CANDIDATE ID: 224

CANDIDATE ID: 224

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9908986e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.2500000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- G7423 (ispD) (b2747)
   Products of gene:
     - G7423-MONOMER (4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer)
     - CPLX0-234 (4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
       Reactions:
        2-C-methyl-D-erythritol-4-phosphate + CTP + H+  =  4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + diphosphate
         In pathways
         PWY-5121 (PWY-5121)
         PWY-6270 (PWY-6270)
         NONMEVIPP-PWY (methylerythritol phosphate pathway)

- G7409 (ygaD) (b2700)
   Products of gene:
     - G7409-MONOMER (conserved protein)

- G7358 (yfjG) (b2619)
   Products of gene:
     - G7358-MONOMER (toxin of a putative toxin-antitoxin pair)

- EG12022 (dusC) (b2140)
   Products of gene:
     - EG12022-MONOMER (tRNA dihydrouridine synthase)
       Reactions:
        a tRNA  ->  tRNA containing 5,6-dihydrouridine

- EG11816 (ispF) (b2746)
   Products of gene:
     - EG11816-MONOMER (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer)
     - CPLX0-721 (2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase)
       Reactions:
        2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol  ->  CMP + 2-C-methyl-D-erythritol-2,4-cyclodiphosphate
         In pathways
         PWY-5121 (PWY-5121)
         PWY-6270 (PWY-6270)
         NONMEVIPP-PWY (methylerythritol phosphate pathway)

- EG11645 (ydeJ) (b1537)
   Products of gene:
     - EG11645-MONOMER (conserved protein)

- EG11311 (dusB) (b3260)
   Products of gene:
     - EG11311-MONOMER (tRNA dihydrouridine synthase)
       Reactions:
        a tRNA  ->  tRNA containing 5,6-dihydrouridine

- EG10387 (glnL) (b3869)
   Products of gene:
     - PROTEIN-NRIIP (NtrB-P)
     - PROTEIN-NRII (NtrB)
       Regulatees:
     - GLNL-CPLX (NtrB)



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 211
Effective number of orgs (counting one per cluster within 468 clusters): 152

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM47
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A8
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110188
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103318
XCAM487884 Xanthomonas campestris pv. paulliniae8
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-108
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80048
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339138
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3068
XAUT78245 ncbi Xanthobacter autotrophicus Py28
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
VCHO345073 ncbi Vibrio cholerae O3958
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169618
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252598
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
SSP94122 ncbi Shewanella sp. ANA-38
SSP644076 Silicibacter sp. TrichCH4B8
SSP292414 ncbi Ruegeria sp. TM10408
SSON300269 ncbi Shigella sonnei Ss0468
SSED425104 ncbi Shewanella sediminis HAW-EB38
SPRO399741 ncbi Serratia proteamaculans 5688
SPEA398579 ncbi Shewanella pealeana ATCC 7003458
SONE211586 ncbi Shewanella oneidensis MR-18
SMEL266834 ncbi Sinorhizobium meliloti 10218
SMED366394 ncbi Sinorhizobium medicae WSM4198
SLOI323850 ncbi Shewanella loihica PV-48
SLAC55218 Ruegeria lacuscaerulensis8
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SHAL458817 ncbi Shewanella halifaxensis HAW-EB48
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB7
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1978
SDEN318161 ncbi Shewanella denitrificans OS2178
SDEG203122 ncbi Saccharophagus degradans 2-408
SBOY300268 ncbi Shigella boydii Sb2278
SBAL402882 ncbi Shewanella baltica OS1858
SBAL399599 ncbi Shewanella baltica OS1958
SALA317655 ncbi Sphingopyxis alaskensis RB22567
SACI56780 ncbi Syntrophus aciditrophicus SB7
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170258
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170298
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.18
RSOL267608 ncbi Ralstonia solanacearum GMI10008
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111708
RPOM246200 ncbi Ruegeria pomeroyi DSS-37
RPAL316058 ncbi Rhodopseudomonas palustris HaA28
RPAL316057 ncbi Rhodopseudomonas palustris BisB58
RPAL316056 ncbi Rhodopseudomonas palustris BisB188
RPAL316055 ncbi Rhodopseudomonas palustris BisA538
RPAL258594 ncbi Rhodopseudomonas palustris CGA0098
RMET266264 ncbi Ralstonia metallidurans CH348
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38418
RFER338969 ncbi Rhodoferax ferrireducens T1188
REUT381666 ncbi Ralstonia eutropha H168
REUT264198 ncbi Ralstonia eutropha JMP1348
RETL347834 ncbi Rhizobium etli CFN 428
RDEN375451 ncbi Roseobacter denitrificans OCh 1148
PTHE370438 ncbi Pelotomaculum thermopropionicum SI7
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30008
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a8
PSTU379731 ncbi Pseudomonas stutzeri A15018
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-18
PSP296591 ncbi Polaromonas sp. JS6668
PPUT76869 ncbi Pseudomonas putida GB-18
PPUT351746 ncbi Pseudomonas putida F18
PPUT160488 ncbi Pseudomonas putida KT24408
PPRO298386 ncbi Photobacterium profundum SS98
PNAP365044 ncbi Polaromonas naphthalenivorans CJ28
PMEN399739 ncbi Pseudomonas mendocina ymp8
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO18
PING357804 ncbi Psychromonas ingrahamii 378
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1258
PFLU220664 ncbi Pseudomonas fluorescens Pf-58
PFLU216595 ncbi Pseudomonas fluorescens SBW258
PFLU205922 ncbi Pseudomonas fluorescens Pf0-18
PENT384676 ncbi Pseudomonas entomophila L488
PCAR338963 ncbi Pelobacter carbinolicus DSM 23807
PATL342610 ncbi Pseudoalteromonas atlantica T6c8
PAER208964 ncbi Pseudomonas aeruginosa PAO18
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA148
OCAR504832 ncbi Oligotropha carboxidovorans OM57
OANT439375 ncbi Ochrobactrum anthropi ATCC 491888
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2558
NMUL323848 ncbi Nitrosospira multiformis ATCC 251967
NMEN374833 ncbi Neisseria meningitidis 0534427
NMEN272831 ncbi Neisseria meningitidis FAM187
NMEN122587 ncbi Neisseria meningitidis Z24917
NMEN122586 ncbi Neisseria meningitidis MC587
NHAM323097 ncbi Nitrobacter hamburgensis X148
NGON242231 ncbi Neisseria gonorrhoeae FA 10907
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197187
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124448
MTHE264732 ncbi Moorella thermoacetica ATCC 390737
MSP409 Methylobacterium sp.8
MSP400668 ncbi Marinomonas sp. MWYL18
MSP266779 ncbi Chelativorans sp. BNC18
MPET420662 ncbi Methylibium petroleiphilum PM18
MMAR394221 ncbi Maricaulis maris MCS107
MMAG342108 ncbi Magnetospirillum magneticum AMB-17
MLOT266835 ncbi Mesorhizobium loti MAFF3030997
MFLA265072 ncbi Methylobacillus flagellatus KT8
MEXT419610 ncbi Methylobacterium extorquens PA18
MCAP243233 ncbi Methylococcus capsulatus Bath8
MAQU351348 ncbi Marinobacter aquaeolei VT88
LCHO395495 ncbi Leptothrix cholodnii SP-68
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
JSP375286 ncbi Janthinobacterium sp. Marseille7
JSP290400 ncbi Jannaschia sp. CCS18
ILOI283942 ncbi Idiomarina loihiensis L2TR8
HNEP81032 Hyphomonas neptunium7
HMOD498761 ncbi Heliobacterium modesticaldum Ice17
HCHE349521 ncbi Hahella chejuensis KCTC 23968
HARS204773 ncbi Herminiimonas arsenicoxydans7
GURA351605 ncbi Geobacter uraniireducens Rf47
GSUL243231 ncbi Geobacter sulfurreducens PCA7
GMET269799 ncbi Geobacter metallireducens GS-157
GBET391165 ncbi Granulibacter bethesdensis CGDNIH18
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DSHI398580 ncbi Dinoroseobacter shibae DFL 128
DRED349161 ncbi Desulfotomaculum reducens MI-17
DOLE96561 ncbi Desulfococcus oleovorans Hxd37
DHAF138119 ncbi Desulfitobacterium hafniense Y517
DARO159087 ncbi Dechloromonas aromatica RCB8
CVIO243365 ncbi Chromobacterium violaceum ATCC 124728
CSP78 Caulobacter sp.8
CSP501479 Citreicella sp. SE458
CSAL290398 ncbi Chromohalobacter salexigens DSM 30438
CPSY167879 ncbi Colwellia psychrerythraea 34H8
CJAP155077 Cellvibrio japonicus8
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29017
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C7
CAULO ncbi Caulobacter crescentus CB158
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHA271848 ncbi Burkholderia thailandensis E2648
BSUI204722 ncbi Brucella suis 13307
BSP376 Bradyrhizobium sp.8
BSP36773 Burkholderia sp.7
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE272560 ncbi Burkholderia pseudomallei K962437
BPET94624 Bordetella petrii7
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128227
BOVI236 Brucella ovis8
BMEL359391 ncbi Brucella melitensis biovar Abortus 23088
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M8
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1108
BFRA295405 ncbi Bacteroides fragilis YCH467
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BCAN483179 ncbi Brucella canis ATCC 233658
BBRO257310 ncbi Bordetella bronchiseptica RB507
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9418
AVAR240292 ncbi Anabaena variabilis ATCC 294137
ASP76114 ncbi Aromatoleum aromaticum EbN17
ASP62928 ncbi Azoarcus sp. BH728
ASP232721 ncbi Acidovorax sp. JS428
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4498
AORE350688 ncbi Alkaliphilus oremlandii OhILAs7
AMET293826 ncbi Alkaliphilus metalliredigens QYMF7
AHYD196024 Aeromonas hydrophila dhakensis8
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ACRY349163 ncbi Acidiphilium cryptum JF-57
ACAU438753 ncbi Azorhizobium caulinodans ORS 5718
ABOR393595 ncbi Alcanivorax borkumensis SK27
ABAU360910 ncbi Bordetella avium 197N7
AAVE397945 ncbi Acidovorax citrulli AAC00-18


