CANDIDATE ID: 242

CANDIDATE ID: 242

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9925282e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7511 (ygfZ) (b2898)
   Products of gene:
     - G7511-MONOMER (folate-binding protein)

- G7510 (ygfY) (b2897)
   Products of gene:
     - G7510-MONOMER (conserved protein)

- G7348 (rseB) (b2571)
   Products of gene:
     - G7348-MONOMER (rseB)
     - CPLX0-7648 (anti-sigma factor)

- EG12341 (rseA) (b2572)
   Products of gene:
     - EG12341-MONOMER (anti-sigma factor)

- EG11897 (rpoE) (b2573)
   Products of gene:
     - RPOE-MONOMER (RNA polymerase, sigma 24 (sigma E) factor)
     - RNAPE-CPLX (RNA polymerase sigma 24)

- EG10631 (nadB) (b2574)
   Products of gene:
     - L-ASPARTATE-OXID-MONOMER (L-aspartate oxidase)
       Reactions:
        L-aspartate + fumarate  ->  alpha-iminosuccinate + succinate + H+
        L-aspartate + oxygen  ->  hydrogen peroxide + alpha-iminosuccinate + H+
         In pathways
         PWY0-781 (aspartate superpathway)
         PYRIDNUCSYN-PWY (NAD biosynthesis I (from aspartate))

- EG10530 (lepB) (b2568)
   Products of gene:
     - EG10530-MONOMER (leader peptidase (signal peptidase I))
       Reactions:
        a peptide with a leader sequence  ->  a peptide + a leader sequence

- EG10270 (era) (b2566)
   Products of gene:
     - EG10270-MONOMER (GTP-binding protein)



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 125
Effective number of orgs (counting one per cluster within 468 clusters): 78

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VFIS312309 ncbi Vibrio fischeri ES1148
VCHO345073 ncbi Vibrio cholerae O3958
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169618
TTUR377629 ncbi Teredinibacter turnerae T79017
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252597
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
SSP94122 ncbi Shewanella sp. ANA-38
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB38
SPRO399741 ncbi Serratia proteamaculans 5688
SPEA398579 ncbi Shewanella pealeana ATCC 7003458
SONE211586 ncbi Shewanella oneidensis MR-18
SLOI323850 ncbi Shewanella loihica PV-48
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB48
SGLO343509 ncbi Sodalis glossinidius morsitans8
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1978
SDEN318161 ncbi Shewanella denitrificans OS2178
SDEG203122 ncbi Saccharophagus degradans 2-408
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1858
SBAL399599 ncbi Shewanella baltica OS1958
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RMET266264 ncbi Ralstonia metallidurans CH347
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1347
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30008
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a8
PSTU379731 ncbi Pseudomonas stutzeri A15017
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS98
PMUL272843 ncbi Pasteurella multocida multocida Pm708
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO18
PING357804 ncbi Psychromonas ingrahamii 378
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1258
PFLU220664 ncbi Pseudomonas fluorescens Pf-58
PFLU216595 ncbi Pseudomonas fluorescens SBW258
PFLU205922 ncbi Pseudomonas fluorescens Pf0-18
PENT384676 ncbi Pseudomonas entomophila L487
PATL342610 ncbi Pseudoalteromonas atlantica T6c8
PAER208964 ncbi Pseudomonas aeruginosa PAO18
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA148
NOCE323261 ncbi Nitrosococcus oceani ATCC 197078
NMUL323848 ncbi Nitrosospira multiformis ATCC 251967
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E7
MSP400668 ncbi Marinomonas sp. MWYL17
MFLA265072 ncbi Methylobacillus flagellatus KT7
MCAP243233 ncbi Methylococcus capsulatus Bath7
MAQU351348 ncbi Marinobacter aquaeolei VT87
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
JSP375286 ncbi Janthinobacterium sp. Marseille7
ILOI283942 ncbi Idiomarina loihiensis L2TR8
HSOM228400 ncbi Haemophilus somnus 23367
HSOM205914 ncbi Haemophilus somnus 129PT7
HINF71421 ncbi Haemophilus influenzae Rd KW207
HINF281310 ncbi Haemophilus influenzae 86-028NP7
HHAL349124 ncbi Halorhodospira halophila SL17
HCHE349521 ncbi Hahella chejuensis KCTC 23968
HARS204773 ncbi Herminiimonas arsenicoxydans7
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CPSY167879 ncbi Colwellia psychrerythraea 34H8
CJAP155077 Cellvibrio japonicus8
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHA271848 ncbi Burkholderia thailandensis E2647
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
ASP76114 ncbi Aromatoleum aromaticum EbN18
ASP62928 ncbi Azoarcus sp. BH728
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4498
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL037
APLE416269 ncbi Actinobacillus pleuropneumoniae L207
AHYD196024 Aeromonas hydrophila dhakensis8
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ABOR393595 ncbi Alcanivorax borkumensis SK27


