSP1855 FRANEAN1_6131
FNOD381764 FNOD_0604
FMAG334413
FJOH376686 FJOH_3752
ERUM302409 ERGA_CDS_04620
ERUM254945 ERWE_CDS_04720
CTRA471473 CTLON_0273
CTRA471472 CTL0278
CSUL444179
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMET456442 MBOO_1238
CMAQ397948 CMAQ_1730
CKOR374847
CJEI306537 JK1902
CGLU196627 CG0497
CFEL264202 CF0351
CEFF196164 CE0435
CDIP257309 DIP0400
BXEN266265
BTUR314724 BT0197
BTHE226186 BT_0624
BLON206672 BL1713
BHER314723 BH0197
BGAR290434 BG0194
BFRA295405 BF2589
BFRA272559 BF2610
BBUR224326 BB_0196
BAFZ390236 BAPKO_0198
AYEL322098
AURANTIMONAS
APER272557 APE2296
ANAE240017 ANA_1893
AMAR234826 AM493
ALAI441768 ACL_0018
AFUL224325 AF_1975
AAUR290340 AAUR_2756


Organism features enriched in list (features available for 123 out of the 132 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0004002892
Arrangment:Pairs 0.000812012112
Arrangment:Singles 0.004940772286
Disease:Leptospirosis 0.001905644
Endospores:No 1.164e-1177211
Endospores:Yes 0.0011081353
GC_Content_Range4:0-40 0.000152762213
GC_Content_Range4:60-100 0.000063915145
GC_Content_Range7:0-30 1.458e-62447
GC_Content_Range7:50-60 0.003833913107
GC_Content_Range7:60-70 0.000055013134
Genome_Size_Range5:0-2 1.643e-1569155
Genome_Size_Range5:4-6 6.782e-1210184
Genome_Size_Range9:0-1 1.932e-81927
Genome_Size_Range9:1-2 5.191e-850128
Genome_Size_Range9:4-5 0.0000139696
Genome_Size_Range9:5-6 3.120e-6488
Genome_Size_Range9:6-8 0.0051484238
Gram_Stain:Gram_Neg 2.729e-648333
Gram_Stain:Gram_Pos 0.000451918150
Habitat:Multiple 0.000180222178
Habitat:Specialized 0.00007092353
Optimal_temp.:- 0.009169044257
Optimal_temp.:100 0.009210533
Optimal_temp.:35-40 0.009210533
Optimal_temp.:85 0.001905644
Oxygen_Req:Anaerobic 1.298e-844102
Oxygen_Req:Facultative 0.002367830201
Pathogenic_in:Animal 0.0012927566
Pathogenic_in:Human 0.009261535213
Pathogenic_in:Ruminant 0.009210533
Salinity:Extreme_halophilic 0.005207057
Shape:Irregular_coccus 3.209e-91517
Shape:Rod 4.473e-847347
Shape:Sphere 3.537e-91619
Shape:Spiral 0.00914371334
Temp._range:Hyperthermophilic 2.899e-91823
Temp._range:Mesophilic 0.000112585473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120860.5962
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181190.5906
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951120.5902
GLYCOCAT-PWY (glycogen degradation I)2461260.5841
GALACTITOLCAT-PWY (galactitol degradation)73600.5381
GLUCONSUPER-PWY (D-gluconate degradation)2291130.5165
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911020.5161
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176970.5132
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001300.5119
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81610.5062
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491170.5060
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491170.5060
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149870.5032
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251100.5010