Names of the homologs of the genes in the group in each of these orgs
  G7423   G7409   G7358   EG12022   EG11816   EG11645   EG11311   EG10387   
ZMOB264203 ZMO1128ZMO1130ZMO1131ZMO1127ZMO1128ZMO1130ZMO1127
YPSE349747 YPSIP31758_3299YPSIP31758_3241YPSIP31758_2892YPSIP31758_2808YPSIP31758_3298YPSIP31758_3241YPSIP31758_0386YPSIP31758_0026
YPSE273123 YPTB0770YPTB0822YPTB1136YPTB1216YPTB0771YPTB0822YPTB3576YPTB0023
YPES386656 YPDSF_2999YPDSF_3053YPDSF_2595YPDSF_2522YPDSF_3000YPDSF_3053YPDSF_0261YPDSF_3881
YPES377628 YPN_0732YPN_0786YPN_2896YPN_2803YPN_0733YPN_0786YPN_3517YPN_0250
YPES360102 YPA_2782YPA_2837YPA_0580YPA_0885YPA_2783YPA_2837YPA_3667YPA_3519
YPES349746 YPANGOLA_A0964YPANGOLA_A0902YPANGOLA_A1373YPANGOLA_A1355YPANGOLA_A0963YPANGOLA_A0902YPANGOLA_A1211YPANGOLA_A0028
YPES214092 YPO3361YPO3308YPO1102YPO1175YPO3360YPO3308YPO3655YPO0023
YPES187410 Y0828Y0880Y3078Y3015Y0829Y0880Y0213Y3805
YENT393305 YE0769YE0828YE0995YE2886YE0770YE0828YE3816YE0026
XORY360094 XOOORF_1707XOOORF_1723XOOORF_2978XOOORF_1119XOOORF_1708XOOORF_1723XOOORF_1119XOOORF_0296
XORY342109 XOO2812XOO2796XOO1905XOO3567XOO2811XOO2796XOO3567XOO4225
XORY291331 XOO2961XOO2944XOO2024XOO3787XOO2960XOO2944XOO3787XOO4484
XCAM487884 XCC-B100_2557XCC-B100_2541XCC-B100_2806XCC-B100_3590XCC-B100_2556XCC-B100_2541XCC-B100_3590XCC-B100_0208
XCAM316273 XCAORF_1938XCAORF_1954XCAORF_1727XCAORF_0941XCAORF_1939XCAORF_1954XCAORF_0941XCAORF_4341
XCAM314565 XC_2529XC_2513XC_2770XC_3469XC_2528XC_2513XC_3469XC_0197
XCAM190485 XCC1702XCC1718XCC1467XCC0763XCC1703XCC1718XCC0763XCC0188
XAXO190486 XAC1721XAC1737XAC1514XAC0816XAC1722XAC1737XAC0816XAC0207
XAUT78245 XAUT_4402XAUT_4307XAUT_3898XAUT_4401XAUT_4402XAUT_4307XAUT_4401XAUT_4400
VVUL216895 VV1_1582VV1_1590VV1_0370VV1_2229VV1_1583VV1_1590VV1_1232VV1_0891
VVUL196600 VV2816VV2807VV0819VV2126VV2814VV2807VV3138VV0197
VPAR223926 VP2559VP2551VP0645VP2075VP2558VP2551VP2884VP0119
VEIS391735 VEIS_4360VEIS_0581VEIS_3902VEIS_4361VEIS_0581VEIS_3027VEIS_3152
VCHO345073 VC0395_A0056VC0395_A0069VC0395_A0375VC0395_A0624VC0395_A0057VC0395_A0069VC0395_A2686VC0395_A2320
VCHO VC0528VC0542VC0849VC1105VC0529VC0542VC0291VC2748
TDEN292415 TBD_1003TBD_2195TBD_1755TBD_2456TBD_1004TBD_2195TBD_2456TBD_2501
STYP99287 STM2930STM2830STM2687STM2174STM2929STM1514STM3384STM4006
SSP94122 SHEWANA3_1118SHEWANA3_3908SHEWANA3_2951SHEWANA3_2452SHEWANA3_1119SHEWANA3_3908SHEWANA3_0399SHEWANA3_0259
SSP644076 SCH4B_2279SCH4B_2277SCH4B_2276SCH4B_2280SCH4B_2279SCH4B_2277SCH4B_2280SCH4B_2281
SSP292414 TM1040_1364TM1040_1366TM1040_1367TM1040_1363TM1040_1364TM1040_1366TM1040_1363TM1040_1362
SSON300269 SSO_2895SSO_2844SSO_2744SSO_2196SSO_2894SSO_1591SSO_3401SSO_4041
SSED425104 SSED_1292SSED_4280SSED_1408SSED_2859SSED_1293SSED_4280SSED_4118SSED_0283
SPRO399741 SPRO_0826SPRO_0840SPRO_3689SPRO_1337SPRO_0827SPRO_0840SPRO_4423SPRO_4882
SPEA398579 SPEA_1187SPEA_0223SPEA_1283SPEA_1501SPEA_1188SPEA_0223SPEA_0390SPEA_3929
SONE211586 SO_3438SO_0272SO_1474SO_2006SO_3437SO_0272SO_0394SO_4471
SMEL266834 SMC01040SMC01039SMC01038SMC01041SMC01040SMC01039SMC01041SMC01042
SMED366394 SMED_1087SMED_1086SMED_1085SMED_1088SMED_1087SMED_1086SMED_1088SMED_1089
SLOI323850 SHEW_1207SHEW_0198SHEW_1269SHEW_2242SHEW_1208SHEW_0198SHEW_0330SHEW_3560
SLAC55218 SL1157_2681SL1157_2679SL1157_3083SL1157_2682SL1157_2681SL1157_2679SL1157_2682SL1157_2683
SHIGELLA YGBPYGADS2856YOHIYGBBYDEJYHDGGLNL
SHAL458817 SHAL_1224SHAL_4097SHAL_1346SHAL_1583SHAL_1225SHAL_4097SHAL_3901SHAL_0342
SFUM335543 SFUM_1637SFUM_2530SFUM_1813SFUM_1636SFUM_2530SFUM_1813SFUM_0854
SFLE373384 SFV_2751SFV_2805SFV_2215SFV_2752SFV_1553SFV_3285SFV_3632
SFLE198214 AAN44259.1AAN44215.1AAN44173.1AAN43747.1AAN44258.1AAN43147.1AAN44762.1AAN45374.1
SENT454169 SEHA_C3120SEHA_C3016SEHA_C2902SEHA_C2409SEHA_C3119SEHA_C1685SEHA_C3682SEHA_C4334
SENT321314 SCH_2862SCH_2763SCH_2687SCH_2191SCH_2861SCH_1532SCH_3322SCH_3898
SENT295319 SPA2786SPA2688SPA2546SPA0677SPA2785SPA1341SPA3251SPA3847
SENT220341 STY3055STY2951STY2873STY2404STY3054STY1547STY3564STY3875
SENT209261 T2831T2731T2641T0681T2830T1435T3299T3615
SDYS300267 SDY_2946SDY_2896SDY_2792SDY_2147SDY_2945SDY_1588SDY_3437SDY_3874
SDEN318161 SDEN_1198SDEN_0246SDEN_1240SDEN_2388SDEN_1199SDEN_0246SDEN_0445SDEN_3457
SDEG203122 SDE_1247SDE_1287SDE_2739SDE_1304SDE_1248SDE_1287SDE_0808SDE_0500
SBOY300268 SBO_2773SBO_2818SBO_2754SBO_3254SBO_2774SBO_1611SBO_3254SBO_3881
SBAL402882 SHEW185_3134SHEW185_4098SHEW185_1299SHEW185_2622SHEW185_3133SHEW185_4098SHEW185_3964SHEW185_0259
SBAL399599 SBAL195_3277SBAL195_4216SBAL195_1335SBAL195_2697SBAL195_3276SBAL195_4216SBAL195_4080SBAL195_0267
SALA317655 SALA_1279SALA_1280SALA_1277SALA_1278SALA_1279SALA_1277SALA_1276
SACI56780 SYN_01401SYN_02030SYN_02436SYN_01400SYN_02030SYN_02436SYN_02215
RSPH349102 RSPH17025_1485RSPH17025_1482RSPH17025_1045RSPH17025_1486RSPH17025_1484RSPH17025_1482RSPH17025_1486RSPH17025_1487
RSPH349101 RSPH17029_1459RSPH17029_1462RSPH17029_1429RSPH17029_1458RSPH17029_1460RSPH17029_1462RSPH17029_1458RSPH17029_1457
RSPH272943 RSP_2835RSP_2833RSP_2787RSP_2836RSP_6071RSP_2833RSP_2836RSP_2837
RSOL267608 RSC1643RSC2770RSC1425RSC1635RSC1644RSC2770RSC0506RSC1260
RRUB269796 RRU_A1674RRU_A1870RRU_A1876RRU_A1676RRU_A1674RRU_A1870RRU_A1676RRU_A1677
RPOM246200 SPO_2092SPO_2096SPO_2089SPO_2090SPO_2092SPO_2089SPO_2088
RPAL316058 RPB_2885RPB_2886RPB_2887RPB_2884RPB_2885RPB_2886RPB_2884RPB_2883
RPAL316057 RPD_2587RPD_2586RPD_2585RPD_2588RPD_2587RPD_2586RPD_2588RPD_2589
RPAL316056 RPC_2575RPC_2574RPC_2573RPC_2576RPC_2575RPC_2574RPC_2576RPC_2577
RPAL316055 RPE_2755RPE_2754RPE_2753RPE_2756RPE_2755RPE_2754RPE_2756RPE_2757
RPAL258594 RPA2590RPA2589RPA2588RPA2591RPA2590RPA2589RPA2591RPA2592
RMET266264 RMET_1954RMET_3049RMET_1457RMET_0429RMET_1953RMET_3049RMET_0429RMET_2060
RLEG216596 RL2254RL2253RL2252RL2255RL2254RL2253RL2255RL2256
RFER338969 RFER_1332RFER_0076RFER_2291RFER_3024RFER_1332RFER_0076RFER_1580RFER_2981
REUT381666 H16_A1456H16_A3156H16_A2034H16_A1443H16_A1457H16_A3156H16_A0503H16_A2333
REUT264198 REUT_A1361REUT_A2850REUT_A1860REUT_A1351REUT_A1362REUT_A2850REUT_A0489REUT_A2055
RETL347834 RHE_CH01945RHE_CH01944RHE_CH01943RHE_CH01946RHE_CH01945RHE_CH01944RHE_CH01946RHE_CH01947
RDEN375451 RD1_2766RD1_2769RD1_2770RD1_2765RD1_2767RD1_2769RD1_2765RD1_2764
PTHE370438 PTH_0289PTH_1300PTH_0259PTH_0290PTH_1300PTH_0259PTH_1422
PSYR223283 PSPTO_1556PSPTO_4034PSPTO_4513PSPTO_2169PSPTO_1560PSPTO_4034PSPTO_4864PSPTO_0353
PSYR205918 PSYR_1365PSYR_1377PSYR_4201PSYR_1979PSYR_1369PSYR_1377PSYR_4404PSYR_4821
PSTU379731 PST_1559PST_1507PST_3333PST_1768PST_1566PST_1507PST_3277PST_0350
PSP312153 PNUC_0930PNUC_0221PNUC_1425PNUC_1875PNUC_0931PNUC_0221PNUC_1875PNUC_1254
PSP296591 BPRO_2716BPRO_4476BPRO_2437BPRO_3425BPRO_2715BPRO_4476BPRO_1130BPRO_1809
PPUT76869 PPUTGB1_1168PPUTGB1_1230PPUTGB1_4733PPUTGB1_1512PPUTGB1_1172PPUTGB1_3003PPUTGB1_4873PPUTGB1_5100
PPUT351746 PPUT_4163PPUT_4089PPUT_4598PPUT_3779PPUT_4159PPUT_4089PPUT_4695PPUT_4922
PPUT160488 PP_1614PP_1628PP_4732PP_1981PP_1618PP_3298PP_4820PP_5047
PPRO298386 PBPRA3077PBPRA3069PBPRA0691PBPRA2613PBPRA3076PBPRA3069PBPRA3410PBPRA3494
PNAP365044 PNAP_2549PNAP_3667PNAP_2004PNAP_1302PNAP_2548PNAP_3667PNAP_3360PNAP_2778
PMEN399739 PMEN_3031PMEN_3016PMEN_3630PMEN_2727PMEN_3026PMEN_2276PMEN_0710PMEN_4143
PLUM243265 PLU0713PLU1248PLU3377PLU1512PLU0714PLU1248PLU4088PLU0236
PING357804 PING_0672PING_3382PING_1603PING_2279PING_0673PING_3382PING_3215PING_3487
PHAL326442 PSHAA0684PSHAA0693PSHAA0842PSHAA1195PSHAA0685PSHAA0693PSHAA0347PSHAA0164
PFLU220664 PFL_1198PFL_1230PFL_0821PFL_2059PFL_1202PFL_4720PFL_0668PFL_0378
PFLU216595 PFLU1293PFLU1188PFLU5275PFLU4202PFLU1297PFLU1188PFLU0614PFLU0344
PFLU205922 PFL_1123PFL_1174PFL_0757PFL_1882PFL_1127PFL_1174PFL_0615PFL_0340
PENT384676 PSEEN4198PSEEN4129PSEEN0771PSEEN1646PSEEN4194PSEEN4129PSEEN4861PSEEN0387
PCAR338963 PCAR_0103PCAR_2403PCAR_1992PCAR_0102PCAR_2403PCAR_1992PCAR_1993
PATL342610 PATL_3857PATL_3262PATL_1740PATL_2915PATL_3858PATL_3262PATL_0270PATL_1027
PAER208964 PA3633PA3618PA4767PA3129PA3627PA2141PA4852PA5124
PAER208963 PA14_17340PA14_17520PA14_63050PA14_23640PA14_17420PA14_36880PA14_64180PA14_67670
OCAR504832 OCAR_6093OCAR_6092OCAR_6094OCAR_6093OCAR_6092OCAR_6094OCAR_6095
OANT439375 OANT_2069OANT_2068OANT_2066OANT_2070OANT_2069OANT_2068OANT_2070OANT_2071
NWIN323098 NWI_1442NWI_1441NWI_1440NWI_1443NWI_1442NWI_1441NWI_1443NWI_1444
NMUL323848 NMUL_A2127NMUL_A0015NMUL_A1202NMUL_A0131NMUL_A2126NMUL_A0015NMUL_A0131
NMEN374833 NMCC_1418NMCC_0044NMCC_0761NMCC_0943NMCC_1417NMCC_0044NMCC_1327
NMEN272831 NMC1442NMC0019NMC0749NMC0986NMC1441NMC0019NMC1354
NMEN122587 NMA1713NMA0289NMA1006NMA1207NMA1712NMA0289NMA1633
