CANDIDATE ID: 252

CANDIDATE ID: 252

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9919104e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- G7326 (iscR) (b2531)
   Products of gene:
     - G7326-MONOMER (IscR transcriptional dual regulator)
       Regulatees:
        TU0-14811 (rnlA)
        TU0-8481 (nfuA)
        TU0-8480 (erpA)
        TU0-8482 (ydiU)
        TU0-8484 (napFDAGHBC)
        TU0-1881 (iscRSUA)
        TU0-2621 (sufABCDSE)
        TU00288 (hyaABCDEF)

- G7325 (iscS) (b2530)
   Products of gene:
     - G7325-MONOMER (cysteine desulfurase monomer)
     - CPLX0-248 (cysteine desulfurase)
       Reactions:
        a ThiI sulfur-carrier protein + L-cysteine  ->  a ThiI persulfide + L-alanine
         In pathways
         THISYN-PWY (thiamin biosynthesis I)
        L-cysteine + a protein L-cysteine  ->  a protein-S-sulfanylcysteine + L-alanine
         In pathways
         PWY0-1061 (superpathway of alanine biosynthesis)
         PWY0-1021 (alanine biosynthesis III)

- EG12401 (rlmN) (b2517)
   Products of gene:
     - EG12401-MONOMER (23S rRNA m2A2503 methyltransferase)
       Reactions:
        S-adenosyl-L-methionine + adenine2503 in 23S rRNA  ->  S-adenosyl-L-homocysteine + 2-methyladenine2503 in 23S rRNA

- EG12311 (iscX) (b2524)
   Products of gene:
     - EG12311-MONOMER (protein with possible role in iron-sulfur cluster biogenesis)

- EG12131 (hscB) (b2527)
   Products of gene:
     - EG12131-MONOMER (Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly)

- EG12130 (hscA) (b2526)
   Products of gene:
     - EG12130-MONOMER (chaperone, member of Hsp70 protein family)
       Reactions:
        ATP + H2O  ->  ADP + phosphate + 2 H+

- EG10983 (suhB) (b2533)
   Products of gene:
     - EG10983-MONOMER (inositol monophosphatase)
       Reactions:
        glycerol 2-phosphate + H2O  =  phosphate + glycerol
        1D-myo-inositol (1)-monophosphate + H2O  =  phosphate + myo-inositol
         In pathways
         PWY-4702 (PWY-4702)

- EG10015 (rodZ) (b2516)
   Products of gene:
     - EG10015-MONOMER (rod shape-determining membrane protein)



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 140
Effective number of orgs (counting one per cluster within 468 clusters): 87

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VFIS312309 ncbi Vibrio fischeri ES1148
VCHO345073 ncbi Vibrio cholerae O3958
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169618
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252598
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
SSP94122 ncbi Shewanella sp. ANA-38
SSON300269 ncbi Shigella sonnei Ss0468
SSED425104 ncbi Shewanella sediminis HAW-EB38
SPRO399741 ncbi Serratia proteamaculans 5688
SPEA398579 ncbi Shewanella pealeana ATCC 7003458
SONE211586 ncbi Shewanella oneidensis MR-18
SLOI323850 ncbi Shewanella loihica PV-48
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SHAL458817 ncbi Shewanella halifaxensis HAW-EB48
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1978
SDEN318161 ncbi Shewanella denitrificans OS2178
SBOY300268 ncbi Shigella boydii Sb2278
SBAL402882 ncbi Shewanella baltica OS1858
SBAL399599 ncbi Shewanella baltica OS1958
RSOL267608 ncbi Ralstonia solanacearum GMI10008
RMET266264 ncbi Ralstonia metallidurans CH348
REUT381666 ncbi Ralstonia eutropha H168
REUT264198 ncbi Ralstonia eutropha JMP1348
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30008
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a8
PSTU379731 ncbi Pseudomonas stutzeri A15018
PSP56811 Psychrobacter sp.8
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-18
PPUT351746 ncbi Pseudomonas putida F18
PPUT160488 ncbi Pseudomonas putida KT24408
PPRO298386 ncbi Photobacterium profundum SS98
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PMEN399739 ncbi Pseudomonas mendocina ymp8
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO18
PING357804 ncbi Psychromonas ingrahamii 378
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFLU220664 ncbi Pseudomonas fluorescens Pf-58
PFLU216595 ncbi Pseudomonas fluorescens SBW258
PFLU205922 ncbi Pseudomonas fluorescens Pf0-18
PENT384676 ncbi Pseudomonas entomophila L488
PCRY335284 ncbi Psychrobacter cryohalolentis K57
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PARC259536 ncbi Psychrobacter arcticus 273-47
PAER208964 ncbi Pseudomonas aeruginosa PAO18
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA148
NMEN374833 ncbi Neisseria meningitidis 0534427
NMEN272831 ncbi Neisseria meningitidis FAM187
NMEN122587 ncbi Neisseria meningitidis Z24917
NMEN122586 ncbi Neisseria meningitidis MC587
NGON242231 ncbi Neisseria gonorrhoeae FA 10907
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E8
MPET420662 ncbi Methylibium petroleiphilum PM17
MMAG342108 ncbi Magnetospirillum magneticum AMB-17
MFLA265072 ncbi Methylobacillus flagellatus KT8
MCAP243233 ncbi Methylococcus capsulatus Bath8
LCHO395495 ncbi Leptothrix cholodnii SP-67
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
JSP375286 ncbi Janthinobacterium sp. Marseille8
HSOM228400 ncbi Haemophilus somnus 23367
HSOM205914 ncbi Haemophilus somnus 129PT7
HINF71421 ncbi Haemophilus influenzae Rd KW208
HINF374930 ncbi Haemophilus influenzae PittEE8
HINF281310 ncbi Haemophilus influenzae 86-028NP8
HDUC233412 ncbi Haemophilus ducreyi 35000HP8
HARS204773 ncbi Herminiimonas arsenicoxydans7
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DARO159087 ncbi Dechloromonas aromatica RCB8
CVIO243365 ncbi Chromobacterium violaceum ATCC 124728
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA7
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)7
CPSY167879 ncbi Colwellia psychrerythraea 34H8
BVIE269482 ncbi Burkholderia vietnamiensis G48
BTHA271848 ncbi Burkholderia thailandensis E2647
BSP36773 Burkholderia sp.8
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BPET94624 Bordetella petrii7
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128227
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BCEN331272 ncbi Burkholderia cenocepacia HI24248
BCEN331271 ncbi Burkholderia cenocepacia AU 10548
BBRO257310 ncbi Bordetella bronchiseptica RB507
BAMB398577 ncbi Burkholderia ambifaria MC40-68
BAMB339670 ncbi Burkholderia ambifaria AMMD8
ASP76114 ncbi Aromatoleum aromaticum EbN18
ASP62977 ncbi Acinetobacter sp. ADP18
ASP62928 ncbi Azoarcus sp. BH728
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL038
APLE416269 ncbi Actinobacillus pleuropneumoniae L208
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232708
ABAU360910 ncbi Bordetella avium 197N7
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3457
AAVE397945 ncbi Acidovorax citrulli AAC00-17