PWY-5918 (heme biosynthesis I)2721220.5001
PWY0-1182 (trehalose degradation II (trehalase))70550.4941
PWY-5386 (methylglyoxal degradation I)3051280.4876
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901240.4826
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911240.4808
PWY-5148 (acyl-CoA hydrolysis)2271080.4804
PWY0-981 (taurine degradation IV)106690.4803
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96650.4799
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961250.4798
PWY-4041 (γ-glutamyl cycle)2791210.4791
PWY-1269 (CMP-KDO biosynthesis I)3251310.4778
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861220.4742
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391310.4556
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50420.4493
GLUCARDEG-PWY (D-glucarate degradation I)152820.4485
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481310.4417
PWY-6196 (serine racemization)102630.4335
PWY-5913 (TCA cycle variation IV)3011200.4320
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94590.4233
LIPASYN-PWY (phospholipases)212960.4156
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291230.4088
PWY-46 (putrescine biosynthesis III)138730.4075
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135720.4074
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91560.4029
THREONINE-DEG2-PWY (threonine degradation II)214950.4029
LACTOSEUTIL-PWY (lactose degradation II)53400.4005
PWY-6134 (tyrosine biosynthesis IV)89550.4003
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183860.4000



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12424   EG11294   EG11293   EG11251   EG10774   EG10761   EG10427   
G66300.9990210.9987930.9988730.9991510.998720.9988630.998798
EG124240.9993380.9994730.9992580.9993380.9999920.999704
EG112940.9998360.9986810.9998980.9994430.999382
EG112930.9988470.999770.9995520.999623
EG112510.998640.9991710.998766
EG107740.9993670.999369
EG107610.999805
EG10427



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PAIRWISE BLAST SCORES:

  G6630   EG12424   EG11294   EG11293   EG11251   EG10774   EG10761   EG10427   
G66300.0f0-------
EG12424-0.0f0------
EG11294--0.0f0-----
EG11293---0.0f0----
EG11251----0.0f0---
EG10774-----0.0f0--
EG10761------0.0f0-
EG10427-------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10427 EG10761 EG10774 EG11251 EG11293 EG11294 EG12424 G6630 (centered at EG10761)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6630   EG12424   EG11294   EG11293   EG11251   EG10774   EG10761   EG10427   
98/623416/623418/623168/623144/623414/623415/623406/623
AAEO224324:0:Tyes-0572---543830
AAUR290340:2:Tyes-------0
AAVE397945:0:Tyes-24522399-0240024512450
ABAC204669:0:Tyes-31613233-03231-1234
ABAU360910:0:Tyes-2237236-23910
ABOR393595:0:Tyes-723-065
ABUT367737:0:Tyes-----3970302
ACAU438753:0:Tyes-513---0512-
ACEL351607:0:Tyes-4590----56
ACRY349163:8:Tyes-7762433--0775-
ADEH290397:0:Tyes-2442--0-2391
AEHR187272:0:Tyes0176186185-187182183