NMEN122586 NMB_1513NMB_0043NMB_0797NMB_0999NMB_1512NMB_0043NMB_1421
NHAM323097 NHAM_1834NHAM_1833NHAM_1832NHAM_1835NHAM_1834NHAM_1833NHAM_1835NHAM_1836
NGON242231 NGO0972NGO2058NGO0381NGO0894NGO0971NGO2058NGO0151
NEUT335283 NEUT_1525NEUT_2521NEUT_0586NEUT_1208NEUT_1300NEUT_2521NEUT_1208
NEUR228410 NE1412NE2561NE0429NE0874NE1402NE2561NE0874
NARO279238 SARO_1925SARO_1923SARO_1922SARO_1926SARO_1925SARO_1923SARO_1926SARO_1927
MTHE264732 MOTH_2487MOTH_0735MOTH_0147MOTH_2486MOTH_0735MOTH_0147MOTH_1138
MSP409 M446_5927M446_5926M446_5925M446_5928M446_5927M446_5926M446_5928M446_5929
MSP400668 MMWYL1_1301MMWYL1_3733MMWYL1_3970MMWYL1_3625MMWYL1_1302MMWYL1_3733MMWYL1_2985MMWYL1_0735
MSP266779 MESO_1621MESO_1622MESO_1623MESO_1620MESO_1621MESO_1622MESO_1620MESO_1619
MPET420662 MPE_A1570MPE_A0212MPE_A1617MPE_A0486MPE_A1571MPE_A0212MPE_A0486MPE_A2074
MMAR394221 MMAR10_1439MMAR10_1438MMAR10_1437MMAR10_1439MMAR10_1438MMAR10_1440MMAR10_1441
MMAG342108 AMB2363AMB2548AMB2323AMB2363AMB2548AMB2365AMB2366
MLOT266835 MLL0395MLL0394MLR0393MLL0395MLL0394MLR0396MLR0397
MFLA265072 MFLA_1116MFLA_0571MFLA_1144MFLA_0351MFLA_1117MFLA_0571MFLA_0351MFLA_2449
MEXT419610 MEXT_2817MEXT_2816MEXT_2800MEXT_2818MEXT_2817MEXT_2816MEXT_2818MEXT_2819
MCAP243233 MCA_2517MCA_0385MCA_1696MCA_1745MCA_2518MCA_0385MCA_1745MCA_2542
MAQU351348 MAQU_0923MAQU_2083MAQU_3368MAQU_1057MAQU_0924MAQU_2083MAQU_3448MAQU_0767
LCHO395495 LCHO_2295LCHO_3921LCHO_2058LCHO_2126LCHO_2293LCHO_3921LCHO_0534LCHO_3583
KPNE272620 GKPORF_B2440GKPORF_B2359GKPORF_B2274GKPORF_B1864GKPORF_B2439GKPORF_B0655GKPORF_B3008GKPORF_B3518
JSP375286 MMA_1409MMA_0607MMA_2037MMA_1410MMA_1654MMA_0306MMA_1080
JSP290400 JANN_2235JANN_2233JANN_2231JANN_2236JANN_2235JANN_2233JANN_2236JANN_2237
ILOI283942 IL0752IL0743IL0897IL2288IL0751IL0743IL2288IL2436
HNEP81032 HNE_2014HNE_2017HNE_2020HNE_2014HNE_2017HNE_2013HNE_2012
HMOD498761 HM1_1354HM1_2373HM1_0661HM1_1354HM1_2373HM1_0661HM1_1290
HCHE349521 HCH_01869HCH_05233HCH_01217HCH_06009HCH_01870HCH_05233HCH_06009HCH_01034
HARS204773 HEAR1912HEAR0640HEAR1356HEAR1911HEAR0640HEAR0253HEAR0950
GURA351605 GURA_4163GURA_0217GURA_0914GURA_4164GURA_0217GURA_0914GURA_0915
GSUL243231 GSU_3368GSU_0143GSU_1005GSU_3367GSU_0143GSU_1005GSU_1004
GMET269799 GMET_0060GMET_0196GMET_2561GMET_0059GMET_0196GMET_2561GMET_2562
GBET391165 GBCGDNIH1_1019GBCGDNIH1_1192GBCGDNIH1_1189GBCGDNIH1_1228GBCGDNIH1_1019GBCGDNIH1_1192GBCGDNIH1_1228GBCGDNIH1_1227
ESP42895 ENT638_3218ENT638_3175ENT638_3099ENT638_2742ENT638_3217ENT638_3132ENT638_3699ENT638_4097
EFER585054 EFER_0321EFER_0374EFER_0454EFER_2225EFER_0322EFER_1538EFER_3239EFER_3904
ECOO157 YGBPYGADZ3912YOHIYGBBYDEJYHDGGLNL
ECOL83334 ECS3601ECS3557ECS3481ECS3026ECS3600ECS2146ECS4132ECS4791
ECOL585397 ECED1_3203ECED1_3149ECED1_3057ECED1_2587ECED1_3202ECED1_3149ECED1_3919ECED1_4570
ECOL585057 ECIAI39_2936ECIAI39_2886ECIAI39_2822ECIAI39_2279ECIAI39_2935ECIAI39_2886ECIAI39_3760ECIAI39_3132
ECOL585056 ECUMN_3071ECUMN_3021ECUMN_2943ECUMN_2473ECUMN_3070ECUMN_3021ECUMN_3734ECUMN_4392
ECOL585055 EC55989_3019EC55989_2962EC55989_2907EC55989_2390EC55989_3018EC55989_1678EC55989_3674EC55989_4344
ECOL585035 ECS88_3017ECS88_2963ECS88_2805ECS88_2286ECS88_3016ECS88_2963ECS88_3645ECS88_4319
ECOL585034 ECIAI1_2848ECIAI1_2792ECIAI1_2740ECIAI1_2217ECIAI1_2847ECIAI1_1556ECIAI1_3403ECIAI1_4068
ECOL481805 ECOLC_0965ECOLC_1012ECOLC_1065ECOLC_1508ECOLC_0966ECOLC_2121ECOLC_0446ECOLC_4147
ECOL469008 ECBD_0977ECBD_1025ECBD_1068ECBD_1518ECBD_0978ECBD_2102ECBD_0485ECBD_4158
ECOL439855 ECSMS35_2872ECSMS35_2823ECSMS35_2771ECSMS35_2287ECSMS35_2871ECSMS35_2823ECSMS35_3555ECSMS35_4254
ECOL413997 ECB_02597ECB_02550ECB_02507ECB_02069ECB_02596ECB_01496ECB_03118ECB_03754
ECOL409438 ECSE_2999ECSE_2948ECSE_2902ECSE_2407ECSE_2998ECSE_1633ECSE_3541ECSE_4152
ECOL405955 APECO1_3776APECO1_3826APECO1_3916APECO1_4410APECO1_3777APECO1_3826APECO1_3178APECO1_2593
ECOL364106 UTI89_C3118UTI89_C3062UTI89_C2953UTI89_C2413UTI89_C3117UTI89_C3062UTI89_C3702UTI89_C4458
ECOL362663 ECP_2729ECP_2660ECP_2619ECP_2179ECP_2728ECP_2660ECP_3353ECP_4080
ECOL331111 ECE24377A_3048ECE24377A_2984ECE24377A_2903ECE24377A_2429ECE24377A_3047ECE24377A_1746ECE24377A_3745ECE24377A_4391
ECOL316407 ECK2742:JW2717:B2747ECK2695:JW2670:B2700ECK2615:JW2600:B2619ECK2133:JW2128:B2140ECK2741:JW2716:B2746ECK1530:JW1530:B1537ECK3247:JW3228:B3260ECK3862:JW3840:B3869
ECOL199310 C3314C3254C3141C2672C3313C3254C4026C4818
ECAR218491 ECA3535ECA3370ECA0837ECA2799ECA3534ECA3370ECA0256ECA0028
DSHI398580 DSHI_1577DSHI_1579DSHI_1580DSHI_1576DSHI_1577DSHI_1579DSHI_1576DSHI_1575
DRED349161 DRED_0187DRED_1922DRED_0172DRED_0188DRED_1922DRED_0172DRED_2000
DOLE96561 DOLE_2147DOLE_1570DOLE_2866DOLE_1666DOLE_1570DOLE_2866DOLE_0426
DHAF138119 DSY0443DSY1955DSY0217DSY0444DSY1955DSY0217DSY4412
DARO159087 DARO_1973DARO_3874DARO_2341DARO_2886DARO_1974DARO_3874DARO_3665DARO_3759
CVIO243365 CV_1258CV_2370CV_3463CV_2329CV_1259CV_2370CV_0544CV_3591
CSP78 CAUL_2603CAUL_2602CAUL_2750CAUL_2604CAUL_2603CAUL_2602CAUL_2604CAUL_2605
CSP501479 CSE45_1378CSE45_1376CSE45_1374CSE45_1379CSE45_1378CSE45_1376CSE45_1379CSE45_1380
CSAL290398 CSAL_2638CSAL_0622CSAL_3100CSAL_0691CSAL_2637CSAL_0622CSAL_2287CSAL_0245
CPSY167879 CPS_1072CPS_3682CPS_3828CPS_0906CPS_1073CPS_3682CPS_0550CPS_0398
CJAP155077 CJA_2223CJA_2231CJA_3361CJA_1386CJA_2222CJA_2231CJA_2745CJA_3536
CHYD246194 CHY_2342CHY_1165CHY_2369CHY_2341CHY_1165CHY_2369CHY_2022
CDES477974 DAUD_0186DAUD_0842DAUD_0127DAUD_0186DAUD_0842DAUD_0127DAUD_0675
CAULO CC1738CC1737CC1736CC1739CC1738CC1737CC1739CC1740
BVIE269482 BCEP1808_1870BCEP1808_0602BCEP1808_1904BCEP1808_1869BCEP1808_0602BCEP1808_0658BCEP1808_2227
BTHA271848 BTH_I2089BTH_I1186BTH_I2050BTH_I1252BTH_I2090BTH_I1186BTH_I1252BTH_I1845
BSUI204722 BR_1120BR_1121BR_1123BR_1120BR_1121BR_1119BR_1118
BSP376 BRADO3869BRADO3870BRADO3878BRADO3868BRADO3869BRADO3870BRADO3868BRADO3867
BSP36773 BCEP18194_A5254BCEP18194_A3710BCEP18194_A5308BCEP18194_A5253BCEP18194_A3710BCEP18194_A3779BCEP18194_A5457
BPSE320373 BURPS668_2358BURPS668_3442BURPS668_2411BURPS668_2357BURPS668_3442BURPS668_3360BURPS668_2633
BPSE272560 BPSL2099BPSL2962BPSL2136BPSL2098BPSL2962BPSL2894BPSL2317
BPET94624 BPET1695BPET3953BPET2513BPET1696BPET3953BPET0908BPET2275
BPER257313 BP0865BP3489BP1443BP0866BP3489BP3414BP1597
BPAR257311 BPP3366BPP0862BPP1550BPP3365BPP0862BPP3564BPP2987
BOVI236 GBOORF1120GBOORF1121GBOORF1123GBOORF1119GBOORF1120GBOORF1121GBOORF1119GBOORF1118
BMEL359391 BAB1_1143BAB1_1144BAB1_1146BAB1_1142BAB1_1143BAB1_1144BAB1_1142BAB1_1141
BMEL224914 BMEI0863BMEI0862BMEI0860BMEI0864BMEI0863BMEI0862BMEI0864BMEI0865
BMAL320389 BMA10247_1259BMA10247_3306BMA10247_1302BMA10247_1258BMA10247_3306BMA10247_2538BMA10247_1523
BMAL320388 BMASAVP1_A1987BMASAVP1_A0399BMASAVP1_A2031BMASAVP1_A1986BMASAVP1_A0399BMASAVP1_A0272BMASAVP1_A2251
BMAL243160 BMA_1490BMA_2480BMA_1531BMA_1489BMA_2480BMA_2358BMA_1741
BJAP224911 BLL4485BLL4484BLR4478BLR4486BLL4485BLL4484BLR4486BLR4487
BFRA295405 BF3962BF2430BF4566BF4006BF2430BF4566BF1592
BCEN331272 BCEN2424_1943BCEN2424_0628BCEN2424_1998BCEN2424_1942BCEN2424_0628BCEN2424_0693BCEN2424_2148
BCEN331271 BCEN_6136BCEN_0145BCEN_6079BCEN_6137BCEN_0145BCEN_0209BCEN_5929
BCAN483179 BCAN_A1139BCAN_A1140BCAN_A1142BCAN_A1138BCAN_A1139BCAN_A1140BCAN_A1138BCAN_A1137
BBRO257310 BB3817BB0956BB2628BB3816BB0956BB3999BB2953
BAMB398577 BAMMC406_1858BAMMC406_0553BAMMC406_1900BAMMC406_1857BAMMC406_0553BAMMC406_0612BAMMC406_2058
BAMB339670 BAMB_1931BAMB_0529BAMB_2031BAMB_1930BAMB_0529BAMB_0586BAMB_2185
BABO262698 BRUAB1_1126BRUAB1_1127BRUAB1_1129BRUAB1_1125BRUAB1_1126BRUAB1_1127BRUAB1_1125BRUAB1_1124
AVAR240292 AVA_2414AVA_2078AVA_0645AVA_1811AVA_2078AVA_0645AVA_1343
ASP76114 EBA6543EBA3399EBA6653EBA6542EBA3399EBA1152EBA4117
ASP62928 AZO1682AZO0508AZO1577AZO1522AZO1683AZO0508AZO2892AZO0736
ASP232721 AJS_3156AJS_0354AJS_2551AJS_3192AJS_3155AJS_0354AJS_3586AJS_1191
ASAL382245 ASA_3473ASA_3808ASA_2921ASA_2091ASA_3472ASA_3808ASA_0808ASA_4122
AORE350688 CLOS_0463CLOS_1943CLOS_0447CLOS_0464CLOS_1943CLOS_0447CLOS_1078
AMET293826 AMET_4506AMET_1704AMET_4527AMET_4505AMET_1704AMET_4527AMET_3256
AHYD196024 AHA_0823AHA_3717AHA_1444AHA_2208AHA_0824AHA_3717AHA_3510AHA_0275
AEHR187272 MLG_1837MLG_1484MLG_1908MLG_1836MLG_1484MLG_1399MLG_0015
ACRY349163 ACRY_0551ACRY_1911ACRY_2825ACRY_2031ACRY_1911ACRY_2032ACRY_2033
ACAU438753 AZC_3089AZC_3090AZC_1748AZC_3088AZC_3089AZC_3090AZC_3088AZC_3087
ABOR393595 ABO_1166ABO_1802ABO_2162ABO_1167ABO_1802ABO_2013ABO_2260
ABAU360910 BAV1060BAV0574BAV1756BAV1059BAV0574BAV2774BAV1930
AAVE397945 AAVE_1581AAVE_0429AAVE_3373AAVE_1255AAVE_1582AAVE_0429AAVE_0894AAVE_1444