Names of the homologs of the genes in the group in each of these orgs
  G7326   G7325   EG12401   EG12311   EG12131   EG12130   EG10983   EG10015   
YPSE349747 YPSIP31758_1167YPSIP31758_1168YPSIP31758_1183YPSIP31758_1174YPSIP31758_1171YPSIP31758_1172YPSIP31758_1165YPSIP31758_1185
YPSE273123 YPTB2860YPTB2859YPTB2844YPTB2853YPTB2856YPTB2855YPTB2862YPTB2842
YPES386656 YPDSF_2242YPDSF_2241YPDSF_2227YPDSF_2235YPDSF_2238YPDSF_2237YPDSF_2244YPDSF_2225
YPES377628 YPN_1240YPN_1241YPN_1256YPN_1247YPN_1244YPN_1245YPN_1238YPN_1258
YPES360102 YPA_2338YPA_2337YPA_2322YPA_2331YPA_2334YPA_2333YPA_2340YPA_2320
YPES349746 YPANGOLA_A0436YPANGOLA_A0435YPANGOLA_A0421YPANGOLA_A0429YPANGOLA_A0432YPANGOLA_A0431YPANGOLA_A0438YPANGOLA_A0419
YPES214092 YPO2897YPO2896YPO2882YPO2890YPO2893YPO2892YPO2899YPO2880
YPES187410 Y1333Y1334Y1350Y1341Y1338Y1339Y1331Y1352
YENT393305 YE1056YE1057YE1070YE1063YE1060YE1061YE1054YE1072
VVUL216895 VV1_0439VV1_0438VV1_0429VV1_0432VV1_0435VV1_0434VV1_0441VV1_0428
VVUL196600 VV0754VV0755VV0764VV0761VV0758VV0759VV0752VV0765
VPAR223926 VP0595VP0596VP0605VP0602VP0599VP0600VP0593VP0607
VFIS312309 VF0616VF0617VF0626VF0623VF0620VF0621VF0614VF0628
VCHO345073 VC0395_A0276VC0395_A0277VC0395_A0286VC0395_A0283VC0395_A0280VC0395_A0281VC0395_A0274VC0395_A0287
VCHO VC0747VC0748VC0757VC0754VC0751VC0752VC0745VC0758
TDEN292415 TBD_1163TBD_1164TBD_0591TBD_1170TBD_1167TBD_1168TBD_1160TBD_0593
STYP99287 STM2544STM2543STM2525STM2537STM2540STM2539STM2546STM2524
SSP94122 SHEWANA3_2281SHEWANA3_2280SHEWANA3_1226SHEWANA3_2273SHEWANA3_2277SHEWANA3_2276SHEWANA3_2284SHEWANA3_1228
SSON300269 SSO_2613SSO_2612SSO_2599SSO_2606SSO_2609SSO_2608SSO_2615SSO_2598
SSED425104 SSED_2872SSED_2871SSED_1429SSED_2863SSED_2868SSED_2867SSED_2875SSED_1431
SPRO399741 SPRO_3628SPRO_3627SPRO_3612SPRO_3621SPRO_3624SPRO_3623SPRO_3630SPRO_3610
SPEA398579 SPEA_1487SPEA_1488SPEA_1302SPEA_1496SPEA_1491SPEA_1492SPEA_1484SPEA_1304
SONE211586 SO_2263SO_2264SO_3315SO_2271SO_2267SO_2268SO_2260SO_3313
SLOI323850 SHEW_2318SHEW_2317SHEW_1287SHEW_2311SHEW_2314SHEW_2313SHEW_2321SHEW_1289
SHIGELLA S2750YFHOYFGBYFHJYFHEHSCASUHBYFGA
SHAL458817 SHAL_1571SHAL_1572SHAL_1364SHAL_1578SHAL_1575SHAL_1576SHAL_1568SHAL_1366
SFLE373384 SFV_2579SFV_2578SFV_2564SFV_2572SFV_2575SFV_2574SFV_2581SFV_2563
SFLE198214 AAN44077.1AAN44076.1AAN44063.1AAN44070.1AAN44073.1AAN44072.1AAN44079.1AAN44062.1
SENT454169 SEHA_C2806SEHA_C2805SEHA_C2783SEHA_C2799SEHA_C2802SEHA_C2801SEHA_C2808SEHA_C2782
SENT321314 SCH_2538SCH_2537SCH_2522SCH_2532SCH_2534SCH_2540SCH_2521
SENT295319 SPA0322SPA0323SPA0342SPA0329SPA0326SPA0327SPA0320SPA0343
SENT220341 STY2790STY2789STY2770STY2783STY2786STY2785STY2792STY2769
SENT209261 T0312T0313T0331T0319T0316T0317T0310T0332
SDYS300267 SDY_2727SDY_2726SDY_2713SDY_2720SDY_2723SDY_2722SDY_2729SDY_2712
SDEN318161 SDEN_1457SDEN_1458SDEN_1253SDEN_0277SDEN_1461SDEN_1462SDEN_1454SDEN_1255
SBOY300268 SBO_2555SBO_2554SBO_2541SBO_2548SBO_2551SBO_2550SBO_2557SBO_2540
SBAL402882 SHEW185_2387SHEW185_2386SHEW185_3008SHEW185_2379SHEW185_2383SHEW185_2382SHEW185_2390SHEW185_3006
SBAL399599 SBAL195_2503SBAL195_2502SBAL195_3151SBAL195_2495SBAL195_2499SBAL195_2498SBAL195_2506SBAL195_3149
RSOL267608 RSC1018RSC1019RSC1212RSC1026RSC1023RSC1024RSC1160RSC1214
RMET266264 RMET_1024RMET_1025RMET_2109RMET_1031RMET_1028RMET_1029RMET_1078RMET_2107
REUT381666 H16_A1157H16_A1158H16_A2367H16_A1165H16_A1162H16_A1163H16_A1214H16_A2365
REUT264198 REUT_A1057REUT_A1058REUT_A2089REUT_A1065REUT_A1062REUT_A1063REUT_A1115REUT_A2087
PSYR223283 PSPTO_1422PSPTO_1423PSPTO_1431PSPTO_1429PSPTO_1426PSPTO_1427PSPTO_1419PSPTO_1433
PSYR205918 PSYR_1236PSYR_1237PSYR_1245PSYR_1243PSYR_1240PSYR_1241PSYR_1233PSYR_1247
PSTU379731 PST_3043PST_3042PST_3034PST_3036PST_3039PST_3038PST_3046PST_3032
PSP56811 PSYCPRWF_1628PSYCPRWF_1629PSYCPRWF_1905PSYCPRWF_0641PSYCPRWF_1632PSYCPRWF_1633PSYCPRWF_0412PSYCPRWF_1903
PSP296591 BPRO_2177BPRO_2178BPRO_2611BPRO_2181BPRO_2182BPRO_3293BPRO_2609
PPUT76869 PPUTGB1_0884PPUTGB1_0885PPUTGB1_0893PPUTGB1_0891PPUTGB1_0888PPUTGB1_0889PPUTGB1_0881PPUTGB1_0895
PPUT351746 PPUT_0871PPUT_0872PPUT_0880PPUT_0878PPUT_0875PPUT_0876PPUT_0868PPUT_0882
PPUT160488 PP_0841PP_0842PP_0850PP_0848PP_0845PP_0846PP_0838PP_0852
PPRO298386 PBPRA0749PBPRA0750PBPRA0760PBPRA0756PBPRA0753PBPRA0754PBPRA0747PBPRA0762
PMUL272843 PM0317PM0318PM2007PM0321PM0322PM0315PM2009
PMEN399739 PMEN_3512PMEN_3511PMEN_3503PMEN_3505PMEN_3508PMEN_3507PMEN_3515PMEN_3501
PLUM243265 PLU3284PLU3283PLU1373PLU3277PLU3280PLU3279PLU3286PLU1375
PING357804 PING_1323PING_1324PING_1165PING_1330PING_1327PING_1328PING_1321PING_1167
PHAL326442 PSHAA2672PSHAA2671PSHAB0141PSHAA2668PSHAA2667PSHAA0323PSHAB0139
PFLU220664 PFL_4966PFL_4965PFL_4957PFL_4959PFL_4962PFL_4961PFL_4969PFL_4955
PFLU216595 PFLU5069PFLU5068PFLU5060PFLU5062PFLU5065PFLU5064PFLU5072PFLU5058
PFLU205922 PFL_4613PFL_4612PFL_4604PFL_4606PFL_4609PFL_4608PFL_4616PFL_4602
PENT384676 PSEEN1009PSEEN1010PSEEN1018PSEEN1016PSEEN1013PSEEN1014PSEEN1005PSEEN1020
PCRY335284 PCRYO_1655PCRYO_1656PCRYO_0648PCRYO_0547PCRYO_1659PCRYO_1660PCRYO_0246
PATL342610 PATL_1237PATL_1238PATL_3129PATL_1241PATL_1242PATL_1232PATL_3127
PARC259536 PSYC_1476PSYC_1477PSYC_0679PSYC_0559PSYC_1480PSYC_1481PSYC_0222
PAER208964 PA3815PA3814PA3806PA3808PA3811PA3810PA3818PA3804
PAER208963 PA14_14710PA14_14730PA14_14830PA14_14810PA14_14770PA14_14780PA14_14680PA14_14860
NMEN374833 NMCC_1291NMCC_1293NMCC_1221NMCC_1056NMCC_1297NMCC_1050NMCC_1259
NMEN272831 NMC1314NMC1315NMC1245NMC1076NMC1319NMC1070NMC1283
NMEN122587 NMA1593NMA1594NMA1522NMA1347NMA1598NMA1340NMA1559
NMEN122586 NMB_1378NMB_1379NMB_1308NMB_1175NMB_1383NMB_1169NMB_1347
NGON242231 NGO0637NGO0636NGO0596NGO0823NGO0630NGO0829NGO0671
MSUC221988 MS1727MS1726MS1916MS1719MS1722MS1721MS1729MS1918
MPET420662 MPE_A2263MPE_A2262MPE_A1999MPE_A2259MPE_A2258MPE_A2841MPE_A1997
