CANDIDATE ID: 225

CANDIDATE ID: 225

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9915300e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.2500000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- G7423 (ispD) (b2747)
   Products of gene:
     - G7423-MONOMER (4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer)
     - CPLX0-234 (4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
       Reactions:
        2-C-methyl-D-erythritol-4-phosphate + CTP + H+  =  4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + diphosphate
         In pathways
         PWY-5121 (PWY-5121)
         PWY-6270 (PWY-6270)
         NONMEVIPP-PWY (methylerythritol phosphate pathway)

- G7409 (ygaD) (b2700)
   Products of gene:
     - G7409-MONOMER (conserved protein)

- EG12022 (dusC) (b2140)
   Products of gene:
     - EG12022-MONOMER (tRNA dihydrouridine synthase)
       Reactions:
        a tRNA  ->  tRNA containing 5,6-dihydrouridine

- EG11816 (ispF) (b2746)
   Products of gene:
     - EG11816-MONOMER (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer)
     - CPLX0-721 (2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase)
       Reactions:
        2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol  ->  CMP + 2-C-methyl-D-erythritol-2,4-cyclodiphosphate
         In pathways
         PWY-5121 (PWY-5121)
         PWY-6270 (PWY-6270)
         NONMEVIPP-PWY (methylerythritol phosphate pathway)

- EG11645 (ydeJ) (b1537)
   Products of gene:
     - EG11645-MONOMER (conserved protein)

- EG11311 (dusB) (b3260)
   Products of gene:
     - EG11311-MONOMER (tRNA dihydrouridine synthase)
       Reactions:
        a tRNA  ->  tRNA containing 5,6-dihydrouridine

- EG10387 (glnL) (b3869)
   Products of gene:
     - PROTEIN-NRIIP (NtrB-P)
     - PROTEIN-NRII (NtrB)
       Regulatees:
     - GLNL-CPLX (NtrB)

- EG10317 (fis) (b3261)
   Products of gene:
     - PD00196 (Fis)
       Regulatees:
        TU0-6409 (gltX)
        TU0-13407 (yeaR-yoaG)
        TU0-14739 (ogt)
        TU00205 (guaBA)
        TU00176 (dps)
        TU0-14627 (trg)
        TU0-3341 (ygjG)
        TU0-6569 (ansB)
        TU543 (rnpB)
        TU00516 (glyU)
        TU0-2504 (topA)
        TU0-8001 (glnQ)
        TU0-3721 (acs-yjcHG)
        TU0-5903 (glnA)
        TU00029 (glnALG)
        TU0-14398 (crp)
        TU0-1963 (glcC)
        TU00501 (pheV)
        TU522 (mazEFG)
        TU523 (mazEFG)
        TU0-1187 (rrsG-gltW-rrlG-rrfG)
        TU0-1143 (yfiD)
        TU00495 (valUXY-lysV)
        TU00514 (alaWX)
        TU00500 (argW)
        TU00448 (nuoABCEFGHIJKLMN)
        TU00030 (glpABC)
        TU00216 (glpTQ)
        TU00047 (nrdAB)
        TU00140 (gyrA)
        TU00494 (proL)
        TU0-7901 (mglAC)
        TU00398 (osmE)
        TU0-6507 (katE)
        TU0-1501 (flxA)
        TU0-6981 (cspI)
        TU00190 (marRAB)
        TU369 (gadBC)
        TU0-3901 (sra)
        TU0-2501 (topA)
        TU00198 (adhE)
        TU00139 (hns)
        TU00511 (tyrTV-tpr)
        TU00510 (serX)
        TU00044 (narGHJI)
        TU581 (hlyE)
        TU00158 (ndh)
        TU0-1141 (ptsG)
        TU00288 (hyaABCDEF)
        TU00061 (pyrD)
        TU00380 (pflB)
        TU00019 (dmsABC)
        TU00491 (argU)
        TU488 (hupB)
        TU0-1189 (rrsH-ileV-alaV-rrlH-rrfH)
        TU343 (metY)
        TU0-6223 (metY-yhbC-nusA-infB-rbfA-truB-rpsO-pnp)
        TU00517 (metY-yhbC-nusA-infB)
        TU0-1601 (nanATEK-yhcH)
        TU00021 (dusB-fis)
        TU0-1191 (rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF)
        TU0-14396 (crp)
        TU00119 (crp)
        TU00046 (nirBDC-cysG)
        TU586 (gadAX)
        TU00519 (proK)
        TU00374 (xylFGHR)
        TU00138 (aldB)
        TU00193 (mtlADR)
        TU0-2603 (gyrB)
        TU0-4802 (bglGFB)
        TU0-1183 (rrsC-gltU-rrlC-rrfC)
        TU00503 (argX-hisR-leuT-proM)
        TU00215 (fadBA)
        TU0-1181 (rrsA-ileT-alaT-rrlA-rrfA)
        TU00430 (trmA)
        TU0-1182 (rrsB-gltT-rrlB-rrfB)
        TU00504 (thrU-tyrU-glyT-thrT-tufB)
        TU486 (hupA)
        TU0-1186 (rrsE-gltV-rrlE-rrfE)
        TU00038 (malEFG)
        TU0-3723 (acs-yjcHG)
        TU00199 (nrfABCDEFG)
        TU0-3882 (proP)
        TU00159 (fumB)
        TU00520 (pheU)
        TU241 (msrA)
        TU00506 (leuX)
        TU00521 (leuQPV)
        TU0-1981 (osmY)
        TU00490 (thrW)
        TU0-1142 (ptsG)
        TU00507 (metT-leuW-glnUW-metU-glnVX)
        TU489 (hupB)
        TU871 (queA)
        TU00489 (aspV)
        TU796 (acnB)
        TU00523 (lpdA)
        TU00110 (carAB)
        TU0-5221 (pdxA-rsmA)
        TU0-5201 (pdxA-rsmA-apaGH)
        TU00492 (lysT-valT-lysW)
        TU00509 (serT)
        TU00045 (narK)
        TU00018 (deoCABD)
     - CPLX0-7705 (Fis DNA binding transcriptional dual regulator)
       Regulatees:
        TU0-6409 (gltX)
        TU0-13407 (yeaR-yoaG)
        TU0-14739 (ogt)
        TU00205 (guaBA)
        TU00176 (dps)
        TU0-14627 (trg)
        TU0-3341 (ygjG)
        TU0-6569 (ansB)
        TU543 (rnpB)
        TU00516 (glyU)
        TU0-2504 (topA)
        TU0-8001 (glnQ)
        TU0-3721 (acs-yjcHG)
        TU0-5903 (glnA)
        TU00029 (glnALG)
        TU0-14398 (crp)
        TU0-1963 (glcC)
        TU00501 (pheV)
        TU522 (mazEFG)
        TU523 (mazEFG)
        TU0-1187 (rrsG-gltW-rrlG-rrfG)
        TU0-1143 (yfiD)
        TU00495 (valUXY-lysV)
        TU00514 (alaWX)
        TU00500 (argW)
        TU00448 (nuoABCEFGHIJKLMN)
        TU00030 (glpABC)
        TU00216 (glpTQ)
        TU00047 (nrdAB)
        TU00140 (gyrA)
        TU00494 (proL)
        TU0-7901 (mglAC)
        TU00398 (osmE)
        TU0-6507 (katE)
        TU0-1501 (flxA)
        TU0-6981 (cspI)
        TU00190 (marRAB)
        TU369 (gadBC)
        TU0-3901 (sra)
        TU0-2501 (topA)
        TU00198 (adhE)
        TU00139 (hns)
        TU00511 (tyrTV-tpr)
        TU00510 (serX)
        TU00044 (narGHJI)
        TU581 (hlyE)
        TU00158 (ndh)
        TU0-1141 (ptsG)
        TU00288 (hyaABCDEF)
        TU00061 (pyrD)
        TU00380 (pflB)
        TU00019 (dmsABC)
        TU00491 (argU)
        TU488 (hupB)
        TU0-1189 (rrsH-ileV-alaV-rrlH-rrfH)
        TU343 (metY)
        TU0-6223 (metY-yhbC-nusA-infB-rbfA-truB-rpsO-pnp)
        TU00517 (metY-yhbC-nusA-infB)
        TU0-1601 (nanATEK-yhcH)
        TU00021 (dusB-fis)
        TU0-1191 (rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF)
        TU0-14396 (crp)
        TU00119 (crp)
        TU00046 (nirBDC-cysG)
        TU586 (gadAX)
        TU00519 (proK)
        TU00374 (xylFGHR)
        TU00138 (aldB)
        TU00193 (mtlADR)
        TU0-2603 (gyrB)
        TU0-4802 (bglGFB)
        TU0-1183 (rrsC-gltU-rrlC-rrfC)
        TU00503 (argX-hisR-leuT-proM)
        TU00215 (fadBA)
        TU0-1181 (rrsA-ileT-alaT-rrlA-rrfA)
        TU00430 (trmA)
        TU0-1182 (rrsB-gltT-rrlB-rrfB)
        TU00504 (thrU-tyrU-glyT-thrT-tufB)
        TU486 (hupA)
        TU0-1186 (rrsE-gltV-rrlE-rrfE)
        TU00038 (malEFG)
        TU0-3723 (acs-yjcHG)
        TU00199 (nrfABCDEFG)
        TU0-3882 (proP)
        TU00159 (fumB)
        TU00520 (pheU)
        TU241 (msrA)
        TU00506 (leuX)
        TU00521 (leuQPV)
        TU0-1981 (osmY)
        TU00490 (thrW)
        TU0-1142 (ptsG)
        TU00507 (metT-leuW-glnUW-metU-glnVX)
        TU489 (hupB)
        TU871 (queA)
        TU00489 (aspV)
        TU796 (acnB)
        TU00523 (lpdA)
        TU00110 (carAB)
        TU0-5221 (pdxA-rsmA)
        TU0-5201 (pdxA-rsmA-apaGH)
        TU00492 (lysT-valT-lysW)
        TU00509 (serT)
        TU00045 (narK)
        TU00018 (deoCABD)