AFER243159:0:Tyes-612-054
AFUL224325:0:Tyes-------0
AHYD196024:0:Tyes02750275427532748275527512752
ALAI441768:0:Tyes-----0--
AMAR234826:0:Tyes--0-----
AMAR329726:9:Tyes--935-33740-4905
AMET293826:0:Tyes-2594493--932600
ANAE240017:0:Tyes--0-----
AORE350688:0:Tyes-23630--242723621037
APER272557:0:Tyes-------0
APHA212042:0:Tyes-5860-----
APLE416269:0:Tyes3251677372373167637116790
APLE434271:0:Tno2841694334335169333316960
ASAL382245:5:Tyes2713623-054
ASP1667:3:Tyes--0----1575
ASP232721:2:Tyes-047-20774512
ASP62928:0:Tyes236923323-0232231
ASP62977:0:Tyes-0443442-4491440
ASP76114:2:Tyes23460147--14912
AVAR240292:3:Tyes-03411-1142511-2218
BABO262698:1:Tno-13790--10571380-
BAFZ390236:2:Fyes------0-
BAMB339670:3:Tno-0251325122249251512
BAMB398577:3:Tno-0231423132063231612
BAMY326423:0:Tyes--0---33562463
BANT260799:0:Tno-51970--551984363
BANT261594:2:Tno-51090--651104289
BANT568206:2:Tyes-53730--653744528
BANT592021:2:Tno-53630--653644518
BAPH198804:0:Tyes-31-402-
BAPH372461:0:Tyes-2--301-
BBAC264462:0:Tyes-0---2433--
BBAC360095:0:Tyes-029--6001-
BBRO257310:0:Tyes-2519518-52110
BBUR224326:21:Fno------0-
BCAN483179:1:Tno-14600--11331461-
BCEN331271:2:Tno-6622502490252661659
BCEN331272:3:Tyes-0228822872036228912
BCER226900:1:Tyes-51700--551714338
BCER288681:0:Tno--0--550614224
BCER315749:1:Tyes-36210--536222990
BCER405917:1:Tyes-51390--551404281
BCER572264:1:Tno--0--652134350
BCIC186490:0:Tyes-032-41-
BCLA66692:0:Tyes-38600--538612623
BFRA272559:1:Tyes--0-----
BFRA295405:0:Tno--0-----
BGAR290434:2:Fyes------0-
BHAL272558:0:Tyes--0--538043074
BHEN283166:0:Tyes-0214--9251-
BHER314723:0:Fyes-0------
BJAP224911:0:Fyes-12329--72800-
BLIC279010:0:Tyes--0---37662807
BLON206672:0:Tyes-0------
BMAL243160:0:Tno-0----12
BMAL243160:1:Tno--10-2--
BMAL320388:0:Tno-2----10
BMAL320388:1:Tno--105882--
BMAL320389:0:Tyes-2----10
BMAL320389:1:Tyes--2742274302741--
BMEL224914:1:Tno-11384--3100-
BMEL359391:1:Tno-13320--10321333-
BOVI236:1:Tyes-12500--9701251-
BPAR257311:0:Tno-2414413-41610
BPER257313:0:Tyes-222172218-221510
BPET94624:0:Tyes-53923-0540541
BPSE272560:1:Tyes-256934352025682567
BPSE320372:1:Tno-296412339029632962
BPSE320373:1:Tno-291012342029092908
BPUM315750:0:Tyes-33530--533542450
BQUI283165:0:Tyes-0121--1271-
BSP107806:2:Tyes-31-402-
BSP36773:2:Tyes-0258125802330258312
BSP376:0:Tyes-01375--51641-
BSUB:0:Tyes-38790--538802950
BSUI204722:1:Tyes-14250--11061426-
BSUI470137:1:Tno-12490--11341250-
BTHA271848:1:Tno-240812261024072406
BTHE226186:0:Tyes--0-----
BTHU281309:1:Tno--0--549244118
BTHU412694:1:Tno-46420--546433887
BTRI382640:1:Tyes-0376--4581-
BTUR314724:0:Fyes-0------
BVIE269482:7:Tyes-02395-2132239612
BWEI315730:4:Tyes--0--550994268
CABO218497:0:Tyes--153---0-
CACE272562:1:Tyes-28212837--316228200
CAULO:0:Tyes-391864--0372-
CBEI290402:0:Tyes-319310--03201191
CBLO203907:0:Tyes-31--02-
CBLO291272:0:Tno-412-03-
CBOT36826:1:Tno-170--338518-
CBOT441770:0:Tyes-170--334418-
CBOT441771:0:Tno-180--320819-
CBOT441772:1:Tno-170--342218-
