CANDIDATE ID: 251

CANDIDATE ID: 251

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9917275e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7326 (iscR) (b2531)
   Products of gene:
     - G7326-MONOMER (IscR transcriptional dual regulator)
       Regulatees:
        TU0-14811 (rnlA)
        TU0-8481 (nfuA)
        TU0-8480 (erpA)
        TU0-8482 (ydiU)
        TU0-8484 (napFDAGHBC)
        TU0-1881 (iscRSUA)
        TU0-2621 (sufABCDSE)
        TU00288 (hyaABCDEF)

- G7325 (iscS) (b2530)
   Products of gene:
     - G7325-MONOMER (cysteine desulfurase monomer)
     - CPLX0-248 (cysteine desulfurase)
       Reactions:
        a ThiI sulfur-carrier protein + L-cysteine  ->  a ThiI persulfide + L-alanine
         In pathways
         THISYN-PWY (thiamin biosynthesis I)
        L-cysteine + a protein L-cysteine  ->  a protein-S-sulfanylcysteine + L-alanine
         In pathways
         PWY0-1061 (superpathway of alanine biosynthesis)
         PWY0-1021 (alanine biosynthesis III)

- G7321 (yfgM) (b2513)
   Products of gene:
     - G7321-MONOMER (conserved protein)

- EG12401 (rlmN) (b2517)
   Products of gene:
     - EG12401-MONOMER (23S rRNA m2A2503 methyltransferase)
       Reactions:
        S-adenosyl-L-methionine + adenine2503 in 23S rRNA  ->  S-adenosyl-L-homocysteine + 2-methyladenine2503 in 23S rRNA

- EG12311 (iscX) (b2524)
   Products of gene:
     - EG12311-MONOMER (protein with possible role in iron-sulfur cluster biogenesis)

- EG12131 (hscB) (b2527)
   Products of gene:
     - EG12131-MONOMER (Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly)

- EG12130 (hscA) (b2526)
   Products of gene:
     - EG12130-MONOMER (chaperone, member of Hsp70 protein family)
       Reactions:
        ATP + H2O  ->  ADP + phosphate + 2 H+

- EG10015 (rodZ) (b2516)
   Products of gene:
     - EG10015-MONOMER (rod shape-determining membrane protein)



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 134
Effective number of orgs (counting one per cluster within 468 clusters): 81

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VFIS312309 ncbi Vibrio fischeri ES1148
VCHO345073 ncbi Vibrio cholerae O3958
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169618
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252598
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
SSP94122 ncbi Shewanella sp. ANA-38
SSON300269 ncbi Shigella sonnei Ss0468
SSED425104 ncbi Shewanella sediminis HAW-EB38
SPRO399741 ncbi Serratia proteamaculans 5688
SPEA398579 ncbi Shewanella pealeana ATCC 7003458
SONE211586 ncbi Shewanella oneidensis MR-18
SLOI323850 ncbi Shewanella loihica PV-48
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SHAL458817 ncbi Shewanella halifaxensis HAW-EB48
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1978
SDEN318161 ncbi Shewanella denitrificans OS2178
SBOY300268 ncbi Shigella boydii Sb2278
SBAL402882 ncbi Shewanella baltica OS1858
SBAL399599 ncbi Shewanella baltica OS1958
RSOL267608 ncbi Ralstonia solanacearum GMI10008
RMET266264 ncbi Ralstonia metallidurans CH348
REUT381666 ncbi Ralstonia eutropha H168
REUT264198 ncbi Ralstonia eutropha JMP1348
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30008
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a8
PSTU379731 ncbi Pseudomonas stutzeri A15018
PSP56811 Psychrobacter sp.7
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-18
PPUT351746 ncbi Pseudomonas putida F18
PPUT160488 ncbi Pseudomonas putida KT24408
PPRO298386 ncbi Photobacterium profundum SS98
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PMEN399739 ncbi Pseudomonas mendocina ymp8
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO18
PING357804 ncbi Psychromonas ingrahamii 378
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFLU220664 ncbi Pseudomonas fluorescens Pf-58
PFLU216595 ncbi Pseudomonas fluorescens SBW258
PFLU205922 ncbi Pseudomonas fluorescens Pf0-18
PENT384676 ncbi Pseudomonas entomophila L488
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PAER208964 ncbi Pseudomonas aeruginosa PAO18
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA148
NMEN374833 ncbi Neisseria meningitidis 0534427
NMEN272831 ncbi Neisseria meningitidis FAM187
NMEN122587 ncbi Neisseria meningitidis Z24917
NMEN122586 ncbi Neisseria meningitidis MC587
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E8
MPET420662 ncbi Methylibium petroleiphilum PM17
MMAG342108 ncbi Magnetospirillum magneticum AMB-17
MFLA265072 ncbi Methylobacillus flagellatus KT8
MCAP243233 ncbi Methylococcus capsulatus Bath8
LCHO395495 ncbi Leptothrix cholodnii SP-67
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
JSP375286 ncbi Janthinobacterium sp. Marseille8
HSOM228400 ncbi Haemophilus somnus 23367
HSOM205914 ncbi Haemophilus somnus 129PT7
HINF71421 ncbi Haemophilus influenzae Rd KW208
HINF374930 ncbi Haemophilus influenzae PittEE8
HINF281310 ncbi Haemophilus influenzae 86-028NP8
HDUC233412 ncbi Haemophilus ducreyi 35000HP8
HARS204773 ncbi Herminiimonas arsenicoxydans7
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DARO159087 ncbi Dechloromonas aromatica RCB8
CVIO243365 ncbi Chromobacterium violaceum ATCC 124728
CPSY167879 ncbi Colwellia psychrerythraea 34H8
BVIE269482 ncbi Burkholderia vietnamiensis G48
BTHA271848 ncbi Burkholderia thailandensis E2647
BSP36773 Burkholderia sp.8
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BPET94624 Bordetella petrii7
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128227
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BCEN331272 ncbi Burkholderia cenocepacia HI24248
BCEN331271 ncbi Burkholderia cenocepacia AU 10548
BBRO257310 ncbi Bordetella bronchiseptica RB507
BAMB398577 ncbi Burkholderia ambifaria MC40-68
BAMB339670 ncbi Burkholderia ambifaria AMMD8
ASP76114 ncbi Aromatoleum aromaticum EbN18
ASP62977 ncbi Acinetobacter sp. ADP18
ASP62928 ncbi Azoarcus sp. BH728
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL038
APLE416269 ncbi Actinobacillus pleuropneumoniae L208
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232708
ABAU360910 ncbi Bordetella avium 197N7
AAVE397945 ncbi Acidovorax citrulli AAC00-17