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 207
Effective number of orgs (counting one per cluster within 468 clusters): 149

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM47
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A8
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110188
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103318
XCAM487884 Xanthomonas campestris pv. paulliniae8
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-108
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80048
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339138
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3068
XAUT78245 ncbi Xanthobacter autotrophicus Py28
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
VCHO345073 ncbi Vibrio cholerae O3958
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169618
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252598
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
SSP94122 ncbi Shewanella sp. ANA-38
SSP644076 Silicibacter sp. TrichCH4B8
SSP292414 ncbi Ruegeria sp. TM10408
SSON300269 ncbi Shigella sonnei Ss0468
SSED425104 ncbi Shewanella sediminis HAW-EB38
SPRO399741 ncbi Serratia proteamaculans 5688
SPEA398579 ncbi Shewanella pealeana ATCC 7003458
SONE211586 ncbi Shewanella oneidensis MR-18
SMEL266834 ncbi Sinorhizobium meliloti 10218
SMED366394 ncbi Sinorhizobium medicae WSM4198
SLOI323850 ncbi Shewanella loihica PV-48
SLAC55218 Ruegeria lacuscaerulensis8
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SHAL458817 ncbi Shewanella halifaxensis HAW-EB48
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB7
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1978
SDEN318161 ncbi Shewanella denitrificans OS2178
SDEG203122 ncbi Saccharophagus degradans 2-408
SBOY300268 ncbi Shigella boydii Sb2278
SBAL402882 ncbi Shewanella baltica OS1858
SBAL399599 ncbi Shewanella baltica OS1958
SACI56780 ncbi Syntrophus aciditrophicus SB7
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170258
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170298
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.18
RSOL267608 ncbi Ralstonia solanacearum GMI10008
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111708
RPOM246200 ncbi Ruegeria pomeroyi DSS-37
RPAL316058 ncbi Rhodopseudomonas palustris HaA28
RPAL316057 ncbi Rhodopseudomonas palustris BisB58
RPAL316056 ncbi Rhodopseudomonas palustris BisB188
RPAL316055 ncbi Rhodopseudomonas palustris BisA538
RPAL258594 ncbi Rhodopseudomonas palustris CGA0098
RMET266264 ncbi Ralstonia metallidurans CH348
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38418
RFER338969 ncbi Rhodoferax ferrireducens T1188
REUT381666 ncbi Ralstonia eutropha H168
REUT264198 ncbi Ralstonia eutropha JMP1348
RETL347834 ncbi Rhizobium etli CFN 428
RDEN375451 ncbi Roseobacter denitrificans OCh 1148
PTHE370438 ncbi Pelotomaculum thermopropionicum SI8
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30008
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a8
PSTU379731 ncbi Pseudomonas stutzeri A15018
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-18
PSP296591 ncbi Polaromonas sp. JS6668
PPUT76869 ncbi Pseudomonas putida GB-18
PPUT351746 ncbi Pseudomonas putida F18
PPUT160488 ncbi Pseudomonas putida KT24408
PPRO298386 ncbi Photobacterium profundum SS98
PNAP365044 ncbi Polaromonas naphthalenivorans CJ28
PMEN399739 ncbi Pseudomonas mendocina ymp8
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO18
PING357804 ncbi Psychromonas ingrahamii 378
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1258
PFLU220664 ncbi Pseudomonas fluorescens Pf-58
PFLU216595 ncbi Pseudomonas fluorescens SBW258
PFLU205922 ncbi Pseudomonas fluorescens Pf0-18
PENT384676 ncbi Pseudomonas entomophila L488
PCAR338963 ncbi Pelobacter carbinolicus DSM 23808
PATL342610 ncbi Pseudoalteromonas atlantica T6c8
PAER208964 ncbi Pseudomonas aeruginosa PAO18
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA148
OCAR504832 ncbi Oligotropha carboxidovorans OM58
OANT439375 ncbi Ochrobactrum anthropi ATCC 491888
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2558
NMUL323848 ncbi Nitrosospira multiformis ATCC 251967
NMEN374833 ncbi Neisseria meningitidis 0534427
NMEN272831 ncbi Neisseria meningitidis FAM187
NMEN122587 ncbi Neisseria meningitidis Z24917
NMEN122586 ncbi Neisseria meningitidis MC587
NHAM323097 ncbi Nitrobacter hamburgensis X148
NGON242231 ncbi Neisseria gonorrhoeae FA 10907
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197187
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124448
MTHE264732 ncbi Moorella thermoacetica ATCC 390737
MSP409 Methylobacterium sp.8
MSP400668 ncbi Marinomonas sp. MWYL18
MSP266779 ncbi Chelativorans sp. BNC18
MPET420662 ncbi Methylibium petroleiphilum PM17
MMAG342108 ncbi Magnetospirillum magneticum AMB-17
MLOT266835 ncbi Mesorhizobium loti MAFF3030997
MFLA265072 ncbi Methylobacillus flagellatus KT8
MEXT419610 ncbi Methylobacterium extorquens PA18
MCAP243233 ncbi Methylococcus capsulatus Bath8
MAQU351348 ncbi Marinobacter aquaeolei VT88
LCHO395495 ncbi Leptothrix cholodnii SP-68
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
JSP375286 ncbi Janthinobacterium sp. Marseille7
JSP290400 ncbi Jannaschia sp. CCS18
ILOI283942 ncbi Idiomarina loihiensis L2TR8
HMOD498761 ncbi Heliobacterium modesticaldum Ice17
HCHE349521 ncbi Hahella chejuensis KCTC 23968
HARS204773 ncbi Herminiimonas arsenicoxydans7
GURA351605 ncbi Geobacter uraniireducens Rf48
GSUL243231 ncbi Geobacter sulfurreducens PCA8
GMET269799 ncbi Geobacter metallireducens GS-158
GBET391165 ncbi Granulibacter bethesdensis CGDNIH18
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DSHI398580 ncbi Dinoroseobacter shibae DFL 128
DRED349161 ncbi Desulfotomaculum reducens MI-17
DOLE96561 ncbi Desulfococcus oleovorans Hxd37
DHAF138119 ncbi Desulfitobacterium hafniense Y517
DARO159087 ncbi Dechloromonas aromatica RCB8
CVIO243365 ncbi Chromobacterium violaceum ATCC 124728
CSP78 Caulobacter sp.8
CSP501479 Citreicella sp. SE458
CSAL290398 ncbi Chromohalobacter salexigens DSM 30438
CPSY167879 ncbi Colwellia psychrerythraea 34H8
CJAP155077 Cellvibrio japonicus8
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29017
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C7
CAULO ncbi Caulobacter crescentus CB158
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHA271848 ncbi Burkholderia thailandensis E2648
BSUI204722 ncbi Brucella suis 13307
BSP376 Bradyrhizobium sp.8
BSP36773 Burkholderia sp.7
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE272560 ncbi Burkholderia pseudomallei K962437
BPET94624 Bordetella petrii7
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128227
BOVI236 Brucella ovis8
BMEL359391 ncbi Brucella melitensis biovar Abortus 23088
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M8
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1108
BFRA295405 ncbi Bacteroides fragilis YCH467
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCAN483179 ncbi Brucella canis ATCC 233658
BBRO257310 ncbi Bordetella bronchiseptica RB507
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9418
AVAR240292 ncbi Anabaena variabilis ATCC 294137
ASP62928 ncbi Azoarcus sp. BH728
ASP232721 ncbi Acidovorax sp. JS428
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4498
AORE350688 ncbi Alkaliphilus oremlandii OhILAs7
AMET293826 ncbi Alkaliphilus metalliredigens QYMF7
AHYD196024 Aeromonas hydrophila dhakensis8
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C7
ACRY349163 ncbi Acidiphilium cryptum JF-57
ACAU438753 ncbi Azorhizobium caulinodans ORS 5718
ABOR393595 ncbi Alcanivorax borkumensis SK28
ABAU360910 ncbi Bordetella avium 197N7
AAVE397945 ncbi Acidovorax citrulli AAC00-18