Organism features enriched in list (features available for 196 out of the 211 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00009831692
Disease:Bubonic_plague 0.001371566
Disease:Dysentery 0.001371566
Disease:Gastroenteritis 0.00138731013
Endospores:No 5.996e-1333211
Endospores:Yes 0.0000826653
GC_Content_Range4:0-40 7.041e-453213
GC_Content_Range4:40-60 2.584e-9108224
GC_Content_Range4:60-100 4.496e-1385145
GC_Content_Range7:30-40 1.967e-313166
GC_Content_Range7:50-60 2.902e-1369107
GC_Content_Range7:60-70 3.606e-1685134
Genome_Size_Range5:2-4 5.202e-643197
Genome_Size_Range5:4-6 3.682e-31124184
Genome_Size_Range5:6-10 0.00002722947
Genome_Size_Range9:2-3 6.574e-817120
Genome_Size_Range9:4-5 1.491e-126396
Genome_Size_Range9:5-6 7.835e-146188
Genome_Size_Range9:6-8 9.962e-72738
Gram_Stain:Gram_Neg 4.789e-33176333
Gram_Stain:Gram_Pos 1.567e-245150
Habitat:Host-associated 0.000245351206
Habitat:Multiple 0.000056080178
Habitat:Specialized 0.0026902953
Motility:No 3.432e-1613151
Motility:Yes 5.663e-14132267
Optimal_temp.:25-30 2.283e-81819
Optimal_temp.:37 0.002503324106
Oxygen_Req:Anaerobic 0.000017617102
Oxygen_Req:Facultative 0.000016390201
Shape:Coccus 0.00002191282
Shape:Rod 2.408e-16161347
Shape:Sphere 0.0036017119
Shape:Spiral 0.0000910234
Temp._range:Hyperthermophilic 0.0007944123
Temp._range:Mesophilic 0.0071032169473
Temp._range:Thermophilic 0.0016272435