Names of the homologs of the genes in the group in each of these orgs
  G7326   G7325   G7321   EG12401   EG12311   EG12131   EG12130   EG10015   
YPSE349747 YPSIP31758_1167YPSIP31758_1168YPSIP31758_1188YPSIP31758_1183YPSIP31758_1174YPSIP31758_1171YPSIP31758_1172YPSIP31758_1185
YPSE273123 YPTB2860YPTB2859YPTB2839YPTB2844YPTB2853YPTB2856YPTB2855YPTB2842
YPES386656 YPDSF_2242YPDSF_2241YPDSF_2222YPDSF_2227YPDSF_2235YPDSF_2238YPDSF_2237YPDSF_2225
YPES377628 YPN_1240YPN_1241YPN_1261YPN_1256YPN_1247YPN_1244YPN_1245YPN_1258
YPES360102 YPA_2338YPA_2337YPA_2317YPA_2322YPA_2331YPA_2334YPA_2333YPA_2320
YPES349746 YPANGOLA_A0436YPANGOLA_A0435YPANGOLA_A0416YPANGOLA_A0421YPANGOLA_A0429YPANGOLA_A0432YPANGOLA_A0431YPANGOLA_A0419
YPES214092 YPO2897YPO2896YPO2877YPO2882YPO2890YPO2893YPO2892YPO2880
YPES187410 Y1333Y1334Y1355Y1350Y1341Y1338Y1339Y1352
YENT393305 YE1056YE1057YE1075YE1070YE1063YE1060YE1061YE1072
VVUL216895 VV1_0439VV1_0438VV1_0425VV1_0429VV1_0432VV1_0435VV1_0434VV1_0428
VVUL196600 VV0754VV0755VV0768VV0764VV0761VV0758VV0759VV0765
VPAR223926 VP0595VP0596VP0610VP0605VP0602VP0599VP0600VP0607
VFIS312309 VF0616VF0617VF0631VF0626VF0623VF0620VF0621VF0628
VCHO345073 VC0395_A0276VC0395_A0277VC0395_A0290VC0395_A0286VC0395_A0283VC0395_A0280VC0395_A0281VC0395_A0287
VCHO VC0747VC0748VC0761VC0757VC0754VC0751VC0752VC0758
TDEN292415 TBD_1163TBD_1164TBD_0596TBD_0591TBD_1170TBD_1167TBD_1168TBD_0593
STYP99287 STM2544STM2543STM2521STM2525STM2537STM2540STM2539STM2524
SSP94122 SHEWANA3_2281SHEWANA3_2280SHEWANA3_1231SHEWANA3_1226SHEWANA3_2273SHEWANA3_2277SHEWANA3_2276SHEWANA3_1228
SSON300269 SSO_2613SSO_2612SSO_2595SSO_2599SSO_2606SSO_2609SSO_2608SSO_2598
SSED425104 SSED_2872SSED_2871SSED_1434SSED_1429SSED_2863SSED_2868SSED_2867SSED_1431
SPRO399741 SPRO_3628SPRO_3627SPRO_3607SPRO_3612SPRO_3621SPRO_3624SPRO_3623SPRO_3610
SPEA398579 SPEA_1487SPEA_1488SPEA_1307SPEA_1302SPEA_1496SPEA_1491SPEA_1492SPEA_1304
SONE211586 SO_2263SO_2264SO_3310SO_3315SO_2271SO_2267SO_2268SO_3313
SLOI323850 SHEW_2318SHEW_2317SHEW_1292SHEW_1287SHEW_2311SHEW_2314SHEW_2313SHEW_1289
SHIGELLA S2750YFHOS2731YFGBYFHJYFHEHSCAYFGA
SHAL458817 SHAL_1571SHAL_1572SHAL_1369SHAL_1364SHAL_1578SHAL_1575SHAL_1576SHAL_1366
SFLE373384 SFV_2579SFV_2578SFV_2560SFV_2564SFV_2572SFV_2575SFV_2574SFV_2563
SFLE198214 AAN44077.1AAN44076.1AAN44059.1AAN44063.1AAN44070.1AAN44073.1AAN44072.1AAN44062.1
SENT454169 SEHA_C2806SEHA_C2805SEHA_C2778SEHA_C2783SEHA_C2799SEHA_C2802SEHA_C2801SEHA_C2782
SENT321314 SCH_2538SCH_2537SCH_2518SCH_2522SCH_2532SCH_2534SCH_2521
SENT295319 SPA0322SPA0323SPA0346SPA0342SPA0329SPA0326SPA0327SPA0343
SENT220341 STY2790STY2789STY2766STY2770STY2783STY2786STY2785STY2769
SENT209261 T0312T0313T0335T0331T0319T0316T0317T0332
SDYS300267 SDY_2727SDY_2726SDY_2709SDY_2713SDY_2720SDY_2723SDY_2722SDY_2712
SDEN318161 SDEN_1457SDEN_1458SDEN_1258SDEN_1253SDEN_0277SDEN_1461SDEN_1462SDEN_1255
SBOY300268 SBO_2555SBO_2554SBO_2537SBO_2541SBO_2548SBO_2551SBO_2550SBO_2540
SBAL402882 SHEW185_2387SHEW185_2386SHEW185_3003SHEW185_3008SHEW185_2379SHEW185_2383SHEW185_2382SHEW185_3006
SBAL399599 SBAL195_2503SBAL195_2502SBAL195_3146SBAL195_3151SBAL195_2495SBAL195_2499SBAL195_2498SBAL195_3149
RSOL267608 RSC1018RSC1019RSC1217RSC1212RSC1026RSC1023RSC1024RSC1214
RMET266264 RMET_1024RMET_1025RMET_2104RMET_2109RMET_1031RMET_1028RMET_1029RMET_2107
REUT381666 H16_A1157H16_A1158H16_A2362H16_A2367H16_A1165H16_A1162H16_A1163H16_A2365
REUT264198 REUT_A1057REUT_A1058REUT_A2084REUT_A2089REUT_A1065REUT_A1062REUT_A1063REUT_A2087
PSYR223283 PSPTO_1422PSPTO_1423PSPTO_1436PSPTO_1431PSPTO_1429PSPTO_1426PSPTO_1427PSPTO_1433
PSYR205918 PSYR_1236PSYR_1237PSYR_1250PSYR_1245PSYR_1243PSYR_1240PSYR_1241PSYR_1247
PSTU379731 PST_3043PST_3042PST_3029PST_3034PST_3036PST_3039PST_3038PST_3032
PSP56811 PSYCPRWF_1628PSYCPRWF_1629PSYCPRWF_1905PSYCPRWF_0641PSYCPRWF_1632PSYCPRWF_1633PSYCPRWF_1903
PSP296591 BPRO_2177BPRO_2178BPRO_2606BPRO_2611BPRO_2181BPRO_2182BPRO_2609
PPUT76869 PPUTGB1_0884PPUTGB1_0885PPUTGB1_0898PPUTGB1_0893PPUTGB1_0891PPUTGB1_0888PPUTGB1_0889PPUTGB1_0895
PPUT351746 PPUT_0871PPUT_0872PPUT_0885PPUT_0880PPUT_0878PPUT_0875PPUT_0876PPUT_0882
PPUT160488 PP_0841PP_0842PP_0855PP_0850PP_0848PP_0845PP_0846PP_0852
PPRO298386 PBPRA0749PBPRA0750PBPRA0765PBPRA0760PBPRA0756PBPRA0753PBPRA0754PBPRA0762
PMUL272843 PM0317PM0318PM2012PM2007PM0321PM0322PM2009
PMEN399739 PMEN_3512PMEN_3511PMEN_3498PMEN_3503PMEN_3505PMEN_3508PMEN_3507PMEN_3501
PLUM243265 PLU3284PLU3283PLU1378PLU1373PLU3277PLU3280PLU3279PLU1375
PING357804 PING_1323PING_1324PING_1170PING_1165PING_1330PING_1327PING_1328PING_1167
PHAL326442 PSHAA2672PSHAA2671PSHAB0136PSHAB0141PSHAA2668PSHAA2667PSHAB0139
PFLU220664 PFL_4966PFL_4965PFL_4952PFL_4957PFL_4959PFL_4962PFL_4961PFL_4955
PFLU216595 PFLU5069PFLU5068PFLU5055PFLU5060PFLU5062PFLU5065PFLU5064PFLU5058
PFLU205922 PFL_4613PFL_4612PFL_4599PFL_4604PFL_4606PFL_4609PFL_4608PFL_4602
PENT384676 PSEEN1009PSEEN1010PSEEN1023PSEEN1018PSEEN1016PSEEN1013PSEEN1014PSEEN1020
PATL342610 PATL_1237PATL_1238PATL_3124PATL_3129PATL_1241PATL_1242PATL_3127
PAER208964 PA3815PA3814PA3801PA3806PA3808PA3811PA3810PA3804
PAER208963 PA14_14710PA14_14730PA14_14900PA14_14830PA14_14810PA14_14770PA14_14780PA14_14860
NMEN374833 NMCC_1291NMCC_1293NMCC_0811NMCC_1221NMCC_1056NMCC_1297NMCC_1050
NMEN272831 NMC1314NMC1315NMC0793NMC1245NMC1076NMC1319NMC1070
NMEN122587 NMA1593NMA1594NMA1064NMA1522NMA1347NMA1598NMA1340
NMEN122586 NMB_1378NMB_1379NMB_0853NMB_1308NMB_1175NMB_1383NMB_1169
MSUC221988 MS1727MS1726MS1921MS1916MS1719MS1722MS1721MS1918
MPET420662 MPE_A2263MPE_A2262MPE_A1994MPE_A1999MPE_A2259MPE_A2258MPE_A1997