Names of the homologs of the genes in the group in each of these orgs
  G7423   G7409   EG12022   EG11816   EG11645   EG11311   EG10387   EG10317   
ZMOB264203 ZMO1128ZMO1130ZMO1127ZMO1128ZMO1130ZMO1127ZMO1126
YPSE349747 YPSIP31758_3299YPSIP31758_3241YPSIP31758_2808YPSIP31758_3298YPSIP31758_3241YPSIP31758_0386YPSIP31758_0026YPSIP31758_0385
YPSE273123 YPTB0770YPTB0822YPTB1216YPTB0771YPTB0822YPTB3576YPTB0023YPTB3577
YPES386656 YPDSF_2999YPDSF_3053YPDSF_2522YPDSF_3000YPDSF_3053YPDSF_0261YPDSF_3881YPDSF_0260
YPES377628 YPN_0732YPN_0786YPN_2803YPN_0733YPN_0786YPN_3517YPN_0250YPN_3518
YPES360102 YPA_2782YPA_2837YPA_0885YPA_2783YPA_2837YPA_3667YPA_3519YPA_3666
YPES349746 YPANGOLA_A0964YPANGOLA_A0902YPANGOLA_A1355YPANGOLA_A0963YPANGOLA_A0902YPANGOLA_A1211YPANGOLA_A0028YPANGOLA_A1212
YPES214092 YPO3361YPO3308YPO1175YPO3360YPO3308YPO3655YPO0023YPO3654
YPES187410 Y0828Y0880Y3015Y0829Y0880Y0213Y3805Y0214
YENT393305 YE0769YE0828YE2886YE0770YE0828YE3816YE0026YE3817
XORY360094 XOOORF_1707XOOORF_1723XOOORF_1119XOOORF_1708XOOORF_1723XOOORF_1119XOOORF_0296XOOORF_4798
XORY342109 XOO2812XOO2796XOO3567XOO2811XOO2796XOO3567XOO4225XOO0512
XORY291331 XOO2961XOO2944XOO3787XOO2960XOO2944XOO3787XOO4484XOO0548
XCAM487884 XCC-B100_2557XCC-B100_2541XCC-B100_3590XCC-B100_2556XCC-B100_2541XCC-B100_3590XCC-B100_0208XCC-B100_0538
XCAM316273 XCAORF_1938XCAORF_1954XCAORF_0941XCAORF_1939XCAORF_1954XCAORF_0941XCAORF_4341XCAORF_3999
XCAM314565 XC_2529XC_2513XC_3469XC_2528XC_2513XC_3469XC_0197XC_0520
XCAM190485 XCC1702XCC1718XCC0763XCC1703XCC1718XCC0763XCC0188XCC0508
XAXO190486 XAC1721XAC1737XAC0816XAC1722XAC1737XAC0816XAC0207XAC0522
XAUT78245 XAUT_4402XAUT_4307XAUT_4401XAUT_4402XAUT_4307XAUT_4401XAUT_4400XAUT_4399
VVUL216895 VV1_1582VV1_1590VV1_2229VV1_1583VV1_1590VV1_1232VV1_0891VV1_1231
VVUL196600 VV2816VV2807VV2126VV2814VV2807VV3138VV0197VV3139
VPAR223926 VP2559VP2551VP2075VP2558VP2551VP2884VP0119VP2885
VEIS391735 VEIS_4360VEIS_0581VEIS_4361VEIS_0581VEIS_3027VEIS_3152VEIS_3026
VCHO345073 VC0395_A0056VC0395_A0069VC0395_A0624VC0395_A0057VC0395_A0069VC0395_A2686VC0395_A2320VC0395_A2685
VCHO VC0528VC0542VC1105VC0529VC0542VC0291VC2748VC0290
TDEN292415 TBD_1003TBD_2195TBD_2456TBD_1004TBD_2195TBD_2456TBD_2501TBD_2457
STYP99287 STM2930STM2830STM2174STM2929STM1514STM3384STM4006STM3385
SSP94122 SHEWANA3_1118SHEWANA3_3908SHEWANA3_2452SHEWANA3_1119SHEWANA3_3908SHEWANA3_0399SHEWANA3_0259SHEWANA3_0398
SSP644076 SCH4B_2279SCH4B_2277SCH4B_2280SCH4B_2279SCH4B_2277SCH4B_2280SCH4B_2281SCH4B_2282
SSP292414 TM1040_1364TM1040_1366TM1040_1363TM1040_1364TM1040_1366TM1040_1363TM1040_1362TM1040_1361
SSON300269 SSO_2895SSO_2844SSO_2196SSO_2894SSO_1591SSO_3401SSO_4041SSO_3402
SSED425104 SSED_1292SSED_4280SSED_2859SSED_1293SSED_4280SSED_4118SSED_0283SSED_4119
SPRO399741 SPRO_0826SPRO_0840SPRO_1337SPRO_0827SPRO_0840SPRO_4423SPRO_4882SPRO_4424
SPEA398579 SPEA_1187SPEA_0223SPEA_1501SPEA_1188SPEA_0223SPEA_0390SPEA_3929SPEA_0389
SONE211586 SO_3438SO_0272SO_2006SO_3437SO_0272SO_0394SO_4471SO_0393
SMEL266834 SMC01040SMC01039SMC01041SMC01040SMC01039SMC01041SMC01042SMC01043
SMED366394 SMED_1087SMED_1086SMED_1088SMED_1087SMED_1086SMED_1088SMED_1089SMED_1090
SLOI323850 SHEW_1207SHEW_0198SHEW_2242SHEW_1208SHEW_0198SHEW_0330SHEW_3560SHEW_0329
SLAC55218 SL1157_2681SL1157_2679SL1157_2682SL1157_2681SL1157_2679SL1157_2682SL1157_2683SL1157_2684
SHIGELLA YGBPYGADYOHIYGBBYDEJYHDGGLNLFIS
SHAL458817 SHAL_1224SHAL_4097SHAL_1583SHAL_1225SHAL_4097SHAL_3901SHAL_0342SHAL_3902
SFUM335543 SFUM_1637SFUM_2530SFUM_1813SFUM_1636SFUM_2530SFUM_1813SFUM_0854
SFLE373384 SFV_2751SFV_2805SFV_2215SFV_2752SFV_1553SFV_3285SFV_3632SFV_3286
SFLE198214 AAN44259.1AAN44215.1AAN43747.1AAN44258.1AAN43147.1AAN44762.1AAN45374.1AAN44763.1
SENT454169 SEHA_C3120SEHA_C3016SEHA_C2409SEHA_C3119SEHA_C1685SEHA_C3682SEHA_C4334SEHA_C3683
SENT321314 SCH_2862SCH_2763SCH_2191SCH_2861SCH_1532SCH_3322SCH_3898SCH_3323
SENT295319 SPA2786SPA2688SPA0677SPA2785SPA1341SPA3251SPA3847SPA3252
SENT220341 STY3055STY2951STY2404STY3054STY1547STY3564STY3875STY3565
SENT209261 T2831T2731T0681T2830T1435T3299T3615T3300
SDYS300267 SDY_2946SDY_2896SDY_2147SDY_2945SDY_1588SDY_3437SDY_3874SDY_3438
SDEN318161 SDEN_1198SDEN_0246SDEN_2388SDEN_1199SDEN_0246SDEN_0445SDEN_3457SDEN_0444
SDEG203122 SDE_1247SDE_1287SDE_1304SDE_1248SDE_1287SDE_0808SDE_0500SDE_0807
SBOY300268 SBO_2773SBO_2818SBO_3254SBO_2774SBO_1611SBO_3254SBO_3881SBO_3255
SBAL402882 SHEW185_3134SHEW185_4098SHEW185_2622SHEW185_3133SHEW185_4098SHEW185_3964SHEW185_0259SHEW185_3965
SBAL399599 SBAL195_3277SBAL195_4216SBAL195_2697SBAL195_3276SBAL195_4216SBAL195_4080SBAL195_0267SBAL195_4081
SACI56780 SYN_01401SYN_02030SYN_02436SYN_01400SYN_02030SYN_02436SYN_02215
RSPH349102 RSPH17025_1485RSPH17025_1482RSPH17025_1486RSPH17025_1484RSPH17025_1482RSPH17025_1486RSPH17025_1487RSPH17025_1488
RSPH349101 RSPH17029_1459RSPH17029_1462RSPH17029_1458RSPH17029_1460RSPH17029_1462RSPH17029_1458RSPH17029_1457RSPH17029_1456
RSPH272943 RSP_2835RSP_2833RSP_2836RSP_6071RSP_2833RSP_2836RSP_2837RSP_2838
RSOL267608 RSC1643RSC2770RSC1635RSC1644RSC2770RSC0506RSC1260RSC0505
RRUB269796 RRU_A1674RRU_A1870RRU_A1676RRU_A1674RRU_A1870RRU_A1676RRU_A1677RRU_A1678
RPOM246200 SPO_2092SPO_2089SPO_2090SPO_2092SPO_2089SPO_2088SPO_2087
RPAL316058 RPB_2885RPB_2886RPB_2884RPB_2885RPB_2886RPB_2884RPB_2883RPB_2882
RPAL316057 RPD_2587RPD_2586RPD_2588RPD_2587RPD_2586RPD_2588RPD_2589RPD_2590
RPAL316056 RPC_2575RPC_2574RPC_2576RPC_2575RPC_2574RPC_2576RPC_2577RPC_2578
RPAL316055 RPE_2755RPE_2754RPE_2756RPE_2755RPE_2754RPE_2756RPE_2757RPE_2758
RPAL258594 RPA2590RPA2589RPA2591RPA2590RPA2589RPA2591RPA2592RPA2593
RMET266264 RMET_1954RMET_3049RMET_0429RMET_1953RMET_3049RMET_0429RMET_2060RMET_0428
RLEG216596 RL2254RL2253RL2255RL2254RL2253RL2255RL2256RL2257
RFER338969 RFER_1332RFER_0076RFER_3024RFER_1332RFER_0076RFER_1580RFER_2981RFER_1581
REUT381666 H16_A1456H16_A3156H16_A1443H16_A1457H16_A3156H16_A0503H16_A2333H16_A0502
REUT264198 REUT_A1361REUT_A2850REUT_A1351REUT_A1362REUT_A2850REUT_A0489REUT_A2055REUT_A0488
RETL347834 RHE_CH01945RHE_CH01944RHE_CH01946RHE_CH01945RHE_CH01944RHE_CH01946RHE_CH01947RHE_CH01948
RDEN375451 RD1_2766RD1_2769RD1_2765RD1_2767RD1_2769RD1_2765RD1_2764RD1_2763
PTHE370438 PTH_0289PTH_1300PTH_0259PTH_0290PTH_1300PTH_0259PTH_1422PTH_0508
PSYR223283 PSPTO_1556PSPTO_4034PSPTO_2169PSPTO_1560PSPTO_4034PSPTO_4864PSPTO_0353PSPTO_4865
PSYR205918 PSYR_1365PSYR_1377PSYR_1979PSYR_1369PSYR_1377PSYR_4404PSYR_4821PSYR_4405
PSTU379731 PST_1559PST_1507PST_1768PST_1566PST_1507PST_3277PST_0350PST_3278
PSP312153 PNUC_0930PNUC_0221PNUC_1875PNUC_0931PNUC_0221PNUC_1875PNUC_1254PNUC_1876
PSP296591 BPRO_2716BPRO_4476BPRO_3425BPRO_2715BPRO_4476BPRO_1130BPRO_1809BPRO_1131
PPUT76869 PPUTGB1_1168PPUTGB1_1230PPUTGB1_1512PPUTGB1_1172PPUTGB1_3003PPUTGB1_4873PPUTGB1_5100PPUTGB1_4874
PPUT351746 PPUT_4163PPUT_4089PPUT_3779PPUT_4159PPUT_4089PPUT_4695PPUT_4922PPUT_4696
PPUT160488 PP_1614PP_1628PP_1981PP_1618PP_3298PP_4820PP_5047PP_4821
PPRO298386 PBPRA3077PBPRA3069PBPRA2613PBPRA3076PBPRA3069PBPRA3410PBPRA3494PBPRA3411
PNAP365044 PNAP_2549PNAP_3667PNAP_1302PNAP_2548PNAP_3667PNAP_3360PNAP_2778PNAP_3359
PMEN399739 PMEN_3031PMEN_3016PMEN_2727PMEN_3026PMEN_2276PMEN_0710PMEN_4143PMEN_0709
PLUM243265 PLU0713PLU1248PLU1512PLU0714PLU1248PLU4088PLU0236PLU4089
PING357804 PING_0672PING_3382PING_2279PING_0673PING_3382PING_3215PING_3487PING_3216
PHAL326442 PSHAA0684PSHAA0693PSHAA1195PSHAA0685PSHAA0693PSHAA0347PSHAA0164PSHAA0346
PFLU220664 PFL_1198PFL_1230PFL_2059PFL_1202PFL_4720PFL_0668PFL_0378PFL_0667
PFLU216595 PFLU1293PFLU1188PFLU4202PFLU1297PFLU1188PFLU0614PFLU0344PFLU0613
PFLU205922 PFL_1123PFL_1174PFL_1882PFL_1127PFL_1174PFL_0615PFL_0340PFL_0614
PENT384676 PSEEN4198PSEEN4129PSEEN1646PSEEN4194PSEEN4129PSEEN4861PSEEN0387PSEEN4862
PCAR338963 PCAR_0103PCAR_2403PCAR_1992PCAR_0102PCAR_2403PCAR_1992PCAR_1993PCAR_1994
PATL342610 PATL_3857PATL_3262PATL_2915PATL_3858PATL_3262PATL_0270PATL_1027PATL_0269
PAER208964 PA3633PA3618PA3129PA3627PA2141PA4852PA5124PA4853
PAER208963 PA14_17340PA14_17520PA14_23640PA14_17420PA14_36880PA14_64180PA14_67670PA14_64190
OCAR504832 OCAR_6093OCAR_6092OCAR_6094OCAR_6093OCAR_6092OCAR_6094OCAR_6095OCAR_6096
OANT439375 OANT_2069OANT_2068OANT_2070OANT_2069OANT_2068OANT_2070OANT_2071OANT_2072
NWIN323098 NWI_1442NWI_1441NWI_1443NWI_1442NWI_1441NWI_1443NWI_1444NWI_1445
NMUL323848 NMUL_A2127NMUL_A0015NMUL_A0131NMUL_A2126NMUL_A0015NMUL_A0131NMUL_A0132
NMEN374833 NMCC_1418NMCC_0044NMCC_0943NMCC_1417NMCC_0044NMCC_1327NMCC_1326