Names of the homologs of the genes in the group in each of these orgs
  G7511   G7510   G7348   EG12341   EG11897   EG10631   EG10530   EG10270   
YPSE349747 YPSIP31758_0872YPSIP31758_0873YPSIP31758_1131YPSIP31758_1130YPSIP31758_1129YPSIP31758_1128YPSIP31758_1135YPSIP31758_1137
YPSE273123 YPTB3174YPTB3173YPTB2895YPTB2896YPTB2897YPTB2898YPTB2891YPTB2889
YPES386656 YPDSF_0617YPDSF_0618YPDSF_1558YPDSF_1559YPDSF_1560YPDSF_1561YPDSF_1554YPDSF_1552
YPES377628 YPN_3098YPN_3097YPN_1201YPN_1200YPN_1199YPN_1198YPN_1205YPN_1207
YPES360102 YPA_0370YPA_0371YPA_2447YPA_2446YPA_2445YPA_2444YPA_2451YPA_2453
YPES349746 YPANGOLA_A3840YPANGOLA_A3841YPANGOLA_A3606YPANGOLA_A3605YPANGOLA_A3604YPANGOLA_A3603YPANGOLA_A3610YPANGOLA_A3612
YPES214092 YPO0898YPO0897YPO2713YPO2712YPO2711YPO2710YPO2717YPO2719
YPES187410 Y3283Y3282Y1292Y1291Y1290Y1289Y1296Y1298
YENT393305 YE3387YE3386YE1012YE1011YE1010YE1009YE1016YE1018
VVUL216895 VV1_1556VV1_1557VV1_1561VV1_1560VV1_1559VV1_1558VV1_1564VV1_1566
VVUL196600 VV2842VV2841VV2836VV2837VV2838VV2839VV2832VV2830
VPAR223926 VP2583VP2582VP2576VP2577VP2578VP2580VP2573VP2571
VFIS312309 VF2097VF2096VF2091VF2092VF2093VF2094VF2088VF2086
VCHO345073 VC0395_A2049VC0395_A2048VC0395_A2043VC0395_A2044VC0395_A2045VC0395_A2046VC0395_A2040VC0395_A2038
VCHO VC2472VC2471VC2465VC2466VC2467VC2469VC2462VC2460
TTUR377629 TERTU_1176TERTU_1177TERTU_1182TERTU_1180TERTU_1178TERTU_1186TERTU_1189
TDEN292415 TBD_2098TBD_1186TBD_2093TBD_2095TBD_2096TBD_2088TBD_2085
STYP99287 STM3048STM3047STM2638STM2639STM2640STM2641STM2582STM2580
SSP94122 SHEWANA3_3417SHEWANA3_3035SHEWANA3_3030SHEWANA3_3031SHEWANA3_3032SHEWANA3_3033SHEWANA3_3027SHEWANA3_3025
SSON300269 SSO_3051SSO_3050SSO_2695SSO_2696SSO_2697SSO_2692SSO_2690
SSED425104 SSED_3948SSED_1139SSED_1144SSED_1143SSED_1142SSED_1141SSED_1147SSED_1149
SPRO399741 SPRO_3899SPRO_3898SPRO_3674SPRO_3675SPRO_3676SPRO_3677SPRO_3670SPRO_3668
SPEA398579 SPEA_0630SPEA_1028SPEA_1033SPEA_1032SPEA_1031SPEA_1030SPEA_1036SPEA_1038
SONE211586 SO_0861SO_1339SO_1344SO_1343SO_1342SO_1341SO_1347SO_1349
SLOI323850 SHEW_3198SHEW_1045SHEW_1050SHEW_1049SHEW_1048SHEW_1047SHEW_1053SHEW_1055
SHIGELLA YGFZYGFYRSEBRSEARPOELEPBERA
SHAL458817 SHAL_0722SHAL_1074SHAL_1079SHAL_1078SHAL_1077SHAL_1076SHAL_1082SHAL_1084
SGLO343509 SG1997SG1996SG1791SG1792SG1793SG1794SG1788SG1786
SFLE373384 SFV_2946SFV_2945SFV_2634SFV_2635SFV_2636SFV_2631SFV_2629
SFLE198214 AAN44369.1AAN44368.1AAN44130.1AAN44131.1AAN44132.1AAN44127.1AAN44125.1
SENT454169 SEHA_C3280SEHA_C3279SEHA_C2852SEHA_C2853SEHA_C2854SEHA_C2856SEHA_C2849SEHA_C2846
SENT321314 SCH_2989SCH_2987SCH_2643SCH_2644SCH_2645SCH_2646SCH_2577SCH_2575
SENT295319 SPA2916SPA2915SPA0280SPA0279SPA0278SPA0277SPA0283SPA0285
SENT220341 STY3204STY3203STY2831STY2832STY2833STY2834STY2828STY2826
SENT209261 T2966T2965T0272T0271T0270T0269T0275T0276
SDYS300267 SDY_3184SDY_3185SDY_2812SDY_2813SDY_2814SDY_2815SDY_2809SDY_2807
SDEN318161 SDEN_2956SDEN_2775SDEN_2770SDEN_2771SDEN_2772SDEN_2773SDEN_2767SDEN_2765
SDEG203122 SDE_2255SDE_2254SDE_2249SDE_2250SDE_2251SDE_2252SDE_2245SDE_2242
SBOY300268 SBO_3094SBO_3095SBO_2599SBO_2600SBO_2601SBO_2596SBO_2594
SBAL402882 SHEW185_0837SHEW185_1236SHEW185_1241SHEW185_1240SHEW185_1239SHEW185_1238SHEW185_1244SHEW185_1246
SBAL399599 SBAL195_0872SBAL195_1269SBAL195_1274SBAL195_1273SBAL195_1272SBAL195_1271SBAL195_1277SBAL195_1279
RSOL267608 RSC1782RSC1992RSC1057RSC1055RSC2447RSC1061RSC1064
RMET266264 RMET_1830RMET_2482RMET_2423RMET_2425RMET_2872RMET_2420RMET_2417
REUT381666 H16_A1567H16_A2628H16_A2561H16_A2563H16_A3036H16_A2557H16_A2554
REUT264198 REUT_A1432REUT_A2321REUT_A2257REUT_A2259REUT_A2735REUT_A2254REUT_A2251
PSYR223283 PSPTO_4228PSPTO_4227PSPTO_4222PSPTO_4223PSPTO_4224PSPTO_4225PSPTO_4219PSPTO_4216
PSYR205918 PSYR_3962PSYR_3961PSYR_3956PSYR_3957PSYR_3958PSYR_3959PSYR_3953PSYR_3950
PSTU379731 PST_1219PST_1220PST_1225PST_1223PST_1222PST_1229PST_1232
PPUT76869 PPUTGB1_4388PPUTGB1_4387PPUTGB1_4378PPUTGB1_4380PPUTGB1_4381PPUTGB1_4375PPUTGB1_4373
PPUT351746 PPUT_4298PPUT_4297PPUT_4292PPUT_4294PPUT_4295PPUT_4289PPUT_4287
PPUT160488 PP_1423PP_1424PP_1429PP_1427PP_1426PP_1432PP_1434
PPRO298386 PBPRA3100PBPRA3099PBPRA3093PBPRA3094PBPRA3095PBPRA3097PBPRA3090PBPRA3088
PMUL272843 PM1874PM1790PM1787PM1788PM1789PM0201PM0062PM0060
PMEN399739 PMEN_1463PMEN_1464PMEN_1469PMEN_1467PMEN_1466PMEN_1473PMEN_1476
PLUM243265 PLU3556PLU3555PLU3344PLU3345PLU3346PLU3347PLU3341PLU3339
PING357804 PING_0062PING_0063PING_0067PING_0066PING_0065PING_0064PING_0639PING_0641
PHAL326442 PSHAA0722PSHAA0723PSHAA0728PSHAA0727PSHAA0726PSHAA0725PSHAA0731PSHAA0733
PFLU220664 PFL_1444PFL_1445PFL_1450PFL_1449PFL_1448PFL_1447PFL_1070PFL_1072
PFLU216595 PFLU1454PFLU1455PFLU1469PFLU1468PFLU1467PFLU1465PFLU1059PFLU1061
PFLU205922 PFL_1357PFL_1358PFL_1364PFL_1363PFL_1362PFL_1360PFL_0993PFL_0995
PENT384676 PSEEN4300PSEEN4299PSEEN4294PSEEN4296PSEEN4297PSEEN4291PSEEN4289
PATL342610 PATL_3160PATL_3159PATL_3153PATL_3154PATL_3155PATL_3156PATL_3150PATL_3148
PAER208964 PA0759PA0760PA0764PA0763PA0762PA0761PA0768PA0771
PAER208963 PA14_54480PA14_54470PA14_54410PA14_54420PA14_54430PA14_54450PA14_54350PA14_54320