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 131
Effective number of orgs (counting one per cluster within 468 clusters): 94

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RMAS416276 ncbi Rickettsia massiliae MTU51
PTOR263820 ncbi Picrophilus torridus DSM 97900
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G371
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CABO218497 ncbi Chlamydophila abortus S26/31
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G7423   G7409   G7358   EG12022   EG11816   EG11645   EG11311   EG10387   
UURE95667 UU083
UURE95664 UUR10_0089
UPAR505682 UPA3_0082
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA0171
TTHE262724 TT_C1815
TPEN368408
TPAL243276 TP_0512
TKOD69014
TACI273075
STOK273063
STHE322159 STER_0231
STHE299768 STR0181
STHE264199 STU0181
SSUI391296 SSU98_1975
SSUI391295 SSU05_1970
SSOL273057
SSAP342451
SPYO370554 MGAS10750_SPY0111
SPYO370553 MGAS2096_SPY0107
SPYO370552 MGAS10270_SPY0106
SPYO370551 MGAS9429_SPY0105
SPYO319701 M28_SPY0102
SPYO293653 M5005_SPY0104
SPYO286636 M6_SPY0153
SPYO198466 SPYM3_0095
SPYO193567 SPS0097
SPYO186103 SPYM18_0122
SPYO160490 SPY0122
SPNE487214 SPH_2384
SPNE487213 SPT_2204
SPNE171101 SPR1994
SPNE170187
SPNE1313 SPJ_2216
SMUT210007 SMU_187C
SMAR399550
SHAE279808
SEPI176280
SEPI176279
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SAGA211110 GBS1866
SAGA208435 SAG_1825
SAGA205921 SAK_1845
SACI330779
RMAS416276 RMA_0216
PTOR263820
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
OIHE221109 OB1680
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPEN272633 MYPE6400
MMOB267748
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273 MG_115
MCAP340047 MCAP_0837
MBUR259564 MBUR_2154
MART243272
MAEO419665
LSAK314315 LSA1595
LMES203120
LLAC272623 L19272
LLAC272622 LACR_2221
LJOH257314 LJ_0286
LHEL405566 LHV_0298
LGAS324831 LGAS_0279
LDEL390333 LDB0372
LDEL321956 LBUL_0327
IHOS453591
HBUT415426
CTRA471473 CTLON_0718
CTRA471472 CTL0722
CSUL444179
CPNE182082 CPB0603
CPNE138677 CPJ0579
CPNE115713 CPN0579
CPNE115711 CP_0169
CMUR243161 TC_0747
CMET456442
CMAQ397948
CKOR374847
CFEL264202 CF0845
CCAV227941 CCA_00162
CBLO203907 BFL547
CABO218497 CAB160
BTUR314724
BLON206672 BL0324
BHER314723
BGAR290434
BBUR224326
BAPH372461
BAFZ390236
AYEL322098
AURANTIMONAS
APER272557
AFUL224325


Organism features enriched in list (features available for 125 out of the 131 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00051973292
Arrangment:Clusters 4.112e-91517
Arrangment:Singles 0.000663946286
Disease:Pharyngitis 3.729e-688
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 3.078e-81111
Disease:Wide_range_of_infections 3.078e-81111
Disease:bronchitis_and_pneumonitis 3.729e-688
Endospores:No 2.029e-2090211
Endospores:Yes 0.0000228153
GC_Content_Range4:0-40 5.597e-1482213
GC_Content_Range4:40-60 0.009430838224
GC_Content_Range4:60-100 6.619e-125145
GC_Content_Range7:0-30 0.00037622047
GC_Content_Range7:30-40 7.446e-962166
GC_Content_Range7:50-60 0.000530611107
GC_Content_Range7:60-70 1.420e-105134
Genome_Size_Range5:0-2 2.953e-2379155
Genome_Size_Range9:0-1 2.442e-92027
Genome_Size_Range9:1-2 3.558e-1359128
Genome_Size_Range9:2-3 0.000018543120
Genome_Size_Range9:3-4 4.607e-6377
Gram_Stain:Gram_Neg 6.560e-2027333
Gram_Stain:Gram_Pos 1.845e-653150
Habitat:Host-associated 1.126e-667206
Habitat:Multiple 6.552e-717178
Habitat:Specialized 0.00209352053
Habitat:Terrestrial 0.0040688131
Motility:No 1.962e-1061151
Motility:Yes 1.098e-732267
Optimal_temp.:- 2.466e-633257
Optimal_temp.:100 0.009671033
Optimal_temp.:30-35 0.000490467
Optimal_temp.:30-37 3.056e-71418
Optimal_temp.:85 0.002034244
Oxygen_Req:Aerobic 1.457e-717185
Oxygen_Req:Anaerobic 0.006220831102
Oxygen_Req:Facultative 0.000329059201
Pathogenic_in:Human 0.005169157213
Pathogenic_in:Swine 0.000425155
Shape:Coccus 1.487e-205382
Shape:Irregular_coccus 1.201e-61317
Shape:Rod 9.444e-2129347
Shape:Sphere 8.806e-61319
Temp._range:Hyperthermophilic 4.878e-81723



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 5
Effective number of orgs (counting one per cluster within 468 clusters): 5

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
AMAR234826 ncbi Anaplasma marginale St. Maries 0.00154473456
NWIN323098 ncbi Nitrobacter winogradskyi Nb-255 0.006883211788
NSEN222891 ncbi Neorickettsia sennetsu Miyayama 0.00804772505
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-1 0.009359812248
GBET391165 ncbi Granulibacter bethesdensis CGDNIH1 0.009671012298