NMEN272831 NMC1442NMC0019NMC0986NMC1441NMC0019NMC1354NMC1353
NMEN122587 NMA1713NMA0289NMA1207NMA1712NMA0289NMA1633NMA1632
NMEN122586 NMB_1513NMB_0043NMB_0999NMB_1512NMB_0043NMB_1421NMB_1420
NHAM323097 NHAM_1834NHAM_1833NHAM_1835NHAM_1834NHAM_1833NHAM_1835NHAM_1836NHAM_1837
NGON242231 NGO0972NGO2058NGO0894NGO0971NGO2058NGO0151NGO0152
NEUT335283 NEUT_1525NEUT_2521NEUT_1208NEUT_1300NEUT_2521NEUT_1208NEUT_1209
NEUR228410 NE1412NE2561NE0874NE1402NE2561NE0874NE0875
NARO279238 SARO_1925SARO_1923SARO_1926SARO_1925SARO_1923SARO_1926SARO_1927SARO_1928
MTHE264732 MOTH_2487MOTH_0735MOTH_0147MOTH_2486MOTH_0735MOTH_0147MOTH_1138
MSP409 M446_5927M446_5926M446_5928M446_5927M446_5926M446_5928M446_5929M446_5930
MSP400668 MMWYL1_1301MMWYL1_3733MMWYL1_3625MMWYL1_1302MMWYL1_3733MMWYL1_2985MMWYL1_0735MMWYL1_2986
MSP266779 MESO_1621MESO_1622MESO_1620MESO_1621MESO_1622MESO_1620MESO_1619MESO_1618
MPET420662 MPE_A1570MPE_A0212MPE_A0486MPE_A1571MPE_A0212MPE_A0486MPE_A2074
MMAG342108 AMB2363AMB2548AMB2363AMB2548AMB2365AMB2366AMB2367
MLOT266835 MLL0395MLL0394MLL0395MLL0394MLR0396MLR0397MLR0398
MFLA265072 MFLA_1116MFLA_0571MFLA_0351MFLA_1117MFLA_0571MFLA_0351MFLA_2449MFLA_0350
MEXT419610 MEXT_2817MEXT_2816MEXT_2818MEXT_2817MEXT_2816MEXT_2818MEXT_2819MEXT_2820
MCAP243233 MCA_2517MCA_0385MCA_1745MCA_2518MCA_0385MCA_1745MCA_2542MCA_1746
MAQU351348 MAQU_0923MAQU_2083MAQU_1057MAQU_0924MAQU_2083MAQU_3448MAQU_0767MAQU_3449
LCHO395495 LCHO_2295LCHO_3921LCHO_2126LCHO_2293LCHO_3921LCHO_0534LCHO_3583LCHO_0533
KPNE272620 GKPORF_B2440GKPORF_B2359GKPORF_B1864GKPORF_B2439GKPORF_B0655GKPORF_B3008GKPORF_B3518GKPORF_B3009
JSP375286 MMA_1409MMA_0607MMA_1410MMA_1654MMA_0306MMA_1080MMA_0307
JSP290400 JANN_2235JANN_2233JANN_2236JANN_2235JANN_2233JANN_2236JANN_2237JANN_2238
ILOI283942 IL0752IL0743IL2288IL0751IL0743IL2288IL2436IL2289
HMOD498761 HM1_1354HM1_2373HM1_0661HM1_1354HM1_2373HM1_0661HM1_1290
HCHE349521 HCH_01869HCH_05233HCH_06009HCH_01870HCH_05233HCH_06009HCH_01034HCH_06010
HARS204773 HEAR1912HEAR0640HEAR1911HEAR0640HEAR0253HEAR0950HEAR0254
GURA351605 GURA_4163GURA_0217GURA_0914GURA_4164GURA_0217GURA_0914GURA_0915GURA_0916
GSUL243231 GSU_3368GSU_0143GSU_1005GSU_3367GSU_0143GSU_1005GSU_1004GSU_1003
GMET269799 GMET_0060GMET_0196GMET_2561GMET_0059GMET_0196GMET_2561GMET_2562GMET_2563
GBET391165 GBCGDNIH1_1019GBCGDNIH1_1192GBCGDNIH1_1228GBCGDNIH1_1019GBCGDNIH1_1192GBCGDNIH1_1228GBCGDNIH1_1227GBCGDNIH1_1226
ESP42895 ENT638_3218ENT638_3175ENT638_2742ENT638_3217ENT638_3132ENT638_3699ENT638_4097ENT638_3700
EFER585054 EFER_0321EFER_0374EFER_2225EFER_0322EFER_1538EFER_3239EFER_3904EFER_3240
ECOO157 YGBPYGADYOHIYGBBYDEJYHDGGLNLFIS
ECOL83334 ECS3601ECS3557ECS3026ECS3600ECS2146ECS4132ECS4791ECS4133
ECOL585397 ECED1_3203ECED1_3149ECED1_2587ECED1_3202ECED1_3149ECED1_3919ECED1_4570ECED1_3920
ECOL585057 ECIAI39_2936ECIAI39_2886ECIAI39_2279ECIAI39_2935ECIAI39_2886ECIAI39_3760ECIAI39_3132ECIAI39_3761
ECOL585056 ECUMN_3071ECUMN_3021ECUMN_2473ECUMN_3070ECUMN_3021ECUMN_3734ECUMN_4392ECUMN_3735
ECOL585055 EC55989_3019EC55989_2962EC55989_2390EC55989_3018EC55989_1678EC55989_3674EC55989_4344EC55989_3675
ECOL585035 ECS88_3017ECS88_2963ECS88_2286ECS88_3016ECS88_2963ECS88_3645ECS88_4319ECS88_3646
ECOL585034 ECIAI1_2848ECIAI1_2792ECIAI1_2217ECIAI1_2847ECIAI1_1556ECIAI1_3403ECIAI1_4068ECIAI1_3404
ECOL481805 ECOLC_0965ECOLC_1012ECOLC_1508ECOLC_0966ECOLC_2121ECOLC_0446ECOLC_4147ECOLC_0445
ECOL469008 ECBD_0977ECBD_1025ECBD_1518ECBD_0978ECBD_2102ECBD_0485ECBD_4158ECBD_0484
ECOL439855 ECSMS35_2872ECSMS35_2823ECSMS35_2287ECSMS35_2871ECSMS35_2823ECSMS35_3555ECSMS35_4254ECSMS35_3556
ECOL413997 ECB_02597ECB_02550ECB_02069ECB_02596ECB_01496ECB_03118ECB_03754ECB_03119
ECOL409438 ECSE_2999ECSE_2948ECSE_2407ECSE_2998ECSE_1633ECSE_3541ECSE_4152ECSE_3542
ECOL405955 APECO1_3776APECO1_3826APECO1_4410APECO1_3777APECO1_3826APECO1_3178APECO1_2593APECO1_3177
ECOL364106 UTI89_C3118UTI89_C3062UTI89_C2413UTI89_C3117UTI89_C3062UTI89_C3702UTI89_C4458UTI89_C3703
ECOL362663 ECP_2729ECP_2660ECP_2179ECP_2728ECP_2660ECP_3353ECP_4080ECP_3354
ECOL331111 ECE24377A_3048ECE24377A_2984ECE24377A_2429ECE24377A_3047ECE24377A_1746ECE24377A_3745ECE24377A_4391ECE24377A_3746
ECOL316407 ECK2742:JW2717:B2747ECK2695:JW2670:B2700ECK2133:JW2128:B2140ECK2741:JW2716:B2746ECK1530:JW1530:B1537ECK3247:JW3228:B3260ECK3862:JW3840:B3869ECK3248:JW3229:B3261
ECOL199310 C3314C3254C2672C3313C3254C4026C4818C4027
ECAR218491 ECA3535ECA3370ECA2799ECA3534ECA3370ECA0256ECA0028ECA0255
DSHI398580 DSHI_1577DSHI_1579DSHI_1576DSHI_1577DSHI_1579DSHI_1576DSHI_1575DSHI_1574
DRED349161 DRED_0187DRED_1922DRED_0172DRED_0188DRED_1922DRED_0172DRED_2000
DOLE96561 DOLE_2147DOLE_1570DOLE_2866DOLE_1666DOLE_1570DOLE_2866DOLE_0426
DHAF138119 DSY0443DSY1955DSY0217DSY0444DSY1955DSY0217DSY4412
DARO159087 DARO_1973DARO_3874DARO_2886DARO_1974DARO_3874DARO_3665DARO_3759DARO_3666
CVIO243365 CV_1258CV_2370CV_2329CV_1259CV_2370CV_0544CV_3591CV_0545
CSP78 CAUL_2603CAUL_2602CAUL_2604CAUL_2603CAUL_2602CAUL_2604CAUL_2605CAUL_2606
CSP501479 CSE45_1378CSE45_1376CSE45_1379CSE45_1378CSE45_1376CSE45_1379CSE45_1380CSE45_1381
CSAL290398 CSAL_2638CSAL_0622CSAL_0691CSAL_2637CSAL_0622CSAL_2287CSAL_0245CSAL_2288
CPSY167879 CPS_1072CPS_3682CPS_0906CPS_1073CPS_3682CPS_0550CPS_0398CPS_0551
CJAP155077 CJA_2223CJA_2231CJA_1386CJA_2222CJA_2231CJA_2745CJA_3536CJA_2746
CHYD246194 CHY_2342CHY_1165CHY_2369CHY_2341CHY_1165CHY_2369CHY_2022
CDES477974 DAUD_0186DAUD_0842DAUD_0127DAUD_0186DAUD_0842DAUD_0127DAUD_0675
CAULO CC1738CC1737CC1739CC1738CC1737CC1739CC1740CC1741
BVIE269482 BCEP1808_1870BCEP1808_0602BCEP1808_1869BCEP1808_0602BCEP1808_0658BCEP1808_2227BCEP1808_0657
BTHA271848 BTH_I2089BTH_I1186BTH_I1252BTH_I2090BTH_I1186BTH_I1252BTH_I1845BTH_I1251
BSUI204722 BR_1120BR_1121BR_1120BR_1121BR_1119BR_1118BR_1117
BSP376 BRADO3869BRADO3870BRADO3868BRADO3869BRADO3870BRADO3868BRADO3867BRADO3866
BSP36773 BCEP18194_A5254BCEP18194_A3710BCEP18194_A5253BCEP18194_A3710BCEP18194_A3779BCEP18194_A5457BCEP18194_A3778
BPSE320373 BURPS668_2358BURPS668_3442BURPS668_2357BURPS668_3442BURPS668_3360BURPS668_2633BURPS668_3361
BPSE272560 BPSL2099BPSL2962BPSL2098BPSL2962BPSL2894BPSL2317BPSL2895
BPET94624 BPET1695BPET3953BPET1696BPET3953BPET0908BPET2275BPET0907
BPER257313 BP0865BP3489BP0866BP3489BP3414BP1597BP3415
BPAR257311 BPP3366BPP0862BPP3365BPP0862BPP3564BPP2987BPP3565
BOVI236 GBOORF1120GBOORF1121GBOORF1119GBOORF1120GBOORF1121GBOORF1119GBOORF1118GBOORF1117
BMEL359391 BAB1_1143BAB1_1144BAB1_1142BAB1_1143BAB1_1144BAB1_1142BAB1_1141BAB1_1140
BMEL224914 BMEI0863BMEI0862BMEI0864BMEI0863BMEI0862BMEI0864BMEI0865BMEI0866
BMAL320389 BMA10247_1259BMA10247_3306BMA10247_1258BMA10247_3306BMA10247_2538BMA10247_1523BMA10247_2537
BMAL320388 BMASAVP1_A1987BMASAVP1_A0399BMASAVP1_A1986BMASAVP1_A0399BMASAVP1_A0272BMASAVP1_A2251BMASAVP1_A0271
BMAL243160 BMA_1490BMA_2480BMA_1489BMA_2480BMA_2358BMA_1741BMA_2357
BJAP224911 BLL4485BLL4484BLR4486BLL4485BLL4484BLR4486BLR4487BLR4488
BFRA295405 BF3962BF2430BF4566BF4006BF2430BF4566BF1592
BCEN331272 BCEN2424_1943BCEN2424_0628BCEN2424_1942BCEN2424_0628BCEN2424_0693BCEN2424_2148BCEN2424_0692
BCAN483179 BCAN_A1139BCAN_A1140BCAN_A1138BCAN_A1139BCAN_A1140BCAN_A1138BCAN_A1137BCAN_A1136
BBRO257310 BB3817BB0956BB3816BB0956BB3999BB2953BB4000
BAMB398577 BAMMC406_1858BAMMC406_0553BAMMC406_1857BAMMC406_0553BAMMC406_0612BAMMC406_2058BAMMC406_0611
BAMB339670 BAMB_1931BAMB_0529BAMB_1930BAMB_0529BAMB_0586BAMB_2185BAMB_0585
BABO262698 BRUAB1_1126BRUAB1_1127BRUAB1_1125BRUAB1_1126BRUAB1_1127BRUAB1_1125BRUAB1_1124BRUAB1_1123
AVAR240292 AVA_2414AVA_2078AVA_0645AVA_1811AVA_2078AVA_0645AVA_1343
ASP62928 AZO1682AZO0508AZO1522AZO1683AZO0508AZO2892AZO0736AZO2893
ASP232721 AJS_3156AJS_0354AJS_3192AJS_3155AJS_0354AJS_3586AJS_1191AJS_3585
ASAL382245 ASA_3473ASA_3808ASA_2091ASA_3472ASA_3808ASA_0808ASA_4122ASA_0807
AORE350688 CLOS_0463CLOS_1943CLOS_0447CLOS_0464CLOS_1943CLOS_0447CLOS_1078
AMET293826 AMET_4506AMET_1704AMET_4527AMET_4505AMET_1704AMET_4527AMET_3256
AHYD196024 AHA_0823AHA_3717AHA_2208AHA_0824AHA_3717AHA_3510AHA_0275AHA_3511
AEHR187272 MLG_1837MLG_1484MLG_1836MLG_1484MLG_1399MLG_0015MLG_0610
ADEH290397 ADEH_1272ADEH_3614ADEH_3790ADEH_1272ADEH_3790ADEH_1907ADEH_3791
ACRY349163 ACRY_0551ACRY_1911ACRY_2031ACRY_1911ACRY_2032ACRY_2033ACRY_2034
ACAU438753 AZC_3089AZC_3090AZC_3088AZC_3089AZC_3090AZC_3088AZC_3087AZC_3086
ABOR393595 ABO_1166ABO_1802ABO_2162ABO_1167ABO_1802ABO_2013ABO_2260ABO_2014
ABAU360910 BAV1060BAV0574BAV1059BAV0574BAV2774BAV1930BAV2775
AAVE397945 AAVE_1581AAVE_0429AAVE_1255AAVE_1582AAVE_0429AAVE_0894AAVE_1444AAVE_0895