MMAG342108 AMB3030AMB3028AMB1342AMB1124AMB3022AMB3025AMB3024
MFLA265072 MFLA_0810MFLA_0808MFLA_1616MFLA_1623MFLA_1920MFLA_0805MFLA_0804MFLA_1621
MCAP243233 MCA_2883MCA_0247MCA_2890MCA_2887MCA_2825MCA_0251MCA_0252MCA_1363
LCHO395495 LCHO_1048LCHO_1360LCHO_2866LCHO_2871LCHO_1044LCHO_1364LCHO_2869
KPNE272620 GKPORF_B2197GKPORF_B2196GKPORF_B2176GKPORF_B2181GKPORF_B2190GKPORF_B2193GKPORF_B2192GKPORF_B2179
JSP375286 MMA_1251MMA_1252MMA_2125MMA_2130MMA_1258MMA_1255MMA_1256MMA_2128
HSOM228400 HSM_0153HSM_0154HSM_0731HSM_0364HSM_0157HSM_0158HSM_0728
HSOM205914 HS_0280HS_0281HS_0406HS_1198HS_0284HS_0285HS_0403
HINF71421 HI_0379HI_0378HI_0370HI_0365HI_0371HI_0375HI_0373HI_0367
HINF374930 CGSHIEE_01110CGSHIEE_01115CGSHIEE_01155CGSHIEE_01185CGSHIEE_01150CGSHIEE_01130CGSHIEE_01140CGSHIEE_01175
HINF281310 NTHI0499NTHI0498NTHI0490NTHI0485NTHI0491NTHI0495NTHI0493NTHI0487
HDUC233412 HD_1080HD_1082HD_1040HD_0319HD_1089HD_1085HD_1087HD_1036
HARS204773 HEAR2240HEAR2239HEAR1266HEAR1261HEAR2233HEAR2236HEAR2235
ESP42895 ENT638_3028ENT638_3027ENT638_3007ENT638_3011ENT638_3021ENT638_3024ENT638_3023ENT638_3010
EFER585054 EFER_0641EFER_0642EFER_0659EFER_0655EFER_0648EFER_0645EFER_0646EFER_0656
ECOO157 Z3798YFHOZ3776YFGBYFHJYFHEHSCAYFGA
ECOL83334 ECS3397ECS3396ECS3375ECS3379ECS3390ECS3393ECS3392ECS3378
ECOL585397 ECED1_2962ECED1_2961ECED1_2944ECED1_2948ECED1_2955ECED1_2958ECED1_2957ECED1_2947
ECOL585057 ECIAI39_2732ECIAI39_2731ECIAI39_2714ECIAI39_2718ECIAI39_2725ECIAI39_2728ECIAI39_2727ECIAI39_2717
ECOL585056 ECUMN_2851ECUMN_2850ECUMN_2833ECUMN_2837ECUMN_2844ECUMN_2847ECUMN_2846ECUMN_2836
ECOL585055 EC55989_2816EC55989_2815EC55989_2798EC55989_2802EC55989_2809EC55989_2812EC55989_2811EC55989_2801
ECOL585035 ECS88_2707ECS88_2706ECS88_2689ECS88_2693ECS88_2700ECS88_2703ECS88_2702ECS88_2692
ECOL585034 ECIAI1_2583ECIAI1_2582ECIAI1_2565ECIAI1_2569ECIAI1_2576ECIAI1_2579ECIAI1_2578ECIAI1_2568
ECOL481805 ECOLC_1146ECOLC_1147ECOLC_1164ECOLC_1160ECOLC_1153ECOLC_1150ECOLC_1151ECOLC_1161
ECOL469008 ECBD_1153ECBD_1154ECBD_1173ECBD_1169ECBD_1160ECBD_1157ECBD_1158ECBD_1170
ECOL439855 ECSMS35_2684ECSMS35_2683ECSMS35_2665ECSMS35_2669ECSMS35_2676ECSMS35_2679ECSMS35_2678ECSMS35_2668
ECOL413997 ECB_02423ECB_02422ECB_02405ECB_02409ECB_02416ECB_02419ECB_02418ECB_02408
ECOL409438 ECSE_2817ECSE_2816ECSE_2799ECSE_2803ECSE_2810ECSE_2813ECSE_2812ECSE_2802
ECOL405955 APECO1_3994APECO1_3995APECO1_4011APECO1_4007APECO1_3998APECO1_3999APECO1_4008
ECOL364106 UTI89_C2853UTI89_C2852UTI89_C2834UTI89_C2838UTI89_C2846UTI89_C2849UTI89_C2848UTI89_C2837
ECOL362663 ECP_2536ECP_2535ECP_2518ECP_2522ECP_2529ECP_2532ECP_2531ECP_2521
ECOL331111 ECE24377A_2816ECE24377A_2815ECE24377A_2797ECE24377A_2801ECE24377A_2808ECE24377A_2811ECE24377A_2810ECE24377A_2800
ECOL316407 ECK2528:JW2515:B2531ECK2527:JW2514:B2530ECK2509:JW2497:B2513ECK2513:JW2501:B2517ECK2521:JW2508:B2524ECK2524:JW2511:B2527ECK2523:JW2510:B2526ECK2512:JW2500:B2516
ECOL199310 C3057C3056C3035C3039C3049C3052C3051C3038
ECAR218491 ECA3238ECA3237ECA3218ECA3223ECA3231ECA3234ECA3233ECA3221
DARO159087 DARO_1948DARO_1950DARO_2983DARO_2988DARO_1956DARO_1953DARO_1954DARO_2986
CVIO243365 CV_1095CV_1094CV_3536CV_3541CV_1087CV_1091CV_1089CV_3539
CPSY167879 CPS_1131CPS_1132CPS_4250CPS_4255CPS_4263CPS_1135CPS_1136CPS_4253
BVIE269482 BCEP1808_2206BCEP1808_2205BCEP1808_1737BCEP1808_1741BCEP1808_2199BCEP1808_2202BCEP1808_2201BCEP1808_1740
BTHA271848 BTH_I1874BTH_I1875BTH_I2236BTH_I2232BTH_I1881BTH_I1878BTH_I1879
BSP36773 BCEP18194_A5433BCEP18194_B2412BCEP18194_A5111BCEP18194_A5115BCEP18194_A5426BCEP18194_A5429BCEP18194_A5428BCEP18194_A5114
BPSE320373 BURPS668_2600BURPS668_2599BURPS668_2188BURPS668_2192BURPS668_2593BURPS668_2596BURPS668_2595
BPSE320372 BURPS1710B_A2966BURPS1710B_A2965BURPS1710B_A2555BURPS1710B_A2559BURPS1710B_A2959BURPS1710B_A2962BURPS1710B_A2961
BPSE272560 BPSL2290BPSL2289BPSL1515BPSL1511BPSL2283BPSL2286BPSL2285
BPET94624 BPET2778BPET2777BPET2021BPET2017BPET2771BPET2774BPET2773
BPER257313 BP1798BP1799BP2197BP2201BP1805BP1802BP1803
BPAR257311 BPP2027BPP2028BPP2853BPP2857BPP2034BPP2031BPP2032
BMAL320389 BMA10247_1490BMA10247_1489BMA10247_1105BMA10247_1109BMA10247_1483BMA10247_1486BMA10247_1485
BMAL320388 BMASAVP1_A2218BMASAVP1_A2217BMASAVP1_A1833BMASAVP1_A1837BMASAVP1_A2211BMASAVP1_A2214BMASAVP1_A2213
BMAL243160 BMA_1709BMA_1708BMA_1343BMA_1347BMA_1702BMA_1705BMA_1704
BCEN331272 BCEN2424_2127BCEN2424_2126BCEN2424_1810BCEN2424_1814BCEN2424_2120BCEN2424_2123BCEN2424_2122BCEN2424_1813
BCEN331271 BCEN_5950BCEN_5951BCEN_6269BCEN_6265BCEN_5957BCEN_5954BCEN_5955BCEN_6266
BBRO257310 BB2275BB2276BB3174BB3178BB2282BB2279BB2280
BAMB398577 BAMMC406_2037BAMMC406_2036BAMMC406_1721BAMMC406_1725BAMMC406_2030BAMMC406_2033BAMMC406_2032BAMMC406_1724
BAMB339670 BAMB_2164BAMB_2163BAMB_1748BAMB_1752BAMB_2157BAMB_2160BAMB_2159BAMB_1751
ASP76114 EBA6404EBA6401EBA1259EBA1268EBA6395EBA6397EBA6396EBA1262
ASP62977 ACIAD1405ACIAD1404ACIAD0563ACIAD0557ACIAD0555ACIAD1400ACIAD1399ACIAD0560
ASP62928 AZO2018AZO2016AZO0929AZO0924AZO2010AZO2013AZO2012AZO0926
ASAL382245 ASA_2613ASA_2612ASA_2597ASA_2602ASA_2608ASA_2607ASA_2600
APLE434271 APJL_0942APJL_0941APJL_1195APJL_1285APJL_0933APJL_0938APJL_0935APJL_1199
APLE416269 APL_0932APL_0931APL_1174APL_1274APL_0923APL_0928APL_0925APL_1177
AHYD196024 AHA_1746AHA_1747AHA_1761AHA_1756AHA_1750AHA_1751AHA_1758
AFER243159 AFE_2368AFE_2367AFE_1155AFE_1160AFE_2361AFE_2364AFE_2363AFE_1158
ABAU360910 BAV1507BAV1508BAV2342BAV2346BAV1514BAV1511BAV1512
AAVE397945 AAVE_2442AAVE_2443AAVE_1426AAVE_1421AAVE_2446AAVE_2447AAVE_1423