NOCE323261 NOC_2474NOC_2469NOC_2464NOC_2465NOC_2466NOC_2467NOC_2460NOC_2457
NMUL323848 NMUL_A1737NMUL_A0859NMUL_A1748NMUL_A1746NMUL_A1743NMUL_A1752NMUL_A1754
MSUC221988 MS0254MS2227MS2230MS2229MS2228MS0370MS0367
MSP400668 MMWYL1_1085MMWYL1_1095MMWYL1_1100MMWYL1_1098MMWYL1_1097MMWYL1_1245MMWYL1_1247
MFLA265072 MFLA_1904MFLA_1002MFLA_1001MFLA_1000MFLA_0999MFLA_1005MFLA_1008
MCAP243233 MCA_0240MCA_1541MCA_1469MCA_1471MCA_1472MCA_1465MCA_1462
MAQU351348 MAQU_2267MAQU_2265MAQU_2261MAQU_2263MAQU_2264MAQU_2247MAQU_2244
KPNE272620 GKPORF_B2682GKPORF_B2681GKPORF_B2227GKPORF_B2228GKPORF_B2229GKPORF_B2232GKPORF_B2224GKPORF_B2222
JSP375286 MMA_1988MMA_1510MMA_1364MMA_1362MMA_1997MMA_1368MMA_1371
ILOI283942 IL0820IL0819IL0814IL0815IL0816IL0817IL0811IL0809
HSOM228400 HSM_0324HSM_0407HSM_0404HSM_0405HSM_0406HSM_0837HSM_0839
HSOM205914 HS_1294HS_1604HS_1607HS_1606HS_1605HS_1241HS_1239
HINF71421 HI_0466HI_0627HI_0630HI_0629HI_0628HI_0015HI_0013
HINF281310 NTHI0597NTHI0720NTHI0716NTHI0718NTHI0719NTHI0020NTHI0018
HHAL349124 HHAL_0047HHAL_0042HHAL_0038HHAL_0040HHAL_0041HHAL_0035HHAL_0033
HCHE349521 HCH_01786HCH_01788HCH_01792HCH_01791HCH_01790HCH_01789HCH_01798HCH_01801
HARS204773 HEAR1394HEAR1774HEAR2069HEAR2071HEAR1385HEAR2065HEAR2062
ESP42895 ENT638_3316ENT638_3315ENT638_3058ENT638_3059ENT638_3060ENT638_3061ENT638_3055ENT638_3053
EFER585054 EFER_2834EFER_2832EFER_0503EFER_0502EFER_0501EFER_0499EFER_0506EFER_0508
ECOO157 YGFZYGFYRSEBRSEARPOENADBLEPBERA
ECOL83334 ECS3770ECS3769ECS3437ECS3438ECS3439ECS3440ECS3434ECS3432
ECOL585397 ECED1_3357ECED1_3356ECED1_3001ECED1_3002ECED1_3003ECED1_3005ECED1_2998ECED1_2995
ECOL585057 ECIAI39_3314ECIAI39_3313ECIAI39_2776ECIAI39_2777ECIAI39_2778ECIAI39_2779ECIAI39_2773ECIAI39_2771
ECOL585056 ECUMN_3240ECUMN_3239ECUMN_2893ECUMN_2894ECUMN_2895ECUMN_2890ECUMN_2887
ECOL585055 EC55989_3184EC55989_3183EC55989_2860EC55989_2861EC55989_2862EC55989_2863EC55989_2857EC55989_2854
ECOL585035 ECS88_3178ECS88_3177ECS88_2745ECS88_2746ECS88_2747ECS88_2748ECS88_2742ECS88_2739
ECOL585034 ECIAI1_3017ECIAI1_3016ECIAI1_2684ECIAI1_2685ECIAI1_2686ECIAI1_2688ECIAI1_2680ECIAI1_2677
ECOL481805 ECOLC_0811ECOLC_0812ECOLC_1106ECOLC_1105ECOLC_1104ECOLC_1103ECOLC_1109ECOLC_1111
ECOL469008 ECBD_0839ECBD_0840ECBD_1110ECBD_1109ECBD_1108ECBD_1106ECBD_1113ECBD_1115
ECOL439855 ECSMS35_3031ECSMS35_3030ECSMS35_2724ECSMS35_2725ECSMS35_2726ECSMS35_2728ECSMS35_2721ECSMS35_2719
ECOL413997 ECB_02730ECB_02729ECB_02465ECB_02466ECB_02467ECB_02468ECB_02462ECB_02460
ECOL409438 ECSE_3161ECSE_3160ECSE_2859ECSE_2860ECSE_2861ECSE_2862ECSE_2856ECSE_2854
ECOL405955 APECO1_3629APECO1_3630APECO1_3960APECO1_3959APECO1_3958APECO1_3957APECO1_3963APECO1_3965
ECOL364106 UTI89_C3284UTI89_C3282UTI89_C2893UTI89_C2894UTI89_C2895UTI89_C2896UTI89_C2890UTI89_C2887
ECOL362663 ECP_2892ECP_2890ECP_2573ECP_2574ECP_2575ECP_2576ECP_2570ECP_2568
ECOL331111 ECE24377A_3225ECE24377A_3223ECE24377A_2857ECE24377A_2858ECE24377A_2859ECE24377A_2862ECE24377A_2854ECE24377A_2852
ECOL316407 ECK2893:JW2866:B2898ECK2892:JW2865:B2897ECK2569:JW2555:B2571ECK2570:JW2556:B2572ECK2571:JW2557:B2573ECK2572:JW2558:B2574ECK2566:JW2552:B2568ECK2564:JW2550:B2566
ECOL199310 C3479C3477C3095C3096C3097C3098C3092C3090
ECAR218491 ECA0758ECA0759ECA3282ECA3283ECA3284ECA3285ECA3279ECA3277
CVIO243365 CV_1362CV_2060CV_2059CV_2058CV_3930CV_2064CV_2067
CSAL290398 CSAL_1830CSAL_2151CSAL_1627CSAL_1626CSAL_1215CSAL_1630CSAL_1632
CPSY167879 CPS_4132CPS_4131CPS_4127CPS_4128CPS_4129CPS_4130CPS_4123CPS_4121
CJAP155077 CJA_2216CJA_2215CJA_2211CJA_2212CJA_2213CJA_2214CJA_2583CJA_2580
BVIE269482 BCEP1808_1819BCEP1808_4414BCEP1808_1048BCEP1808_1046BCEP1808_2582BCEP1808_1052BCEP1808_1054
BTHA271848 BTH_I2152BTH_II0664BTH_I1725BTH_I1723BTH_I0778BTH_I1729BTH_I1731
BPSE320373 BURPS668_2283BURPS668_A2468BURPS668_2784BURPS668_2786BURPS668_0976BURPS668_2780BURPS668_2778
BPSE320372 BURPS1710B_A2648BURPS1710B_B0932BURPS1710B_A3147BURPS1710B_A3149BURPS1710B_A1190BURPS1710B_A3142BURPS1710B_A3140
BPSE272560 BPSL1434BPSS1716BPSL2434BPSL2436BPSL0914BPSL2430BPSL2428
BMAL320389 BMA10247_1191BMA10247_A0503BMA10247_1794BMA10247_1796BMA10247_2103BMA10247_1790BMA10247_1788
BMAL320388 BMASAVP1_A1918BMASAVP1_1625BMASAVP1_A2471BMASAVP1_A2473BMASAVP1_A2649BMASAVP1_A2467BMASAVP1_A2465
BMAL243160 BMA_1427BMA_A1745BMA_0538BMA_0536BMA_2233BMA_0542BMA_0544
BAMB398577 BAMMC406_1804BAMMC406_3831BAMMC406_1009BAMMC406_1007BAMMC406_2422BAMMC406_1013BAMMC406_1015
BAMB339670 BAMB_1832BAMB_3315BAMB_1005BAMB_1003BAMB_2551BAMB_1009BAMB_1011
ASP76114 EBA5412EBA6688EBA5465EBA5464EBA5463EBA5461EBA5536EBA5540
ASP62928 AZO1593AZO1553AZO1632AZO1631AZO1630AZO1629AZO1640AZO1643
ASAL382245 ASA_3496ASA_3495ASA_3490ASA_3491ASA_3492ASA_3493ASA_3487ASA_3485
APLE434271 APJL_0057APJL_1547APJL_0416APJL_0415APJL_1556APJL_0535APJL_0537
APLE416269 APL_0057APL_1521APL_0395APL_0394APL_1529APL_0542APL_0544
AHYD196024 AHA_0790AHA_0791AHA_0796AHA_0795AHA_0794AHA_0793AHA_0799AHA_0801
AEHR187272 MLG_1330MLG_1336MLG_1341MLG_1339MLG_1338MLG_1345MLG_1348
ABOR393595 ABO_1644ABO_1643ABO_1637ABO_1639ABO_1641ABO_1633ABO_1630