Names of the homologs of the genes in the group in each of these orgs
  G7423   G7409   G7358   EG12022   EG11816   EG11645   EG11311   EG10387   
AMAR234826 AM1357AM841AM492AM1356AM1272AM492
NWIN323098 NWI_1442NWI_1441NWI_1440NWI_1443NWI_1442NWI_1441NWI_1443NWI_1444
NSEN222891 NSE_0178NSE_0323NSE_0373NSE_0134NSE_0373
PSP312153 PNUC_0930PNUC_0221PNUC_1425PNUC_1875PNUC_0931PNUC_0221PNUC_1875PNUC_1254
GBET391165 GBCGDNIH1_1019GBCGDNIH1_1192GBCGDNIH1_1189GBCGDNIH1_1228GBCGDNIH1_1019GBCGDNIH1_1192GBCGDNIH1_1228GBCGDNIH1_1227


Organism features enriched in list (features available for 5 out of the 5 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Bovine_anaplasmosis 0.008576311
Disease:Chronic_granulomatous_disease 0.008576311
Disease:Sennetsu_fever 0.008576311



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951680.7457
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491400.7119
GLYCOCAT-PWY (glycogen degradation I)2461830.6916
TYRFUMCAT-PWY (tyrosine degradation I)1841490.6444
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001940.6272
PWY-4041 (γ-glutamyl cycle)2791850.6173
PWY-5918 (heme biosynthesis I)2721820.6146
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251630.6129
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181600.6127
PWY-5028 (histidine degradation II)1301160.6007
PWY-1269 (CMP-KDO biosynthesis I)3251970.5902
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831410.5884
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861820.5794
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911420.5687
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911820.5672
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391980.5665
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961830.5620
P344-PWY (acrylonitrile degradation)2101490.5588
PWY-5148 (acyl-CoA hydrolysis)2271560.5576
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551670.5562
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481980.5474
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761320.5454
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491630.5447
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491630.5447
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351110.5374
PWY-5913 (TCA cycle variation IV)3011810.5366
AST-PWY (arginine degradation II (AST pathway))1201030.5363
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381120.5330
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001800.5321
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901760.5289
GALACTCAT-PWY (D-galactonate degradation)104930.5255
REDCITCYC (TCA cycle variation II)1741270.5146
GALACTARDEG-PWY (D-galactarate degradation I)1511160.5133
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561180.5101
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982070.5098
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651970.5053
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291850.4999
GLUCONSUPER-PWY (D-gluconate degradation)2291480.4955
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911320.4951
GLUCARDEG-PWY (D-glucarate degradation I)1521140.4937
PWY-5340 (sulfate activation for sulfonation)3852000.4859
PWY-46 (putrescine biosynthesis III)1381060.4840
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111760.4794
PWY-6268 (adenosylcobalamin salvage from cobalamin)3171780.4792
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222080.4721
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)1351030.4715
P601-PWY (D-camphor degradation)95820.4701
PWY-3162 (tryptophan degradation V (side chain pathway))94810.4659
PWY-6087 (4-chlorocatechol degradation)2231410.4632
ARGSYNBSUB-PWY (arginine biosynthesis II (acetyl cycle))3831950.4550
PWY-5964 (molybdopterin guanine dinucleotide biosynthesis)2901640.4473
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96800.4461
GLYSYN-THR-PWY (glycine biosynthesis IV)2151350.4436
2ASDEG-PWY (orthanilate degradation)72660.4415
PWY-5938 ((R)-acetoin biosynthesis I)3761910.4414
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121330.4381
GALACTITOLCAT-PWY (galactitol degradation)73660.4353
PWY-6193 (3-chlorocatechol degradation II (ortho))1941250.4343
PWY-561 (superpathway of glyoxylate cycle)1621110.4340
PWY-2361 (3-oxoadipate degradation)82710.4337
PWY-5507 (adenosylcobalamin biosynthesis I (early cobalt insertion))2991650.4327
PWY-5386 (methylglyoxal degradation I)3051670.4322
P381-PWY (adenosylcobalamin biosynthesis II (late cobalt incorporation))3711880.4309
PWY0-862 (cis-dodecenoyl biosynthesis)3431790.4284
GLYOXYLATE-BYPASS (glyoxylate cycle)1691130.4254
PWY0-981 (taurine degradation IV)106830.4251
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112860.4246
PWY-6389 ((S)-acetoin biosynthesis)3681860.4233
VALDEG-PWY (valine degradation I)2901600.4201
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161990.4184
DAPLYSINESYN-PWY (lysine biosynthesis I)3421770.4169
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891590.4157
PWY0-321 (phenylacetate degradation I (aerobic))1551050.4119
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261710.4114
PWY1-3 (polyhydroxybutyrate biosynthesis)115860.4113
PWY-5025 (IAA biosynthesis IV)92740.4096
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94750.4090
PWY-4221 (pantothenate and coenzymeA biosynthesis II)112840.4069
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3741850.4039
PWY-5188 (tetrapyrrole biosynthesis I)4392030.4038
PWY-4302 (aerobic respiration -- electron donor III)2141290.4037
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)1781140.4033
PWY-3941 (β-alanine biosynthesis II)117860.4027
LIPASYN-PWY (phospholipases)2121280.4023



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7409   G7358   EG12022   EG11816   EG11645   EG11311   EG10387   
G74230.9992240.9990950.9992330.9999890.9991160.9993480.99883
G74090.9991210.9986440.9992630.9999990.9989750.998717
G73580.9985220.9991920.9990050.9986070.998667
EG120220.9992310.998510.9998930.999054
EG118160.9991990.9993210.998971
EG116450.9987960.998672
EG113110.999322
EG10387



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PAIRWISE BLAST SCORES:

  G7423   G7409   G7358   EG12022   EG11816   EG11645   EG11311   EG10387   
G74230.0f0-------
G7409-0.0f0---2.4e-24--
G7358--0.0f0-----
EG12022---0.0f0--1.7e-25-
EG11816----0.0f0---
EG11645-6.5e-15---0.0f0--
EG11311------0.0f0-
EG10387-------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- NONMEVIPP-PWY (methylerythritol phosphate pathway) (degree of match pw to cand: 0.222, degree of match cand to pw: 0.250, average score: 0.646)
  Genes in pathway or complex:
             0.1738 0.0021 G6237 (dxs) DXS-MONOMER (Dxs)
             0.8817 0.2893 EG12715 (dxr) DXPREDISOM-MONOMER (Dxr)
             0.4371 0.0018 EG10370 (ispG) EG10370-MONOMER (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase)
             0.3461 0.0627 EG11081 (ispH) EG11081-MONOMER (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase)
   *in cand* 0.9994 0.9988 G7423 (ispD) G7423-MONOMER (4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer)
             0.5286 0.0008 EG11294 (ispE) EG11294-MONOMER (IspE)
   *in cand* 0.9994 0.9990 EG11816 (ispF) EG11816-MONOMER (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer)
             0.6763 0.1955 G7508 (idi) IPPISOM-MONOMER (isopentenyl diphosphate isomerase)
             0.7091 0.2335 EG11328 (fdx) OX-FERREDOXIN (oxidized ferredoxin)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9990 0.9987 EG10387 (glnL) PROTEIN-NRII (NtrB)
   *in cand* 0.9993 0.9986 EG11311 (dusB) EG11311-MONOMER (tRNA dihydrouridine synthase)
   *in cand* 0.9992 0.9985 EG11645 (ydeJ) EG11645-MONOMER (conserved protein)
   *in cand* 0.9991 0.9985 EG12022 (dusC) EG12022-MONOMER (tRNA dihydrouridine synthase)
   *in cand* 0.9990 0.9985 G7358 (yfjG) G7358-MONOMER (toxin of a putative toxin-antitoxin pair)
   *in cand* 0.9992 0.9986 G7409 (ygaD) G7409-MONOMER (conserved protein)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11816 G7423 (centered at G7423)
EG10387 (centered at EG10387)
EG11311 (centered at EG11311)
EG11645 (centered at EG11645)
EG12022 (centered at EG12022)
G7358 (centered at G7358)
G7409 (centered at G7409)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7423   G7409   G7358   EG12022   EG11816   EG11645   EG11311   EG10387   
418/623378/623258/623316/623415/623376/623414/623251/623
AAEO224324:0:Tyes257741--0741--
AAUR290340:2:Tyes----0-577-
AAVE397945:0:Tyes11340289581011350456999
ABAC204669:0:Tyes1582128-0157-0727
ABAU360910:0:Tyes48701183-486022051355
ABOR393595:0:Tyes0650-101416508641113
ABUT367737:0:Tyes-389--0389--
ACAU438753:0:Tyes13551356013541355135613541353
ACEL351607:0:Tyes14481412--0---
ACRY349163:8:Tyes013652286-1487136514881489
ADEH290397:0:Tyes02367-25460-2546644
AEHR187272:0:Tyes180714591878-1806145913740
AFER243159:0:Tyes241618812503-24151881-0
AHYD196024:0:Tyes538332811441895539332831470
ALAI441768:0:Tyes---1176-01176-
AMAR234826:0:Tyes637-24806365670-
AMAR329726:9:Tyes2588563-015275630-
AMET293826:0:Tyes28030-28272802028271539
ANAE240017:0:Tyes----1282-0-
AORE350688:0:Tyes191516-02015160628
APHA212042:0:Tyes--0219872862219-
APLE416269:0:Tyes613-75119614-0-
APLE434271:0:Tno586-78125587-0-
ASAL382245:5:Tyes25522884202412332551288403189
ASP1667:3:Tyes-737--0-614-
ASP232721:2:Tyes2714021322748271303134828
ASP62928:0:Tyes1210010991044121102430233
ASP62977:0:Tyes1104--01101-1607510
ASP76114:2:Tyes318413333242-3183133301751
AVAR240292:3:Tyes17781445-0117514450705
BABO262698:1:Tno23412310
BAMB339670:3:Tno143301533-14320581696
BAMB398577:3:Tno131601358-13150591524
BAMY326423:0:Tyes241582--25-01236
BANT260799:0:Tno12--013-0-
BANT261594:2:Tno9--010-0-
BANT568206:2:Tyes9--010-02946
BANT592021:2:Tno10--011-0-
BAPH198804:0:Tyes1---0---
BBAC264462:0:Tyes-0-725-0-2342
BBAC360095:0:Tyes1-0-1---
BBRO257310:0:Tyes288601687-2885030732011
BCAN483179:1:Tno23512310
BCEN331271:0:Tno215-159-216--0
BCEN331271:2:Tno-0---065-
BCEN331272:3:Tyes131301368-13120651518
BCER226900:1:Tyes23--024-01356
BCER288681:0:Tno12--013-01339
BCER315749:1:Tyes9--010-02107
BCER405917:1:Tyes11--012-01433
BCER572264:1:Tno9--010-01291
BCIC186490:0:Tyes1---0---
BCLA66692:0:Tyes24--025-0-
BFRA272559:1:Tyes12130-1831126301831-
BFRA295405:0:Tno2402851-3036245185130360
BHAL272558:0:Tyes27---28-01779
BHEN283166:0:Tyes210-21--
BJAP224911:0:Fyes76087689
BLIC279010:0:Tyes121768--13176801372
BLON206672:0:Tyes0-------
BMAL243160:1:Tno188335-0883775222
BMAL320388:1:Tno16811251725-168012501936
BMAL320389:1:Tyes1200644-020061251258
BMEL224914:1:Tno32043245
BMEL359391:1:Tno23412310
BOVI236:1:Tyes23412310
BPAR257311:0:Tno23760655-2375025742018
BPER257313:0:Tyes02375518-123752306665
BPET94624:0:Tyes79230811609-793308101372
BPSE272560:1:Tyes187736-0877809222
BPSE320372:1:Tno-9510--951874212
BPSE320373:1:Tno1103853-01038956263
BPUM315750:0:Tyes131568--14-01262
BQUI283165:0:Tyes210-21--
BSP107806:2:Tyes1---0---
BSP36773:2:Tyes156901623-15680701781
BSP376:0:Tyes23912310
BSUB:0:Tyes241743--25174301384
BSUI204722:1:Tyes235-2310
BSUI470137:1:Tno124-120-
BTHA271848:1:Tno881084266882066644
BTHE226186:0:Tyes30660-2204302702204-
BTHU281309:1:Tno9--010-01245
BTHU412694:1:Tno18--019-01235
BTRI382640:1:Tyes210-21--
BVIE269482:7:Tyes125901293-12580561615
BWEI315730:4:Tyes24--025-0-
BXEN266265:0:Tyes-0---0--
CABO218497:0:Tyes0-------
CACE272562:1:Tyes27513152-2772031522772-
CAULO:0:Tyes21032134
CBEI290402:0:Tyes264709--192470903643
CBLO203907:0:Tyes--0-----
CBLO291272:0:Tno0-390-1---
CBOT36826:1:Tno3401141-341701413417-
CBOT441770:0:Tyes3361143-337701433377-
CBOT441771:0:Tno3226145-324201453242-
CBOT441772:1:Tno3436143-345301433453-
CBOT498213:1:Tno3455148-347101483471-
CBOT508765:1:Tyes303149-016631490-
CBOT515621:2:Tyes3606150-362201503622-
CBOT536232:0:Tno3706142-372601423726-
CBUR227377:1:Tyes-0240--0--
CBUR360115:1:Tno-0526--0--
CBUR434922:2:Tno-0385--0--
CCAV227941:1:Tyes0-------
CCHL340177:0:Tyes7890-971650097-
CCON360104:2:Tyes-1238-0221---
CCUR360105:0:Tyes-0--9090--
CDES477974:0:Tyes59671-0596710524
CDIF272563:1:Tyes01400-3570114003570-
CDIP257309:0:Tyes65-----0-
CEFF196164:0:Fyes1436----01375-
CFEL264202:1:Tyes0-------
CFET360106:0:Tyes-343-0162---
CGLU196627:0:Tyes91-----0-
CHOM360107:1:Tyes-0--260--
CHUT269798:0:Tyes26922132-0277321320-
CHYD246194:0:Tyes11390-1158113801158833
CJAP155077:0:Tyes8148221945081382213342119
CJEI306537:0:Tyes-----7860-
CJEJ192222:0:Tyes----1435-0-
CJEJ195099:0:Tno----1609-0-
CJEJ354242:2:Tyes----1389-0-
CJEJ360109:0:Tyes----1714-0-
CJEJ407148:0:Tno----1426-0-
CKLU431943:1:Tyes173195--354331950-
CMIC31964:2:Tyes1117---1117-0-
CMIC443906:2:Tyes926---926-0-
CMUR243161:1:Tyes0-------
CNOV386415:0:Tyes1370--2163095-
CPEL335992:0:Tyes--0-31--
CPER195102:1:Tyes23690--224602416-
CPER195103:0:Tno25270--241502564-
CPER289380:3:Tyes22220--210902259-
CPHY357809:0:Tyes02079-722945207972-
CPNE115711:1:Tyes0-------
CPNE115713:0:Tno0-------
CPNE138677:0:Tno0-------
CPNE182082:0:Tno0-------
CPRO264201:0:Fyes0--1281---1062
CPSY167879:0:Tyes6603195333649966131951520
CRUT413404:0:Tyes348590--59--
CSAL290398:0:Tyes24443882909459244338820920
CSP501479:8:Fyes42054256
CSP78:2:Tyes1014921023
CTEP194439:0:Tyes0703-605281703605-
CTET212717:0:Tyes2220138--241380-
CTRA471472:0:Tyes0-------
CTRA471473:0:Tno0-------
CVES412965:0:Tyes331-0-----
CVIO243365:0:Tyes735187329921832736187303133
DARO159087:0:Tyes019043639111190416941790
DDES207559:0:Tyes16361366--16361366-0
DETH243164:0:Tyes01190--1--65
DGEO319795:1:Tyes104--0----
DHAF138119:0:Tyes2351775-0236177504247
DNOD246195:0:Tyes--548---0-
DOLE96561:0:Tyes17401157-24731253115724730
DPSY177439:2:Tyes02772--02772-2706
DRAD243230:3:Tyes2330--21700---
DRED349161:0:Tyes231767-024176701842
DSHI398580:5:Tyes24512410
DSP216389:0:Tyes01071--1---
DSP255470:0:Tno0997--1--1326
DVUL882:1:Tyes4190--4190-2336
ECAN269484:0:Tyes1-459-0842218-
ECAR218491:0:Tyes355733868192792355633862410
ECHA205920:0:Tyes144-449-1430716-
ECOL199310:0:Tno633575463063257513322113
ECOL316407:0:Tno1205115810826071204017111858
ECOL331111:6:Tno1249118711156631248019232545