Organism features enriched in list (features available for 128 out of the 134 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00378211192
Arrangment:Pairs 0.000194239112
Arrangment:Singles 0.006490074286
Disease:Bubonic_plague 0.000102166
Disease:Dysentery 0.000102166
Disease:Gastroenteritis 0.00002801013
Disease:Meningitis_and_septicemia 0.002239244
Endospores:No 0.000017227211
GC_Content_Range4:0-40 9.777e-198213
GC_Content_Range4:40-60 8.855e-1079224
GC_Content_Range7:30-40 3.423e-128166
GC_Content_Range7:50-60 2.769e-846107
GC_Content_Range7:60-70 0.002453041134
Genome_Size_Range5:0-2 1.011e-144155
Genome_Size_Range5:2-4 1.288e-818197
Genome_Size_Range5:4-6 8.689e-2084184
Genome_Size_Range5:6-10 0.00004992247
Genome_Size_Range9:1-2 3.399e-114128
Genome_Size_Range9:2-3 0.000263813120
Genome_Size_Range9:3-4 0.0000834577
Genome_Size_Range9:4-5 2.096e-84396
Genome_Size_Range9:5-6 1.198e-84188
Genome_Size_Range9:6-8 2.827e-62138
Gram_Stain:Gram_Neg 1.059e-23119333
Habitat:Multiple 0.001021053178
Habitat:Specialized 0.0080582553
Motility:No 1.394e-99151
Motility:Yes 6.673e-987267
Optimal_temp.:35-37 8.558e-81213
Oxygen_Req:Anaerobic 4.021e-84102
Oxygen_Req:Facultative 2.548e-1481201
Pathogenic_in:Human 0.000075565213
Pathogenic_in:No 3.244e-726226
Shape:Coccus 0.0001184682
Shape:Rod 3.453e-13110347
Shape:Spiral 0.0016985134
Temp._range:Mesophilic 0.0013354115473
Temp._range:Psychrophilic 0.004197669
Temp._range:Thermophilic 0.0013440135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 219
Effective number of orgs (counting one per cluster within 468 clusters): 176