Organism features enriched in list (features available for 121 out of the 125 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000435692
Arrangment:Pairs 0.008470332112
Disease:Bubonic_plague 0.000072366
Disease:Dysentery 0.000072366
Disease:Gastroenteritis 0.00001641013
Disease:Glanders_and_pneumonia 0.008764933
Disease:Melioidosis 0.008764933
Disease:Plant_rot 0.008764933
Endospores:No 0.000048126211
GC_Content_Range4:0-40 2.552e-196213
GC_Content_Range4:40-60 1.369e-1382224
GC_Content_Range7:30-40 6.389e-136166
GC_Content_Range7:40-50 0.002853635117
GC_Content_Range7:50-60 7.317e-1047107
Genome_Size_Range5:0-2 4.658e-162155
Genome_Size_Range5:2-4 1.380e-718197
Genome_Size_Range5:4-6 5.737e-1980184
Genome_Size_Range5:6-10 0.00007042147
Genome_Size_Range9:1-2 1.517e-122128
Genome_Size_Range9:2-3 0.000034610120
Genome_Size_Range9:3-4 0.0055611877
Genome_Size_Range9:4-5 5.301e-73996
Genome_Size_Range9:5-6 1.577e-94188
Genome_Size_Range9:6-8 5.220e-62038
Gram_Stain:Gram_Neg 8.377e-23113333
Habitat:Multiple 0.004657448178
Motility:No 1.965e-98151
Motility:Yes 2.973e-1289267
Oxygen_Req:Aerobic 0.006252028185
Oxygen_Req:Anaerobic 2.144e-83102
Oxygen_Req:Facultative 7.896e-1680201
Pathogenic_in:Human 0.009983154213
Pathogenic_in:No 0.000128230226
Shape:Coccus 3.240e-7282
Shape:Rod 1.279e-15108347
Shape:Spiral 0.0027069134
Temp._range:Mesophilic 0.0066681107473
Temp._range:Psychrophilic 0.003114269
Temp._range:Thermophilic 0.0021774135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 210
Effective number of orgs (counting one per cluster within 468 clusters): 160