CBOT498213:1:Tno-170--343918-
CBOT508765:1:Tyes-291280--02922687
CBOT515621:2:Tyes-170--358518-
CBOT536232:0:Tno-170--369418-
CBUR227377:1:Tyes-130-0-1131132
CBUR360115:1:Tno-2-1804-180610
CBUR434922:2:Tno-1916-0-119171918
CCAV227941:1:Tyes--154---0-
CCHL340177:0:Tyes-272182--0-366
CCON360104:2:Tyes-----13450793
CCUR360105:0:Tyes-1100---143701044
CDES477974:0:Tyes-20590--1120611252
CDIF272563:1:Tyes-185--310-
CDIP257309:0:Tyes-------0
CEFF196164:0:Fyes-------0
CFEL264202:1:Tyes------0-
CFET360106:0:Tyes-----77110090
CGLU196627:0:Tyes-------0
CHOM360107:1:Tyes-----3577010
CHUT269798:0:Tyes----417-33190
CHYD246194:0:Tyes-22990--52300992
CJAP155077:0:Tyes1499812-076
CJEI306537:0:Tyes-------0
CJEJ192222:0:Tyes-----35410370
CJEJ195099:0:Tno-----33310950
CJEJ354242:2:Tyes-----34610020
CJEJ360109:0:Tyes-----01004461
CJEJ407148:0:Tno-----36210320
CKLU431943:1:Tyes-35003515--03499494
CMAQ397948:0:Tyes-------0
CMET456442:0:Tyes-------0
CMIC31964:2:Tyes-0-----1292
CMIC443906:2:Tyes-586-----0
CMUR243161:1:Tyes--0---105-
CNOV386415:0:Tyes-19041921--019031654
CPEL335992:0:Tyes-431---0--
CPER195102:1:Tyes-781790--11227800
CPER195103:0:Tno-753762--10487520
CPER289380:3:Tyes-732741--10057310
CPHY357809:0:Tyes-03349---1946
CPRO264201:0:Fyes-3131268---3120
CPSY167879:0:Tyes12760835
CRUT413404:0:Tyes-6302--0575574
CSAL290398:0:Tyes-723-065
CSP501479:7:Fyes--0--713--
CSP501479:8:Fyes-0----1-
CSP78:2:Tyes-316---0309-
CTEP194439:0:Tyes-13441352--121801283
CTET212717:0:Tyes-10589--0106489
CTRA471472:0:Tyes------0-
CTRA471473:0:Tno------0-
CVES412965:0:Tyes-5821--0540539
CVIO243365:0:Tyes4104360140844085-408210
DARO159087:0:Tyes0269627412740-274326992701
DDES207559:0:Tyes-970---1029690
DETH243164:0:Tyes-7730-----
DGEO319795:1:Tyes-0112----2051
DHAF138119:0:Tyes-4832---048332114
DNOD246195:0:Tyes-6---053
DOLE96561:0:Tyes-12375--237702803
DPSY177439:2:Tyes-012--91359
DRAD243230:3:Tyes-02317----2260
DRED349161:0:Tyes-31080--631092092
DSHI398580:5:Tyes-01355--12121-
DSP216389:0:Tyes-6610-----
DSP255470:0:Tno-6810-----
DVUL882:1:Tyes-1447---11414450
ECAN269484:0:Tyes--0---130-
ECAR218491:0:Tyes65127043
ECHA205920:0:Tyes--147---0-
ECOL199310:0:Tno65127043
ECOL316407:0:Tno65127043
ECOL331111:6:Tno65127043
ECOL362663:0:Tno65127043
ECOL364106:1:Tno65127043
ECOL405955:2:Tyes65127043
ECOL409438:6:Tyes65127043
ECOL413997:0:Tno65127043
ECOL439855:4:Tno12650734
ECOL469008:0:Tno12650734
ECOL481805:0:Tno12650734
ECOL585034:0:Tno65127043
ECOL585035:0:Tno65127043
ECOL585055:0:Tno65127043
ECOL585056:2:Tno65127043
ECOL585057:0:Tno65127043
ECOL585397:0:Tno65127043
ECOL83334:0:Tno65127043
ECOLI:0:Tno65127043
ECOO157:0:Tno65127043
EFAE226185:3:Tyes-23450--29182346-
EFER585054:1:Tyes-2650734
ELIT314225:0:Tyes-14870--13911486-
ERUM254945:0:Tyes------0-
ERUM302409:0:Tno------0-
ESP42895:1:Tyes12650734
FALN326424:0:Tyes-4843-----0
FJOH376686:0:Tyes-------0
FNOD381764:0:Tyes-----0--
FNUC190304:0:Tyes-685----6860
FPHI484022:1:Tyes-41101-937410409
FRANT:0:Tno-29392-46810
FSP106370:0:Tyes-3227-----0