Organism features enriched in list (features available for 193 out of the 207 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00014591692
Disease:Bubonic_plague 0.001248766
Disease:Dysentery 0.001248766
Disease:Gastroenteritis 0.00121241013
Endospores:No 1.211e-1331211
Endospores:Yes 0.0004038753
GC_Content_Range4:0-40 6.898e-443213
GC_Content_Range4:40-60 6.639e-10108224
GC_Content_Range4:60-100 8.877e-1282145
GC_Content_Range7:30-40 9.573e-313166
GC_Content_Range7:50-60 1.066e-1369107
GC_Content_Range7:60-70 5.975e-1481134
Genome_Size_Range5:2-4 2.017e-641197
Genome_Size_Range5:4-6 2.937e-32124184
Genome_Size_Range5:6-10 0.00006652847
Genome_Size_Range9:2-3 1.258e-717120
Genome_Size_Range9:4-5 6.035e-136396
Genome_Size_Range9:5-6 3.155e-146188
Genome_Size_Range9:6-8 3.545e-62638
Gram_Stain:Gram_Neg 4.036e-33174333
Gram_Stain:Gram_Pos 5.874e-245150
Habitat:Host-associated 0.000453951206
Habitat:Multiple 0.000027480178
Habitat:Specialized 0.0033466953
Motility:No 1.039e-1513151
Motility:Yes 2.738e-14131267
Optimal_temp.:25-30 1.721e-81819
Optimal_temp.:37 0.003434224106
Oxygen_Req:Anaerobic 0.000028017102
Oxygen_Req:Facultative 0.000015189201
Shape:Coccus 0.00003281282
Shape:Rod 4.777e-17160347
Shape:Sphere 0.0040883119
Shape:Spiral 0.0001141234
Temp._range:Hyperthermophilic 0.0009315123
Temp._range:Mesophilic 0.0055140167473
Temp._range:Thermophilic 0.0019617435