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP64471 ncbi Synechococcus sp. CC93111
SSOL273057 ncbi Sulfolobus solfataricus P21
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis1
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RMAS416276 ncbi Rickettsia massiliae MTU51
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97901
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LACI272621 ncbi Lactobacillus acidophilus NCFM1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266951
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293281
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
EFAE226185 ncbi Enterococcus faecalis V5831
ECAN269484 ncbi Ehrlichia canis Jake1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1011
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6301
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BQUI283165 ncbi Bartonella quintana Toulouse1
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K11
ANAE240017 Actinomyces oris MG11
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G7511   G7510   G7348   EG12341   EG11897   EG10631   EG10530   EG10270   
WPIP955 WD_0893
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TROS309801 TRD_1752
TPEN368408
TPAL243276
TLET416591 TLET_0757
TKOD69014
TDEN243275 TDE_2320
TACI273075
STOK273063 ST1196
STHE322159 STER_0668
STHE299768 STR0619
STHE264199 STU0619
SSUI391296 SSU98_1410
SSUI391295 SSU05_1397
SSP64471 GSYN2692
SSOL273057 SSO0997
SSAP342451 SSP1189
SPYO370554 MGAS10750_SPY0389
SPYO370553 MGAS2096_SPY0410
SPYO370552 MGAS10270_SPY0391
SPYO370551 MGAS9429_SPY0390
SPYO319701 M28_SPY0376
SPYO293653 M5005_SPY0390
SPYO286636 M6_SPY0415
SPYO198466 SPYM3_0337
SPYO193567 SPS1520
SPYO186103 SPYM18_0517
SPYO160490 SPY0476
SPNE488221 SP70585_1009
SPNE487214 SPH_1070
SPNE487213 SPT_1234
SPNE171101 SPR0871
SPNE170187 SPN06148
SPNE1313 SPJ_0910
SMUT210007 SMU_1617
SMAR399550
SHAE279808
SGOR29390 SGO_0713
SEPI176280 SE_1254
SEPI176279 SERP1134
SAUR93062 SACOL1624
SAUR93061
SAUR426430 NWMN_1470
SAUR418127 SAHV_1554
SAUR367830 SAUSA300_1527
SAUR359787 SAURJH1_1659
SAUR359786 SAURJH9_1625
SAUR282459 SAS1505
SAUR282458 SAR1644
SAUR273036 SAB1439C
SAUR196620 MW1519
SAUR158879 SA1396
SAUR158878 SAV1567
SAGA211110 GBS1560
SAGA208435 SAG_1499
SAGA205921 SAK_1525
SACI330779 SACI_0549
RTYP257363 RT0020
RSAL288705 RSAL33209_1384
RRIC452659 RRIOWA_0196
RRIC392021 A1G_00900
RMAS416276 RMA_0163
RFEL315456 RF_1177
RCON272944 RC0156
RAKA293614 A1C_00865
PTOR263820 PTO0995
PPEN278197 PEPE_1104
PMAR74547 PMT0177
PMAR59920 PMN2A_1468
PMAR167555 NATL1_01711
PMAR167546 P9301ORF_0119
PMAR167542 P9515ORF_0116
PMAR167540 PMM0100
PMAR167539 PRO_0119
PMAR146891 A9601_01161
PISL384616
PHOR70601
PFUR186497
PAST100379 PAM625
PARS340102
PAER178306
PABY272844
NSEN222891 NSE_0784
NPHA348780 NP2416A
MTHE349307
MTHE187420 MTH1502
MSYN262723
MSTA339860 MSP_0180
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632 MSC_0462
MMOB267748
MMAZ192952
MMAR444158 MMARC6_1397
MMAR426368 MMARC7_0522
MMAR402880 MMARC5_0315
MMAR394221 MMAR10_0812
MMAR368407 MEMAR_0221
MMAR267377 MMP1277
MLEP272631 ML1226
MLAB410358 MLAB_0140
MKAN190192 MK0828
MJAN243232 MJ_0033
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_3053
MGEN243273
MFLO265311 MFL266
MCAP340047 MCAP_0507
MBUR259564
MBAR269797
MART243272 MART0536
MAEO419665
MACE188937
LXYL281090 LXX19190
LSAK314315 LSA0878
LREU557436 LREU_0738
LPLA220668 LP_1967
LMON169963 LMO1462
LMES203120 LEUM_0780
LLAC272623 L0155
LLAC272622 LACR_0397
LJOH257314 LJ_1322
LINN272626 LIN1499
LHEL405566 LHV_1301
LGAS324831 LGAS_1118
LDEL390333 LDB1251
LDEL321956 LBUL_1169
LCAS321967 LSEI_1515
LBRE387344 LVIS_0751
LACI272621 LBA1201
IHOS453591 IGNI_0276
HWAL362976 HQ3217A
HSP64091 VNG1883G
HSAL478009 OE3646F
HPYL85963
HPYL357544
HPY HP0576
HMAR272569 RRNAC3409
HBUT415426
HACI382638 HAC_1436
FNUC190304
FMAG334413 FMG_0736
ERUM302409 ERGA_CDS_03800
ERUM254945 ERWE_CDS_03840
EFAE226185 EF_2410
ECAN269484 ECAJ_0362
DSP255470 CBDBA1338
DSP216389 DEHABAV1_1193
DETH243164
CTRA471473
CTRA471472
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380 CPR_1987
CMUR243161
CMIC443906 CMM_1319
CMIC31964 CMS2075
CMET456442
CMAQ397948 CMAQ_1793
CKOR374847
CJEJ407148 C8J_0803
CJEJ360109 JJD26997_1005
CJEJ354242 CJJ81176_0872
CJEJ195099 CJE_0943
CJEJ192222 CJ0856
CJEI306537 JK1623
CHOM360107 CHAB381_1037
CGLU196627
CFET360106 CFF8240_1173
CFEL264202
CEFF196164
CDIP257309 DIP0709
CDIF272563 CD2437
CCUR360105 CCV52592_0800
CCON360104 CCC13826_0831
CCAV227941
CBOT508765 CLL_A0906
CBOT498213 CLD_1600
CBOT441772 CLI_2998
CABO218497
BXEN266265
BTUR314724
BQUI283165 BQ04270
BLON206672 BL1375
BHER314723
BGAR290434
BBUR224326
BAFZ390236 BAPKO_0704
AYEL322098 AYWB_110
AURANTIMONAS
APER272557 APE0950
ANAE240017 ANA_2695
AMAR234826 AM708
ALAI441768 ACL_0948
AFUL224325