FSP1855:0:Tyes-------0
FSUC59374:0:Tyes--2619----0
FTUL351581:0:Tno-139010-70813911392
FTUL393011:0:Tno-125610-65412571258
FTUL393115:0:Tyes-29190-46010
FTUL401614:0:Tyes-138710-85613881389
FTUL418136:0:Tno-213101309-68010
FTUL458234:0:Tno-130510-69413061307
GBET391165:0:Tyes-21242--17080-
GFOR411154:0:Tyes-------0
GKAU235909:1:Tyes--0---34432694
GMET269799:1:Tyes-12479--247702860
GOXY290633:5:Tyes-01515--9292-
GSUL243231:0:Tyes-24320--124332611
GTHE420246:1:Tyes--0--532362495
GURA351605:0:Tyes-36743303--330136750
GVIO251221:0:Tyes-16740-2420807-1125
HACI382638:1:Tyes-----0776643
HARS204773:0:Tyes11760255125502132255223
HAUR316274:2:Tyes-0-----3300
HBUT415426:0:Tyes-------0
HCHE349521:0:Tyes3371823-076
HDUC233412:0:Tyes439167367426720-
HHAL349124:0:Tyes14201123-065
HHEP235279:0:Tyes-----0241190
HINF281310:0:Tyes-126121270124-
HINF374930:0:Tyes-153520543-
HINF71421:0:Tno-148470493-
HMAR272569:8:Tyes-------0
HMOD498761:0:Tyes-0346--35711068
HMUK485914:1:Tyes-------0
HNEP81032:0:Tyes-266313--0263-
HPY:0:Tno-----6680162
HPYL357544:1:Tyes-----6540166
HPYL85963:0:Tno-----5970148
HSAL478009:4:Tyes-------0
HSOM205914:1:Tyes-1391881891381871410
HSOM228400:0:Tno-1431951961421941450
HSP64091:2:Tno-------0
HWAL362976:1:Tyes-------0
IHOS453591:0:Tyes-------0
ILOI283942:0:Tyes0265-734
JSP290400:1:Tyes-13290--5701328-
JSP375286:0:Tyes-0296029592352296223
KPNE272620:2:Tyes12650734
KRAD266940:2:Fyes--0----434
LACI272621:0:Tyes-----0--
LBIF355278:2:Tyes-----0--
LBIF456481:2:Tno-----0--
LBOR355276:1:Tyes-----0--
LBOR355277:1:Tno-----0--
LBRE387344:2:Tyes-7770--16778-
LCAS321967:1:Tyes--1397--13910-
LCHO395495:0:Tyes299902941-94294312
LDEL321956:0:Tyes-----0292-
LDEL390333:0:Tyes-----0--
LGAS324831:0:Tyes-----0--
LHEL405566:0:Tyes-----0--
LINN272626:1:Tno--0---25171375
LINT189518:1:Tyes-----0--
LINT267671:1:Tno-----0--
LINT363253:3:Tyes-621----0319
LJOH257314:0:Tyes-----0--
LLAC272622:5:Tyes-0------
LLAC272623:0:Tyes-0---216--
LMES203120:1:Tyes-0------
LMON169963:0:Tno--0---24211383
LMON265669:0:Tyes--0---22941366
LPLA220668:0:Tyes-16580--71659-
LPNE272624:0:Tno-1791-4-017901789
LPNE297245:1:Fno-1673-2-016721671
LPNE297246:1:Fyes-1683-2-016821681
LPNE400673:0:Tno-2-932-93510
LREU557436:0:Tyes-2480--62471536
LSAK314315:0:Tyes-0532--526--
LSPH444177:1:Tyes-9650---9643797
LWEL386043:0:Tyes--0---23331411
LXYL281090:0:Tyes-4501351----0
MABS561007:1:Tyes-3050----2872
MACE188937:0:Tyes-------0
MAEO419665:0:Tyes-------0
MAER449447:0:Tyes--0-54151920-2566
MAQU351348:2:Tyes783054-612
MAVI243243:0:Tyes--0----3447
MBAR269797:1:Tyes-------0
MBOV233413:0:Tno--526----0
MBOV410289:0:Tno--524----0
MBUR259564:0:Tyes-------0
MCAP243233:0:Tyes-054-612
MCAP340047:0:Tyes------0-
MEXT419610:0:Tyes-02172--29281-
MFLA265072:0:Tyes-179512-017931792
MGIL350054:3:Tyes-22451870----0
MHUN323259:0:Tyes-------0
MJAN243232:2:Tyes-------0
MKAN190192:0:Tyes-------0
MLAB410358:0:Tyes-------0
MLEP272631:0:Tyes--0----1314
MLOT266835:2:Tyes-5843803--0585-
MMAG342108:0:Tyes-22818-2888-10