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 133
Effective number of orgs (counting one per cluster within 468 clusters): 96

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RMAS416276 ncbi Rickettsia massiliae MTU50
PTOR263820 ncbi Picrophilus torridus DSM 97900
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G371
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/31
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G7423   G7409   EG12022   EG11816   EG11645   EG11311   EG10387   EG10317   
UURE95667 UU083
UURE95664 UUR10_0089
UPAR505682 UPA3_0082
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA0171
TTHE262724 TT_C1815
TPEN368408
TPAL243276 TP_0512
TKOD69014
TACI273075
STOK273063
STHE322159 STER_0231
STHE299768 STR0181
STHE264199 STU0181
SSUI391296 SSU98_1975
SSUI391295 SSU05_1970
SSOL273057
SSAP342451
SPYO370554 MGAS10750_SPY0111
SPYO370553 MGAS2096_SPY0107
SPYO370552 MGAS10270_SPY0106
SPYO370551 MGAS9429_SPY0105
SPYO319701 M28_SPY0102
SPYO293653 M5005_SPY0104
SPYO286636 M6_SPY0153
SPYO198466 SPYM3_0095
SPYO193567 SPS0097
SPYO186103 SPYM18_0122
SPYO160490 SPY0122
SPNE487214 SPH_2384
SPNE487213 SPT_2204
SPNE171101 SPR1994
SPNE170187
SPNE1313 SPJ_2216
SMUT210007 SMU_187C
SMAR399550
SHAE279808
SEPI176280
SEPI176279
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SAGA211110 GBS1866
SAGA208435 SAG_1825
SAGA205921 SAK_1845
SACI330779
RMAS416276
PTOR263820
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
OIHE221109 OB1680
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPEN272633 MYPE6400
MMOB267748
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273 MG_115
MCAP340047 MCAP_0837
MBUR259564 MBUR_2154
MART243272
MAEO419665
LSAK314315 LSA1595
LMES203120
LLAC272623 L19272
LLAC272622 LACR_2221
LJOH257314 LJ_0286
LHEL405566 LHV_0298
LGAS324831 LGAS_0279
LDEL390333 LDB0372
LDEL321956 LBUL_0327
IHOS453591
HBUT415426
DNOD246195 DNO_0423
CVES412965 COSY_0697
CTRA471473 CTLON_0718
CTRA471472 CTL0722
CSUL444179
CPNE182082 CPB0603
CPNE138677 CPJ0579
CPNE115713 CPN0579
CPNE115711 CP_0169
CMUR243161 TC_0747
CMET456442
CMAQ397948
CKOR374847
CFEL264202 CF0845
CCAV227941 CCA_00162
CBLO203907
CABO218497 CAB160
BTUR314724
BLON206672 BL0324
BHER314723
BGAR290434
BBUR224326
BAPH372461 BCC_252
BAFZ390236
AYEL322098
AURANTIMONAS
APER272557
AFUL224325


Organism features enriched in list (features available for 127 out of the 133 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00070303292
Arrangment:Clusters 5.247e-91517
Arrangment:Singles 0.000706347286
Disease:Pharyngitis 4.249e-688
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 3.692e-81111
Disease:Wide_range_of_infections 3.692e-81111
Disease:bronchitis_and_pneumonitis 4.249e-688
Endospores:No 1.318e-1990211
Endospores:Yes 0.0000182153
GC_Content_Range4:0-40 5.019e-1483213
GC_Content_Range4:60-100 3.456e-125145
GC_Content_Range7:0-30 0.00047002047
GC_Content_Range7:30-40 5.198e-963166
GC_Content_Range7:50-60 0.000397411107
GC_Content_Range7:60-70 7.936e-115134
Genome_Size_Range5:0-2 1.986e-2481155
Genome_Size_Range9:0-1 2.648e-102127
Genome_Size_Range9:1-2 1.816e-1360128
Genome_Size_Range9:2-3 0.000029443120
Genome_Size_Range9:3-4 3.396e-6377
Gram_Stain:Gram_Neg 8.416e-2028333
Gram_Stain:Gram_Pos 3.394e-653150
Habitat:Host-associated 3.519e-769206
Habitat:Multiple 3.673e-717178
Habitat:Specialized 0.00254292053
Habitat:Terrestrial 0.0036096131
Motility:No 4.723e-1061151
Motility:Yes 4.654e-832267
Optimal_temp.:- 3.126e-634257
Optimal_temp.:30-35 0.000538167
Optimal_temp.:30-37 3.796e-71418
Optimal_temp.:85 0.002169344
Oxygen_Req:Aerobic 7.784e-817185
Oxygen_Req:Anaerobic 0.002238433102
Oxygen_Req:Facultative 0.000549659201
Pathogenic_in:Human 0.007437557213
Pathogenic_in:Swine 0.000460855
Shape:Coccus 3.865e-205382
Shape:Irregular_coccus 1.466e-61317
Shape:Rod 1.105e-2030347
Shape:Sphere 0.00001071319
Temp._range:Hyperthermophilic 6.341e-81723



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 4
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
PTHE370438 ncbi Pelotomaculum thermopropionicum SI 0.004590211208
NWIN323098 ncbi Nitrobacter winogradskyi Nb-255 0.006883211788
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-1 0.009359812248
GBET391165 ncbi Granulibacter bethesdensis CGDNIH1 0.009671012298


Names of the homologs of the genes in the group in each of these orgs
  G7423   G7409   EG12022   EG11816   EG11645   EG11311   EG10387   EG10317   
PTHE370438 PTH_0289PTH_1300PTH_0259PTH_0290PTH_1300PTH_0259PTH_1422PTH_0508
NWIN323098 NWI_1442NWI_1441NWI_1443NWI_1442NWI_1441NWI_1443NWI_1444NWI_1445
PSP312153 PNUC_0930PNUC_0221PNUC_1875PNUC_0931PNUC_0221PNUC_1875PNUC_1254PNUC_1876
GBET391165 GBCGDNIH1_1019GBCGDNIH1_1192GBCGDNIH1_1228GBCGDNIH1_1019GBCGDNIH1_1192GBCGDNIH1_1228GBCGDNIH1_1227GBCGDNIH1_1226


Organism features enriched in list (features available for 4 out of the 4 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Chronic_granulomatous_disease 0.006861111