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TSP28240 Thermotoga sp.1
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SGOR29390 Streptococcus gordonii Challis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
NSP35761 Nocardioides sp.0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101520
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124441
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FMAG334413 ncbi Finegoldia magna ATCC 293281
FALN326424 ncbi Frankia alni ACN14a1
EFAE226185 ncbi Enterococcus faecalis V5831
DSP216389 ncbi Dehalococcoides sp. BAV11
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1351
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCLA66692 ncbi Bacillus clausii KSM-K161
BCIC186490 Candidatus Baumannia cicadellinicola1
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7326   G7325   G7321   EG12401   EG12311   EG12131   EG12130   EG10015   
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX1562
TWHI218496
TWHI203267
TVOL273116
TSP28240 TRQ2_1119
TPET390874 TPET_1011
TPEN368408
TPAL243276
TMAR243274 TM_1715
TLET416591 TLET_1852
TKOD69014
TDEN243275
TACI273075
STRO369723 STROP_1327
STOK273063
STHE322159 STER_1660
STHE299768 STR1696
STHE264199 STU1696
SSUI391296 SSU98_1686
SSUI391295
SSP84588
SSP387093 SUN_1872
SSP1131 SYNCC9605_2674
SSOL273057
SPYO370554
SPYO370553
SPYO370552 MGAS10270_SPY1277
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221 SP70585_0811
SPNE487214 SPH_0867
SPNE487213
SPNE171101 SPR0676
SPNE170187 SPN04149
SPNE1313
SMUT210007 SMU_522
SMAR399550
SGOR29390 SGO_0654
SERY405948
SARE391037
SAGA211110 GBS0505
SAGA208435 SAG_0458
SAGA205921 SAK_0559
SACI330779
RSP101510 RHA1_RO04161
RSAL288705
PTOR263820
PRUM264731
PPEN278197
PMAR93060
PMAR74547 PMT2045
PMAR74546
PMAR167546
PMAR167542
PMAR167540
PMAR146891
PLUT319225 PLUT_0621
PISL384616
PINT246198 PIN_A1266
PHOR70601
PGIN242619 PG_2065
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OIHE221109 OB2016
NSP35761
NPHA348780
NFAR247156
NARO279238 SARO_1436
MVAN350058 MVAN_4419
MTUB419947 MRA_1295
MTUB336982 TBFG_11313
MTHE349307 MTHE_0872
MTHE187420
MTBRV RV1287
MTBCDC MT1325
MSYN262723
MSTA339860 MSP_1002
MSP189918 MKMS_3989
MSP164757 MJLS_3930
MSP164756 MMCS_3915
MSME246196 MSMEG_4974
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM0109
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_1914
MMAR267377
MLEP272631
MLAB410358 MLAB_0266
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2213
MGIL350054 MFLV_2276
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289 BCG_1346
MBOV233413 MB1318
MBAR269797 MBAR_A3201
MAVI243243
MART243272
MAEO419665
MACE188937 MA2718
MABS561007 MAB_1093C
LXYL281090
LWEL386043 LWE1528
LSAK314315
LREU557436
LPLA220668 LP_2304
LMON169963 LMO1515
LMES203120
LLAC272623
LLAC272622 LACR_0188
LJOH257314
LINT267671 LIC_10524
LINT189518 LA3704
LINN272626 LIN1550
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277 LBJ_0433
LBOR355276 LBL_2644
LBIF456481 LEPBI_I3379
LBIF355278 LBF_3265
LACI272621
KRAD266940
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP0206
HPYL357544 HPAG1_0222
HPY HP0220
HMUK485914
HMAR272569
HBUT415426
HACI382638 HAC_1498
FSP1855 FRANEAN1_1166
FSP106370 FRANCCI3_3577
FMAG334413 FMG_0624
FALN326424 FRAAL5776
EFAE226185 EF_2048
DSP216389 DEHABAV1_1341
CTRA471473
CTRA471472
CSUL444179
CPRO264201 PC0695
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMUR243161
CMIC443906
CMIC31964
CMET456442 MBOO_0356
CMAQ397948
CKOR374847
CJEJ407148 C8J_1617
CJEJ360109 JJD26997_2087
CJEJ354242 CJJ81176_0007
CJEJ195099 CJE_1882
CJEJ192222 CJ1713
CJEI306537 JK1169
CGLU196627
CFET360106 CFF8240_1816
CFEL264202
CEFF196164 CE1907
CDIP257309
CCUR360105 CCV52592_1119
CCON360104 CCC13826_1892
CCHL340177 CAG_0825
CCAV227941
CABO218497
BTUR314724 BT0518
BTHE226186 BT_4372
BLON206672 BL1508
BHER314723 BH0518
BGAR290434 BG0529
BFRA295405 BF1078
BFRA272559 BF0995
BCLA66692 ABC1584
BCIC186490 BCI_0006
BBUR224326 BB_0518
BAFZ390236 BAPKO_0545
AYEL322098
AURANTIMONAS
ASP1667
APER272557
ANAE240017 ANA_1171
ALAI441768 ACL_0251
AFUL224325 AF_0186
ACEL351607 ACEL_1536
AAUR290340