MMAR267377:0:Tyes-------0
MMAR368407:0:Tyes-------0
MMAR394221:0:Tyes-11539--1130-
MMAR402880:1:Tyes-------0
MMAR426368:0:Tyes-------0
MMAR444158:0:Tyes-------0
MMAZ192952:0:Tyes-------0
MMYC272632:0:Tyes------0-
MPET420662:1:Tyes116702701-2495270012
MSME246196:0:Tyes--4445----0
MSP164756:1:Tno--3603----0
MSP164757:0:Tno--3963----0
MSP189918:2:Tyes--3670----0
MSP266779:3:Tyes-23050--14712306-
MSP400668:0:Tyes-054-612
MSP409:2:Tyes-19250--32111924-
MSTA339860:0:Tyes-------0
MSUC221988:0:Tyes288135635503572140
MTBCDC:0:Tno--548----0
MTBRV:0:Tno--512----0
MTHE187420:0:Tyes-------0
MTHE264732:0:Tyes-22670--422681153
MTHE349307:0:Tyes-------0
MTUB336982:0:Tno--510----0
MTUB419947:0:Tyes--526----0
MVAN350058:0:Tyes-34673927----0
MXAN246197:0:Tyes-2840--03002-672
NARO279238:0:Tyes-01507--6891-
NEUR228410:0:Tyes0418332333-330419420
NEUT335283:2:Tyes8442308307-31010
NFAR247156:2:Tyes--0----274
NGON242231:0:Tyes01552110--111916977
NHAM323097:2:Tyes-02635--25121-
NMEN122586:0:Tno1681434294--29510690
NMEN122587:0:Tyes5530678677-6821493367
NMEN272831:0:Tno1721337277--2789440
NMEN374833:0:Tno5780699--7031455392
NMUL323848:3:Tyes1476203210-220332034
NOCE323261:1:Tyes19520117116-119113114
NPHA348780:2:Tyes-------0
NSEN222891:0:Tyes------0-
NSP103690:6:Tyes--3237-04692-1027
NSP35761:1:Tyes--3355----0
NSP387092:0:Tyes-----3530952
NWIN323098:0:Tyes-02242--21501-
OANT439375:5:Tyes-5220--1141521-
OCAR504832:0:Tyes-12860--30970-
OIHE221109:0:Tyes-30290--430302096
OTSU357244:0:Fyes------0-
PACN267747:0:Tyes--219----0
PAER178306:0:Tyes-------0
PAER208963:0:Tyes-3438344334420344534393440
PAER208964:0:Tno-1258126312620126512591260
PARC259536:0:Tyes-106434-08846
PARS340102:0:Tyes-------0
PATL342610:0:Tyes13760945
PCAR338963:0:Tyes-6912--06921065
PCRY335284:1:Tyes-9691--012214
PDIS435591:0:Tyes--0-----
PENT384676:0:Tyes-1723353801615
PFLU205922:0:Tyes-3877388238810388438783879
PFLU216595:1:Tyes-612292054
PFLU220664:0:Tyes-4128413341320413441294130
PGIN242619:0:Tyes------0-
PHAL326442:1:Tyes65127043
PING357804:0:Tyes-652126540651650
PINT246198:0:Tyes--0-----
PISL384616:0:Tyes-------0
PLUM243265:0:Fyes-5126043
PLUT319225:0:Tyes--155--0-85
PMAR146891:0:Tyes--98--356-0
PMAR167539:0:Tyes--0--358-78
PMAR167540:0:Tyes-0631--780-463
PMAR167542:0:Tyes-0686--845-481
PMAR167546:0:Tyes--100--362-0
PMAR167555:0:Tyes--144----0
PMAR59920:0:Tno--107----0
PMAR74546:0:Tyes--92----0
PMAR74547:0:Tyes--53--509-0
PMAR93060:0:Tyes--97--358-0
PMEN399739:0:Tyes-8342228076
PMOB403833:0:Tyes-----0--
PMUL272843:1:Tyes-312123130311440
PNAP365044:8:Tyes5630127-224712512
PPEN278197:0:Tyes-10020--24--
PPRO298386:2:Tyes12650734
PPUT160488:0:Tno-1212388501110
PPUT351746:0:Tyes-7233738065
PPUT76869:0:Tno-10233870098
PRUM264731:0:Tyes--0-----
PSP117:0:Tyes-0-----294
PSP296591:2:Tyes38490444-270744212
PSP312153:0:Tyes-01805-1643180712
PSP56811:2:Tyes-147518221821-182511540
PSTU379731:0:Tyes-054-812
PSYR205918:0:Tyes-72384065
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