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951650.7364
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491390.7149
GLYCOCAT-PWY (glycogen degradation I)2461800.6850
TYRFUMCAT-PWY (tyrosine degradation I)1841460.6339
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001910.6228
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251610.6118
PWY-4041 (γ-glutamyl cycle)2791810.6051
PWY-5918 (heme biosynthesis I)2721780.6021
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181560.5971
PWY-1269 (CMP-KDO biosynthesis I)3251940.5868
PWY-5028 (histidine degradation II)1301120.5770
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831370.5701
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861780.5674
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911790.5622
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961800.5572
P344-PWY (acrylonitrile degradation)2101470.5567
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391940.5567
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911380.5509
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761310.5489
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481950.5447
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551630.5425
PWY-5148 (acyl-CoA hydrolysis)2271520.5422
PWY-5913 (TCA cycle variation IV)3011780.5318
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491590.5306
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491590.5306
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351090.5306
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381100.5264
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901730.5236
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001760.5205
AST-PWY (arginine degradation II (AST pathway))1201000.5196
GALACTARDEG-PWY (D-galactarate degradation I)1511150.5155
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561170.5126
GALACTCAT-PWY (D-galactonate degradation)104900.5067
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651940.5031
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982030.5020
GLUCARDEG-PWY (D-glucarate degradation I)1521130.4959
REDCITCYC (TCA cycle variation II)1741230.4951
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911300.4918
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291810.4893
GLUCONSUPER-PWY (D-gluconate degradation)2291450.4871
PWY-5340 (sulfate activation for sulfonation)3851960.4775
PWY-46 (putrescine biosynthesis III)1381040.4772
PWY-6268 (adenosylcobalamin salvage from cobalamin)3171750.4749
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)1351020.4727
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222040.4650
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111710.4612
P601-PWY (D-camphor degradation)95800.4591
PWY-3162 (tryptophan degradation V (side chain pathway))94790.4548
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96800.4540
PWY-5964 (molybdopterin guanine dinucleotide biosynthesis)2901620.4485
PWY-6087 (4-chlorocatechol degradation)2231370.4472
ARGSYNBSUB-PWY (arginine biosynthesis II (acetyl cycle))3831910.4464
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121320.4428
2ASDEG-PWY (orthanilate degradation)72650.4378
PWY-5507 (adenosylcobalamin biosynthesis I (early cobalt insertion))2991630.4342
GLYSYN-THR-PWY (glycine biosynthesis IV)2151320.4341
PWY-5386 (methylglyoxal degradation I)3051650.4340
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112860.4329
PWY-5938 ((R)-acetoin biosynthesis I)3761870.4324
GALACTITOLCAT-PWY (galactitol degradation)73650.4317
PWY-2361 (3-oxoadipate degradation)82700.4310
PWY0-981 (taurine degradation IV)106820.4242
P381-PWY (adenosylcobalamin biosynthesis II (late cobalt incorporation))3711840.4217
PWY0-862 (cis-dodecenoyl biosynthesis)3431750.4181
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161960.4180
PWY-5025 (IAA biosynthesis IV)92740.4172
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94750.4167
PWY-6193 (3-chlorocatechol degradation II (ortho))1941210.4161
PWY-6389 ((S)-acetoin biosynthesis)3681820.4139
PWY0-321 (phenylacetate degradation I (aerobic))1551040.4138
PWY-561 (superpathway of glyoxylate cycle)1621070.4131
GLYOXYLATE-BYPASS (glyoxylate cycle)1691100.4127
DAPLYSINESYN-PWY (lysine biosynthesis I)3421730.4066
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)1781130.4063
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891550.4030
VALDEG-PWY (valine degradation I)2901550.4006
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261670.4004



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7409   EG12022   EG11816   EG11645   EG11311   EG10387   EG10317   
G74230.9992240.9992330.9999890.9991160.9993480.998830.998737
G74090.9986440.9992630.9999990.9989750.9987170.998924
EG120220.9992310.998510.9998930.9990540.999341
EG118160.9991990.9993210.9989710.998842
EG116450.9987960.9986720.998829
EG113110.9993220.999933
EG103870.999371
EG10317



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PAIRWISE BLAST SCORES:

  G7423   G7409   EG12022   EG11816   EG11645   EG11311   EG10387   EG10317   
G74230.0f0-------
G7409-0.0f0--2.4e-24---
EG12022--0.0f0--1.7e-25--
EG11816---0.0f0----
EG11645-6.5e-15--0.0f0---
EG11311-----0.0f0--
EG10387------0.0f0-
EG10317-------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- NONMEVIPP-PWY (methylerythritol phosphate pathway) (degree of match pw to cand: 0.222, degree of match cand to pw: 0.250, average score: 0.646)
  Genes in pathway or complex:
             0.1453 0.0021 G6237 (dxs) DXS-MONOMER (Dxs)
             0.8405 0.2893 EG12715 (dxr) DXPREDISOM-MONOMER (Dxr)
             0.3156 0.0018 EG10370 (ispG) EG10370-MONOMER (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase)
             0.3224 0.0627 EG11081 (ispH) EG11081-MONOMER (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase)
   *in cand* 0.9993 0.9987 G7423 (ispD) G7423-MONOMER (4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer)
             0.5447 0.0008 EG11294 (ispE) EG11294-MONOMER (IspE)
   *in cand* 0.9994 0.9988 EG11816 (ispF) EG11816-MONOMER (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer)
             0.6810 0.1955 G7508 (idi) IPPISOM-MONOMER (isopentenyl diphosphate isomerase)
             0.6373 0.2335 EG11328 (fdx) OX-FERREDOXIN (oxidized ferredoxin)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9992 0.9987 EG10317 (fis) PD00196 (Fis)
   *in cand* 0.9991 0.9987 EG10387 (glnL) PROTEIN-NRII (NtrB)
   *in cand* 0.9994 0.9988 EG11311 (dusB) EG11311-MONOMER (tRNA dihydrouridine synthase)
   *in cand* 0.9991 0.9985 EG11645 (ydeJ) EG11645-MONOMER (conserved protein)
   *in cand* 0.9992 0.9985 EG12022 (dusC) EG12022-MONOMER (tRNA dihydrouridine synthase)
   *in cand* 0.9992 0.9986 G7409 (ygaD) G7409-MONOMER (conserved protein)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10317 EG11311 (centered at EG10317)
G7409 (centered at G7409)
EG12022 (centered at EG12022)
EG11645 (centered at EG11645)
EG10387 (centered at EG10387)
EG11816 G7423 (centered at G7423)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7423   G7409   EG12022   EG11816   EG11645   EG11311   EG10387   EG10317   
418/623378/623316/623415/623376/623414/623251/623235/623
AAEO224324:0:Tyes257741-0741---
AAUR290340:2:Tyes---0-577--
AAVE397945:0:Tyes1134081011350456999457
ABAC204669:0:Tyes15821280157-0727-
ABAU360910:0:Tyes4870-4860220513552206
ABOR393595:0:Tyes0650101416508641113865
ABUT367737:0:Tyes-389-0389---
ACAU438753:0:Tyes34234210
ACEL351607:0:Tyes14481412-0----
ACRY349163:8:Tyes01365-14871365148814891490
ADEH290397:0:Tyes0236725460-25466442547
AEHR187272:0:Tyes18071459-1806145913740590
AFER243159:0:Tyes24161881-24151881-02588
AHYD196024:0:Tyes538332818955393328314703148
ALAI441768:0:Tyes--1176-01176--
AMAR234826:0:Tyes637-06365670--
AMAR329726:9:Tyes2588563015275630--
AMET293826:0:Tyes2803028272802028271539-
ANAE240017:0:Tyes---1282-0--
AORE350688:0:Tyes19151602015160628-
APHA212042:0:Tyes--06536430--
APLE416269:0:Tyes613-119614-0-1
APLE434271:0:Tno586-125587-0-1
ASAL382245:5:Tyes25532885123425522885131900
ASP1667:3:Tyes-737-0-614--
ASP232721:2:Tyes2714027482713031348283133
ASP62928:0:Tyes1210010441211024302332431
ASP62977:0:Tyes1104-01101-16075101503
ASP76114:2:Tyes31841333-3183133301751-
AVAR240292:3:Tyes177814450117514450705-
BABO262698:1:Tno34234210
BAMB339670:3:Tno14330-1432058169657
BAMB398577:3:Tno13160-1315059152458
BAMY326423:0:Tyes241582-25-01236-
BANT260799:0:Tno12-013-0--
BANT261594:2:Tno9-010-0--
BANT568206:2:Tyes9-010-02946-
BANT592021:2:Tno10-011-0--
BAPH198804:0:Tyes21--20---0
BAPH372461:0:Tyes-------0
BBAC264462:0:Tyes-4351160-435-27770
BBAC360095:0:Tyes0--0----
BBRO257310:0:Tyes28860-28850307320113074
BCAN483179:1:Tno34234210
BCEN331271:0:Tno215--216--0-
BCEN331271:2:Tno-0--065--
BCEN331272:3:Tyes13130-1312065151864
BCER226900:1:Tyes23-024-01356-
BCER288681:0:Tno12-013-01339-
BCER315749:1:Tyes9-010-02107-
BCER405917:1:Tyes11-012-01433-
BCER572264:1:Tno9-010-01291-
BCIC186490:0:Tyes1--0----
BCLA66692:0:Tyes24-025-0--
BFRA272559:1:Tyes121301831126301831--
BFRA295405:0:Tno24028513036245185130360-
BHAL272558:0:Tyes27--28-01779-
BHEN283166:0:Tyes10-10---
BJAP224911:0:Fyes10210234
BLIC279010:0:Tyes121768-13176801372-
BLON206672:0:Tyes0-------
BMAL243160:1:Tno1883-0883775222774
BMAL320388:1:Tno1682126-1681126119370
BMAL320389:1:Tyes12006-0200612512581250
BMEL224914:1:Tno10210234
BMEL359391:1:Tno34234210
BOVI236:1:Tyes34234210
BPAR257311:0:Tno23760-23750257420182575
BPER257313:0:Tyes02375-1237523066652307
BPET94624:0:Tyes7933082-7943082113730
BPSE272560:1:Tyes1877-0877809222810
BPSE320372:1:Tno-739--7396620663
BPSE320373:1:Tno11038-01038956263957
BPUM315750:0:Tyes131568-14-01262-
BQUI283165:0:Tyes10-10---
BSP107806:2:Tyes20--19---0
BSP36773:2:Tyes15690-1568070178169
BSP376:0:Tyes34234210
BSUB:0:Tyes241743-25174301384-
BSUI204722:1:Tyes34-34210
BSUI470137:1:Tno23-231-0
BTHA271848:1:Tno88106688206664465
BTHE226186:0:Tyes306602204302702204--
BTHU281309:1:Tno9-010-01245-
BTHU412694:1:Tno18-019-01235-
BTRI382640:1:Tyes10-10---
BVIE269482:7:Tyes12590-1258056161555
BWEI315730:4:Tyes24-025-0--
BXEN266265:0:Tyes-0--0---
CABO218497:0:Tyes0-------
CACE272562:1:Tyes275131522772031522772--
CAULO:0:Tyes10210234
CBEI290402:0:Tyes264709-192470903643-
CBLO291272:0:Tno0--1----
CBOT36826:1:Tno3401141341701413417--
CBOT441770:0:Tyes3361143337701433377--
CBOT441771:0:Tno3226145324201453242--
CBOT441772:1:Tno3436143345301433453--
CBOT498213:1:Tno3455148347101483471--
CBOT508765:1:Tyes303149016631490--
CBOT515621:2:Tyes3606150362201503622--
CBOT536232:0:Tno3706142372601423726--
CBUR227377:1:Tyes-680--680--0
CBUR360115:1:Tno-416--416--0
CBUR434922:2:Tno-0--0--724
CCAV227941:1:Tyes0-------
CCHL340177:0:Tyes7890971650097--
CCON360104:2:Tyes-12380221----
CCUR360105:0:Tyes-0-9090---
CDES477974:0:Tyes596710596710524-
CDIF272563:1:Tyes014003570114003570--
CDIP257309:0:Tyes65----0--
CEFF196164:0:Fyes1436---01375--
CFEL264202:1:Tyes0-------
CFET360106:0:Tyes-3430162----
CGLU196627:0:Tyes91----0--
CHOM360107:1:Tyes-0-260---
CHUT269798:0:Tyes269221320277321320--
CHYD246194:0:Tyes113901158113801158833-
CJAP155077:0:Tyes8148220813822133421191335
CJEI306537:0:Tyes----7860--
CJEJ192222:0:Tyes---1435-0--
CJEJ195099:0:Tno---1609-0--
CJEJ354242:2:Tyes---1389-0--
CJEJ360109:0:Tyes---1714-0--
CJEJ407148:0:Tno---1426-0--
CKLU431943:1:Tyes173195-354331950--
CMIC31964:2:Tyes1117--1117-0--
CMIC443906:2:Tyes926--926-0--
CMUR243161:1:Tyes0-------
CNOV386415:0:Tyes1370-2163095--
CPEL335992:0:Tyes---20---
CPER195102:1:Tyes23690-224602416--
CPER195103:0:Tno25270-241502564--
CPER289380:3:Tyes22220-210902259--
CPHY357809:0:Tyes02079722945207972--
CPNE115711:1:Tyes0-------
CPNE115713:0:Tno0-------
CPNE138677:0:Tno0-------
CPNE182082:0:Tno0-------
CPRO264201:0:Fyes0-1281---1062-
CPSY167879:0:Tyes660319549966131951520153
CRUT413404:0:Tyes2890--0--491
CSAL290398:0:Tyes24443884592443388209202093
CSP501479:8:Fyes20320345
CSP78:2:Tyes10210234
CTEP194439:0:Tyes0703605281703605--
CTET212717:0:Tyes2220138-241380--
CTRA471472:0:Tyes0-------
CTRA471473:0:Tno0-------
CVES412965:0:Tyes0-------
CVIO243365:0:Tyes735187318327361873031331
DARO159087:0:Tyes0190491111904169417901695
DDES207559:0:Tyes16361366-16361366-0-
DETH243164:0:Tyes01190-1--65-
DGEO319795:1:Tyes104-0-----
DHAF138119:0:Tyes23517750236177504247-
DNOD246195:0:Tyes-----0--
DOLE96561:0:Tyes1740115724731253115724730-
DPSY177439:2:Tyes02772-02772-2706-
DRAD243230:3:Tyes2330-21700----
DRED349161:0:Tyes231767024176701842-
DSHI398580:5:Tyes35235210
DSP216389:0:Tyes01071-1----
DSP255470:0:Tno0997-1--1326-
DVUL882:1:Tyes4190-4190-2336-
ECAN269484:0:Tyes1--0842218--
ECAR218491:0:Tyes355733862792355633862410240
ECHA205920:0:Tyes144--1430716--
ECOL199310:0:Tno6335750632575133221131333
ECOL316407:0:Tno1205115860712040171118581712
ECOL331111:6:Tno1249118766312480192325451924
ECOL362663:0:Tno5544850553485117718951178
ECOL364106:1:Tno7026460701646128620291287
ECOL405955:2:Tyes6576020656602123218371233
ECOL409438:6:Tyes1394134378513930194425771945
ECOL413997:0:Tno1114106757311130163922881640
ECOL439855:4:Tno5645150563515121918871220
ECOL469008:0:Tno49654410494971621136700
ECOL481805:0:Tno52256910765231678137170
ECOL585034:0:Tno1274122265512730182624661827
ECOL585035:0:Tno7136600712660132519721326
ECOL585055:0:Tno1325127070113240196726241968
ECOL585056:2:Tno6025550601555125919111260
ECOL585057:0:Tno659611065861114978661498
ECOL585397:0:Tno6135600612560131519501316
ECOL83334:0:Tno1497145390214960203927252040
ECOLI:0:Tno1236118861912350175423741755
ECOO157:0:Tno17321683113217310227629712277
EFAE226185:3:Tyes-2936-0-209--
EFER585054:1:Tyes052188411202291235502913
ELIT314225:0:Tyes-5-35210
ERUM254945:0:Tyes---0873253--
ERUM302409:0:Tno---0868253--
ESP42895:1:Tyes48944604883989711378972
FALN326424:0:Tyes7680-767----
FJOH376686:0:Tyes-3935--39350--
FMAG334413:1:Tyes1--0395---
FNOD381764:0:Tyes01432--1432---
FNUC190304:0:Tyes03491241208349---
FPHI484022:1:Tyes0--1330-1731--
FRANT:0:Tno176--561-0--
FSP106370:0:Tyes7210-720----
FSP1855:0:Tyes0844-1----
FSUC59374:0:Tyes02170-19282170---
FTUL351581:0:Tno613--0-128--
FTUL393011:0:Tno529--0-104--
FTUL393115:0:Tyes176--559-0--
FTUL401614:0:Tyes0-362483-362--
FTUL418136:0:Tno398--118-0--
FTUL458234:0:Tno543--0-112--
GBET391165:0:Tyes01732090173209208207
GFOR411154:0:Tyes--1087-01087--
GKAU235909:1:Tyes20-021-0935-
GMET269799:1:Tyes113525070135250725082509
GOXY290633:5:Tyes11921819-119218191-0
GSUL243231:0:Tyes3207085632060856855854
GTHE420246:1:Tyes8--9-0750-
GURA351605:0:Tyes3924069439250694695696
GVIO251221:0:Tyes176814130253514130--
HACI382638:1:Tyes-0-940---
HARS204773:0:Tyes1563356-156235606501
HAUR316274:2:Tyes-17380-173802811-
HCHE349521:0:Tyes803404047998044040479904800
HDUC233412:0:Tyes761-1140760-0-1
HHAL349124:0:Tyes213434-212434-0785
HHEP235279:0:Tyes-1070780107---
HINF281310:0:Tyes1-3250-325-326
HINF374930:0:Tyes1236-01237-919-918
HINF71421:0:Tno393-0392-698-699
HMAR272569:8:Tyes-0--0---
HMOD498761:0:Tyes667170462666717046260-
HMUK485914:1:Tyes-0--0---
HNEP81032:0:Tyes25-2510-
HPY:0:Tno-0-690---
HPYL357544:1:Tyes-518-0518---
HPYL85963:0:Tno-477-0477---
HSAL478009:4:Tyes-0--0---
HSOM205914:1:Tyes931-727933-1-0
HSOM228400:0:Tno177-0175-1296-1297
HSP64091:2:Tno-0--0---
HWAL362976:1:Tyes-0--0---
ILOI283942:0:Tyes90158880158817381589
JSP290400:1:Tyes20320345
JSP375286:0:Tyes1125310-1126137707861
KPNE272620:2:Tyes17581676119917570231828182319
KRAD266940:2:Fyes1--0----
LACI272621:0:Tyes--0--0--
LBIF355278:2:Tyes-170326301703---
LBIF456481:2:Tno-175227801752---
LBOR355276:1:Tyes25251128024841128---
LBOR355277:1:Tno247105602851056---
LBRE387344:2:Tyes----6620--
LCAS321967:1:Tyes170-1567-01567--
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