Organism features enriched in list (features available for 204 out of the 219 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00103494592
Arrangment:Pairs 0.000017221112
Disease:Pharyngitis 0.000205388
Disease:Wide_range_of_infections 8.047e-61111
Disease:bronchitis_and_pneumonitis 0.000205388
Endospores:No 9.759e-26132211
Endospores:Yes 0.0001477753
GC_Content_Range4:0-40 2.178e-6100213
GC_Content_Range4:40-60 0.006161766224
GC_Content_Range4:60-100 0.002898438145
GC_Content_Range7:30-40 0.000012980166
GC_Content_Range7:50-60 9.444e-619107
GC_Content_Range7:60-70 0.000320931134
Genome_Size_Range5:0-2 3.497e-21103155
Genome_Size_Range5:4-6 5.315e-1426184
Genome_Size_Range5:6-10 0.0027728847
Genome_Size_Range9:0-1 0.00002202027
Genome_Size_Range9:1-2 3.389e-1583128
Genome_Size_Range9:4-5 8.852e-71496
Genome_Size_Range9:5-6 9.581e-71288
Genome_Size_Range9:6-8 0.0043462638
Gram_Stain:Gram_Neg 9.937e-2361333
Gram_Stain:Gram_Pos 4.723e-982150
Habitat:Host-associated 0.007050484206
Habitat:Multiple 0.007758251178
Habitat:Terrestrial 0.0035621431
Motility:No 6.680e-1186151
Motility:Yes 1.533e-667267
Optimal_temp.:- 0.000081769257
Optimal_temp.:30-35 0.008041167
Optimal_temp.:37 0.000378452106
Oxygen_Req:Aerobic 0.000943349185
Oxygen_Req:Anaerobic 0.001009149102
Pathogenic_in:Animal 0.00082301266
Pathogenic_in:Swine 0.005079655
Salinity:Non-halophilic 0.000081554106
Shape:Coccus 0.00001324682
Shape:Irregular_coccus 6.180e-61517
Shape:Rod 7.367e-1676347
Shape:Sphere 9.811e-61619
Shape:Spiral 2.261e-62534
Temp._range:Hyperthermophilic 2.167e-72023