MMAG342108 AMB3030AMB3028AMB1124AMB3022AMB3025AMB3024AMB1286
MFLA265072 MFLA_0810MFLA_0808MFLA_1623MFLA_1920MFLA_0805MFLA_0804MFLA_0813MFLA_1621
MCAP243233 MCA_2883MCA_0247MCA_2887MCA_2825MCA_0251MCA_0252MCA_2609MCA_1363
LCHO395495 LCHO_1048LCHO_1360LCHO_2871LCHO_1044LCHO_1364LCHO_1218LCHO_2869
KPNE272620 GKPORF_B2197GKPORF_B2196GKPORF_B2181GKPORF_B2190GKPORF_B2193GKPORF_B2192GKPORF_B2199GKPORF_B2179
JSP375286 MMA_1251MMA_1252MMA_2130MMA_1258MMA_1255MMA_1256MMA_1298MMA_2128
HSOM228400 HSM_0153HSM_0154HSM_0364HSM_0157HSM_0158HSM_0151HSM_0728
HSOM205914 HS_0280HS_0281HS_1198HS_0284HS_0285HS_0278HS_0403
HINF71421 HI_0379HI_0378HI_0365HI_0371HI_0375HI_0373HI_0937HI_0367
HINF374930 CGSHIEE_01110CGSHIEE_01115CGSHIEE_01185CGSHIEE_01150CGSHIEE_01130CGSHIEE_01140CGSHIEE_07280CGSHIEE_01175
HINF281310 NTHI0499NTHI0498NTHI0485NTHI0491NTHI0495NTHI0493NTHI1108NTHI0487
HDUC233412 HD_1080HD_1082HD_0319HD_1089HD_1085HD_1087HD_0440HD_1036
HARS204773 HEAR2240HEAR2239HEAR1261HEAR2233HEAR2236HEAR2235HEAR2165
ESP42895 ENT638_3028ENT638_3027ENT638_3011ENT638_3021ENT638_3024ENT638_3023ENT638_3030ENT638_3010
EFER585054 EFER_0641EFER_0642EFER_0655EFER_0648EFER_0645EFER_0646EFER_0639EFER_0656
ECOO157 Z3798YFHOYFGBYFHJYFHEHSCAYFGA
ECOL83334 ECS3397ECS3396ECS3379ECS3390ECS3393ECS3392ECS3399ECS3378
ECOL585397 ECED1_2962ECED1_2961ECED1_2948ECED1_2955ECED1_2958ECED1_2957ECED1_2964ECED1_2947
ECOL585057 ECIAI39_2732ECIAI39_2731ECIAI39_2718ECIAI39_2725ECIAI39_2728ECIAI39_2727ECIAI39_2734ECIAI39_2717
ECOL585056 ECUMN_2851ECUMN_2850ECUMN_2837ECUMN_2844ECUMN_2847ECUMN_2846ECUMN_2853ECUMN_2836
ECOL585055 EC55989_2816EC55989_2815EC55989_2802EC55989_2809EC55989_2812EC55989_2811EC55989_2818EC55989_2801
ECOL585035 ECS88_2707ECS88_2706ECS88_2693ECS88_2700ECS88_2703ECS88_2702ECS88_2709ECS88_2692
ECOL585034 ECIAI1_2583ECIAI1_2582ECIAI1_2569ECIAI1_2576ECIAI1_2579ECIAI1_2578ECIAI1_2585ECIAI1_2568
ECOL481805 ECOLC_1146ECOLC_1147ECOLC_1160ECOLC_1153ECOLC_1150ECOLC_1151ECOLC_1144ECOLC_1161
ECOL469008 ECBD_1153ECBD_1154ECBD_1169ECBD_1160ECBD_1157ECBD_1158ECBD_1151ECBD_1170
ECOL439855 ECSMS35_2684ECSMS35_2683ECSMS35_2669ECSMS35_2676ECSMS35_2679ECSMS35_2678ECSMS35_2686ECSMS35_2668
ECOL413997 ECB_02423ECB_02422ECB_02409ECB_02416ECB_02419ECB_02418ECB_02425ECB_02408
ECOL409438 ECSE_2817ECSE_2816ECSE_2803ECSE_2810ECSE_2813ECSE_2812ECSE_2820ECSE_2802
ECOL405955 APECO1_3994APECO1_3995APECO1_4007APECO1_3998APECO1_3999APECO1_3992APECO1_4008
ECOL364106 UTI89_C2853UTI89_C2852UTI89_C2838UTI89_C2846UTI89_C2849UTI89_C2848UTI89_C2855UTI89_C2837
ECOL362663 ECP_2536ECP_2535ECP_2522ECP_2529ECP_2532ECP_2531ECP_2538ECP_2521
ECOL331111 ECE24377A_2816ECE24377A_2815ECE24377A_2801ECE24377A_2808ECE24377A_2811ECE24377A_2810ECE24377A_2818ECE24377A_2800
ECOL316407 ECK2528:JW2515:B2531ECK2527:JW2514:B2530ECK2513:JW2501:B2517ECK2521:JW2508:B2524ECK2524:JW2511:B2527ECK2523:JW2510:B2526ECK2530:JW2517:B2533ECK2512:JW2500:B2516
ECOL199310 C3057C3056C3039C3049C3052C3051C3059C3038
ECAR218491 ECA3238ECA3237ECA3223ECA3231ECA3234ECA3233ECA3240ECA3221
DARO159087 DARO_1948DARO_1950DARO_2988DARO_1956DARO_1953DARO_1954DARO_1681DARO_2986
CVIO243365 CV_1095CV_1094CV_3541CV_1087CV_1091CV_1089CV_3644CV_3539
CVES412965 COSY_0533COSY_0532COSY_0356COSY_0472COSY_0529COSY_0528COSY_0452
CRUT413404 RMAG_0578RMAG_0577RMAG_0382RMAG_0514RMAG_0574RMAG_0573RMAG_0491
CPSY167879 CPS_1131CPS_1132CPS_4255CPS_4263CPS_1135CPS_1136CPS_1128CPS_4253
BVIE269482 BCEP1808_2206BCEP1808_2205BCEP1808_1741BCEP1808_2199BCEP1808_2202BCEP1808_2201BCEP1808_1987BCEP1808_1740
BTHA271848 BTH_I1874BTH_I1875BTH_I2232BTH_I1881BTH_I1878BTH_I1879BTH_I1934
BSP36773 BCEP18194_A5433BCEP18194_B2412BCEP18194_A5115BCEP18194_A5426BCEP18194_A5429BCEP18194_A5428BCEP18194_A5391BCEP18194_A5114
BPSE320373 BURPS668_2600BURPS668_2599BURPS668_2192BURPS668_2593BURPS668_2596BURPS668_2595BURPS668_2553
BPSE320372 BURPS1710B_A2966BURPS1710B_A2965BURPS1710B_A2559BURPS1710B_A2959BURPS1710B_A2962BURPS1710B_A2961BURPS1710B_A2921
BPSE272560 BPSL2290BPSL2289BPSL1511BPSL2283BPSL2286BPSL2285BPSL2250
BPET94624 BPET2778BPET2777BPET2017BPET2771BPET2774BPET2773BPET3457
BPER257313 BP1798BP1799BP2201BP1805BP1802BP1803BP1902
BPAR257311 BPP2027BPP2028BPP2857BPP2034BPP2031BPP2032BPP2277
BMAL320389 BMA10247_1490BMA10247_1489BMA10247_1109BMA10247_1483BMA10247_1486BMA10247_1485BMA10247_1441
BMAL320388 BMASAVP1_A2218BMASAVP1_A2217BMASAVP1_A1837BMASAVP1_A2211BMASAVP1_A2214BMASAVP1_A2213BMASAVP1_A2168
BMAL243160 BMA_1709BMA_1708BMA_1347BMA_1702BMA_1705BMA_1704BMA_1664
BCEN331272 BCEN2424_2127BCEN2424_2126BCEN2424_1814BCEN2424_2120BCEN2424_2123BCEN2424_2122BCEN2424_2085BCEN2424_1813
BCEN331271 BCEN_5950BCEN_5951BCEN_6265BCEN_5957BCEN_5954BCEN_5955BCEN_5992BCEN_6266
BBRO257310 BB2275BB2276BB3178BB2282BB2279BB2280BB1729
BAMB398577 BAMMC406_2037BAMMC406_2036BAMMC406_1725BAMMC406_2030BAMMC406_2033BAMMC406_2032BAMMC406_1990BAMMC406_1724
BAMB339670 BAMB_2164BAMB_2163BAMB_1752BAMB_2157BAMB_2160BAMB_2159BAMB_2120BAMB_1751
ASP76114 EBA6404EBA6401EBA1268EBA6395EBA6397EBA6396EBA6410EBA1262
ASP62977 ACIAD1405ACIAD1404ACIAD0557ACIAD0555ACIAD1400ACIAD1399ACIAD3246ACIAD0560
ASP62928 AZO2018AZO2016AZO0924AZO2010AZO2013AZO2012AZO2021AZO0926
ASAL382245 ASA_2613ASA_2612ASA_2602ASA_2608ASA_2607ASA_2649ASA_2600
APLE434271 APJL_0942APJL_0941APJL_1285APJL_0933APJL_0938APJL_0935APJL_0207APJL_1199
APLE416269 APL_0932APL_0931APL_1274APL_0923APL_0928APL_0925APL_0206APL_1177
AHYD196024 AHA_1746AHA_1747AHA_1756AHA_1750AHA_1751AHA_1710AHA_1758
AFER243159 AFE_2368AFE_2367AFE_1160AFE_2361AFE_2364AFE_2363AFE_2371AFE_1158
ABAU360910 BAV1507BAV1508BAV2346BAV1514BAV1511BAV1512BAV2568
ABAC204669 ACID345_0485ACID345_0484ACID345_1567ACID345_0478ACID345_0481ACID345_0480ACID345_2060
AAVE397945 AAVE_2442AAVE_2443AAVE_1421AAVE_2446AAVE_2447AAVE_2070AAVE_1423