Organism features enriched in list (features available for 200 out of the 210 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 8.685e-65092
Arrangment:Clusters 4.639e-61517
Disease:Pharyngitis 0.000174788
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 6.436e-61111
Disease:Wide_range_of_infections 6.436e-61111
Disease:bronchitis_and_pneumonitis 0.000174788
Endospores:No 8.084e-24128211
Endospores:Yes 0.0000120553
GC_Content_Range4:0-40 5.272e-24129213
GC_Content_Range4:40-60 0.000059156224
GC_Content_Range4:60-100 5.742e-1415145
GC_Content_Range7:0-30 0.00001183047
GC_Content_Range7:30-40 9.664e-1699166
GC_Content_Range7:50-60 2.021e-617107
GC_Content_Range7:60-70 1.791e-1313134
Genome_Size_Range5:0-2 1.024e-36118155
Genome_Size_Range5:4-6 2.325e-317184
Genome_Size_Range5:6-10 2.620e-8147
Genome_Size_Range9:0-1 2.484e-62127
Genome_Size_Range9:1-2 4.707e-2897128
Genome_Size_Range9:2-3 0.000066459120
Genome_Size_Range9:3-4 0.00110571577
Genome_Size_Range9:4-5 2.399e-12696
Genome_Size_Range9:5-6 1.018e-16188
Gram_Stain:Gram_Neg 1.901e-2062333
Gram_Stain:Gram_Pos 2.733e-777150
Habitat:Host-associated 4.433e-695206
Habitat:Multiple 0.003440548178
Habitat:Terrestrial 0.0000250131
Motility:No 5.566e-1185151
Motility:Yes 4.354e-959267
Optimal_temp.:- 0.000016265257
Optimal_temp.:30-35 0.007204867
Optimal_temp.:30-37 1.706e-61618
Optimal_temp.:37 0.003041848106
Oxygen_Req:Aerobic 2.380e-933185
Oxygen_Req:Anaerobic 0.001193848102
Pathogenic_in:Animal 0.00600691466
Pathogenic_in:Human 0.000391491213
Pathogenic_in:Swine 0.004596255
Shape:Coccus 9.884e-166182
Shape:Irregular_coccus 7.937e-91717
Shape:Rod 5.814e-2660347
Shape:Sphere 7.285e-61619
Shape:Spiral 0.00422291934
Temp._range:Hyperthermophilic 0.00001231823