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181290.6726
AST-PWY (arginine degradation II (AST pathway))120900.6359
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761070.6000
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911080.5670
GLYCOCAT-PWY (glycogen degradation I)2461230.5601
GALACTITOLCAT-PWY (galactitol degradation)73590.5259
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951040.5228
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001310.5197
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911260.4965
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961270.4954
PWY-5386 (methylglyoxal degradation I)3051290.4954
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251090.4929
GLUCONSUPER-PWY (D-gluconate degradation)2291100.4922
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901250.4905
PWY-1269 (CMP-KDO biosynthesis I)3251320.4856
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81590.4829
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491140.4821
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491140.4821
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91630.4804
PWY-5913 (TCA cycle variation IV)3011260.4789
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50440.4780
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149840.4758
PWY0-981 (taurine degradation IV)106680.4699
GLUCARDEG-PWY (D-glucarate degradation I)152840.4667
GLUTDEG-PWY (glutamate degradation II)194970.4663
PWY-5148 (acyl-CoA hydrolysis)2271060.4641
PWY-4041 (γ-glutamyl cycle)2791190.4634
LIPASYN-PWY (phospholipases)2121010.4568
PWY-3162 (tryptophan degradation V (side chain pathway))94610.4451
PWY-5918 (heme biosynthesis I)2721150.4450
PWY-6196 (serine racemization)102640.4441
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183910.4429
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481310.4417
P601-PWY (D-camphor degradation)95610.4408
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212990.4403
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861170.4350
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301030.4333
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391280.4321
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135740.4263
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))191910.4229
PWY0-1182 (trehalose degradation II (trehalase))70490.4199
PWY-46 (putrescine biosynthesis III)138740.4169
KDOSYN-PWY (KDO transfer to lipid IVA I)180870.4161
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116660.4120
DAPLYSINESYN-PWY (lysine biosynthesis I)3421260.4117
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)179860.4101
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291230.4088
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112640.4060
PHESYN (phenylalanine biosynthesis I)110630.4031



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7325   G7321   EG12401   EG12311   EG12131   EG12130   EG10015   
G73260.999920.9988050.9986190.9994360.9997120.9995860.998853
G73250.9988730.9987940.9994430.9997540.9996560.998958
G73210.999720.9987350.9986230.9985730.999741
EG124010.9988930.9985440.9986510.999774
EG123110.9995590.999610.998848
EG121310.999830.998703
EG121300.998624
EG10015