ECOL362663:0:Tno554485439055348511771895
ECOL364106:1:Tno702646537070164612862029
ECOL405955:2:Tyes657602505065660212321837
ECOL409438:6:Tyes1394134312927851393019442577
ECOL413997:0:Tno1114106710195731113016392288
ECOL439855:4:Tno564515470056351512191887
ECOL469008:0:Tno4955435911048496162003669
ECOL481805:0:Tno5215686251075522167703716
ECOL585034:0:Tno1274122211716551273018262466
ECOL585035:0:Tno713660503071266013251972
ECOL585055:0:Tno1325127012137011324019672624
ECOL585056:2:Tno602555472060155512591911
ECOL585057:0:Tno65961154306586111497866
ECOL585397:0:Tno613560467061256013151950
ECOL83334:0:Tno1497145313709021496020392725
ECOLI:0:Tno1236118811136191235017542374
ECOO157:0:Tno17321683160011321731022762971
EFAE226185:3:Tyes-2936--0-209-
EFER585054:1:Tyes05213618841120229123550
ELIT314225:0:Tyes-45-2410
ERUM254945:0:Tyes--501-0873253-
ERUM302409:0:Tno--495-0868253-
ESP42895:1:Tyes48944636504883989711378
FALN326424:0:Tyes7680--767---
FJOH376686:0:Tyes-3935---39350-
FMAG334413:1:Tyes1---0395--
FNOD381764:0:Tyes01432---1432--
FNUC190304:0:Tyes0349-1241208349--
FPHI484022:1:Tyes162-0-1492-1893-
FRANT:0:Tno176-607-561-0-
FSP106370:0:Tyes7210--720---
FSP1855:0:Tyes0844--1---
FSUC59374:0:Tyes02170--19282170--
FTUL351581:0:Tno660-0-47-175-
FTUL393011:0:Tno578-0-49-153-
FTUL393115:0:Tyes176-605-559-0-
FTUL401614:0:Tyes0-536362483-362-
FTUL418136:0:Tno398-165-118-0-
FTUL458234:0:Tno594-0-51-163-
GBET391165:0:Tyes01731702090173209208
GFOR411154:0:Tyes---1087-01087-
GKAU235909:1:Tyes20--021-0935
GMET269799:1:Tyes1135-2507013525072508
GOXY290633:5:Tyes119118181816-119118180-
GSUL243231:0:Tyes32070-85632060856855
GTHE420246:1:Tyes8---9-0750
GURA351605:0:Tyes39240-69439250694695
GVIO251221:0:Tyes17681413-0253514130-
HACI382638:1:Tyes-0--940--
HARS204773:0:Tyes15633561042-15623560650
HAUR316274:2:Tyes-1738-0-173802811
HCHE349521:0:Tyes80340401744799804404047990
HDUC233412:0:Tyes761-11931140760-0-
HHAL349124:0:Tyes213434262-212434-0
HHEP235279:0:Tyes-107-0780107--
HINF281310:0:Tyes1--3250-325-
HINF374930:0:Tyes1236--01237-919-
HINF71421:0:Tno393--0392-698-
HMAR272569:8:Tyes-0---0--
HMOD498761:0:Tyes6671704-62666717046260
HMUK485914:1:Tyes-0---0--
HNEP81032:0:Tyes258-2510
HPY:0:Tno-0--690--
HPYL357544:1:Tyes-518--0518--
HPYL85963:0:Tno-477--0477--
HSAL478009:4:Tyes-0---0--
HSOM205914:1:Tyes990-0786992-60-
HSOM228400:0:Tno177-14540175-1296-
HSP64091:2:Tno-0---0--
HWAL362976:1:Tyes-0---0--
ILOI283942:0:Tyes9015415888015881738
JSP290400:1:Tyes42054256
JSP375286:0:Tyes11253101760-112613770786
KPNE272620:2:Tyes17581676159711991757023182818
KRAD266940:2:Fyes1---0---
LACI272621:0:Tyes---0--0-
LBIF355278:2:Tyes-1703-26301703--
LBIF456481:2:Tno-1752-27801752--
LBOR355276:1:Tyes25251128-024841128--
LBOR355277:1:Tno2471056-02851056--
LBRE387344:2:Tyes-----6620-
LCAS321967:1:Tyes170--1567-01567-
LCHO395495:0:Tyes17823416154416121780341603073
LDEL321956:0:Tyes------0-
LDEL390333:0:Tyes------0-
LGAS324831:0:Tyes------0-
LHEL405566:0:Tyes------0-
LINN272626:1:Tno23---24-0-
LINT189518:1:Tyes10501697-036151697-3924
LINT267671:1:Tno25662055-05962055-3051
LINT363253:3:Tyes----0--631
LJOH257314:0:Tyes------0-
LLAC272622:5:Tyes------0-
LLAC272623:0:Tyes------0-
LMON169963:0:Tno23---24-0-
LMON265669:0:Tyes8---9-0-
LPLA220668:0:Tyes-----15240-
LPNE272624:0:Tno-143102482-1431--
LPNE297245:1:Fno-134402365-1344--
LPNE297246:1:Fyes-132602488-1326--
LPNE400673:0:Tno-016951863-0--
LREU557436:0:Tyes-----2620-
LSAK314315:0:Tyes------0-
LSPH444177:1:Tyes4449--04448-0-
LWEL386043:0:Tyes8-----0-
LXYL281090:0:Tyes841---841-0-
MABS561007:1:Tyes01883------
MACE188937:0:Tyes---0--0-
MAER449447:0:Tyes295323-0155123--
MAQU351348:2:Tyes15512992575285156129926550
MAVI243243:0:Tyes02197--12197--
MBAR269797:1:Tyes---0--0-
MBOV233413:0:Tno16930---0--
MBOV410289:0:Tno17150---0--
MBUR259564:0:Tyes------0-
MCAP243233:0:Tyes20140122512702015012702039
MCAP340047:0:Tyes------0-
MEXT419610:0:Tyes161501716151718
MFLA265072:0:Tyes762219790076321902092
MFLO265311:0:Tyes---0-1840-
MGEN243273:0:Tyes-----0--
MGIL350054:3:Tyes8701631---16310-
MLEP272631:0:Tyes01041--11041--
MLOT266835:2:Tyes210-2134
MMAG342108:0:Tyes402250-402254243
MMAR394221:0:Tyes210-2134
MMAZ192952:0:Tyes---0--0-
MMYC272632:0:Tyes---0--0-
MPEN272633:0:Tyes-----0--
MPET420662:1:Tyes135801405274135902741856
MPNE272634:0:Tyes-0---0--
MSME246196:0:Tyes589633620-58953362--
MSP164756:1:Tno20570--20560--
MSP164757:0:Tno24030--24020--
MSP189918:2:Tyes21010--21000--
MSP266779:3:Tyes23412310
MSP400668:0:Tyes569304532872933570304522870
MSP409:2:Tyes21032134
MSUC221988:0:Tyes1789--14131788-0-
MTBCDC:0:Tno18400---0--
MTBRV:0:Tno16970---0--
MTHE264732:0:Tyes2284568-022835680967
MTUB336982:0:Tno16750---0--
MTUB419947:0:Tyes17560---0--
MVAN350058:0:Tyes11180---0--
MXAN246197:0:Tyes-3685-2869-368528690
NARO279238:0:Tyes31043145
NEUR228410:0:Tyes995216004499852160449-
NEUT335283:2:Tyes927189906157071899615-
NFAR247156:2:Tyes0----742174-
NGON242231:0:Tyes749175621668474817560-
NHAM323097:2:Tyes21032134
NMEN122586:0:Tno14090728923140801321-
NMEN122587:0:Tyes13300673868132901249-
NMEN272831:0:Tno12530668879125201181-
NMEN374833:0:Tno13520703882135101262-
NMUL323848:3:Tyes20960118111620950116-
NOCE323261:1:Tyes071341-171--
NPHA348780:2:Tyes-0---0--
NSEN222891:0:Tyes39-1792280-228-
NSP103690:6:Tyes39843619-0268236190-
NSP35761:1:Tyes2105---2091-0-
NSP387092:0:Tyes-695-6050695605-
NWIN323098:0:Tyes21032134
OANT439375:5:Tyes32043245
OCAR504832:0:Tyes10-21023
OIHE221109:0:Tyes-------0
OTSU357244:0:Fyes-042725-0725-
PACN267747:0:Tyes0---1---
PAER208963:0:Tyes01537495196159238374115
PAER208964:0:Tno15141499266910021508027543028
PARC259536:0:Tyes400--7730-57-
PATL342610:0:Tyes3614302214772658361530220759
PCAR338963:0:Tyes12326-19110232619111912
PCRY335284:1:Tyes786--122571-0634
PDIS435591:0:Tyes-0-2640202702640-
PENT384676:0:Tyes3575350635111743571350642090
PFLU205922:0:Tyes79084142115647948412770
PFLU216595:1:Tyes920821475237259248212580
PFLU220664:0:Tyes806838435164681042752880
PGIN242619:0:Tyes12341485-0614850-
PHAL326442:1:Tyes51952867510555205281820
PING357804:0:Tyes0254787914991254723812649
PINT246198:0:Tyes-0---0--
PINT246198:1:Tyes31--2400-240-
PLUM243265:0:Fyes489102431991319490102439080
PLUT319225:0:Tyes10101660-0128816600-
PMAR146891:0:Tyes2310-81711970--
PMAR167539:0:Tyes1760--10890--
PMAR167540:0:Tyes2090-77210490772-
PMAR167542:0:Tyes2430-82711870--
PMAR167546:0:Tyes1990-82411890--
PMAR167555:0:Tyes1830-11713830--
PMAR59920:0:Tno962791-9000---
PMAR74546:0:Tyes2030-77511380--
PMAR74547:0:Tyes11421678-01611678--
PMAR93060:0:Tyes2640-86312450--
PMEN399739:0:Tyes23642350296120472359159403483
PMOB403833:0:Tyes0160---160--
PMUL272843:1:Tyes1443-017151444-922-
PNAP365044:8:Tyes1253238270801252238220691482
PPEN278197:0:Tyes-0---0246-
PPRO298386:2:Tyes23782370019142377237027082792
PPUT160488:0:Tno01431103724169031983423
PPUT351746:0:Tyes40132784103973279381167
PPUT76869:0:Tno06136033584185137413970
PRUM264731:0:Tyes11670-167318960--
PSP117:0:Tyes3230---0-4063-
PSP296591:2:Tyes1576332412982285157533240673
PSP312153:0:Tyes716012231674717016741051
PSP56811:2:Tyes714--14149-0856
PSTU379731:0:Tyes12041152296614111211115229100
PSYR205918:0:Tyes012285662541230603481
PSYR223283:2:Tyes11953640411518061199364044590
PTHE370438:0:Tyes361077-037107701202
RAKA293614:0:Fyes--1700--0-
RALB246199:0:Tyes8829--4388290-
RBEL336407:0:Tyes--078--78-
RBEL391896:0:Fno--810--0-
RCAN293613:0:Fyes--1600--0-
RCAS383372:0:Tyes---0---2068
RCON272944:0:Tno--2020--0-
RDEN375451:4:Tyes25613510
RETL347834:5:Tyes21032134
REUT264198:3:Tyes87123811368861872238101564
REUT381666:2:Tyes93825781481925939257801776
RFEL315456:2:Tyes--11270--0-
RFER338969:1:Tyes12560221529481256015042905
RLEG216596:6:Tyes21032134
RMAS416276:1:Tyes--0-----
RMET266264:2:Tyes15182606102501517260601624
RPAL258594:0:Tyes21032134
RPAL316055:0:Tyes21032134
RPAL316056:0:Tyes21032134
RPAL316057:0:Tyes21032134
RPAL316058:0:Tyes23412310
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