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120890.6598
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181220.6577
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761000.5759
GLYCOCAT-PWY (glycogen degradation I)2461190.5710
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951050.5694
GALACTITOLCAT-PWY (galactitol degradation)73600.5652
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81620.5452
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911000.5362
PWY-5148 (acyl-CoA hydrolysis)2271060.5035
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50440.5011
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251050.4994
GLUCONSUPER-PWY (D-gluconate degradation)2291050.4909
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001210.4878
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491090.4831
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491090.4831
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901180.4806
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911180.4789
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961190.4784
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91600.4737
PWY-5918 (heme biosynthesis I)2721130.4722
GLUCARDEG-PWY (D-glucarate degradation I)152810.4713
PWY-5913 (TCA cycle variation IV)3011180.4620
PWY-1269 (CMP-KDO biosynthesis I)3251220.4557
PWY-5386 (methylglyoxal degradation I)3051180.4554
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861140.4554
PWY-4041 (γ-glutamyl cycle)2791110.4435
PWY-6196 (serine racemization)102610.4391
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391210.4264
GLUTDEG-PWY (glutamate degradation II)194880.4248
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149750.4238
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481220.4211
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4176
PWY0-981 (taurine degradation IV)106600.4131
PWY-46 (putrescine biosynthesis III)138700.4084
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96560.4078
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135690.4077
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183830.4073
PWY0-901 (selenocysteine biosynthesis I (bacteria))230950.4057
PWY0-1182 (trehalose degradation II (trehalase))70460.4056
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94550.4047
LIPASYN-PWY (phospholipases)212900.4015



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7510   G7348   EG12341   EG11897   EG10631   EG10530   EG10270   
G75110.9995270.9988140.9985550.9989360.9991390.9985310.998515
G75100.9992970.9991060.9993620.999290.9987930.998823
G73480.9996250.9997730.9994830.9996560.999602
EG123410.9996520.999450.9993360.999273
EG118970.9994740.9995540.99952
EG106310.9990440.999062
EG105300.999887
EG10270



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PAIRWISE BLAST SCORES:

  G7511   G7510   G7348   EG12341   EG11897   EG10631   EG10530   EG10270   
G75110.0f0-------
G7510-0.0f0------
G7348--0.0f0-----
EG12341---0.0f0----
EG11897----0.0f0---
EG10631-----0.0f0--
EG10530------0.0f0-
EG10270-------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10270 EG10530 EG10631 EG11897 EG12341 G7348 (centered at EG12341)
G7510 G7511 (centered at G7511)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7511   G7510   G7348   EG12341   EG11897   EG10631   EG10530   EG10270   
247/623162/623140/623101/623287/623364/623368/623406/623
AAEO224324:0:Tyes------0741
AAUR290340:2:Tyes----1060--
AAVE397945:0:Tyes2190-2-0260458
ABAC204669:0:Tyes379---444016141292
ABAU360910:0:Tyes637-2-0-57
ABOR393595:0:Tyes14137-91130
ABUT367737:0:Tyes-----2860-
ACAU438753:0:Tyes0831--2053-16251627
ACEL351607:0:Tyes----19310--
ACRY349163:8:Tyes-----129102
ADEH290397:0:Tyes1244---26781968038
AEHR187272:0:Tyes0611-981518
AFER243159:0:Tyes10---7830
AHYD196024:0:Tyes016543911
ALAI441768:0:Tyes-------0
AMAR234826:0:Tyes------0-
AMAR329726:9:Tyes----03641303-
AMET293826:0:Tyes----30490-2948
ANAE240017:0:Tyes----0---
AORE350688:0:Tyes----0--49
APER272557:0:Tyes-----0--
APHA212042:0:Tyes1040----0605-
APLE416269:0:Tyes01492-3453441500491493
APLE434271:0:Tno01488-3543531497460462
ASAL382245:5:Tyes1110567820
ASP1667:3:Tyes----930--
ASP232721:2:Tyes0-1509-1511172215061503
ASP62928:0:Tyes400818079788992
ASP62977:0:Tyes-559---730
ASP76114:2:Tyes0757403938377982
AVAR240292:3:Tyes----431402993896
AYEL322098:4:Tyes-------0
BABO262698:1:Tno7-----03
BAFZ390236:2:Fyes-------0
BAMB339670:2:Tno-0------
BAMB339670:3:Tno846-2-0159068
BAMB398577:2:Tno-0------
BAMB398577:3:Tno804-2-0143968
BAMY326423:0:Tyes----02264-2131
BANT260799:0:Tno-----127-0
BANT261594:2:Tno-----130-0
BANT568206:2:Tyes-----134-0
BANT592021:2:Tno-----135-0
BAPH198804:0:Tyes167-----20
BAPH372461:0:Tyes103-----0-
BBAC264462:0:Tyes----0221399-
BBAC360095:0:Tyes6-----0-
BBRO257310:0:Tyes0-1125-1127-11221120
BCAN483179:1:Tno7-----03
BCEN331271:0:Tno0-------
BCEN331271:2:Tno--2-0126368
BCEN331272:3:Tyes767-2-0137568
BCER226900:1:Tyes-----321703091
BCER288681:0:Tno-----128-0
BCER315749:1:Tyes-----6410526
BCER405917:1:Tyes-----133-0
BCER572264:1:Tno-----131-0
BCIC186490:0:Tyes0----424114112
BCLA66692:0:Tyes----01329-1463
BFRA272559:1:Tyes----341401253786
BFRA295405:0:Tno----375701604124
BHAL272558:0:Tyes----0--1144
BHEN283166:0:Tyes7-----0-
BJAP224911:0:Fyes13---16025342532
BLIC279010:0:Tyes----02635-2444
BLON206672:0:Tyes-----0--
BMAL243160:0:Tno-0------
BMAL243160:1:Tno778-2-0148768
BMAL320388:0:Tno-0------
BMAL320388:1:Tno0-535-537707531529
BMAL320389:0:Tyes-0------
BMAL320389:1:Tyes0-586-588884582580
BMEL224914:1:Tno0-----64
BMEL359391:1:Tno7-----03
BOVI236:1:Tyes7-----03
BPAR257311:0:Tno0-1649-1651-16461644
BPER257313:0:Tyes0-532-534-529527
BPET94624:0:Tyes747-2-0315457
BPSE272560:0:Tyes-0------
BPSE272560:1:Tyes532-1526-1528015221520
BPSE320372:0:Tno-0------
BPSE320372:1:Tno1421-1845-1847018401838
BPSE320373:0:Tno-0------
BPSE320373:1:Tno1267-1738-1740017341733
BPUM315750:0:Tyes----0227712032117
BQUI283165:0:Tyes------0-
BSP107806:2:Tyes175-----20
BSP36773:2:Tyes968-2-0162968
BSP376:0:Tyes0----236823062304
BSUB:0:Tyes----02750-2486
BSUI204722:1:Tyes7-----03
BSUI470137:1:Tno6-----0-
BTHA271848:0:Tno-0------
BTHA271848:1:Tno1342-928-9260932934
BTHE226186:0:Tyes----14810136661
BTHU281309:1:Tno-----126-0
BTHU412694:1:Tno-----117-0
BTRI382640:1:Tyes7-----02
BVIE269482:6:Tyes-0------
BVIE269482:7:Tyes766-2-0152068
BWEI315730:4:Tyes----0254019372417
CACE272562:1:Tyes----1983-4600
CAULO:0:Tyes0----25701195-
CBEI290402:0:Tyes------30110
CBLO203907:0:Tyes0-----278-
CBLO291272:0:Tno0-----290-
CBOT36826:1:Tno------0504
CBOT441770:0:Tyes------0587
CBOT441771:0:Tno------0537
CBOT441772:1:Tno-------0
CBOT498213:1:Tno-------0
CBOT508765:1:Tyes-------0
CBOT515621:2:Tyes------0525
CBOT536232:0:Tno------0582
CBUR227377:1:Tyes317740---013401338
CBUR360115:1:Tno326832---014001398
CBUR434922:2:Tno1110428---145202
CCHL340177:0:Tyes----14016680-
CCON360104:2:Tyes------0-
CCUR360105:0:Tyes------0-
CDES477974:0:Tyes----196805161891
CDIF272563:1:Tyes-------0
CDIP257309:0:Tyes----0---
CFET360106:0:Tyes------0-
CHOM360107:1:Tyes------0-
CHUT269798:0:Tyes----0-13491846
CHYD246194:0:Tyes-----18839060
CJAP155077:0:Tyes540123371368
CJEI306537:0:Tyes----0---
CJEJ192222:0:Tyes------0-
CJEJ195099:0:Tno------0-
CJEJ354242:2:Tyes------0-
CJEJ360109:0:Tyes------0-
CJEJ407148:0:Tno------0-
CKLU431943:1:Tyes-----0647165
CMAQ397948:0:Tyes-----0--
CMIC31964:2:Tyes----0---
CMIC443906:2:Tyes----0---
CNOV386415:0:Tyes------01130
CPEL335992:0:Tyes0-----429-
CPER195102:1:Tyes------01426
CPER195103:0:Tno------01666
CPER289380:3:Tyes-------0
CPHY357809:0:Tyes------22090
CPSY167879:0:Tyes1110678920
CRUT413404:0:Tyes-----32490
CSAL290398:0:Tyes630963-4254240428430
CSP501479:6:Fyes-----0168172
CSP78:2:Tyes----57826010-
CTEP194439:0:Tyes----850875-
CTET212717:0:Tyes------0702
CVES412965:0:Tyes0----530248240
CVIO243365:0:Tyes0-7117107092627715718
DARO159087:0:Tyes176838--1069
DDES207559:0:Tyes-----010021794
DGEO319795:1:Tyes962---11040--
DHAF138119:0:Tyes----4257024202938
DNOD246195:0:Tyes-0----169167
DOLE96561:0:Tyes-----9880613
DPSY177439:2:Tyes-----61601628
DRAD243230:3:Tyes0------286
DRED349161:0:Tyes----21400-2338
DSHI398580:5:Tyes1928-----02
DSP216389:0:Tyes-----0--
DSP255470:0:Tno-----0--
DVUL882:1:Tyes-----17506480
ECAN269484:0:Tyes------0-
ECAR218491:0:Tyes01254025412542254325372535
ECHA205920:0:Tyes-----0359-
ECOL199310:0:Tno383381567820
ECOL316407:0:Tno322321567820
ECOL331111:6:Tno351349567920
ECOL362663:0:Tno329327567820
ECOL364106:1:Tno394392678930
ECOL405955:2:Tyes353352567820
ECOL409438:6:Tyes320319567820
ECOL413997:0:Tno282281567820
ECOL439855:4:Tno296295567820
ECOL469008:0:Tno01282281280278285287
ECOL481805:0:Tno01306305304303309311
ECOL585034:0:Tno3203197891030
ECOL585035:0:Tno425424567820
ECOL585055:0:Tno321320567820
ECOL585056:2:Tno356355567-20
ECOL585057:0:Tno568567678930
ECOL585397:0:Tno362361567820
ECOL83334:0:Tno354353567820
ECOLI:0:Tno331330567820
ECOO157:0:Tno360359678930
EFAE226185:3:Tyes-------0
EFER585054:1:Tyes23242322321068
ELIT314225:0:Tyes-----138520
ERUM254945:0:Tyes------0-
ERUM302409:0:Tno------0-
ESP42895:1:Tyes272271567820
FALN326424:0:Tyes----0650--
FJOH376686:0:Tyes----935387601696
FMAG334413:1:Tyes-------0
FNOD381764:0:Tyes----50--0
FPHI484022:1:Tyes17171946---188812320
FRANT:0:Tno051---36144263
FSP106370:0:Tyes----0619--
FSP1855:0:Tyes----7620--
FSUC59374:0:Tyes-----02060-
FTUL351581:0:Tno481216---7170205
FTUL393011:0:Tno435207---6510194
FTUL393115:0:Tyes051---34742663
FTUL401614:0:Tyes91434---0763447
FTUL418136:0:Tno863705---2430717
FTUL458234:0:Tno452218---6650206
GBET391165:0:Tyes995-----0-
GFOR411154:0:Tyes----0--2463
GKAU235909:1:Tyes----0251310952400
GMET269799:1:Tyes-----1960555
GOXY290633:5:Tyes213-----02
GSUL243231:0:Tyes-----5570955
GTHE420246:1:Tyes----0234217912236
GURA351605:0:Tyes----0238524023037
GVIO251221:0:Tyes636---277501190-
HACI382638:1:Tyes------0-
HARS204773:0:Tyes9365638-6400634631
HAUR316274:2:Tyes----01932--
HCHE349521:0:Tyes0265431013
HDUC233412:0:Tyes2060-980979-13421340
HHAL349124:0:Tyes1495-7820
HHEP235279:0:Tyes-----01387-
HINF281310:0:Tyes530650647648649-20
HINF374930:0:Tyes01482147914801481-449-
HINF71421:0:Tno436595598597596-20
HMAR272569:8:Tyes-----0--
HMOD498761:0:Tyes----046113351621
HMUK485914:1:Tyes0----1231--
HNEP81032:0:Tyes169----0--
HPY:0:Tno------0-
HSAL478009:4:Tyes-----0--
HSOM205914:1:Tyes55358361360359-20
HSOM228400:0:Tno083808182-517519
HSP64091:2:Tno-----0--
HWAL362976:1:Tyes-----0--
IHOS453591:0:Tyes-----0--
ILOI283942:0:Tyes1110567820
JSP290400:1:Tyes-----29003
JSP375286:0:Tyes6371562-064669
KPNE272620:2:Tyes447446567920
KRAD266940:2:Fyes----02200--
LACI272621:0:Tyes-------0
LBIF355278:2:Tyes----16210305-
LBIF456481:2:Tno----16660312-
LBOR355276:1:Tyes----0917971-
LBOR355277:1:Tno----0728782-
LBRE387344:2:Tyes-------0
LCAS321967:1:Tyes-------0
LCHO395495:0:Tyes1291-6-8143930
LDEL321956:0:Tyes-------0
LDEL390333:0:Tyes-------0
LGAS324831:0:Tyes-------0
LHEL405566:0:Tyes-------0
LINN272626:1:Tno-------0
LINT189518:1:Tyes----03081594-
LINT267671:1:Tno----12279930-
LINT363253:3:Tyes-----0559280
LJOH257314:0:Tyes-------0
LLAC272622:5:Tyes-------0
LLAC272623:0:Tyes-------0
LMES203120:1:Tyes-------0
LMON169963:0:Tno-------0
LMON265669:0:Tyes-----562-0
LPLA220668:0:Tyes-------0
LPNE272624:0:Tno778---77601069142
LPNE297245:1:Fno607608--6090993141
LPNE297246:1:Fyes676675--6740978143
LPNE400673:0:Tno32--014633071317
LREU557436:0:Tyes-------0
LSAK314315:0:Tyes-------0
LSPH444177:1:Tyes----2915-02062
LWEL386043:0:Tyes------0191
LXYL281090:0:Tyes----0---
MABS561007:1:Tyes0---5181953--
MAER449447:0:Tyes----0338620951431
MAQU351348:2:Tyes222016-181930
MART243272:0:Tyes-------0
MAVI243243:0:Tyes----9680--
MBOV233413:0:Tno----16480--
MBOV410289:0:Tno----17230--
MCAP243233:0:Tyes012231153-1155115611491146
MCAP340047:0:Tyes-------0
MEXT419610:0:Tyes2023----37402
MFLA265072:0:Tyes904-321069
MFLO265311:0:Tyes-------0
MGIL350054:3:Tyes----10730--
MHUN323259:0:Tyes-----0--
MJAN243232:2:Tyes-----0--
MKAN190192:0:Tyes-----0--
MLAB410358:0:Tyes-----0--
MLEP272631:0:Tyes-----0--
MLOT266835:2:Tyes1609---1882015881590
MMAG342108:0:Tyes-----162702
MMAR267377:0:Tyes-----0--
MMAR368407:0:Tyes-----0--
MMAR394221:0:Tyes0-------
MMAR402880:1:Tyes-----0--
MMAR426368:0:Tyes-----0--
MMAR444158:0:Tyes-----0--
MMYC272632:0:Tyes-------0
MPET420662:1:Tyes1216-2-090969
MSME246196:0:Tyes3843---01277--
MSP164756:1:Tno----01697--
MSP164757:0:Tno----01663--
MSP189918:2:Tyes----01726--
MSP266779:3:Tyes10---302162402
MSP400668:0:Tyes01015-1312158160
MSP409:2:Tyes0---4516-46954693
MSTA339860:0:Tyes-----0--
MSUC221988:0:Tyes02038204120402039-118115
MTBCDC:0:Tno----17820--
MTBRV:0:Tno----16460--
MTHE187420:0:Tyes-----0--
MTHE264732:0:Tyes----1213-3570
MTUB336982:0:Tno----16210--
MTUB419947:0:Tyes----17160--
MVAN350058:0:Tyes----01015--
MXAN246197:0:Tyes2744---315210830243
NARO279238:0:Tyes-----014101408
NEUR228410:0:Tyes0872--831383826823
NEUT335283:2:Tyes4180--9121124907904
NFAR247156:2:Tyes----5030--
NGON242231:0:Tyes271----1190760
NHAM323097:2:Tyes3635---0251919641962
NMEN122586:0:Tno616----0366288
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