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PAIRWISE BLAST SCORES:

  G7326   G7325   G7321   EG12401   EG12311   EG12131   EG12130   EG10015   
G73260.0f0-------
G7325-0.0f0------
G7321--0.0f0-----
EG12401---0.0f0----
EG12311----0.0f0---
EG12131-----0.0f0--
EG12130------0.0f0-
EG10015-------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12130 EG12131 EG12311 G7325 G7326 (centered at EG12131)
EG10015 EG12401 G7321 (centered at EG10015)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7326   G7325   G7321   EG12401   EG12311   EG12131   EG12130   EG10015   
337/623326/623182/623408/623140/623170/623308/623163/623
AAEO224324:0:Tyes-221-0----
AAVE397945:0:Tyes1005100650-100910102
ABAC204669:0:Tyes76-1095032-
ABAU360910:0:Tyes01835839745-
ABOR393595:0:Tyes1596159515811586--01584
ABUT367737:0:Tyes2107551-0----
ACAU438753:0:Tyes---62--0-
ACEL351607:0:Tyes---0----
ACRY349163:8:Tyes---1698--6320
ADEH290397:0:Tyes-0-1051735-
AEHR187272:0:Tyes12530624620--1266622
AFER243159:0:Tyes11971196051190119311923
AFUL224325:0:Tyes-0------
AHYD196024:0:Tyes011510-4512
ALAI441768:0:Tyes---0----
AMAR234826:0:Tyes262261--0259388-
AMAR329726:9:Tyes6480------
AMET293826:0:Tyes01-325----
ANAE240017:0:Tyes---0----
AORE350688:0:Tyes235234-0----
APHA212042:0:Tyes-310--6003130-
APLE416269:0:Tyes98248346052251
APLE434271:0:Tno98264354052268
ASAL382245:5:Tyes151404-1093
ASP232721:2:Tyes93493350-930929-
ASP62928:0:Tyes11231121501115111811172
ASP62977:0:Tyes8198187208158144
ASP76114:2:Tyes30373035053029303230313
AVAR240292:3:Tyes26970----485-
BABO262698:0:Tno0-------
BABO262698:1:Tno---0--1942-
BAFZ390236:2:Fyes------0-
BAMB339670:3:Tno428427044214244233
BAMB398577:3:Tno323322043163193183
BAMY326423:0:Tyes904--0----
BANT260799:0:Tno576575-0----
BANT261594:2:Tno600599-0----
BANT568206:2:Tyes39493948-0----
BANT592021:2:Tno609608-0----
BAPH198804:0:Tyes-3003060-302303-
BAPH372461:0:Tyes-2122180-214--
BBAC264462:0:Tyes-417-0----
BBAC360095:0:Tyes---34--0-
BBRO257310:0:Tyes01893897745-
BBUR224326:21:Fno------0-
BCAN483179:0:Tno0-------
BCAN483179:1:Tno---0--2022-
BCEN331271:0:Tno01330326745327
BCEN331272:3:Tyes317316043103133123
BCER226900:1:Tyes523--0----
BCER288681:0:Tno516515-0----
BCER315749:1:Tyes582581-0----
BCER405917:1:Tyes554553-0----
BCER572264:1:Tno535534-0----
BCIC186490:0:Tyes-0------
BCLA66692:0:Tyes0-------
BFRA272559:1:Tyes---0----
BFRA295405:0:Tno---0----
BGAR290434:2:Fyes------0-
BHAL272558:0:Tyes01-1251----
BHEN283166:0:Tyes---0--38-
BHER314723:0:Fyes------0-
BJAP224911:0:Fyes---0--157-
BLIC279010:0:Tyes10531052-0----
BLON206672:0:Tyes---0----
BMAL243160:1:Tno32532404318321320-
BMAL320388:1:Tno37337204366369368-
BMAL320389:1:Tyes37537404368371370-
BMEL224914:0:Tno0-------
BMEL224914:1:Tno---0--136-
BMEL359391:1:Tno---0--1876-
BOVI236:0:Tyes0-------
BOVI236:1:Tyes---0--1757-
BPAR257311:0:Tno01784787745-
BPER257313:0:Tyes01351355745-
BPET94624:0:Tyes76576440758761760-
BPSE272560:1:Tyes77277140765768767-
BPSE320372:1:Tno32232104315318317-
BPSE320373:1:Tno39339204386389388-
BPUM315750:0:Tyes905904-0----
BQUI283165:0:Tyes---0--37-
BSP107806:2:Tyes-3123180-314315-
BSP36773:1:Tyes-0------
BSP36773:2:Tyes334-043273303293
BSP376:0:Tyes---77--0-
BSUB:0:Tyes12161215-0----
BSUI204722:0:Tyes0-------
BSUI204722:1:Tyes---0--1977-
BSUI470137:0:Tno0-------
BSUI470137:1:Tno---0--1829-
BTHA271848:1:Tno01354350745-
BTHE226186:0:Tyes---0----
BTHU281309:1:Tno523522-0----
BTHU412694:1:Tno471470-0----
BTRI382640:1:Tyes---0--42-
BTUR314724:0:Fyes------0-
BVIE269482:7:Tyes467466044604634623
BWEI315730:4:Tyes547546-0----
BXEN266265:1:Tyes-0----4-
CACE272562:1:Tyes0550-51----
CAULO:0:Tyes1879--125--0-
CBEI290402:0:Tyes6400-51----
CBLO203907:0:Tyes-415----0-
CBLO291272:0:Tno-430-428--0-
CBOT36826:1:Tno01370-1305----
CBOT441770:0:Tyes01273-1147----
CBOT441771:0:Tno01192-1116----
CBOT441772:1:Tno01341-1277----
CBOT498213:1:Tno01378-1245----
CBOT508765:1:Tyes01-51----
CBOT515621:2:Tyes01554-1492----
CBOT536232:0:Tno01497-1432----
CBUR227377:1:Tyes-0114118--154116
CBUR360115:1:Tno-0105110--151107
CBUR434922:2:Tno-098103--145100
CCHL340177:0:Tyes---0----
CCON360104:2:Tyes---0----
CCUR360105:0:Tyes---0----
CDES477974:0:Tyes6610------
CDIF272563:1:Tyes01-1324----
CEFF196164:0:Fyes---0----
CFET360106:0:Tyes---0----
CHOM360107:1:Tyes0--823----
CHUT269798:0:Tyes0--2877----
CHYD246194:0:Tyes701700-0----
CJAP155077:0:Tyes011813---15
CJEI306537:0:Tyes---0----
CJEJ192222:0:Tyes---0----
CJEJ195099:0:Tno---0----
CJEJ354242:2:Tyes---0----
CJEJ360109:0:Tyes---0----
CJEJ407148:0:Tno---0----
CKLU431943:1:Tyes2300-286----
CMET456442:0:Tyes-0------
CNOV386415:0:Tyes4342-0----
CPEL335992:0:Tyes377-----0-
CPER195102:1:Tyes4645-0----
CPER195103:0:Tno4544-0----
CPER289380:3:Tyes4544-0----
CPHY357809:0:Tyes01074-657----
CPRO264201:0:Fyes---0----
CPSY167879:0:Tyes01302730323040453030
CRUT413404:0:Tyes186185-0124182181-
CSAL290398:0:Tyes0194--2506
CSP501479:7:Fyes---0--39-
CSP501479:8:Fyes0-------
CSP78:2:Tyes2590--182--0-
CTEP194439:0:Tyes-1333-532--0-
CTET212717:0:Tyes01-160----
CVES412965:0:Tyes170169-0110166165-
CVIO243365:0:Tyes87251725220422520
DARO159087:0:Tyes02103510408561038
DDES207559:0:Tyes02476-2355--383-
DETH243164:0:Tyes-0----1111-
DGEO319795:1:Tyes0--134----
DHAF138119:0:Tyes10-265----
DNOD246195:0:Tyes--40--3032
DOLE96561:0:Tyes22172201-2269--0-
DPSY177439:2:Tyes-597-302--0-
DRAD243230:3:Tyes1132--0----
DRED349161:0:Tyes01-947--1736-
DSHI398580:5:Tyes0--1695--1955-
DSP216389:0:Tyes0-------
DSP255470:0:Tno12440------
DVUL882:1:Tyes0134-2363----
ECAN269484:0:Tyes220219--0216215-
ECAR218491:0:Tyes2019051316153
ECHA205920:0:Tyes01--26245-
ECOL199310:0:Tno2221041417163
ECOL316407:0:Tno1918041215143
ECOL331111:6:Tno1918041114133
ECOL362663:0:Tno1817041114133
ECOL364106:1:Tno1918041215143
ECOL405955:2:Tyes171604-13123
ECOL409438:6:Tyes1817041114133
ECOL413997:0:Tno1817041114133
ECOL439855:4:Tno1918041114133
ECOL469008:0:Tno01201674517
ECOL481805:0:Tno01181474515
ECOL585034:0:Tno2120051417164
ECOL585035:0:Tno2120051417164
ECOL585055:0:Tno2120051417164
ECOL585056:2:Tno2120041417163
ECOL585057:0:Tno2120051417164
ECOL585397:0:Tno2120051417164
ECOL83334:0:Tno2221041518173
ECOLI:0:Tno2221051518174
ECOO157:0:Tno2221041518173
EFAE226185:3:Tyes---0----
EFER585054:1:Tyes01211774518
ELIT314225:0:Tyes1013--0----
ERUM254945:0:Tyes243246--0249397-
ERUM302409:0:Tno244245--0248392-
ESP42895:1:Tyes2120041417163
FALN326424:0:Tyes---0----
FJOH376686:0:Tyes-2427-0--864-
FMAG334413:1:Tyes0-------
FNOD381764:0:Tyes71--0----
FNUC190304:0:Tyes11580-468----
FPHI484022:1:Tyes-3810639----
FRANT:0:Tno-9750829----
FSP106370:0:Tyes---0----
FSP1855:0:Tyes---0----
FSUC59374:0:Tyes1141-----0-
FTUL351581:0:Tno-0874256----
FTUL393011:0:Tno-0771231----
FTUL393115:0:Tyes-9640819----
FTUL401614:0:Tyes-2965950----
FTUL418136:0:Tno-4020615----
FTUL458234:0:Tno-0793242----
GBET391165:0:Tyes8851921-424--0-
GFOR411154:0:Tyes-94-0--1730-
GKAU235909:1:Tyes14111410-0----
GMET269799:1:Tyes0121-1816--2663-
GOXY290633:5:Tyes937--0--601-
GSUL243231:0:Tyes25261966-1071--0-
GTHE420246:1:Tyes14401439-0----
GURA351605:0:Tyes12841283-1368--0-
GVIO251221:0:Tyes02491-160300-2372-
HACI382638:1:Tyes-0------
HARS204773:0:Tyes91891750911914913-
HAUR316274:2:Tyes25413468-3898--0-
HCHE349521:0:Tyes3098309730903095--03093
HDUC233412:0:Tyes6736746420681677679639
HHAL349124:0:Tyes0-15821586--12681584
HHEP235279:0:Tyes-0----102-
HINF281310:0:Tyes14135061082
HINF374930:0:Tyes0191584613
HINF71421:0:Tno14135061082
HMOD498761:0:Tyes02-274----
HNEP81032:0:Tyes---10--0-
HPY:0:Tno-0------
HPYL357544:1:Tyes-0------
HPYL85963:0:Tno-0------
HSOM205914:1:Tyes01128922-45125
HSOM228400:0:Tno01586213-45583
ILOI283942:0:Tyes9805---3
JSP290400:1:Tyes2115--0----
JSP375286:0:Tyes01888893745891
KPNE272620:2:Tyes2120051417163
LBIF355278:2:Tyes------0-
LBIF456481:2:Tno------0-
LBOR355276:1:Tyes------0-
LBOR355277:1:Tno------0-
LCHO395495:0:Tyes431618471852-03201850
LINN272626:1:Tno0-------
LINT189518:1:Tyes------0-
LINT267671:1:Tno------0-
LINT363253:3:Tyes-0-413--645-
LLAC272622:5:Tyes---0----
LMON169963:0:Tno0-------
LMON265669:0:Tyes20------
LPLA220668:0:Tyes-------0
LPNE272624:0:Tno-20204--4812
LPNE297245:1:Fno-22440--5242
LPNE297246:1:Fyes-20704--5102
LPNE400673:0:Tno-21504--5332
LSPH444177:1:Tyes2266--0----
LWEL386043:0:Tyes0-------
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