Organism features enriched in list (features available for 134 out of the 140 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00195631192
Arrangment:Pairs 0.000046542112
Disease:Bubonic_plague 0.000135166
Disease:Dysentery 0.000135166
Disease:Gastroenteritis 0.00004331013
Disease:Meningitis_and_septicemia 0.002695344
Endospores:No 2.973e-627211
GC_Content_Range4:0-40 4.632e-1810213
GC_Content_Range4:40-60 1.925e-1083224
GC_Content_Range7:30-40 1.924e-1110166
GC_Content_Range7:50-60 1.259e-848107
GC_Content_Range7:60-70 0.005808641134
Genome_Size_Range5:0-2 1.503e-136155
Genome_Size_Range5:2-4 8.115e-821197
Genome_Size_Range5:4-6 1.474e-1885184
Genome_Size_Range5:6-10 0.00010642247
Genome_Size_Range9:0-1 0.0061499127
Genome_Size_Range9:1-2 5.923e-115128
Genome_Size_Range9:2-3 0.000648815120
Genome_Size_Range9:3-4 0.0001523677
Genome_Size_Range9:4-5 1.069e-74396
Genome_Size_Range9:5-6 1.509e-84288
Genome_Size_Range9:6-8 6.382e-62138
Gram_Stain:Gram_Neg 3.643e-22122333
Habitat:Multiple 0.001872654178
Motility:No 6.601e-911151
Motility:Yes 2.127e-787267
Optimal_temp.:35-37 3.134e-91313
Oxygen_Req:Anaerobic 8.100e-85102
Oxygen_Req:Facultative 1.254e-1281201
Pathogenic_in:Human 0.000215166213
Pathogenic_in:No 2.787e-630226
Shape:Coccus 0.0001932782
Shape:Rod 1.170e-11112347
Shape:Spiral 0.0011288134
Temp._range:Mesophilic 0.0060139118473
Temp._range:Psychrophilic 0.000046489
Temp._range:Thermophilic 0.0008805135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 187
Effective number of orgs (counting one per cluster within 468 clusters): 150

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81021
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSOL273057 ncbi Sulfolobus solfataricus P20
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SGOR29390 Streptococcus gordonii Challis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
NSP35761 Nocardioides sp.1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
FMAG334413 ncbi Finegoldia magna ATCC 293281
EFAE226185 ncbi Enterococcus faecalis V5831
DSP216389 ncbi Dehalococcoides sp. BAV11
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC0
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1351
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7326   G7325   EG12401   EG12311   EG12131   EG12130   EG10983   EG10015   
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX1562
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TPAL243276
TKOD69014
TDEN243275
TACI273075
STOK273063
STHE322159 STER_1660
STHE299768 STR1696
STHE264199 STU1696
SSUI391296 SSU98_1686
SSUI391295
SSP84588 SYNW1275OR0227
SSP387093 SUN_1872
SSOL273057
SPYO370554
SPYO370553
SPYO370552 MGAS10270_SPY1277
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221 SP70585_0811
SPNE487214 SPH_0867
SPNE487213
SPNE171101 SPR0676
SPNE170187 SPN04149
SPNE1313
SMUT210007 SMU_522
SMAR399550
SGOR29390 SGO_0654
SERY405948 SACE_1803
SARE391037 SARE_1441
SAGA211110 GBS0505
SAGA208435 SAG_0458
SAGA205921 SAK_0559
SACI330779
RSAL288705
PTOR263820
PRUM264731 GFRORF1146
PPEN278197
PMAR93060 P9215_09931
PMAR74546 PMT9312_0901
PMAR167546 P9301ORF_0977
PMAR167542 P9515ORF_1029
PMAR167540 PMM0899
PMAR146891 A9601_09621
PISL384616
PINT246198 PIN_A1266
PHOR70601
PGIN242619 PG_2065
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
NSP35761 NOCA_3679
NPHA348780
NFAR247156 NFA37570
MVAN350058 MVAN_4419
MTUB419947 MRA_1295
MTUB336982 TBFG_11313
MTHE349307 MTHE_0872
MTHE187420
MTBRV RV1287
MTBCDC MT1325
MSYN262723
MSTA339860 MSP_1002
MSP189918 MKMS_3989
MSP164757 MJLS_3930
MSP164756 MMCS_3915
MSME246196 MSMEG_4974
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM0109
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_1914
MMAR267377
MLEP272631
MLAB410358 MLAB_0266
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2213
MGIL350054 MFLV_2276
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289 BCG_1346
MBOV233413 MB1318
MBAR269797 MBAR_A3201
MAVI243243
MART243272
MAEO419665
MACE188937 MA2718
LXYL281090
LSAK314315
LREU557436
LPLA220668 LP_2304
LMES203120
LLAC272623
LLAC272622 LACR_0188
LJOH257314
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LACI272621
KRAD266940 KRAD_1553
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP0206
HPYL357544 HPAG1_0222
HPY HP0220
HMUK485914
HMAR272569 RRNB0102
HBUT415426
HACI382638 HAC_1498
FMAG334413 FMG_0624
EFAE226185 EF_2048
DSP216389 DEHABAV1_1341
CTRA471473
CTRA471472
CSUL444179
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMUR243161
CMIC443906 CMM_2799
CMIC31964 CMS3003
CMET456442 MBOO_0356
CMAQ397948
CKOR374847
CJEJ407148 C8J_1617
CJEJ360109 JJD26997_2087
CJEJ354242 CJJ81176_0007
CJEJ195099 CJE_1882
CJEJ192222 CJ1713
CJEI306537 JK1169
CGLU196627
CFET360106 CFF8240_1816
CFEL264202
CEFF196164 CE1907
CDIP257309
CCUR360105 CCV52592_1119
CCON360104 CCC13826_1892
CCAV227941
CABO218497
BTUR314724 BT0518
BLON206672 BL1508
BHER314723 BH0518
BGAR290434 BG0529
BBUR224326 BB_0518
BAFZ390236 BAPKO_0545
AYEL322098
AURANTIMONAS
ASP1667
APER272557
ANAE240017 ANA_1171
ALAI441768 ACL_0251
AFUL224325 AF_0186
AAUR290340 AAUR_1435


Organism features enriched in list (features available for 176 out of the 187 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00011744392
Arrangment:Pairs 0.001030421112
Disease:Pharyngitis 0.000061688
Disease:Wide_range_of_infections 1.517e-61111
Disease:bronchitis_and_pneumonitis 0.000061688
Endospores:No 6.761e-25119211
Endospores:Yes 4.935e-6353
GC_Content_Range4:0-40 8.662e-790213
GC_Content_Range4:40-60 0.004713855224
GC_Content_Range4:60-100 0.002197731145
GC_Content_Range7:30-40 0.000037370166
GC_Content_Range7:50-60 0.000102617107
GC_Content_Range7:60-70 0.000583926134
Genome_Size_Range5:0-2 4.849e-27101155
Genome_Size_Range5:4-6 1.318e-1517184
Genome_Size_Range5:6-10 0.0007602547
Genome_Size_Range9:0-1 1.617e-62027
Genome_Size_Range9:1-2 4.895e-1981128
Genome_Size_Range9:3-4 0.00211511377
Genome_Size_Range9:4-5 5.110e-71096
Genome_Size_Range9:5-6 5.785e-8788
Genome_Size_Range9:6-8 0.0024301438
Gram_Stain:Gram_Neg 8.727e-2347333
Gram_Stain:Gram_Pos 1.170e-771150
Habitat:Host-associated 0.002616676206
Habitat:Multiple 0.003343841178
Habitat:Terrestrial 0.0045143331
Motility:No 3.722e-1280151
Motility:Yes 8.332e-852267
Optimal_temp.:- 0.000061357257
Optimal_temp.:30-35 0.003518767
Optimal_temp.:37 0.000050649106
Optimal_temp.:85 0.008108744
Oxygen_Req:Aerobic 0.000036136185
Oxygen_Req:Anaerobic 0.005380141102
Oxygen_Req:Microaerophilic 0.00439161118
Pathogenic_in:Animal 0.0005942966
Pathogenic_in:Swine 0.002408855
Salinity:Non-halophilic 0.000116948106
Shape:Coccus 8.271e-84682
Shape:Irregular_coccus 7.141e-71517
Shape:Rod 8.273e-1661347
Shape:Sphere 1.037e-61619
Shape:Spiral 0.00083111934
Temp._range:Hyperthermophilic 0.00001131723



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 2
Effective number of orgs (counting one per cluster within 468 clusters): 2

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA 0.00655317327
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica) 0.00810917557


Names of the homologs of the genes in the group in each of these orgs
  G7326   G7325   EG12401   EG12311   EG12131   EG12130   EG10983   EG10015   
CVES412965 COSY_0533COSY_0532COSY_0356COSY_0472COSY_0529COSY_0528COSY_0452
CRUT413404 RMAG_0578RMAG_0577RMAG_0382RMAG_0514RMAG_0574RMAG_0573RMAG_0491


Organism features enriched in list (features available for 2 out of the 2 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181300.6532
AST-PWY (arginine degradation II (AST pathway))120900.6147
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761080.5847
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911090.5511
GLYCOCAT-PWY (glycogen degradation I)2461240.5406
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001370.5356
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951060.5157
GALACTITOLCAT-PWY (galactitol degradation)73590.5093
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81620.5008
PWY-1269 (CMP-KDO biosynthesis I)3251380.5001
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911300.4980
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961310.4966
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901290.4921
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251120.4919
PWY-5913 (TCA cycle variation IV)3011310.4876
PWY-5386 (methylglyoxal degradation I)3051310.4805
GLUCONSUPER-PWY (D-gluconate degradation)2291110.4749
LIPASYN-PWY (phospholipases)2121050.4656
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149850.4644
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50440.4638
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491150.4636
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491150.4636
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91630.4633
PWY-4041 (γ-glutamyl cycle)2791220.4586
PWY-5918 (heme biosynthesis I)2721200.4565
PWY-5148 (acyl-CoA hydrolysis)2271080.4554
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481370.4554
GLUCARDEG-PWY (D-glucarate degradation I)152850.4552
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183950.4549
PWY0-981 (taurine degradation IV)106680.4521
GLUTDEG-PWY (glutamate degradation II)194980.4518
PWY-3162 (tryptophan degradation V (side chain pathway))94630.4499
P601-PWY (D-camphor degradation)95630.4456
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861220.4455
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121020.4412
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391330.4387
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))191950.4344
PWY-6196 (serine racemization)102640.4269
DAPLYSINESYN-PWY (lysine biosynthesis I)3421320.4262
PWY0-1182 (trehalose degradation II (trehalase))70500.4173
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135750.4169
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301040.4169
PWY-46 (putrescine biosynthesis III)138760.4166
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291280.4165
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116680.4143
KDOSYN-PWY (KDO transfer to lipid IVA I)180890.4119
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)179880.4060



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7325   EG12401   EG12311   EG12131   EG12130   EG10983   EG10015   
G73260.999920.9986190.9994360.9997120.9995860.9993740.998853
G73250.9987940.9994430.9997540.9996560.9993430.998958
EG124010.9988930.9985440.9986510.9987150.999774
EG123110.9995590.999610.9991420.998848
EG121310.999830.9992840.998703
EG121300.9990920.998624
EG109830.998632
EG10015



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PAIRWISE BLAST SCORES:

  G7326   G7325   EG12401   EG12311   EG12131   EG12130   EG10983   EG10015   
G73260.0f0-------
G7325-0.0f0------
EG12401--0.0f0-----
EG12311---0.0f0----
EG12131----0.0f0---
EG12130-----0.0f0--
EG10983------0.0f0-
EG10015-------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10983 EG12130 EG12131 EG12311 G7325 G7326 (centered at G7325)
EG10015 EG12401 (centered at EG12401)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7326   G7325   EG12401   EG12311   EG12131   EG12130   EG10983   EG10015   
337/623326/623408/623140/623170/623308/623376/623163/623
AAEO224324:0:Tyes-2210---1103-
AAUR290340:2:Tyes------0-
AAVE397945:0:Tyes100510060-100910106402
ABAC204669:0:Tyes7610950321594-
ABAU360910:0:Tyes018397451063-
ABOR393595:0:Tyes159615951586--02081584
ABUT367737:0:Tyes21075510---384-
ACAU438753:0:Tyes--260--1980-
ACEL351607:0:Tyes--131---0-
ACRY349163:8:Tyes--1698--6326950
ADEH290397:0:Tyes-010517352823-
AEHR187272:0:Tyes12530620--1266615622
AFER243159:0:Tyes11941193211871190118911970
AFUL224325:0:Tyes-0------
AHYD196024:0:Tyes363746-4041048
ALAI441768:0:Tyes--0-----
AMAR234826:0:Tyes262261-0259388--
AMAR329726:9:Tyes6480----1316-
AMET293826:0:Tyes01325-----
ANAE240017:0:Tyes--0-----
AORE350688:0:Tyes2352340-----
APHA212042:0:Tyes-310-6003130--
APLE416269:0:Tyes73072910677217267230972
APLE434271:0:Tno70670510516977026990965
ASAL382245:5:Tyes12111-76470
ASP232721:2:Tyes10541053120-105010490-
ASP62928:0:Tyes11231121011151118111711262
ASP62977:0:Tyes8198182081581425164
ASP76114:2:Tyes30343032230263029302830370
AVAR240292:3:Tyes26970---485550-
BABO262698:0:Tno0-------
BABO262698:1:Tno--0--19421553-
BAFZ390236:2:Fyes-----0--
BAMB339670:3:Tno42542414184214203810
BAMB398577:3:Tno32031913133163152730
BAMY326423:0:Tyes1009-105---0-
BANT260799:0:Tno5765750-----
BANT261594:2:Tno6005990-----
BANT568206:2:Tyes394939480-----
BANT592021:2:Tno6096080-----
BAPH198804:0:Tyes-3011-3033040-
BAPH372461:0:Tyes-2131-215-0-
BBAC264462:0:Tyes-4170---2413-
BBAC360095:0:Tyes--1117--10830-
BBRO257310:0:Tyes56056114575675645650-
BBUR224326:21:Fno-----0--
BCAN483179:0:Tno0-------
BCAN483179:1:Tno--0--20221612-
BCEN331271:0:Tno0132674542327
BCEN331272:3:Tyes31431313073103092720
BCER226900:1:Tyes523-0---94-
BCER288681:0:Tno5165150---94-
BCER315749:1:Tyes5825810---142-
BCER405917:1:Tyes5545530---97-
BCER572264:1:Tno5355340-----
BCIC186490:0:Tyes-1----0-
BCLA66692:0:Tyes0-----825-
BFRA272559:1:Tyes--0---3139-
BFRA295405:0:Tno--0---3371-
BGAR290434:2:Fyes-----0--
BHAL272558:0:Tyes011251---1380-
BHEN283166:0:Tyes--0--381360-
BHER314723:0:Fyes-----0--
BJAP224911:0:Fyes--0--1571007-
BLIC279010:0:Tyes11601159107---0-
BLON206672:0:Tyes--0-----
BMAL243160:1:Tno3213200314317316281-
BMAL320388:1:Tno3693680362365364321-
BMAL320389:1:Tyes3713700364367366324-
BMEL224914:0:Tno0-------
BMEL224914:1:Tno--1576--17120-
BMEL359391:1:Tno--0--18761499-
BOVI236:0:Tyes0-------
BOVI236:1:Tyes--0--17571407-
BPAR257311:0:Tno01787745240-
BPER257313:0:Tyes0135574584-
BPET94624:0:Tyes76576407587617601464-
BPSE272560:1:Tyes7727710765768767733-
BPSE320372:1:Tno3183170311314313273-
BPSE320373:1:Tno3893880382385384343-
BPUM315750:0:Tyes10141013109---0-
BQUI283165:0:Tyes--0--371026-
BSP107806:2:Tyes-3131-3153160-
BSP36773:1:Tyes-0------
BSP36773:2:Tyes331-13243273262890
BSP376:0:Tyes--77--0894-
BSUB:0:Tyes13321331116---0-
BSUI204722:0:Tyes0-------
BSUI204722:1:Tyes--0--19771578-
BSUI470137:0:Tno157-----0-
BSUI470137:1:Tno--0--1829--
BTHA271848:1:Tno0135074560-
BTHE226186:0:Tyes--1589---0-
BTHU281309:1:Tno5235220---97-
BTHU412694:1:Tno4714700-----
BTRI382640:1:Tyes--0--421875-
BTUR314724:0:Fyes-----0--
BVIE269482:7:Tyes46446314574604592460
BWEI315730:4:Tyes5475460---95-
BXEN266265:1:Tyes-0---4--
CACE272562:1:Tyes055051-----
CAULO:0:Tyes1879-125--03305-
CBEI290402:0:Tyes640051-----
CBLO203907:0:Tyes-415---0416-
CBLO291272:0:Tno-430428--0431-
CBOT36826:1:Tno013701305-----
CBOT441770:0:Tyes012731147-----
CBOT441771:0:Tno011921116-----
CBOT441772:1:Tno013411277-----
CBOT498213:1:Tno013781245-----
CBOT508765:1:Tyes0151-----
CBOT515621:2:Tyes015541492-----
CBOT536232:0:Tno014971432-----
CBUR227377:1:Tyes-0118--1544116
CBUR360115:1:Tno-0110--1513107
CBUR434922:2:Tno-0103--1453100
CCHL340177:0:Tyes--667---0-
CCON360104:2:Tyes--0-----
CCUR360105:0:Tyes--0-----
CDES477974:0:Tyes6610------
CDIF272563:1:Tyes011324-----
CEFF196164:0:Fyes--0-----
CFET360106:0:Tyes--0-----
CHOM360107:1:Tyes0-823-----
CHUT269798:0:Tyes0-2877---3011-
CHYD246194:0:Tyes7017000-----
CJAP155077:0:Tyes2315---017
CJEI306537:0:Tyes--0-----
CJEJ192222:0:Tyes--0-----
CJEJ195099:0:Tno--0-----
CJEJ354242:2:Tyes--0-----
CJEJ360109:0:Tyes--0-----
CJEJ407148:0:Tno--0-----
CKLU431943:1:Tyes2300286-----
CMET456442:0:Tyes-0------
CMIC31964:2:Tyes------0-
CMIC443906:2:Tyes------0-
CNOV386415:0:Tyes43420-----
CPEL335992:0:Tyes377----0221-
CPER195102:1:Tyes46450-----
CPER195103:0:Tno45440-----
CPER289380:3:Tyes45440-----
CPHY357809:0:Tyes01074657-----
CPRO264201:0:Fyes--0---900-
CPSY167879:0:Tyes34303530437803033
CRUT413404:0:Tyes1861850124182181103-
CSAL290398:0:Tyes103810391042--128801044
CSP501479:7:Fyes--0--39--
CSP501479:8:Fyes1301-----0-
CSP78:2:Tyes2590-182--0739-
CTEP194439:0:Tyes-1333532--01004-
CTET212717:0:Tyes01160-----
CVES412965:0:Tyes170169011016616590-
CVIO243365:0:Tyes87252204226292520
DARO159087:0:Tyes271273131127927627701309
DDES207559:0:Tyes024762355--3831369-
DETH243164:0:Tyes-0---1111--
DGEO319795:1:Tyes0-134-----
DHAF138119:0:Tyes10265-----
DNOD246195:0:Tyes--0--3032812
DOLE96561:0:Tyes228422682336--670-
DPSY177439:2:Tyes-597302--0--
DRAD243230:3:Tyes1132-0-----
DRED349161:0:Tyes01947--1736--
DSHI398580:5:Tyes439-2134--23940-
DSP216389:0:Tyes0-------
DSP255470:0:Tno12440------
DVUL882:1:Tyes01342363---1146-
ECAN269484:0:Tyes220219-0216215--
ECAR218491:0:Tyes17162101312190
ECHA205920:0:Tyes01-26245--
ECOL199310:0:Tno19181111413210
ECOL316407:0:Tno1615191211180
ECOL331111:6:Tno1615181110180
ECOL362663:0:Tno1514181110170
ECOL364106:1:Tno1615191211180
ECOL405955:2:Tyes14131-109160
ECOL409438:6:Tyes1514181110180
ECOL413997:0:Tno1514181110170
ECOL439855:4:Tno1615181110180
ECOL469008:0:Tno2318967019
ECOL481805:0:Tno2316967017
ECOL585034:0:Tno17161101312190
ECOL585035:0:Tno17161101312190
ECOL585055:0:Tno17161101312190
ECOL585056:2:Tno18171111413200
ECOL585057:0:Tno17161101312190
ECOL585397:0:Tno17161101312190
ECOL83334:0:Tno19181121514210
ECOLI:0:Tno18171111413200
ECOO157:0:Tno19181121514-0
EFAE226185:3:Tyes--0-----
EFER585054:1:Tyes2319967020
ELIT314225:0:Tyes1523-510---0-
ERUM254945:0:Tyes243246-0249397--
ERUM302409:0:Tno244245-0248392--
ESP42895:1:Tyes18171111413200
FALN326424:0:Tyes--3626---0-
FJOH376686:0:Tyes-24270--864--
FMAG334413:1:Tyes0-------
FNOD381764:0:Tyes71-0-----
FNUC190304:0:Tyes11580468-----
FPHI484022:1:Tyes-98356---0-
FRANT:0:Tno-1460---306-
FSP106370:0:Tyes--2253---0-
FSP1855:0:Tyes--0---3957-
FSUC59374:0:Tyes1268----1270-
FTUL351581:0:Tno-0256---346-
FTUL393011:0:Tno-0231---311-
FTUL393115:0:Tyes-1450---294-
FTUL401614:0:Tyes-2960---396-
FTUL418136:0:Tno-189402---0-
FTUL458234:0:Tno-0242---316-
GBET391165:0:Tyes8851921424--01062-
GFOR411154:0:Tyes-940--1730--
GKAU235909:1:Tyes15171516106---0-
GMET269799:1:Tyes1752961991--28380-
GOXY290633:5:Tyes954-17--6180-
GSUL243231:0:Tyes252619661071--0903-
GTHE420246:1:Tyes1532153192---0-
GURA351605:0:Tyes128412831368--03130-
GVIO251221:0:Tyes6063097766906-29780-
HACI382638:1:Tyes-0------
HARS204773:0:Tyes9189170911914913846-
HAUR316274:2:Tyes254134683898--02878-
HCHE349521:0:Tyes309830973095--047043093
HDUC233412:0:Tyes6736740681677679114639
HHAL349124:0:Tyes0-1586--126815911584
HHEP235279:0:Tyes-0---102--
HINF281310:0:Tyes1413061085792
HINF374930:0:Tyes0115846107113
HINF71421:0:Tno1413061085692
HMAR272569:6:Tyes------0-
HMOD498761:0:Tyes02274-----
HNEP81032:0:Tyes--142--1320-
HPY:0:Tno-0------
HPYL357544:1:Tyes-0------
HPYL85963:0:Tno-0------
HSOM205914:1:Tyes23924-670127
HSOM228400:0:Tno23215-670585
ILOI283942:0:Tyes652---80
JSP290400:1:Tyes2115-0---765-
JSP375286:0:Tyes0189374547891
KPNE272620:2:Tyes18172111413200
KRAD266940:2:Fyes------0-
LBIF355278:2:Tyes-----1120-
LBIF456481:2:Tno-----1140-
LBOR355276:1:Tyes-----0242-
LBOR355277:1:Tno-----2390-
LCHO395495:0:Tyes43161852-03201741850
LINN272626:1:Tno496-----0-
LINT189518:1:Tyes-----35020-
LINT267671:1:Tno-----3230-
LINT363253:3:Tyes-0413--645--
LLAC272622:5:Tyes--0-----
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